AlfalfaGEDB | MS.gene055623

M. sativa cultivar XinJiangDaYe / MS.gene055623

KEGG: K03872
GO: GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0019538 GO:0019941 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0051603 GO:0071704 GO:1901564 GO:1901575
PFAM: PF03931.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055623.t1	XP_013456162.1	100	98	0	0	1	98	1	98	1.90E-48	201.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055623.t1	Q2KII4	52.2	92	42	1	7	96	19	110	4.1e-20	98.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055623.t1	I3SR24	100.0	98	0	0	1	98	1	98	1.4e-48	201.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene055623	0.827626	1.41E-54	-1.69E-46
MS.gene049159	MS.gene055623	0.836001	1.21E-56	-1.69E-46
MS.gene049254	MS.gene055623	0.826476	2.66E-54	-1.69E-46
MS.gene049404	MS.gene055623	0.800249	1.57E-48	-1.69E-46
MS.gene049756	MS.gene055623	0.810781	9.72E-51	-1.69E-46
MS.gene050303	MS.gene055623	0.81935	1.22E-52	-1.69E-46
MS.gene050442	MS.gene055623	0.835202	1.92E-56	-1.69E-46
MS.gene050605	MS.gene055623	0.805065	1.60E-49	-1.69E-46
MS.gene050719	MS.gene055623	0.817102	3.92E-52	-1.69E-46
MS.gene050721	MS.gene055623	0.819602	1.07E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055623.t1	MTR_4g064903	100.000	98	0	0	1	98	1	98	7.47e-71	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055623.t1	AT5G59140	76.596	94	22	0	5	98	3	96	4.84e-51	155

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Find 15 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTAATTCAGGTTCAAT+AGG	0.336432	4.4:+41437738	None:intergenic
AACAAAAGAAAAGATGAAGA+AGG	0.540972	4.4:-41438618	None:intergenic
AACGACGAATTCGAATCCAT+CGG	0.681941	4.4:+41438571	None:intergenic
ACAAATCTTCTCAAGAATAG+TGG	0.454935	4.4:+41438318	None:intergenic
AGAATAGTGGAACTAATCTC+AGG	0.494240	4.4:+41438331	None:intergenic
AGAGGTAAGCATGTTGCGAA+TGG	0.589014	4.4:+41438520	None:intergenic
ATTAACTCCAAAGTTAATTC+AGG	0.360632	4.4:+41437729	None:intergenic
ATTAACTTTGGAGTTAATGA+TGG	0.475652	4.4:-41437724	MS.gene055623:CDS
ATTGGCATCTTGAATTTGCT+AGG	0.521974	4.4:-41438285	MS.gene055623:intron
CGCAACATGCTTACCTCTCC+AGG	0.383198	4.4:-41438515	MS.gene055623:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAATCTTCTCAAGAATAG+TGG	+	chr4.4:41437991-41438010	None:intergenic	30.0%
TGAATTGCAATGAGAATGTT+TGG	-	chr4.4:41438137-41438156	MS.gene055623:intron	30.0%
CTAAAAATGGTAAGGTTGCT+TGG	+	chr4.4:41438311-41438330	None:intergenic	35.0%
TAGAGGAAGAAAAACAAACC+TGG	+	chr4.4:41437812-41437831	None:intergenic	35.0%
TTGTAAACAGTGTTCAACTC+CGG	-	chr4.4:41438207-41438226	MS.gene055623:intron	35.0%
AACACTGTTTACAACGCATC+TGG	+	chr4.4:41438201-41438220	None:intergenic	40.0%
AACGACGAATTCGAATCCAT+CGG	+	chr4.4:41437738-41437757	None:intergenic	40.0%
ATGTGAATGTTTCCATGCCA+CGG	+	chr4.4:41438360-41438379	None:intergenic	40.0%
CACAAAAGCAATCACGAGAA+AGG	+	chr4.4:41438398-41438417	None:intergenic	40.0%
GAAGAAAAACAAACCTGGAG+AGG	+	chr4.4:41437807-41437826	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	41437701	41438627	41437701	ID=MS.gene055623
chr4.4	mRNA	41437701	41438627	41437701	ID=MS.gene055623.t1;Parent=MS.gene055623
chr4.4	exon	41438516	41438627	41438516	ID=MS.gene055623.t1.exon1;Parent=MS.gene055623.t1
chr4.4	CDS	41438516	41438627	41438516	ID=cds.MS.gene055623.t1;Parent=MS.gene055623.t1
chr4.4	exon	41438286	41438391	41438286	ID=MS.gene055623.t1.exon2;Parent=MS.gene055623.t1
chr4.4	CDS	41438286	41438391	41438286	ID=cds.MS.gene055623.t1;Parent=MS.gene055623.t1
chr4.4	exon	41437701	41437779	41437701	ID=MS.gene055623.t1.exon3;Parent=MS.gene055623.t1
chr4.4	CDS	41437701	41437779	41437701	ID=cds.MS.gene055623.t1;Parent=MS.gene055623.t1

Gene Sequence

>MS.gene055623

ATGAAGAAGGAAGACACAGTTAAACTGATCAGTTCCGATGGATTCGAATTCGTCGTTGACAAAGAAGCTGCCATGGTTTCACAAACCATTCGCAACATGCTTACCTCTCCAGGTTTGTTTTTCTTCCTCTATCACTTTACCTTTTTATACTTTTTCGATTAGTTCAATTAGGGTTACGAATTAGCGTTAATTCATATAAGGTTAAGATTGTTGAAGATGTGATCTGTTTTTGTTAGGGAGTTTTGCTGAAAGGGAACACGGACAAGTGACTTTTCCTGAGATTAGTTCCACTATTCTTGAGAAGATTTGTCAGTATTTTTATTGGCATCTTGAATTTGCTAGGTATTTCATTTTCTTATTTTCTTGTTAGAATTGCAATTGGAGAAAAATCTGAAATTTATGCACATTCATACACTTTACAATGAAATCTGAAATCTGAATTGCAATGAGAATGTTTGGCTGTTTTAAGCTCAAAAAAAGTTATTGTTTGTGTGAATCCAGATGCGTTGTAAACAGTGTTCAACTCCGGATTACCAGGGCCACTTTCCCTTGGGAATCGAAGGTTAACACAAAATATTGAAAATTATTGAGTGACTTGAAATTATAACCAAGCAACCTTACCATTTTTAGTTTACATTTGACCCGCTAGCCTGCGTCCGTGGCATGGAAACATTCACATCATCATTTTATAATACCTTTCTCGTGATTGCTTTTGTGGTAGTTGTAAAAGTTTGTTTTAGGTATTAGAGTTATGTTTTTCTTACAGAAGTTAAGCTTTTTAAATCCCTAAATTTTATTTTAGTGTTATTTAAATTATAGTGTTGATGTGTTTATGTTGGTTTTGCTAGTGGAAAGGACAGAGAGTTTCCTATTGAACCTGAATTAACTTTGGAGTTAATGATGGCTGCCAATTATCTACATACTTGA

Protein sequence

>MS.gene055623.t1

MKKEDTVKLISSDGFEFVVDKEAAMVSQTIRNMLTSPGSFAEREHGQVTFPEISSTILEKICQYFYWHLEFASGKDREFPIEPELTLELMMAANYLHT