AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95095

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95095.t1 MTR_4g134110 95.722 561 24 0 1 561 1 561 0.0 1000
MS.gene95095.t1 MTR_2g027130 59.123 570 216 6 2 557 11 577 0.0 555
MS.gene95095.t1 MTR_4g133450 95.016 321 16 0 241 561 5 325 0.0 540
MS.gene95095.t1 MTR_3g060660 44.902 559 279 10 6 541 14 566 1.01e-96 308
MS.gene95095.t1 MTR_3g060660 42.830 530 279 8 30 541 32 555 6.18e-81 266
MS.gene95095.t1 MTR_5g096080 38.801 567 310 10 6 543 15 573 2.80e-77 257
MS.gene95095.t1 MTR_3g007920 39.292 565 300 9 11 543 20 573 8.80e-76 253
MS.gene95095.t1 MTR_1g019490 26.510 596 355 18 5 540 259 831 1.34e-13 74.3
MS.gene95095.t1 MTR_3g101660 26.923 598 350 21 1 540 281 849 3.61e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95095.t1 AT1G12150 46.679 557 259 9 5 545 11 545 5.43e-124 375
MS.gene95095.t1 AT1G12150 46.679 557 259 9 5 545 11 545 5.43e-124 375
MS.gene95095.t1 AT5G55860 41.103 562 298 9 6 543 14 566 8.66e-79 261
MS.gene95095.t1 AT4G17210 32.496 557 309 9 7 543 17 526 1.68e-60 209
MS.gene95095.t1 AT2G26570 27.816 586 357 20 2 540 156 722 5.50e-20 94.7
MS.gene95095.t1 AT2G26570 27.816 586 357 20 2 540 156 722 5.50e-20 94.7
MS.gene95095.t1 AT4G33390 27.119 590 338 17 14 541 156 715 1.35e-12 71.2

Find 95 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCATATTCATTCTTTA+AGG 0.132312 8.2:+706213 None:intergenic
TTGTTTCCTCAACAGCTTTC+AGG 0.144522 8.2:+705423 None:intergenic
CAAGTTTCGCGTCTAGATTT+TGG 0.198421 8.2:+706179 None:intergenic
AAAGCTGCTGTTAGTTTATT+TGG 0.205244 8.2:-707242 MS.gene95095:CDS
GATAATCTTCATCTCTTTAA+TGG 0.206604 8.2:+705640 None:intergenic
AGCCTTTCTGCTCATCTCTT+TGG 0.236137 8.2:+705775 None:intergenic
GGCAAAGCTAGCAGCATTGC+AGG 0.267141 8.2:-706413 MS.gene95095:CDS
CTCAATCTCTGCACTTGTTT+CGG 0.295156 8.2:+706156 None:intergenic
GGCTGAAGCTGTGAGGAATA+AGG 0.309488 8.2:-706599 MS.gene95095:CDS
ACCCTATCCCTAAAAGTTAT+AGG 0.313601 8.2:-706559 MS.gene95095:CDS
CGGCAATTGAACGTGAATTA+AGG 0.320877 8.2:-705346 MS.gene95095:CDS
CTGTCTCCGATTGTAGCTTC+TGG 0.322489 8.2:+705816 None:intergenic
CGCTTTGATTGCTGATTCCT+TGG 0.325341 8.2:+706621 None:intergenic
GAGAAAATACTAGCTTCTTA+AGG 0.329746 8.2:+706014 None:intergenic
CTGCTTCTTCAGCCGCTGCT+CGG 0.339770 8.2:+705723 None:intergenic
AACATCCTGCAGTGTCTTTG+TGG 0.340359 8.2:+706054 None:intergenic
CTCTCGATTTCAAAATTTAG+TGG 0.349735 8.2:-705599 MS.gene95095:CDS
GTGCTCTATCGATGCTTTCA+TGG 0.374865 8.2:+706318 None:intergenic
TAACAGCAGCTTTGACAGAT+TGG 0.377262 8.2:+707252 None:intergenic
TTCTCTCACATTGTTCAGCT+TGG 0.378811 8.2:+706645 None:intergenic
GGCAAAAGCAGCAGAACAAA+AGG 0.397186 8.2:-705663 MS.gene95095:CDS
AGCAAGAACTCACGAAAATC+AGG 0.398382 8.2:-706459 MS.gene95095:CDS
AGAAAATACTAGCTTCTTAA+GGG 0.410056 8.2:+706015 None:intergenic
TGCTTCTTCAGCCGCTGCTC+GGG 0.410829 8.2:+705724 None:intergenic
CAAACTCTCAAGGGTCTCCT+TGG 0.423083 8.2:+706672 None:intergenic
CTAGCAGCATTGCAGGCAAC+AGG 0.427240 8.2:-706406 MS.gene95095:CDS
ATCGGTGAAGATGTACTATC+AGG 0.427441 8.2:+705311 None:intergenic
AGTGAAGGAATACCAAGAAT+TGG 0.430131 8.2:-705531 MS.gene95095:CDS
GCTGAAGCTGTGAGGAATAA+GGG 0.430229 8.2:-706598 MS.gene95095:CDS
CAAAATTTAGTGGTAAGATC+AGG 0.437222 8.2:-705589 MS.gene95095:CDS
TTATCTGAACAATCTGATAT+CGG 0.442943 8.2:+705293 None:intergenic
CTGCAAAATTTAACTCAGAA+AGG 0.449552 8.2:-706369 MS.gene95095:CDS
AGAAAGTGCTTTAACTTTCG+TGG 0.460333 8.2:+706708 None:intergenic
AAAGAAAGAGGCAGCTATCA+TGG 0.460393 8.2:-705504 MS.gene95095:CDS
CGAAACAAGTGCAGAGATTG+AGG 0.462554 8.2:-706155 MS.gene95095:CDS
TTGCTTGGAAGAATCTAGTT+CGG 0.465635 8.2:+706477 None:intergenic
CTGCAATGGAGACGGCTTTG+TGG 0.473961 8.2:-705397 MS.gene95095:CDS
GAAGAGGCGGGGCCTCAGCC+AGG 0.487515 8.2:-705881 MS.gene95095:CDS
ATCTCTCCAACCTCTCCCCT+TGG 0.489793 8.2:+707293 None:intergenic
AAAGCTTCATGCTTCCAAGA+TGG 0.490345 8.2:-706113 MS.gene95095:CDS
AGAGATGAGCAGAAAGGCTC+AGG 0.494120 8.2:-705771 MS.gene95095:CDS
GGCTTTGTGGTATGCAGAGA+TGG 0.496437 8.2:-705384 MS.gene95095:CDS
GCATCCACGGTACCTGGCTG+AGG 0.500220 8.2:+705869 None:intergenic
GATTCTCCAAGGGGAGAGGT+TGG 0.507507 8.2:-707299 MS.gene95095:CDS
GAAGAGTTTGAGTCACTGAA+TGG 0.508477 8.2:-705557 MS.gene95095:CDS
GCTTGGTTGTCAAACTCTCA+AGG 0.509583 8.2:+706662 None:intergenic
TCTGCAGAATGTATTTGAAA+AGG 0.511045 8.2:-706797 MS.gene95095:intron
AAGTTTCACAGAATCCATCT+TGG 0.515653 8.2:+706099 None:intergenic
TTGACAGCGAATCTGTCCTT+AGG 0.517593 8.2:+707206 None:intergenic
ACATTGGCATCCACGGTACC+TGG 0.522638 8.2:+705863 None:intergenic
AAAGGAGACACAGCTTATCC+TGG 0.526439 8.2:-706779 MS.gene95095:CDS
GGGTCTCCTTGGCCTTCTCA+AGG 0.530193 8.2:+706683 None:intergenic
TGAGGAAACAAAGGCTGCAA+TGG 0.535827 8.2:-705411 MS.gene95095:CDS
TAAAATCCAGAAGCTACAAT+CGG 0.536535 8.2:-705822 MS.gene95095:CDS
TGGTGAAGTAGCAGTTCCTA+AGG 0.542024 8.2:-707222 MS.gene95095:CDS
AGCTAACCTGAAAGCTGTTG+AGG 0.545144 8.2:-705429 MS.gene95095:CDS
AAGTTATAGGATATGAAGCT+TGG 0.546034 8.2:-706546 MS.gene95095:CDS
GAGCAAAGATATGAGAAAGG+TGG 0.550127 8.2:-707321 None:intergenic
TTAGAGCAAAGATATGAGAA+AGG 0.552619 8.2:-707324 None:intergenic
GAAAGAGCAAGATGAGCTGA+AGG 0.554843 8.2:-705966 MS.gene95095:CDS
AGCTGAAGCATCCCGAGCAG+CGG 0.556164 8.2:-705735 MS.gene95095:CDS
TTCTGACCTTGAGAAGGCCA+AGG 0.559843 8.2:-706689 MS.gene95095:CDS
AACAAAGGCTGCAATGGAGA+CGG 0.559947 8.2:-705405 MS.gene95095:CDS
AAATGAATTGGACATAAAGG+TGG 0.565184 8.2:-705453 MS.gene95095:CDS
AGCACTTTCTGACCTTGAGA+AGG 0.565647 8.2:-706695 MS.gene95095:CDS
GGTGGATTCTCCAAGGGGAG+AGG 0.568728 8.2:-707303 MS.gene95095:CDS
AAAAGAGCGCGGAAGAGGCG+GGG 0.571475 8.2:-705892 MS.gene95095:CDS
AAGAAACGAGTACACGACTA+AGG 0.572909 8.2:-706503 MS.gene95095:CDS
AGCCAAAGAGATGAGCAGAA+AGG 0.575074 8.2:-705777 MS.gene95095:CDS
GAACAATGTGAGAGAATCCA+AGG 0.577444 8.2:-706638 MS.gene95095:CDS
GTCACTGAATGGAAAAGTGA+AGG 0.582811 8.2:-705546 MS.gene95095:CDS
GATCTTGCTTCTAACCTCAC+TGG 0.583636 8.2:-705923 MS.gene95095:CDS
CTTGGTTGTCAAACTCTCAA+GGG 0.592536 8.2:+706663 None:intergenic
AGAATTGGCAGAAAAGAAAG+AGG 0.594912 8.2:-705516 MS.gene95095:CDS
GTAGAAGACATTGGCATCCA+CGG 0.595783 8.2:+705856 None:intergenic
TGAGAAAGGTGGATTCTCCA+AGG 0.601503 8.2:-707310 MS.gene95095:CDS
GAAAGCTGTTGAGGAAACAA+AGG 0.603568 8.2:-705420 MS.gene95095:CDS
GAGAAAGGTGGATTCTCCAA+GGG 0.604164 8.2:-707309 MS.gene95095:CDS
GCTATCATGGCTGAGTTGCA+AGG 0.607203 8.2:-705491 MS.gene95095:CDS
AGAACTCACGAAAATCAGGC+AGG 0.613981 8.2:-706455 MS.gene95095:CDS
GATGGCAAATTCTGCAAAAG+CGG 0.615271 8.2:-705366 MS.gene95095:CDS
AGAAGCCACAAAGACACTGC+AGG 0.623758 8.2:-706059 MS.gene95095:CDS
GGGGCCTCAGCCAGGTACCG+TGG 0.637542 8.2:-705873 MS.gene95095:CDS
GGTTGGAGAGATTGACACAA+GGG 0.639933 8.2:-707282 MS.gene95095:CDS
AAATTTAACTCAGAAAGGAT+CGG 0.640420 8.2:-706364 MS.gene95095:CDS
ACTTTGCATGTAGAAGACAT+TGG 0.657532 8.2:+705847 None:intergenic
GCAGCTTTGACAGATTGGAA+TGG 0.664413 8.2:+707257 None:intergenic
AGTTGCAAGGAATGTACACA+AGG 0.668978 8.2:-705478 MS.gene95095:CDS
AGGTTGGAGAGATTGACACA+AGG 0.675431 8.2:-707283 MS.gene95095:CDS
TGTCAAGAGAAGATCGTCAG+AGG 0.688771 8.2:-707189 MS.gene95095:intron
TCAAAGCGGCTGAAGCTGTG+AGG 0.688806 8.2:-706606 MS.gene95095:CDS
AGAAAGGTGGATTCTCCAAG+GGG 0.690833 8.2:-707308 MS.gene95095:CDS
AAGGATCGGTGAGCTCTCAG+AGG 0.706323 8.2:-706350 MS.gene95095:CDS
CGAGAGTCTACTTTGCACGT+CGG 0.708077 8.2:+705616 None:intergenic
CAAGGAATCAGCAATCAAAG+CGG 0.736218 8.2:-706620 MS.gene95095:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATTTATACCATAT+TGG - chr8.2:705429-705448 MS.gene95095:CDS 10.0%
!!! TAACTTACATAATTCTTTTT+GGG + chr8.2:705829-705848 None:intergenic 15.0%
!!! TTAACTTACATAATTCTTTT+TGG + chr8.2:705830-705849 None:intergenic 15.0%
!! ATCATCATATTCATTCTTTA+AGG + chr8.2:706372-706391 None:intergenic 20.0%
!! TGTACAAAAAAAATCCAATA+TGG + chr8.2:705446-705465 None:intergenic 20.0%
!!! TTCATATCCTATAACTTTTA+GGG + chr8.2:706033-706052 None:intergenic 20.0%
!!! TTTTGTACATATTGTTTCAT+AGG - chr8.2:705457-705476 MS.gene95095:CDS 20.0%
! AAATTTAACTCAGAAAGGAT+CGG - chr8.2:706218-706237 MS.gene95095:CDS 25.0%
! GAAAAATGAATTGGACATAA+AGG - chr8.2:707126-707145 MS.gene95095:intron 25.0%
! GATAATCTTCATCTCTTTAA+TGG + chr8.2:706945-706964 None:intergenic 25.0%
! TTATCTGAACAATCTGATAT+CGG + chr8.2:707292-707311 None:intergenic 25.0%
!! AGAAAATACTAGCTTCTTAA+GGG + chr8.2:706570-706589 None:intergenic 25.0%
!! ATCCTAGACATTTTAAATGT+TGG - chr8.2:705544-705563 MS.gene95095:CDS 25.0%
!! CTTCATATCCTATAACTTTT+AGG + chr8.2:706034-706053 None:intergenic 25.0%
!! TTCCAACATTTAAAATGTCT+AGG + chr8.2:705549-705568 None:intergenic 25.0%
!!! AGTTTTGTAAAAGTCGAATT+GGG + chr8.2:706318-706337 None:intergenic 25.0%
AAACAAGTTTCACACTTCTT+TGG - chr8.2:705759-705778 MS.gene95095:CDS 30.0%
AAATGAATTGGACATAAAGG+TGG - chr8.2:707129-707148 MS.gene95095:intron 30.0%
AAGTTATAGGATATGAAGCT+TGG - chr8.2:706036-706055 MS.gene95095:CDS 30.0%
CAAAATTTAGTGGTAAGATC+AGG - chr8.2:706993-707012 MS.gene95095:intron 30.0%
CTCTCGATTTCAAAATTTAG+TGG - chr8.2:706983-707002 MS.gene95095:intron 30.0%
CTGCAAAATTTAACTCAGAA+AGG - chr8.2:706213-706232 MS.gene95095:CDS 30.0%
GTACACAAGGAAAAATGAAT+TGG - chr8.2:707117-707136 MS.gene95095:intron 30.0%
TAAAATCCAGAAGCTACAAT+CGG - chr8.2:706760-706779 MS.gene95095:CDS 30.0%
TCTGCAGAATGTATTTGAAA+AGG - chr8.2:705785-705804 MS.gene95095:CDS 30.0%
TGACACACAAACAATACAAA+AGG - chr8.2:705636-705655 MS.gene95095:CDS 30.0%
! AAAGCTGCTGTTAGTTTATT+TGG - chr8.2:705340-705359 MS.gene95095:CDS 30.0%
! AAGAAGTGTGAAACTTGTTT+AGG + chr8.2:705759-705778 None:intergenic 30.0%
! AGAAGCTAGTATTTTCTCTT+AGG - chr8.2:706573-706592 MS.gene95095:CDS 30.0%
! GAGAAAATACTAGCTTCTTA+AGG + chr8.2:706571-706590 None:intergenic 30.0%
!! ATCCTATAACTTTTAGGGAT+AGG + chr8.2:706028-706047 None:intergenic 30.0%
!! CAGTTTTGTAAAAGTCGAAT+TGG + chr8.2:706319-706338 None:intergenic 30.0%
!! GAAAAAGCTAGAACTTGTTT+TGG - chr8.2:706883-706902 MS.gene95095:intron 30.0%
!! TCCTATAACTTTTAGGGATA+GGG + chr8.2:706027-706046 None:intergenic 30.0%
!!! TCTAGATTTTGGATTAGTTC+TGG + chr8.2:706395-706414 None:intergenic 30.0%
AAGTTTCACAGAATCCATCT+TGG + chr8.2:706486-706505 None:intergenic 35.0%
ACCCTATCCCTAAAAGTTAT+AGG - chr8.2:706023-706042 MS.gene95095:CDS 35.0%
ACTTTGCATGTAGAAGACAT+TGG + chr8.2:706738-706757 None:intergenic 35.0%
AGAATTGGCAGAAAAGAAAG+AGG - chr8.2:707066-707085 MS.gene95095:intron 35.0%
AGTGAAGGAATACCAAGAAT+TGG - chr8.2:707051-707070 MS.gene95095:intron 35.0%
TTCACACAATACCTGATGTT+AGG - chr8.2:705608-705627 MS.gene95095:CDS 35.0%
TTGCTTGGAAGAATCTAGTT+CGG + chr8.2:706108-706127 None:intergenic 35.0%
! AGAAGAAGCACAGAAAAAAC+TGG - chr8.2:706343-706362 MS.gene95095:CDS 35.0%
! CTTTCTTTTCTGCCAATTCT+TGG + chr8.2:707066-707085 None:intergenic 35.0%
! TCAGGTATTGTGTGAAACTT+TGG + chr8.2:705604-705623 None:intergenic 35.0%
!! AGAAAGTGCTTTAACTTTCG+TGG + chr8.2:705877-705896 None:intergenic 35.0%
!! TACATAATTCTTTTTGGGCC+AGG + chr8.2:705824-705843 None:intergenic 35.0%
!!! TCTTTTTCAATTCACCAGTG+AGG + chr8.2:706676-706695 None:intergenic 35.0%
AAAGAAAGAGGCAGCTATCA+TGG - chr8.2:707078-707097 MS.gene95095:intron 40.0%
AAAGCTTCATGCTTCCAAGA+TGG - chr8.2:706469-706488 MS.gene95095:CDS 40.0%
AAGAAACGAGTACACGACTA+AGG - chr8.2:706079-706098 MS.gene95095:CDS 40.0%
AGCAAGAACTCACGAAAATC+AGG - chr8.2:706123-706142 MS.gene95095:CDS 40.0%
AGTTGCAAGGAATGTACACA+AGG - chr8.2:707104-707123 MS.gene95095:intron 40.0%
ATCGGTGAAGATGTACTATC+AGG + chr8.2:707274-707293 None:intergenic 40.0%
CAAGGAATCAGCAATCAAAG+CGG - chr8.2:705962-705981 MS.gene95095:CDS 40.0%
CGGCAATTGAACGTGAATTA+AGG - chr8.2:707236-707255 MS.gene95095:CDS 40.0%
CTCAATCTCTGCACTTGTTT+CGG + chr8.2:706429-706448 None:intergenic 40.0%
CTTGGTTGTCAAACTCTCAA+GGG + chr8.2:705922-705941 None:intergenic 40.0%
GAAAGCTGTTGAGGAAACAA+AGG - chr8.2:707162-707181 MS.gene95095:intron 40.0%
GAACAATGTGAGAGAATCCA+AGG - chr8.2:705944-705963 MS.gene95095:CDS 40.0%
GAAGAGTTTGAGTCACTGAA+TGG - chr8.2:707025-707044 MS.gene95095:intron 40.0%
GATGGCAAATTCTGCAAAAG+CGG - chr8.2:707216-707235 MS.gene95095:CDS 40.0%
GTCACTGAATGGAAAAGTGA+AGG - chr8.2:707036-707055 MS.gene95095:intron 40.0%
GTGTCAAATTGCCTAACATC+AGG + chr8.2:705622-705641 None:intergenic 40.0%
TGGTGAATTGAAAAAGAGCG+CGG - chr8.2:706679-706698 MS.gene95095:CDS 40.0%
TTCTCTCACATTGTTCAGCT+TGG + chr8.2:705940-705959 None:intergenic 40.0%
TTGTTTCCTCAACAGCTTTC+AGG + chr8.2:707162-707181 None:intergenic 40.0%
! AAAGTTTTTCCCATGACGAG+AGG + chr8.2:705663-705682 None:intergenic 40.0%
! AAGTTTTTCCCATGACGAGA+GGG + chr8.2:705662-705681 None:intergenic 40.0%
! AGAAGCACAGAAAAAACTGG+AGG - chr8.2:706346-706365 MS.gene95095:CDS 40.0%
! AGGGATAGGGTCTTTTCAAA+TGG + chr8.2:706014-706033 None:intergenic 40.0%
! CAAGTTTCGCGTCTAGATTT+TGG + chr8.2:706406-706425 None:intergenic 40.0%
! GATTTTCGTGAGTTCTTGCT+TGG + chr8.2:706123-706142 None:intergenic 40.0%
! TAACAGCAGCTTTGACAGAT+TGG + chr8.2:705333-705352 None:intergenic 40.0%
! TTGGGTTTCATTTTGTGCAG+AGG + chr8.2:706300-706319 None:intergenic 40.0%
!! GCAGGATTTTGATGCAGTTT+TGG - chr8.2:706145-706164 MS.gene95095:CDS 40.0%
!! GGATTTTGATGCAGTTTTGG+AGG - chr8.2:706148-706167 MS.gene95095:CDS 40.0%
!!! GCTAGAACTTGTTTTGGAAG+AGG - chr8.2:706889-706908 MS.gene95095:intron 40.0%
!!! TGTTTTGGAAGAGGCTAAAG+AGG - chr8.2:706898-706917 MS.gene95095:intron 40.0%
AAAGGAGACACAGCTTATCC+TGG - chr8.2:705803-705822 MS.gene95095:CDS 45.0%
AACAAAGGCTGCAATGGAGA+CGG - chr8.2:707177-707196 MS.gene95095:intron 45.0%
AACATCCTGCAGTGTCTTTG+TGG + chr8.2:706531-706550 None:intergenic 45.0%
AGAACTCACGAAAATCAGGC+AGG - chr8.2:706127-706146 MS.gene95095:CDS 45.0%
AGCACTTTCTGACCTTGAGA+AGG - chr8.2:705887-705906 MS.gene95095:CDS 45.0%
AGCCAAAGAGATGAGCAGAA+AGG - chr8.2:706805-706824 MS.gene95095:intron 45.0%
AGCCTTTCTGCTCATCTCTT+TGG + chr8.2:706810-706829 None:intergenic 45.0%
AGCTAACCTGAAAGCTGTTG+AGG - chr8.2:707153-707172 MS.gene95095:intron 45.0%
AGGTTGGAGAGATTGACACA+AGG - chr8.2:705299-705318 MS.gene95095:CDS 45.0%
CGAAACAAGTGCAGAGATTG+AGG - chr8.2:706427-706446 MS.gene95095:CDS 45.0%
GAAAGAGCAAGATGAGCTGA+AGG - chr8.2:706616-706635 MS.gene95095:CDS 45.0%
GATCTTGCTTCTAACCTCAC+TGG - chr8.2:706659-706678 MS.gene95095:CDS 45.0%
GCTGAAGCTGTGAGGAATAA+GGG - chr8.2:705984-706003 MS.gene95095:CDS 45.0%
GCTTGGTTGTCAAACTCTCA+AGG + chr8.2:705923-705942 None:intergenic 45.0%
GGCAAAAGCAGCAGAACAAA+AGG - chr8.2:706919-706938 MS.gene95095:intron 45.0%
GGTTGGAGAGATTGACACAA+GGG - chr8.2:705300-705319 MS.gene95095:CDS 45.0%
GTAGAAGACATTGGCATCCA+CGG + chr8.2:706729-706748 None:intergenic 45.0%
GTGCTCTATCGATGCTTTCA+TGG + chr8.2:706267-706286 None:intergenic 45.0%
TGAGGAAACAAAGGCTGCAA+TGG - chr8.2:707171-707190 MS.gene95095:intron 45.0%
TGGTGAAGTAGCAGTTCCTA+AGG - chr8.2:705360-705379 MS.gene95095:CDS 45.0%
TGTCAAGAGAAGATCGTCAG+AGG - chr8.2:705393-705412 MS.gene95095:CDS 45.0%
TTGACAGCGAATCTGTCCTT+AGG + chr8.2:705379-705398 None:intergenic 45.0%
! AGAAAGGTGGATTCTCCAAG+GGG - chr8.2:705274-705293 MS.gene95095:CDS 45.0%
! ATTGAAAAAGAGCGCGGAAG+AGG - chr8.2:706685-706704 MS.gene95095:CDS 45.0%
! GAGAAAGGTGGATTCTCCAA+GGG - chr8.2:705273-705292 MS.gene95095:CDS 45.0%
! GCAGCTTTGACAGATTGGAA+TGG + chr8.2:705328-705347 None:intergenic 45.0%
! TGAGAAAGGTGGATTCTCCA+AGG - chr8.2:705272-705291 MS.gene95095:CDS 45.0%
!! CGCTTTGATTGCTGATTCCT+TGG + chr8.2:705964-705983 None:intergenic 45.0%
ACAAAAGGCCCTCTCGTCAT+GGG - chr8.2:705651-705670 MS.gene95095:CDS 50.0%
AGAAGCCACAAAGACACTGC+AGG - chr8.2:706523-706542 MS.gene95095:CDS 50.0%
AGAGATGAGCAGAAAGGCTC+AGG - chr8.2:706811-706830 MS.gene95095:intron 50.0%
CAAACTCTCAAGGGTCTCCT+TGG + chr8.2:705913-705932 None:intergenic 50.0%
CGAGAGTCTACTTTGCACGT+CGG + chr8.2:706969-706988 None:intergenic 50.0%
CTGTCTCCGATTGTAGCTTC+TGG + chr8.2:706769-706788 None:intergenic 50.0%
GCTATCATGGCTGAGTTGCA+AGG - chr8.2:707091-707110 MS.gene95095:intron 50.0%
GGCTGAAGCTGTGAGGAATA+AGG - chr8.2:705983-706002 MS.gene95095:CDS 50.0%
TACAAAAGGCCCTCTCGTCA+TGG - chr8.2:705650-705669 MS.gene95095:CDS 50.0%
TTCTGACCTTGAGAAGGCCA+AGG - chr8.2:705893-705912 MS.gene95095:CDS 50.0%
! GGCTTTGTGGTATGCAGAGA+TGG - chr8.2:707198-707217 MS.gene95095:CDS 50.0%
AAGGATCGGTGAGCTCTCAG+AGG - chr8.2:706232-706251 MS.gene95095:CDS 55.0%
ACATTGGCATCCACGGTACC+TGG + chr8.2:706722-706741 None:intergenic 55.0%
ATCTCTCCAACCTCTCCCCT+TGG + chr8.2:705292-705311 None:intergenic 55.0%
CTAGCAGCATTGCAGGCAAC+AGG - chr8.2:706176-706195 MS.gene95095:CDS 55.0%
CTGCAATGGAGACGGCTTTG+TGG - chr8.2:707185-707204 MS.gene95095:intron 55.0%
GATTCTCCAAGGGGAGAGGT+TGG - chr8.2:705283-705302 MS.gene95095:CDS 55.0%
GGCAAAGCTAGCAGCATTGC+AGG - chr8.2:706169-706188 MS.gene95095:CDS 55.0%
TCAAAGCGGCTGAAGCTGTG+AGG - chr8.2:705976-705995 MS.gene95095:CDS 55.0%
! AAAAAGAGCGCGGAAGAGGC+GGG - chr8.2:706689-706708 MS.gene95095:CDS 55.0%
! GAAAAAGAGCGCGGAAGAGG+CGG - chr8.2:706688-706707 MS.gene95095:CDS 55.0%
CTGCTTCTTCAGCCGCTGCT+CGG + chr8.2:706862-706881 None:intergenic 60.0%
TGCTTCTTCAGCCGCTGCTC+GGG + chr8.2:706861-706880 None:intergenic 60.0%
! AAAAGAGCGCGGAAGAGGCG+GGG - chr8.2:706690-706709 MS.gene95095:CDS 60.0%
! AGCTGAAGCATCCCGAGCAG+CGG - chr8.2:706847-706866 MS.gene95095:intron 60.0%
! GGGTCTCCTTGGCCTTCTCA+AGG + chr8.2:705902-705921 None:intergenic 60.0%
! GGTGGATTCTCCAAGGGGAG+AGG - chr8.2:705279-705298 MS.gene95095:CDS 60.0%
GCATCCACGGTACCTGGCTG+AGG + chr8.2:706716-706735 None:intergenic 65.0%
GAAGAGGCGGGGCCTCAGCC+AGG - chr8.2:706701-706720 MS.gene95095:CDS 75.0%
! GGGGCCTCAGCCAGGTACCG+TGG - chr8.2:706709-706728 MS.gene95095:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 705271 707333 705271 ID=MS.gene95095
chr8.2 mRNA 705271 707333 705271 ID=MS.gene95095.t1;Parent=MS.gene95095
chr8.2 exon 707190 707333 707190 ID=MS.gene95095.t1.exon1;Parent=MS.gene95095.t1
chr8.2 CDS 707190 707333 707190 ID=cds.MS.gene95095.t1;Parent=MS.gene95095.t1
chr8.2 exon 705271 706812 705271 ID=MS.gene95095.t1.exon2;Parent=MS.gene95095.t1
chr8.2 CDS 705271 706812 705271 ID=cds.MS.gene95095.t1;Parent=MS.gene95095.t1
Gene Sequence

>MS.gene95095

ATGAGAAAGGTGGATTCTCCAAGGGGAGAGGTTGGAGAGATTGACACAAGGGTACCATTCCAATCTGTCAAAGCTGCTGTTAGTTTATTTGGTGAAGTAGCAGTTCCTAAGGACAGATTCGCTGTCAAGAGAAGATCGTCAGAGGTATATACATCAAGTATAATAATTTATACCATATTGGATTTTTTTTGTACATATTGTTTCATAGGAAATGATTTTGTAATTTTCAACATTATGATATATATCACATTGAATATTCATCAAAACATTTTAATCCTAGACATTTTAAATGTTGGAAAGAAAGATATTAAAGTCAAAAAAATTTGATATCCAAAGTTTCACACAATACCTGATGTTAGGCAATTTGACACACAAACAATACAAAAGGCCCTCTCGTCATGGGAAAAACTTTTTATTATTTTATGTCTATAGCATTGCATGAGACACACATTTTGAGAATGATTTCATTTTTCATGTTAGTTACACCTAAACAAGTTTCACACTTCTTTGGTGATCTGCAGAATGTATTTGAAAAGGAGACACAGCTTATCCTGGCCCAAAAAGAATTATGTAAGTTAAAGAAACACGTAGCTAGTGCTGAGACCACGAAAGTTAAAGCACTTTCTGACCTTGAGAAGGCCAAGGAGACCCTTGAGAGTTTGACAACCAAGCTGAACAATGTGAGAGAATCCAAGGAATCAGCAATCAAAGCGGCTGAAGCTGTGAGGAATAAGGGCAAACCATTTGAAAAGACCCTATCCCTAAAAGTTATAGGATATGAAGCTTGGAAACAAGAACTAGAAAATGCAAGAAACGAGTACACGACTAAGGTAGCCGAACTAGATTCTTCCAAGCAAGAACTCACGAAAATCAGGCAGGATTTTGATGCAGTTTTGGAGGCAAAGCTAGCAGCATTGCAGGCAACAGGAGAAGCTCAGCGTTCTGCAAAATTTAACTCAGAAAGGATCGGTGAGCTCTCAGAGGAAATTGCAACCATGAAAGCATCGATAGAGCACTTGAAGCTTGCCTCTGCACAAAATGAAACCCAATTCGACTTTTACAAAACTGCAAAAGAAGAAGCACAGAAAAAACTGGAGGCCTTAAAGAATGAATATGATGATCCAGAACTAATCCAAAATCTAGACGCGAAACTTGCCGAAACAAGTGCAGAGATTGAGGTTCTTCAAGAGCAGATGAAAAAGCTTCATGCTTCCAAGATGGATTCTGTGAAACTTCTAACTTCAGAACTTAAAGAAGCCACAAAGACACTGCAGGATGTTGCTGCAGAAGAAATCTCCCTTAAGAAGCTAGTATTTTCTCTTAGGACAGAATTGAAACAAGTGAAGAAAGAGCAAGATGAGCTGAAGGAGAAGAAACAAGCAGCAGAAGATCTTGCTTCTAACCTCACTGGTGAATTGAAAAAGAGCGCGGAAGAGGCGGGGCCTCAGCCAGGTACCGTGGATGCCAATGTCTTCTACATGCAAAGTTGTAAAATCCAGAAGCTACAATCGGAGACAGAAGATGCAAGAAGAGAAGCCAAAGAGATGAGCAGAAAGGCTCAGGAACTGAAGCAAGAAGCTGAAGCATCCCGAGCAGCGGCTGAAGAAGCAGAGAAAAAGCTAGAACTTGTTTTGGAAGAGGCTAAAGAGGCAAAAGCAGCAGAACAAAAGGCCATTAAAGAGATGAAGATTATCTCCGACGTGCAAAGTAGACTCTCGATTTCAAAATTTAGTGGTAAGATCAGGATGTCAAAAGAAGAGTTTGAGTCACTGAATGGAAAAGTGAAGGAATACCAAGAATTGGCAGAAAAGAAAGAGGCAGCTATCATGGCTGAGTTGCAAGGAATGTACACAAGGAAAAATGAATTGGACATAAAGGTGGAAGCTAACCTGAAAGCTGTTGAGGAAACAAAGGCTGCAATGGAGACGGCTTTGTGGTATGCAGAGATGGCAAATTCTGCAAAAGCGGCAATTGAACGTGAATTAAGGAGATGTCGTCAACCTGATAGTACATCTTCACCGATATCAGATTGTTCAGATAATTCTTCGATGTTGAGCATCTAG
Protein sequence

>MS.gene95095.t1

MRKVDSPRGEVGEIDTRVPFQSVKAAVSLFGEVAVPKDRFAVKRRSSENVFEKETQLILAQKELCKLKKHVASAETTKVKALSDLEKAKETLESLTTKLNNVRESKESAIKAAEAVRNKGKPFEKTLSLKVIGYEAWKQELENARNEYTTKVAELDSSKQELTKIRQDFDAVLEAKLAALQATGEAQRSAKFNSERIGELSEEIATMKASIEHLKLASAQNETQFDFYKTAKEEAQKKLEALKNEYDDPELIQNLDAKLAETSAEIEVLQEQMKKLHASKMDSVKLLTSELKEATKTLQDVAAEEISLKKLVFSLRTELKQVKKEQDELKEKKQAAEDLASNLTGELKKSAEEAGPQPGTVDANVFYMQSCKIQKLQSETEDARREAKEMSRKAQELKQEAEASRAAAEEAEKKLELVLEEAKEAKAAEQKAIKEMKIISDVQSRLSISKFSGKIRMSKEEFESLNGKVKEYQELAEKKEAAIMAELQGMYTRKNELDIKVEANLKAVEETKAAMETALWYAEMANSAKAAIERELRRCRQPDSTSSPISDCSDNSSMLSI