Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95050.t1 | XP_013458715.1 | 95.8 | 284 | 12 | 0 | 14 | 297 | 19 | 302 | 2.20E-148 | 535 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95050.t1 | Q6DEY1 | 27.5 | 273 | 147 | 9 | 18 | 285 | 4 | 230 | 1.0e-13 | 79.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95050.t1 | A0A072USW8 | 95.8 | 284 | 12 | 0 | 14 | 297 | 19 | 302 | 1.6e-148 | 535.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051243 | MS.gene95050 | 0.805562 | 1.26E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene95050 | 0.805752 | 1.15E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene95050 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene95050 | 0.806132 | 9.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95050.t1 | MTR_4g134630 | 95.033 | 302 | 10 | 1 | 1 | 297 | 1 | 302 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95050.t1 | AT2G02570 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.85e-143 | 405 |
| MS.gene95050.t1 | AT2G02570 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.85e-143 | 405 |
| MS.gene95050.t1 | AT2G02570 | 66.667 | 297 | 85 | 3 | 12 | 297 | 6 | 299 | 1.85e-143 | 405 |
| MS.gene95050.t1 | AT2G02570 | 63.300 | 297 | 83 | 4 | 12 | 297 | 6 | 287 | 9.88e-133 | 378 |
Find 76 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCGCATCTTAGACTTAA+AGG | 0.209233 | 8.2:-222240 | None:intergenic |
| TGTGGGTGGGTGTTGGAGAT+TGG | 0.224072 | 8.2:-220501 | None:intergenic |
| GTGGGTGGGTGTTGGAGATT+GGG | 0.293108 | 8.2:-220500 | None:intergenic |
| GGCTCTATACGAAGCTTTGC+AGG | 0.323302 | 8.2:-221934 | None:intergenic |
| TCCTGTTGGCACTAGAGTTC+AGG | 0.334191 | 8.2:+220654 | MS.gene95050:CDS |
| TCAACAGTTCCTTCTTGAAT+TGG | 0.334241 | 8.2:-221811 | None:intergenic |
| CTTCAAGATTGGTTTCTTCT+CGG | 0.338340 | 8.2:+222930 | MS.gene95050:intron |
| AGAAGGAACTGTTGATCCTT+TGG | 0.344531 | 8.2:+221819 | MS.gene95050:CDS |
| TGTTGGAGATTGGGTGGAAG+TGG | 0.361676 | 8.2:-220491 | None:intergenic |
| CAAGGAAAGGTTGGTGTGAC+TGG | 0.362128 | 8.2:+222994 | MS.gene95050:CDS |
| TTACAAACAACAACTTCATC+AGG | 0.389377 | 8.2:+219861 | MS.gene95050:CDS |
| CAACAGGAAATTTGTGTTGA+TGG | 0.395602 | 8.2:-220639 | None:intergenic |
| ACCTTTCCTTGAGGATCATC+AGG | 0.403855 | 8.2:-222982 | None:intergenic |
| AACACCCACCCACAATAAAC+TGG | 0.407152 | 8.2:+220510 | MS.gene95050:CDS |
| AAGGTTGGTGTGACTGGAAG+TGG | 0.416029 | 8.2:+223000 | MS.gene95050:CDS |
| TTGAATTGGCCTTATGTTAG+CGG | 0.420910 | 8.2:-221797 | None:intergenic |
| CAGGCTGTTTATAGTGATGA+TGG | 0.431282 | 8.2:+220673 | MS.gene95050:CDS |
| TTCAAGATTGGTTTCTTCTC+GGG | 0.438391 | 8.2:+222931 | MS.gene95050:intron |
| AGTTTATTGTGGGTGGGTGT+TGG | 0.447717 | 8.2:-220508 | None:intergenic |
| ACACAACTCACCACATCCTC+AGG | 0.452174 | 8.2:-221964 | None:intergenic |
| ACCACATCCTCAGGGTCATC+GGG | 0.452351 | 8.2:-221955 | None:intergenic |
| GTTGGAGATTGGGTGGAAGT+GGG | 0.456301 | 8.2:-220490 | None:intergenic |
| AAGAAGATGCAAGGTGGTAG+CGG | 0.461653 | 8.2:+219781 | None:intergenic |
| TTGTTTGTAAGTAGAAAGAT+TGG | 0.462862 | 8.2:-219848 | None:intergenic |
| GCCTGAACTCTAGTGCCAAC+AGG | 0.466178 | 8.2:-220655 | None:intergenic |
| AGCAGTGGCAAGAAGTTCTT+CGG | 0.466990 | 8.2:-220452 | None:intergenic |
| TACAATCGAGAATGATGATT+AGG | 0.470705 | 8.2:+223077 | MS.gene95050:CDS |
| TAGCTGACATAATAACCATT+TGG | 0.474920 | 8.2:-220730 | None:intergenic |
| CACCACATCCTCAGGGTCAT+CGG | 0.475099 | 8.2:-221956 | None:intergenic |
| GGTGTGACTGGAAGTGGGAA+AGG | 0.475251 | 8.2:+223006 | MS.gene95050:CDS |
| AGGTAGATCCCGCTAACATA+AGG | 0.476232 | 8.2:+221788 | MS.gene95050:intron |
| TCGACATACTCAGAATTAGA+TGG | 0.482981 | 8.2:-219993 | None:intergenic |
| TGAATTGGCCTTATGTTAGC+GGG | 0.489549 | 8.2:-221796 | None:intergenic |
| ATTATGTCAGCTATGACACT+TGG | 0.510217 | 8.2:+220740 | MS.gene95050:CDS |
| GTCGAGGCTTACACACCAAA+TGG | 0.519193 | 8.2:+220715 | MS.gene95050:CDS |
| AAAATAAGCGGCAAAATGCT+TGG | 0.521225 | 8.2:+222282 | MS.gene95050:CDS |
| AGGCTGTTTATAGTGATGAT+GGG | 0.524754 | 8.2:+220674 | MS.gene95050:CDS |
| CGTACATACCAGTTTATTGT+GGG | 0.530390 | 8.2:-220518 | None:intergenic |
| AGAAGATGCAAGGTGGTAGC+GGG | 0.534654 | 8.2:+219782 | None:intergenic |
| TTATGTCAGCTATGACACTT+GGG | 0.535353 | 8.2:+220741 | MS.gene95050:CDS |
| ACATACCAGTTTATTGTGGG+TGG | 0.536199 | 8.2:-220515 | None:intergenic |
| AGTTGCTGAAGCTACAAAGC+AGG | 0.562918 | 8.2:+221855 | MS.gene95050:CDS |
| TCCTGATGATCCTCAAGGAA+AGG | 0.563297 | 8.2:+222981 | MS.gene95050:CDS |
| CTACAAAGCAGGCTATCAAA+CGG | 0.564191 | 8.2:+221866 | MS.gene95050:CDS |
| GGTGGGTGTTGGAGATTGGG+TGG | 0.565121 | 8.2:-220497 | None:intergenic |
| ACGTACATACCAGTTTATTG+TGG | 0.565424 | 8.2:-220519 | None:intergenic |
| ATAAAGAGAAAGAAGATGCA+AGG | 0.565982 | 8.2:+219772 | None:intergenic |
| AAATCTCCTGATGATCCTCA+AGG | 0.567592 | 8.2:+222976 | MS.gene95050:CDS |
| GCAAGGTGGTAGCGGGCGTG+AGG | 0.569536 | 8.2:+219789 | MS.gene95050:CDS |
| CAAACGGAAAATTGCGCAAG+CGG | 0.570501 | 8.2:+221882 | MS.gene95050:CDS |
| CATCAACACAAATTTCCTGT+TGG | 0.571494 | 8.2:+220640 | MS.gene95050:CDS |
| GATGATCCTCAAGGAAAGGT+TGG | 0.575071 | 8.2:+222985 | MS.gene95050:CDS |
| GCCCGATGACCCTGAGGATG+TGG | 0.576654 | 8.2:+221954 | MS.gene95050:CDS |
| AACATAAGGCCAATTCAAGA+AGG | 0.580826 | 8.2:+221802 | MS.gene95050:CDS |
| ATTTGGTGTGTAAGCCTCGA+CGG | 0.580845 | 8.2:-220713 | None:intergenic |
| TTTATAGTGATGATGGGGAG+TGG | 0.581469 | 8.2:+220680 | MS.gene95050:CDS |
| GGCTGTTTATAGTGATGATG+GGG | 0.588465 | 8.2:+220675 | MS.gene95050:CDS |
| AGGTTGGTGTGACTGGAAGT+GGG | 0.590449 | 8.2:+223001 | MS.gene95050:CDS |
| CATACCAGTTTATTGTGGGT+GGG | 0.590879 | 8.2:-220514 | None:intergenic |
| CAGCAGTTCCAGACAACCAA+GGG | 0.593266 | 8.2:+222305 | MS.gene95050:CDS |
| ACTCGCTCAGCTTCAACCAA+AGG | 0.606860 | 8.2:-221835 | None:intergenic |
| AGATTGGTTTCTTCTCGGGA+AGG | 0.610846 | 8.2:+222935 | MS.gene95050:intron |
| AAGAGAAAGAAGATGCAAGG+TGG | 0.627035 | 8.2:+219775 | None:intergenic |
| CACTTGGGGTAATAAAGAAG+AGG | 0.630391 | 8.2:+220756 | MS.gene95050:CDS |
| TTGAAGTCACCCAAAATAAG+CGG | 0.630424 | 8.2:+222270 | MS.gene95050:CDS |
| GCAGCAGTTCCAGACAACCA+AGG | 0.644897 | 8.2:+222304 | MS.gene95050:CDS |
| CACAACTCACCACATCCTCA+GGG | 0.646183 | 8.2:-221963 | None:intergenic |
| TAATTCTGAGTATGTCGACA+TGG | 0.651465 | 8.2:+219998 | MS.gene95050:CDS |
| CTTTAAGTCTAAGATGCGGA+TGG | 0.652129 | 8.2:+222241 | MS.gene95050:CDS |
| GTCACACCAACCTTTCCTTG+AGG | 0.671537 | 8.2:-222991 | None:intergenic |
| GTGGTATGATGCAACCGTCG+AGG | 0.674698 | 8.2:+220699 | MS.gene95050:CDS |
| TATGTCAGCTATGACACTTG+GGG | 0.685361 | 8.2:+220742 | MS.gene95050:CDS |
| GATGGTCAAAGTGAGTATGA+AGG | 0.687636 | 8.2:-220621 | None:intergenic |
| ATGCCTTTAAGTCTAAGATG+CGG | 0.694744 | 8.2:+222237 | MS.gene95050:CDS |
| TATAGAGCCCGATGACCCTG+AGG | 0.709309 | 8.2:+221948 | MS.gene95050:CDS |
| CATGGAAAGAGAGCTCTCCG+AGG | 0.756940 | 8.2:+220016 | MS.gene95050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTGAAAAAAGAATATA+AGG | + | chr8.2:222788-222807 | MS.gene95050:intron | 10.0% |
| !!! | AATAAAAATGAATATTTTGT+AGG | + | chr8.2:221669-221688 | MS.gene95050:intron | 10.0% |
| !!! | ATAAAAATGAATATTTTGTA+GGG | + | chr8.2:221670-221689 | MS.gene95050:intron | 10.0% |
| !!! | TTTGTTTCTTTTTTTTTTTA+GGG | + | chr8.2:219884-219903 | MS.gene95050:intron | 10.0% |
| !!! | TTTTCTTGTTAATTAATAAT+GGG | - | chr8.2:220160-220179 | None:intergenic | 10.0% |
| !! | AAATAGATAAATAATGTTGT+TGG | - | chr8.2:220316-220335 | None:intergenic | 15.0% |
| !!! | AAACTCATTATAAAATTTTC+TGG | + | chr8.2:221127-221146 | MS.gene95050:intron | 15.0% |
| !!! | AACAATAAAAAGTATTTTAC+TGG | + | chr8.2:221378-221397 | MS.gene95050:intron | 15.0% |
| !!! | GTTGTTATTATTAATTGAAT+GGG | - | chr8.2:220138-220157 | None:intergenic | 15.0% |
| !!! | GTTTGTTTCTTTTTTTTTTT+AGG | + | chr8.2:219883-219902 | MS.gene95050:intron | 15.0% |
| !!! | GTTTTCTTGTTAATTAATAA+TGG | - | chr8.2:220161-220180 | None:intergenic | 15.0% |
| !!! | TGGAGTATTTTTTTTTTATA+GGG | - | chr8.2:221711-221730 | None:intergenic | 15.0% |
| !! | ACATGGAAAGAAAAAAAAAA+AGG | - | chr8.2:220891-220910 | None:intergenic | 20.0% |
| !! | AGAACACTTGTTTATATAAA+AGG | - | chr8.2:221576-221595 | None:intergenic | 20.0% |
| !! | ATAAAAAAAAAATACTCCAG+TGG | + | chr8.2:221712-221731 | MS.gene95050:intron | 20.0% |
| !! | ATATAAAACACAAATATCAG+TGG | - | chr8.2:222838-222857 | None:intergenic | 20.0% |
| !! | TAAAATGCTGAAGAAAAAAA+CGG | - | chr8.2:221056-221075 | None:intergenic | 20.0% |
| !! | TAATGCAATGGTAAATAAAT+TGG | - | chr8.2:220857-220876 | None:intergenic | 20.0% |
| !! | TAATTAATATTAGTGAGAGT+TGG | - | chr8.2:220365-220384 | None:intergenic | 20.0% |
| !!! | ACCTGTTTTTATAAAATGTA+GGG | + | chr8.2:221622-221641 | MS.gene95050:intron | 20.0% |
| !!! | AGCTAAAAAATATTTTCACA+TGG | - | chr8.2:222673-222692 | None:intergenic | 20.0% |
| !!! | ATTAATGTTTGCTATTGAAA+GGG | + | chr8.2:221464-221483 | MS.gene95050:intron | 20.0% |
| !!! | CTGGAGTATTTTTTTTTTAT+AGG | - | chr8.2:221712-221731 | None:intergenic | 20.0% |
| !!! | GGTTGTTATTATTAATTGAA+TGG | - | chr8.2:220139-220158 | None:intergenic | 20.0% |
| !!! | GTCTTAATAAATATTTTCCT+TGG | + | chr8.2:222032-222051 | MS.gene95050:intron | 20.0% |
| !!! | TACCTGTTTTTATAAAATGT+AGG | + | chr8.2:221621-221640 | MS.gene95050:intron | 20.0% |
| !!! | TCTTTTTTTTTTTAGGGTTA+GGG | + | chr8.2:219890-219909 | MS.gene95050:intron | 20.0% |
| !!! | TTCTTTTTTTTTTTAGGGTT+AGG | + | chr8.2:219889-219908 | MS.gene95050:intron | 20.0% |
| ! | AAAAGGTAGGAAACTAAAAA+GGG | - | chr8.2:221559-221578 | None:intergenic | 25.0% |
| ! | AATAGTAGAGAAATTGAGAA+AGG | - | chr8.2:222347-222366 | None:intergenic | 25.0% |
| ! | AGAAAAGAAAAGAAAAACCT+CGG | - | chr8.2:220036-220055 | None:intergenic | 25.0% |
| ! | AGACAGATTCATAATTCTAT+AGG | - | chr8.2:221508-221527 | None:intergenic | 25.0% |
| ! | AGGGTCCAAAAAATATATAT+AGG | - | chr8.2:221540-221559 | None:intergenic | 25.0% |
| ! | CACTTGTTTATATAAAAGGT+AGG | - | chr8.2:221572-221591 | None:intergenic | 25.0% |
| ! | GACAGATTCATAATTCTATA+GGG | - | chr8.2:221507-221526 | None:intergenic | 25.0% |
| ! | GCTTCAAATTGAAATTGAAA+AGG | + | chr8.2:220095-220114 | MS.gene95050:intron | 25.0% |
| ! | GGGTCCAAAAAATATATATA+GGG | - | chr8.2:221539-221558 | None:intergenic | 25.0% |
| ! | TAAAAGGTAGGAAACTAAAA+AGG | - | chr8.2:221560-221579 | None:intergenic | 25.0% |
| ! | TATGTCTTAAAGTGACTAAT+GGG | + | chr8.2:222443-222462 | MS.gene95050:intron | 25.0% |
| ! | TGATGAGTAATGAATAGATT+CGG | - | chr8.2:220570-220589 | None:intergenic | 25.0% |
| ! | TTAGTTGAGAAAAGAAATAG+AGG | + | chr8.2:221240-221259 | MS.gene95050:intron | 25.0% |
| ! | TTCTCAACTAAACAAAAAAC+TGG | - | chr8.2:221231-221250 | None:intergenic | 25.0% |
| ! | TTGTTTGTAAGTAGAAAGAT+TGG | - | chr8.2:219851-219870 | None:intergenic | 25.0% |
| !! | ATAAATTCAACAACTTTTCC+AGG | - | chr8.2:222773-222792 | None:intergenic | 25.0% |
| !! | ATTGTGAAAATTCTAGAGAT+CGG | - | chr8.2:222815-222834 | None:intergenic | 25.0% |
| !! | TAAATTCAACAACTTTTCCA+GGG | - | chr8.2:222772-222791 | None:intergenic | 25.0% |
| !! | TTTTCTGCAAATGTATTTCT+TGG | + | chr8.2:222098-222117 | MS.gene95050:intron | 25.0% |
| !!! | CATTAATGTTTGCTATTGAA+AGG | + | chr8.2:221463-221482 | MS.gene95050:intron | 25.0% |
| !!! | CCTGTTTTTATAAAATGTAG+GGG | + | chr8.2:221623-221642 | MS.gene95050:intron | 25.0% |
| !!! | CTATGTTTTTCACTGTTTTT+AGG | + | chr8.2:220597-220616 | MS.gene95050:intron | 25.0% |
| !!! | TCGTCCCTATATATATTTTT+TGG | + | chr8.2:221532-221551 | MS.gene95050:intron | 25.0% |
| !!! | TTTTTAGTTACTGATTTCCA+AGG | + | chr8.2:221737-221756 | MS.gene95050:intron | 25.0% |
| AATCTATTTACCCCTTGAAT+CGG | + | chr8.2:222703-222722 | MS.gene95050:intron | 30.0% | |
| ACAATACAGATGCAATAAGT+TGG | - | chr8.2:221021-221040 | None:intergenic | 30.0% | |
| AGAAAACTGGCAGATAAATT+TGG | - | chr8.2:222153-222172 | None:intergenic | 30.0% | |
| AGGAATGAAATTTCTCAACT+TGG | - | chr8.2:221294-221313 | None:intergenic | 30.0% | |
| AGGGGCTAAAAATTGTTTAT+AGG | + | chr8.2:221641-221660 | MS.gene95050:intron | 30.0% | |
| ATTTAAGGAGACATTGGAAT+TGG | - | chr8.2:220406-220425 | None:intergenic | 30.0% | |
| GTATGTCTTAAAGTGACTAA+TGG | + | chr8.2:222442-222461 | MS.gene95050:intron | 30.0% | |
| TAGCTGACATAATAACCATT+TGG | - | chr8.2:220733-220752 | None:intergenic | 30.0% | |
| TAGTTTCTATGCAAGAATGT+AGG | + | chr8.2:222409-222428 | MS.gene95050:intron | 30.0% | |
| TATGTTAGGATGGTCAAAAA+TGG | - | chr8.2:222484-222503 | None:intergenic | 30.0% | |
| TCAGTAACTAAAAAAACCAC+TGG | - | chr8.2:221731-221750 | None:intergenic | 30.0% | |
| TGAGTATCAAATCATGTAAC+AGG | + | chr8.2:221160-221179 | MS.gene95050:intron | 30.0% | |
| TGCAATGGTAAATAAATTGG+AGG | - | chr8.2:220854-220873 | None:intergenic | 30.0% | |
| TGTAGAATTTAAGGAGACAT+TGG | - | chr8.2:220412-220431 | None:intergenic | 30.0% | |
| TGTTGTATGTATCTATCTCA+TGG | - | chr8.2:220265-220284 | None:intergenic | 30.0% | |
| TTACAAACAACAACTTCATC+AGG | + | chr8.2:219861-219880 | MS.gene95050:CDS | 30.0% | |
| TTGTTCTTTCCATTTCAACA+AGG | - | chr8.2:221363-221382 | None:intergenic | 30.0% | |
| ! | AAGTTCTATGTGATTTTTGC+TGG | + | chr8.2:220945-220964 | MS.gene95050:intron | 30.0% |
| ! | AATTTATCTGCCAGTTTTCT+AGG | + | chr8.2:222153-222172 | MS.gene95050:intron | 30.0% |
| ! | AGTTAGCAAACATGTCATTT+AGG | - | chr8.2:222183-222202 | None:intergenic | 30.0% |
| ! | ATAAGTTGGAAATGCAATTG+TGG | - | chr8.2:221007-221026 | None:intergenic | 30.0% |
| ! | ATATGTTGCTTGCTTATTAC+AGG | + | chr8.2:221768-221787 | MS.gene95050:intron | 30.0% |
| ! | CCCCTACATTTTATAAAAAC+AGG | - | chr8.2:221626-221645 | None:intergenic | 30.0% |
| ! | GTTAGCAAACATGTCATTTA+GGG | - | chr8.2:222182-222201 | None:intergenic | 30.0% |
| ! | TATTTCATTTTGCTTAGCAG+TGG | - | chr8.2:220470-220489 | None:intergenic | 30.0% |
| ! | TTGTGAAAATTCTAGAGATC+GGG | - | chr8.2:222814-222833 | None:intergenic | 30.0% |
| !!! | AGAAAAGCATTTTCATCTGA+AGG | + | chr8.2:223050-223069 | MS.gene95050:CDS | 30.0% |
| !!! | TTTTTTTAGGGTTAGGGTTA+GGG | + | chr8.2:219896-219915 | MS.gene95050:intron | 30.0% |
| !!! | TTTTTTTTAGGGTTAGGGTT+AGG | + | chr8.2:219895-219914 | MS.gene95050:intron | 30.0% |
| AAAAGTAATACCATCAACCC+TGG | + | chr8.2:222752-222771 | MS.gene95050:intron | 35.0% | |
| AAAATAAGCGGCAAAATGCT+TGG | + | chr8.2:222282-222301 | MS.gene95050:CDS | 35.0% | |
| AAACGCTTCAATAAACGTGA+TGG | - | chr8.2:221207-221226 | None:intergenic | 35.0% | |
| AACATAAGGCCAATTCAAGA+AGG | + | chr8.2:221802-221821 | MS.gene95050:CDS | 35.0% | |
| AACCAAGGGAAAAGCAAAAA+AGG | + | chr8.2:222319-222338 | MS.gene95050:CDS | 35.0% | |
| AACGCTTCAATAAACGTGAT+GGG | - | chr8.2:221206-221225 | None:intergenic | 35.0% | |
| AATGTATGCAGATGTAATGC+AGG | - | chr8.2:220829-220848 | None:intergenic | 35.0% | |
| ACGTACATACCAGTTTATTG+TGG | - | chr8.2:220522-220541 | None:intergenic | 35.0% | |
| AGAGGAATCACTTTATCCTA+GGG | + | chr8.2:221258-221277 | MS.gene95050:intron | 35.0% | |
| AGCAAGATAGATAGAAGTGA+TGG | - | chr8.2:220220-220239 | None:intergenic | 35.0% | |
| AGGCTGTTTATAGTGATGAT+GGG | + | chr8.2:220674-220693 | MS.gene95050:CDS | 35.0% | |
| ATGTATGCAGATGTAATGCA+GGG | - | chr8.2:220828-220847 | None:intergenic | 35.0% | |
| ATTATGTCAGCTATGACACT+TGG | + | chr8.2:220740-220759 | MS.gene95050:CDS | 35.0% | |
| CAACAGGAAATTTGTGTTGA+TGG | - | chr8.2:220642-220661 | None:intergenic | 35.0% | |
| CATCAACACAAATTTCCTGT+TGG | + | chr8.2:220640-220659 | MS.gene95050:CDS | 35.0% | |
| CCAAATATATCATGCACTCA+TGG | - | chr8.2:221094-221113 | None:intergenic | 35.0% | |
| CCATGAGTGCATGATATATT+TGG | + | chr8.2:221091-221110 | MS.gene95050:intron | 35.0% | |
| CGTACATACCAGTTTATTGT+GGG | - | chr8.2:220521-220540 | None:intergenic | 35.0% | |
| GCAAATGTATTTCTTGGTAG+TGG | + | chr8.2:222104-222123 | MS.gene95050:intron | 35.0% | |
| GCAACATATGAAGTTTACCT+TGG | - | chr8.2:221757-221776 | None:intergenic | 35.0% | |
| GCAAGATAGATAGAAGTGAT+GGG | - | chr8.2:220219-220238 | None:intergenic | 35.0% | |
| GTACGACATAGATAATGCAA+TGG | - | chr8.2:220869-220888 | None:intergenic | 35.0% | |
| TAATTCTGAGTATGTCGACA+TGG | + | chr8.2:219998-220017 | MS.gene95050:CDS | 35.0% | |
| TAGAACAAGAGATCAAACCA+AGG | - | chr8.2:222052-222071 | None:intergenic | 35.0% | |
| TAGAGGAATCACTTTATCCT+AGG | + | chr8.2:221257-221276 | MS.gene95050:intron | 35.0% | |
| TCAACAGTTCCTTCTTGAAT+TGG | - | chr8.2:221814-221833 | None:intergenic | 35.0% | |
| TCCTTAAATTCTACAACACC+AGG | + | chr8.2:220417-220436 | MS.gene95050:intron | 35.0% | |
| TCGACATACTCAGAATTAGA+TGG | - | chr8.2:219996-220015 | None:intergenic | 35.0% | |
| TCTCTAACCTGAAAAGAGAA+GGG | - | chr8.2:219957-219976 | None:intergenic | 35.0% | |
| TGTATGTATCTATCTCATGG+CGG | - | chr8.2:220262-220281 | None:intergenic | 35.0% | |
| TTATGTCAGCTATGACACTT+GGG | + | chr8.2:220741-220760 | MS.gene95050:CDS | 35.0% | |
| TTCTCTAACCTGAAAAGAGA+AGG | - | chr8.2:219958-219977 | None:intergenic | 35.0% | |
| TTGAAGTCACCCAAAATAAG+CGG | + | chr8.2:222270-222289 | MS.gene95050:CDS | 35.0% | |
| TTTAGGGAATCCTAGAAAAC+TGG | - | chr8.2:222166-222185 | None:intergenic | 35.0% | |
| ! | AAGCATTTTCATCTGAAGGA+TGG | + | chr8.2:223054-223073 | MS.gene95050:CDS | 35.0% |
| ! | ATGCCTTTAAGTCTAAGATG+CGG | + | chr8.2:222237-222256 | MS.gene95050:CDS | 35.0% |
| ! | CTTTTGTGATGTATTCACTG+TGG | + | chr8.2:222902-222921 | MS.gene95050:intron | 35.0% |
| ! | GAAAATGCTTTTCTCTTCTC+TGG | - | chr8.2:223044-223063 | None:intergenic | 35.0% |
| ! | GGCATGTATTTTCTTACGTT+TGG | - | chr8.2:222222-222241 | None:intergenic | 35.0% |
| ! | TTGTAAGTTGGATAGGAATG+AGG | + | chr8.2:222726-222745 | MS.gene95050:intron | 35.0% |
| ! | TTTGATTCCCTTCTCTTTTC+AGG | + | chr8.2:219947-219966 | MS.gene95050:intron | 35.0% |
| !! | AAGCATTTTGCCGCTTATTT+TGG | - | chr8.2:222283-222302 | None:intergenic | 35.0% |
| !! | ACCTGGTGTTGTAGAATTTA+AGG | - | chr8.2:220421-220440 | None:intergenic | 35.0% |
| !! | AGCATTTTGCCGCTTATTTT+GGG | - | chr8.2:222282-222301 | None:intergenic | 35.0% |
| !! | CTTCAAGATTGGTTTCTTCT+CGG | + | chr8.2:222930-222949 | MS.gene95050:intron | 35.0% |
| !! | TTCAAGATTGGTTTCTTCTC+GGG | + | chr8.2:222931-222950 | MS.gene95050:intron | 35.0% |
| !! | TTGAATTGGCCTTATGTTAG+CGG | - | chr8.2:221800-221819 | None:intergenic | 35.0% |
| !!! | CATCTGTTGATTTTCAGTCA+CGG | + | chr8.2:221905-221924 | MS.gene95050:CDS | 35.0% |
| !!! | TACCTTTTTTGCTTTTCCCT+TGG | - | chr8.2:222324-222343 | None:intergenic | 35.0% |
| AAATCTCCTGATGATCCTCA+AGG | + | chr8.2:222976-222995 | MS.gene95050:CDS | 40.0% | |
| ACATACCAGTTTATTGTGGG+TGG | - | chr8.2:220518-220537 | None:intergenic | 40.0% | |
| AGAAGGAACTGTTGATCCTT+TGG | + | chr8.2:221819-221838 | MS.gene95050:CDS | 40.0% | |
| CACTTGGGGTAATAAAGAAG+AGG | + | chr8.2:220756-220775 | MS.gene95050:CDS | 40.0% | |
| CAGGCTGTTTATAGTGATGA+TGG | + | chr8.2:220673-220692 | MS.gene95050:CDS | 40.0% | |
| CATACCAGTTTATTGTGGGT+GGG | - | chr8.2:220517-220536 | None:intergenic | 40.0% | |
| CATAGTAGCACACAAAGTAC+AGG | - | chr8.2:221314-221333 | None:intergenic | 40.0% | |
| CATCCGCATCTTAGACTTAA+AGG | - | chr8.2:222243-222262 | None:intergenic | 40.0% | |
| CCATGTTAGAGAAACAGAGT+TGG | + | chr8.2:220905-220924 | MS.gene95050:intron | 40.0% | |
| CTACAAAGCAGGCTATCAAA+CGG | + | chr8.2:221866-221885 | MS.gene95050:CDS | 40.0% | |
| GATGGTCAAAGTGAGTATGA+AGG | - | chr8.2:220624-220643 | None:intergenic | 40.0% | |
| GTTAGGATGGTCAAAAATGG+AGG | - | chr8.2:222481-222500 | None:intergenic | 40.0% | |
| TATCTATCTTGCTTCTGTGC+AGG | + | chr8.2:220227-220246 | MS.gene95050:intron | 40.0% | |
| TATGTCAGCTATGACACTTG+GGG | + | chr8.2:220742-220761 | MS.gene95050:CDS | 40.0% | |
| TGTTCTGTACTCCTTAGAGA+GGG | + | chr8.2:221590-221609 | MS.gene95050:intron | 40.0% | |
| TTCTAGCCTGAATTTACCAC+AGG | + | chr8.2:222574-222593 | MS.gene95050:intron | 40.0% | |
| TTCTCTCCTGTGGTAAATTC+AGG | - | chr8.2:222583-222602 | None:intergenic | 40.0% | |
| TTGATGCAATCCTAGTCCTA+TGG | + | chr8.2:220800-220819 | MS.gene95050:intron | 40.0% | |
| TTTGCAGCACCTTGTTGAAA+TGG | + | chr8.2:221351-221370 | MS.gene95050:intron | 40.0% | |
| ! | AACAACTTTTCCAGGGTTGA+TGG | - | chr8.2:222765-222784 | None:intergenic | 40.0% |
| ! | CAACTTACAACCGATTCAAG+GGG | - | chr8.2:222716-222735 | None:intergenic | 40.0% |
| ! | CCAACTCTGTTTCTCTAACA+TGG | - | chr8.2:220908-220927 | None:intergenic | 40.0% |
| ! | CCAACTTACAACCGATTCAA+GGG | - | chr8.2:222717-222736 | None:intergenic | 40.0% |
| ! | CTTTAAGTCTAAGATGCGGA+TGG | + | chr8.2:222241-222260 | MS.gene95050:CDS | 40.0% |
| ! | GAATCGGTTGTAAGTTGGAT+AGG | + | chr8.2:222719-222738 | MS.gene95050:intron | 40.0% |
| ! | GGCTGTTTATAGTGATGATG+GGG | + | chr8.2:220675-220694 | MS.gene95050:CDS | 40.0% |
| ! | GTACTTTTAGTCCCTCTCTA+AGG | - | chr8.2:221604-221623 | None:intergenic | 40.0% |
| ! | TAAGTTGGATAGGAATGAGG+AGG | + | chr8.2:222729-222748 | MS.gene95050:intron | 40.0% |
| ! | TCCAACTTACAACCGATTCA+AGG | - | chr8.2:222718-222737 | None:intergenic | 40.0% |
| !! | CATTGACTCGTATGTTAGGA+TGG | - | chr8.2:222494-222513 | None:intergenic | 40.0% |
| !! | CTGACATTGACTCGTATGTT+AGG | - | chr8.2:222498-222517 | None:intergenic | 40.0% |
| !! | CTGTGGTTTTGCTTCAAGAT+TGG | + | chr8.2:222919-222938 | MS.gene95050:intron | 40.0% |
| !! | TGAATTGGCCTTATGTTAGC+GGG | - | chr8.2:221799-221818 | None:intergenic | 40.0% |
| !! | TTTATAGTGATGATGGGGAG+TGG | + | chr8.2:220680-220699 | MS.gene95050:CDS | 40.0% |
| AACACCCACCCACAATAAAC+TGG | + | chr8.2:220510-220529 | MS.gene95050:CDS | 45.0% | |
| ACCTTTCCTTGAGGATCATC+AGG | - | chr8.2:222985-223004 | None:intergenic | 45.0% | |
| AGCAGTGGCAAGAAGTTCTT+CGG | - | chr8.2:220455-220474 | None:intergenic | 45.0% | |
| AGGACTAGGATTGCATCAAG+TGG | - | chr8.2:220799-220818 | None:intergenic | 45.0% | |
| AGGTAGATCCCGCTAACATA+AGG | + | chr8.2:221788-221807 | MS.gene95050:intron | 45.0% | |
| AGTTGCTGAAGCTACAAAGC+AGG | + | chr8.2:221855-221874 | MS.gene95050:CDS | 45.0% | |
| AGTTTATTGTGGGTGGGTGT+TGG | - | chr8.2:220511-220530 | None:intergenic | 45.0% | |
| CAAACGGAAAATTGCGCAAG+CGG | + | chr8.2:221882-221901 | MS.gene95050:CDS | 45.0% | |
| CATTCTGTTGATGCTGAGTG+AGG | - | chr8.2:221424-221443 | None:intergenic | 45.0% | |
| CCCTTGAATCGGTTGTAAGT+TGG | + | chr8.2:222714-222733 | MS.gene95050:intron | 45.0% | |
| GATGATCCTCAAGGAAAGGT+TGG | + | chr8.2:222985-223004 | MS.gene95050:CDS | 45.0% | |
| GCAATGATACTTCTCTCCTG+TGG | - | chr8.2:222593-222612 | None:intergenic | 45.0% | |
| GGAATCACTTTATCCTAGGG+AGG | + | chr8.2:221261-221280 | MS.gene95050:intron | 45.0% | |
| GTGTTCTGTACTCCTTAGAG+AGG | + | chr8.2:221589-221608 | MS.gene95050:intron | 45.0% | |
| TCCTGATGATCCTCAAGGAA+AGG | + | chr8.2:222981-223000 | MS.gene95050:CDS | 45.0% | |
| !! | AGATTGGTTTCTTCTCGGGA+AGG | + | chr8.2:222935-222954 | MS.gene95050:intron | 45.0% |
| !! | ATTTGGTGTGTAAGCCTCGA+CGG | - | chr8.2:220716-220735 | None:intergenic | 45.0% |
| !! | TTGCTTTTCCCTTGGTTGTC+TGG | - | chr8.2:222316-222335 | None:intergenic | 45.0% |
| ACACAACTCACCACATCCTC+AGG | - | chr8.2:221967-221986 | None:intergenic | 50.0% | |
| ACTCGCTCAGCTTCAACCAA+AGG | - | chr8.2:221838-221857 | None:intergenic | 50.0% | |
| ACTTGGAAGTAAGCCTCCCT+AGG | - | chr8.2:221277-221296 | None:intergenic | 50.0% | |
| CACAACTCACCACATCCTCA+GGG | - | chr8.2:221966-221985 | None:intergenic | 50.0% | |
| CAGCAGTTCCAGACAACCAA+GGG | + | chr8.2:222305-222324 | MS.gene95050:CDS | 50.0% | |
| CTTCGGTCAAAGCAATGACC+TGG | - | chr8.2:220438-220457 | None:intergenic | 50.0% | |
| GATGTAATGCAGGGCTCCAT+AGG | - | chr8.2:220819-220838 | None:intergenic | 50.0% | |
| GGCTCTATACGAAGCTTTGC+AGG | - | chr8.2:221937-221956 | None:intergenic | 50.0% | |
| GTCACACCAACCTTTCCTTG+AGG | - | chr8.2:222994-223013 | None:intergenic | 50.0% | |
| GTCGAGGCTTACACACCAAA+TGG | + | chr8.2:220715-220734 | MS.gene95050:CDS | 50.0% | |
| GTTGGAGATTGGGTGGAAGT+GGG | - | chr8.2:220493-220512 | None:intergenic | 50.0% | |
| TCCTGTTGGCACTAGAGTTC+AGG | + | chr8.2:220654-220673 | MS.gene95050:CDS | 50.0% | |
| TGCACTCATGGCTCATGTCA+TGG | - | chr8.2:221082-221101 | None:intergenic | 50.0% | |
| TGTTGGAGATTGGGTGGAAG+TGG | - | chr8.2:220494-220513 | None:intergenic | 50.0% | |
| !! | AAGGTTGGTGTGACTGGAAG+TGG | + | chr8.2:223000-223019 | MS.gene95050:CDS | 50.0% |
| !! | AGGTTGGTGTGACTGGAAGT+GGG | + | chr8.2:223001-223020 | MS.gene95050:CDS | 50.0% |
| !! | CAAGGAAAGGTTGGTGTGAC+TGG | + | chr8.2:222994-223013 | MS.gene95050:CDS | 50.0% |
| !! | TCTATCTCATGGCGGACATC+AGG | - | chr8.2:220254-220273 | None:intergenic | 50.0% |
| ACCACATCCTCAGGGTCATC+GGG | - | chr8.2:221958-221977 | None:intergenic | 55.0% | |
| ATGCAGGGCTCCATAGGACT+AGG | - | chr8.2:220813-220832 | None:intergenic | 55.0% | |
| CACCACATCCTCAGGGTCAT+CGG | - | chr8.2:221959-221978 | None:intergenic | 55.0% | |
| CATGGAAAGAGAGCTCTCCG+AGG | + | chr8.2:220016-220035 | MS.gene95050:CDS | 55.0% | |
| GCAGCAGTTCCAGACAACCA+AGG | + | chr8.2:222304-222323 | MS.gene95050:CDS | 55.0% | |
| GCCTGAACTCTAGTGCCAAC+AGG | - | chr8.2:220658-220677 | None:intergenic | 55.0% | |
| GGTGTGACTGGAAGTGGGAA+AGG | + | chr8.2:223006-223025 | MS.gene95050:CDS | 55.0% | |
| GTGGTATGATGCAACCGTCG+AGG | + | chr8.2:220699-220718 | MS.gene95050:CDS | 55.0% | |
| TATAGAGCCCGATGACCCTG+AGG | + | chr8.2:221948-221967 | MS.gene95050:CDS | 55.0% | |
| !! | GTGGGTGGGTGTTGGAGATT+GGG | - | chr8.2:220503-220522 | None:intergenic | 55.0% |
| !! | TGTGGGTGGGTGTTGGAGAT+TGG | - | chr8.2:220504-220523 | None:intergenic | 55.0% |
| !! | GGTGGGTGTTGGAGATTGGG+TGG | - | chr8.2:220500-220519 | None:intergenic | 60.0% |
| GCCCGATGACCCTGAGGATG+TGG | + | chr8.2:221954-221973 | MS.gene95050:CDS | 65.0% | |
| !! | GCAAGGTGGTAGCGGGCGTG+AGG | + | chr8.2:219789-219808 | MS.gene95050:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 219787 | 223098 | 219787 | ID=MS.gene95050 |
| chr8.2 | mRNA | 219787 | 223098 | 219787 | ID=MS.gene95050.t1;Parent=MS.gene95050 |
| chr8.2 | exon | 219787 | 219882 | 219787 | ID=MS.gene95050.t1.exon1;Parent=MS.gene95050.t1 |
| chr8.2 | CDS | 219787 | 219882 | 219787 | ID=cds.MS.gene95050.t1;Parent=MS.gene95050.t1 |
| chr8.2 | exon | 219969 | 220037 | 219969 | ID=MS.gene95050.t1.exon2;Parent=MS.gene95050.t1 |
| chr8.2 | CDS | 219969 | 220037 | 219969 | ID=cds.MS.gene95050.t1;Parent=MS.gene95050.t1 |
| chr8.2 | exon | 220439 | 220531 | 220439 | ID=MS.gene95050.t1.exon3;Parent=MS.gene95050.t1 |
| chr8.2 | CDS | 220439 | 220531 | 220439 | ID=cds.MS.gene95050.t1;Parent=MS.gene95050.t1 |
| chr8.2 | exon | 220619 | 220777 | 220619 | ID=MS.gene95050.t1.exon4;Parent=MS.gene95050.t1 |
| chr8.2 | CDS | 220619 | 220777 | 220619 | ID=cds.MS.gene95050.t1;Parent=MS.gene95050.t1 |
| chr8.2 | exon | 221790 | 221975 | 221790 | ID=MS.gene95050.t1.exon5;Parent=MS.gene95050.t1 |
| chr8.2 | CDS | 221790 | 221975 | 221790 | ID=cds.MS.gene95050.t1;Parent=MS.gene95050.t1 |
| chr8.2 | exon | 222212 | 222340 | 222212 | ID=MS.gene95050.t1.exon6;Parent=MS.gene95050.t1 |
| chr8.2 | CDS | 222212 | 222340 | 222212 | ID=cds.MS.gene95050.t1;Parent=MS.gene95050.t1 |
| chr8.2 | exon | 222937 | 223098 | 222937 | ID=MS.gene95050.t1.exon7;Parent=MS.gene95050.t1 |
| chr8.2 | CDS | 222937 | 223098 | 222937 | ID=cds.MS.gene95050.t1;Parent=MS.gene95050.t1 |
| Gene Sequence |
| Protein sequence |
