Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95145.t1 | XP_003610521.1 | 96.3 | 546 | 20 | 0 | 1 | 546 | 1 | 546 | 9.20E-262 | 912.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95145.t1 | Q14684 | 31.8 | 255 | 147 | 8 | 1 | 239 | 1 | 244 | 3.3e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95145.t1 | G7JKJ1 | 96.3 | 546 | 20 | 0 | 1 | 546 | 1 | 546 | 6.6e-262 | 912.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052717 | MS.gene95145 | 0.806891 | 6.60E-50 | -1.69E-46 |
| MS.gene053122 | MS.gene95145 | 0.828894 | 6.98E-55 | -1.69E-46 |
| MS.gene059900 | MS.gene95145 | -0.80332 | 3.69E-49 | -1.69E-46 |
| MS.gene059901 | MS.gene95145 | -0.827028 | 1.96E-54 | -1.69E-46 |
| MS.gene059935 | MS.gene95145 | 0.821889 | 3.18E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95145.t1 | MTR_4g133100 | 97.619 | 546 | 13 | 0 | 1 | 546 | 1 | 546 | 0.0 | 1071 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95145.t1 | AT5G20600 | 49.442 | 538 | 241 | 11 | 7 | 540 | 18 | 528 | 2.60e-159 | 465 |
Find 121 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTTCTCAAACTGCTTT+TGG | 0.155542 | 8.2:+1283169 | None:intergenic |
| GAATAAGAATTCGTGGGATT+TGG | 0.238732 | 8.2:-1283967 | MS.gene95145:CDS |
| GAGAAGGATGCTGTTAATTC+AGG | 0.240790 | 8.2:-1283504 | MS.gene95145:CDS |
| TTCTGCTCCTGATTGTGTTC+AGG | 0.242420 | 8.2:-1283574 | MS.gene95145:CDS |
| TGATGGTGATGTTGTGAATT+TGG | 0.255461 | 8.2:-1283646 | MS.gene95145:CDS |
| CTGTTTGAGTGCACTTCCTC+TGG | 0.264276 | 8.2:+1282870 | None:intergenic |
| TTCTGTTGACAAAGTGAAAA+AGG | 0.295604 | 8.2:-1283346 | MS.gene95145:CDS |
| TTCCCTAACAAAACCTTATC+AGG | 0.309806 | 8.2:+1283753 | None:intergenic |
| ATAAATTCTATCTTCTTATT+CGG | 0.322783 | 8.2:-1284019 | MS.gene95145:CDS |
| TCTAAAACACTCACCTTAAC+AGG | 0.323131 | 8.2:+1283816 | None:intergenic |
| AGAAACATCCCCGGCAGCTT+TGG | 0.340486 | 8.2:+1283098 | None:intergenic |
| TGCTTCCAAGTTGTTTGAGT+TGG | 0.341408 | 8.2:-1283598 | MS.gene95145:CDS |
| AAGAATGATGCCAATGAAAA+TGG | 0.357703 | 8.2:-1283243 | MS.gene95145:CDS |
| TCAACAATGGGAACCAAATC+TGG | 0.360558 | 8.2:+1283432 | None:intergenic |
| CAGAGGAAGTGCACTCAAAC+AGG | 0.360720 | 8.2:-1282869 | MS.gene95145:CDS |
| GGTTGCTGCGGAAGCAGGTT+TGG | 0.366574 | 8.2:-1283151 | MS.gene95145:CDS |
| CTATTCCCCTGAACACAATC+AGG | 0.369072 | 8.2:+1283567 | None:intergenic |
| TTCGAGTGATAAGTTGTTGC+AGG | 0.370155 | 8.2:-1283898 | MS.gene95145:CDS |
| GAAACATCCCCGGCAGCTTT+GGG | 0.374968 | 8.2:+1283099 | None:intergenic |
| TGGAGAGGCATCTCTCTGAT+TGG | 0.378842 | 8.2:+1282832 | None:intergenic |
| GCTTCCAAGTTGTTTGAGTT+GGG | 0.382704 | 8.2:-1283597 | MS.gene95145:CDS |
| GAAGAAATTAAGATCTCTTT+CGG | 0.384532 | 8.2:-1282737 | MS.gene95145:CDS |
| AGATGAATTCTGCTGAGAAC+GGG | 0.385045 | 8.2:-1283269 | MS.gene95145:CDS |
| GCGGGTAGAAGGACAATAAT+TGG | 0.391294 | 8.2:-1282784 | MS.gene95145:CDS |
| TGATGAGGAAGTGCCAGATT+TGG | 0.392532 | 8.2:-1283445 | MS.gene95145:CDS |
| CGATTCCTGATTCTGTTGAT+CGG | 0.397418 | 8.2:-1283470 | MS.gene95145:CDS |
| TCATCCCGATCAACAGAATC+AGG | 0.404632 | 8.2:+1283465 | None:intergenic |
| GGAACGATTGCGTTGGGGAT+GGG | 0.405554 | 8.2:-1283624 | MS.gene95145:CDS |
| AAGAAGAGTGGTGGGGATGA+AGG | 0.406491 | 8.2:-1283672 | MS.gene95145:CDS |
| GGGAACGATTGCGTTGGGGA+TGG | 0.411914 | 8.2:-1283625 | MS.gene95145:CDS |
| GATGGTGATGTTGTGAATTT+GGG | 0.412750 | 8.2:-1283645 | MS.gene95145:CDS |
| GGCATCTCTCTGATTGGACC+TGG | 0.413742 | 8.2:+1282838 | None:intergenic |
| GATGCCTCTCCAAAACAAAA+AGG | 0.414704 | 8.2:-1282821 | MS.gene95145:CDS |
| TAAAGTGATTGTGAATTGTT+TGG | 0.417412 | 8.2:-1283937 | MS.gene95145:CDS |
| TCTGCTCCTGATTGTGTTCA+GGG | 0.418605 | 8.2:-1283573 | MS.gene95145:CDS |
| TTGGCATCTTCTTCAGGAAG+TGG | 0.441094 | 8.2:+1284227 | None:intergenic |
| GAGAAGGTTGCTGCGGAAGC+AGG | 0.443225 | 8.2:-1283156 | MS.gene95145:CDS |
| GATTCCTGATTCTGTTGATC+GGG | 0.443920 | 8.2:-1283469 | MS.gene95145:CDS |
| AACTGAAGAAGGCGGGTAGA+AGG | 0.445914 | 8.2:-1282795 | MS.gene95145:CDS |
| CGCTTATGAATAAGAATTCG+TGG | 0.449006 | 8.2:-1283974 | MS.gene95145:CDS |
| CTCAAGCTCTGAGGAGGTAA+AGG | 0.457744 | 8.2:+1282913 | None:intergenic |
| AATCAGTGAACGGCCAGCTT+CGG | 0.458294 | 8.2:+1284334 | None:intergenic |
| AGAAGGATGCTGTTAATTCA+GGG | 0.458665 | 8.2:-1283503 | MS.gene95145:CDS |
| TCAAACTCGTCTTAAAATCA+TGG | 0.461781 | 8.2:-1284268 | MS.gene95145:CDS |
| GGTGGGGATGAAGGTGGTGA+TGG | 0.462518 | 8.2:-1283663 | MS.gene95145:CDS |
| GACTGTGTGGCTTCCATACC+AGG | 0.463504 | 8.2:+1282935 | None:intergenic |
| TGTTTGAGTGCACTTCCTCT+GGG | 0.473485 | 8.2:+1282871 | None:intergenic |
| GCGACAAACGCATCCGAAGC+TGG | 0.474678 | 8.2:-1284347 | MS.gene95145:CDS |
| GATAAGTTGTTGCAGGGAAA+AGG | 0.474867 | 8.2:-1283891 | MS.gene95145:CDS |
| TGTTAATTATCATGTTGCTT+CGG | 0.480010 | 8.2:-1283868 | MS.gene95145:CDS |
| TTGTTAGGGAAGATTAAGAT+TGG | 0.486842 | 8.2:-1283741 | MS.gene95145:CDS |
| AATTTGGGAACGATTGCGTT+GGG | 0.487276 | 8.2:-1283630 | MS.gene95145:CDS |
| TCCTCACTATGCGTCGCGAA+TGG | 0.487903 | 8.2:-1284067 | MS.gene95145:CDS |
| TTTGATGTGCTGTTGAAGAA+TGG | 0.488512 | 8.2:-1283714 | MS.gene95145:CDS |
| CTCACCTTAACAGGAAGAAA+AGG | 0.488943 | 8.2:+1283825 | None:intergenic |
| AAGAGAACTAAGAATTCTAA+AGG | 0.489638 | 8.2:-1283066 | MS.gene95145:CDS |
| GTGCTACACCCAAAGCTGCC+GGG | 0.499237 | 8.2:-1283107 | MS.gene95145:CDS |
| TCAGCATCAACCTCAACAAT+GGG | 0.503809 | 8.2:+1283420 | None:intergenic |
| TGTGCTACACCCAAAGCTGC+CGG | 0.508668 | 8.2:-1283108 | MS.gene95145:CDS |
| GCATCTCTCTGATTGGACCT+GGG | 0.513171 | 8.2:+1282839 | None:intergenic |
| AAATGCAAGAAGGAGAAGAA+AGG | 0.526369 | 8.2:-1283369 | MS.gene95145:CDS |
| TTCTTCATGCGCTTGACAGA+TGG | 0.526672 | 8.2:+1282754 | None:intergenic |
| GAAGAATGGGAAGAAGTTGT+TGG | 0.527818 | 8.2:-1283700 | MS.gene95145:CDS |
| CATCTCTCTGATTGGACCTG+GGG | 0.530708 | 8.2:+1282840 | None:intergenic |
| GAGATGAATTCTGCTGAGAA+CGG | 0.533402 | 8.2:-1283270 | MS.gene95145:CDS |
| TTCTAAAGGAAAGACATCTC+AGG | 0.538949 | 8.2:-1283052 | MS.gene95145:CDS |
| ATCAGCATCAACCTCAACAA+TGG | 0.543387 | 8.2:+1283419 | None:intergenic |
| GGTCCGGTATCGATGCTTTG+AGG | 0.546353 | 8.2:-1284046 | MS.gene95145:CDS |
| GCGGAAGCAGGTTTGGAAGA+CGG | 0.548014 | 8.2:-1283144 | MS.gene95145:CDS |
| TGGAGGTGAAGAAGAGTGGT+GGG | 0.551897 | 8.2:-1283680 | MS.gene95145:CDS |
| GATGGGGAAATTGCCTGATA+AGG | 0.554479 | 8.2:-1283766 | MS.gene95145:CDS |
| TTGATGTGCTGTTGAAGAAT+GGG | 0.555591 | 8.2:-1283713 | MS.gene95145:CDS |
| AGATTTGGTTCCCATTGTTG+AGG | 0.558856 | 8.2:-1283430 | MS.gene95145:CDS |
| TGGGGATAAAAGCTCAAAGA+AGG | 0.560037 | 8.2:-1282980 | MS.gene95145:CDS |
| ACTATGCGTCGCGAATGGTC+CGG | 0.562666 | 8.2:-1284062 | MS.gene95145:CDS |
| GCTTATGAATAAGAATTCGT+GGG | 0.567848 | 8.2:-1283973 | MS.gene95145:CDS |
| TAACCTCAAAGCATCGATAC+CGG | 0.568245 | 8.2:+1284043 | None:intergenic |
| GAGGTTCGAAATCACACTCT+CGG | 0.570687 | 8.2:+1283191 | None:intergenic |
| TTGGAGGTGAAGAAGAGTGG+TGG | 0.574718 | 8.2:-1283681 | MS.gene95145:CDS |
| GATGCTGATGTTGTTCAGAA+TGG | 0.576099 | 8.2:-1283405 | MS.gene95145:CDS |
| CTGCTCCTGATTGTGTTCAG+GGG | 0.582194 | 8.2:-1283572 | MS.gene95145:CDS |
| GACTCTGCAGTAGCAAAGAG+TGG | 0.582592 | 8.2:-1283000 | MS.gene95145:CDS |
| TGGAAATTCAATTGATGAGG+TGG | 0.584323 | 8.2:-1283220 | MS.gene95145:CDS |
| ACTCTGCAGTAGCAAAGAGT+GGG | 0.585415 | 8.2:-1282999 | MS.gene95145:CDS |
| TGCTACACCCAAAGCTGCCG+GGG | 0.586441 | 8.2:-1283106 | MS.gene95145:CDS |
| CCTCCAAAAGCAGTTTGAGA+AGG | 0.589423 | 8.2:-1283172 | MS.gene95145:CDS |
| AAGAGTGGTGGGGATGAAGG+TGG | 0.589968 | 8.2:-1283669 | MS.gene95145:CDS |
| TTGTTGGAGGTGAAGAAGAG+TGG | 0.590934 | 8.2:-1283684 | MS.gene95145:CDS |
| AGAACCCAACTCAAACAACT+TGG | 0.591735 | 8.2:+1283593 | None:intergenic |
| CGAGTTGTTTAATCAGTGAA+CGG | 0.592355 | 8.2:+1284324 | None:intergenic |
| AAATACTGAACGGTGAATGA+AGG | 0.593424 | 8.2:+1284101 | None:intergenic |
| TCGAGTGATAAGTTGTTGCA+GGG | 0.594628 | 8.2:-1283897 | MS.gene95145:CDS |
| ATCTCTCTGATTGGACCTGG+GGG | 0.597893 | 8.2:+1282841 | None:intergenic |
| CTTCCTCTGGGTGTAACAGA+GGG | 0.600725 | 8.2:+1282883 | None:intergenic |
| AAGGCGAAACTGAAGAAGGC+GGG | 0.603500 | 8.2:-1282802 | MS.gene95145:CDS |
| TCTCTTCTTAGAAACATCCC+CGG | 0.606700 | 8.2:+1283089 | None:intergenic |
| ACCATTCGCGACGCATAGTG+AGG | 0.607179 | 8.2:+1284066 | None:intergenic |
| GAATTTGGGAACGATTGCGT+TGG | 0.613825 | 8.2:-1283631 | MS.gene95145:CDS |
| TTCTGTTGATCGGGATGATG+AGG | 0.614662 | 8.2:-1283460 | MS.gene95145:CDS |
| ATGAGGTCAGCTTGAACGAG+AGG | 0.617288 | 8.2:+1284158 | None:intergenic |
| CCTCTGGGTGTAACAGAGGG+AGG | 0.624057 | 8.2:+1282886 | None:intergenic |
| GTTGCTGAAGAAATGCAAGA+AGG | 0.626289 | 8.2:-1283379 | MS.gene95145:CDS |
| GGAATTCTCAAGCTCTGAGG+AGG | 0.632414 | 8.2:+1282907 | None:intergenic |
| GAAAGTTGAGAAATACTGAA+CGG | 0.634784 | 8.2:+1284091 | None:intergenic |
| ACTTCCTCTGGGTGTAACAG+AGG | 0.636601 | 8.2:+1282882 | None:intergenic |
| GGAGGTGAAGAAGAGTGGTG+GGG | 0.644571 | 8.2:-1283679 | MS.gene95145:CDS |
| GCAGTTTGAGAAGGTTGCTG+CGG | 0.645976 | 8.2:-1283163 | MS.gene95145:CDS |
| AATGATGCCAATGAAAATGG+TGG | 0.646819 | 8.2:-1283240 | MS.gene95145:CDS |
| TGGTGGAAATTCAATTGATG+AGG | 0.647153 | 8.2:-1283223 | MS.gene95145:CDS |
| AAAGGCGAAACTGAAGAAGG+CGG | 0.655137 | 8.2:-1282803 | MS.gene95145:CDS |
| GATGAATTCTGCTGAGAACG+GGG | 0.656358 | 8.2:-1283268 | MS.gene95145:CDS |
| GAATGGGAAGAAGTTGTTGG+AGG | 0.659546 | 8.2:-1283697 | MS.gene95145:CDS |
| GGAAGTGGTTGAGATCGAGA+AGG | 0.660667 | 8.2:+1284242 | None:intergenic |
| CCTCCCTCTGTTACACCCAG+AGG | 0.663891 | 8.2:-1282886 | MS.gene95145:CDS |
| GGAGGAATTCTCAAGCTCTG+AGG | 0.666968 | 8.2:+1282904 | None:intergenic |
| ATTTGGGAACGATTGCGTTG+GGG | 0.669945 | 8.2:-1283629 | MS.gene95145:CDS |
| GTTCTCAGCAGAATTCATCT+CGG | 0.671398 | 8.2:+1283272 | None:intergenic |
| AGAGGAAGTGCACTCAAACA+GGG | 0.678015 | 8.2:-1282868 | MS.gene95145:CDS |
| CTCTGCAGTAGCAAAGAGTG+GGG | 0.679707 | 8.2:-1282998 | MS.gene95145:CDS |
| GCGAAGCGAGACGATCGATG+AGG | 0.701289 | 8.2:+1284141 | None:intergenic |
| TGAGGAGGTAAAGGACTGTG+TGG | 0.701475 | 8.2:+1282922 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTCTATCTTCTTATT+CGG | - | chr8.2:1283063-1283082 | MS.gene95145:CDS | 15.0% |
| ! | AAGAGAACTAAGAATTCTAA+AGG | - | chr8.2:1284016-1284035 | MS.gene95145:CDS | 25.0% |
| ! | GAAGAAATTAAGATCTCTTT+CGG | - | chr8.2:1284345-1284364 | MS.gene95145:CDS | 25.0% |
| ! | TAAAGTGATTGTGAATTGTT+TGG | - | chr8.2:1283145-1283164 | MS.gene95145:CDS | 25.0% |
| !! | ATTTTCCATGAAAAATAACC+TGG | - | chr8.2:1284129-1284148 | MS.gene95145:CDS | 25.0% |
| !! | TGTTAATTATCATGTTGCTT+CGG | - | chr8.2:1283214-1283233 | MS.gene95145:CDS | 25.0% |
| AAGAATGATGCCAATGAAAA+TGG | - | chr8.2:1283839-1283858 | MS.gene95145:CDS | 30.0% | |
| ATTCATAAGCGAAAAACTCT+TGG | + | chr8.2:1283099-1283118 | None:intergenic | 30.0% | |
| GAAAGTTGAGAAATACTGAA+CGG | + | chr8.2:1282994-1283013 | None:intergenic | 30.0% | |
| GCTTATGAATAAGAATTCGT+GGG | - | chr8.2:1283109-1283128 | MS.gene95145:CDS | 30.0% | |
| TCAAACTCGTCTTAAAATCA+TGG | - | chr8.2:1282814-1282833 | MS.gene95145:CDS | 30.0% | |
| TTCTGTTGACAAAGTGAAAA+AGG | - | chr8.2:1283736-1283755 | MS.gene95145:CDS | 30.0% | |
| TTGTTAGGGAAGATTAAGAT+TGG | - | chr8.2:1283341-1283360 | MS.gene95145:CDS | 30.0% | |
| ! | TGAATTTCCACCATTTTCAT+TGG | + | chr8.2:1283852-1283871 | None:intergenic | 30.0% |
| !!! | TCTCAGGATTTTGATTTGAA+TGG | - | chr8.2:1284046-1284065 | MS.gene95145:CDS | 30.0% |
| AAATACTGAACGGTGAATGA+AGG | + | chr8.2:1282984-1283003 | None:intergenic | 35.0% | |
| AAATGCAAGAAGGAGAAGAA+AGG | - | chr8.2:1283713-1283732 | MS.gene95145:CDS | 35.0% | |
| AATGATGCCAATGAAAATGG+TGG | - | chr8.2:1283842-1283861 | MS.gene95145:CDS | 35.0% | |
| AGAAGGATGCTGTTAATTCA+GGG | - | chr8.2:1283579-1283598 | MS.gene95145:CDS | 35.0% | |
| CCATGAAAAATAACCTGGTA+TGG | - | chr8.2:1284134-1284153 | MS.gene95145:CDS | 35.0% | |
| CGAGTTGTTTAATCAGTGAA+CGG | + | chr8.2:1282761-1282780 | None:intergenic | 35.0% | |
| CGCTTATGAATAAGAATTCG+TGG | - | chr8.2:1283108-1283127 | MS.gene95145:CDS | 35.0% | |
| GAATAAGAATTCGTGGGATT+TGG | - | chr8.2:1283115-1283134 | MS.gene95145:CDS | 35.0% | |
| TGGAAATTCAATTGATGAGG+TGG | - | chr8.2:1283862-1283881 | MS.gene95145:CDS | 35.0% | |
| TGGTGGAAATTCAATTGATG+AGG | - | chr8.2:1283859-1283878 | MS.gene95145:CDS | 35.0% | |
| TTCCCCATCACAGTAAAAAA+GGG | + | chr8.2:1283305-1283324 | None:intergenic | 35.0% | |
| TTCCCTAACAAAACCTTATC+AGG | + | chr8.2:1283332-1283351 | None:intergenic | 35.0% | |
| TTTCCCCATCACAGTAAAAA+AGG | + | chr8.2:1283306-1283325 | None:intergenic | 35.0% | |
| ! | AACACCTTTTCTTCCTGTTA+AGG | - | chr8.2:1283253-1283272 | MS.gene95145:CDS | 35.0% |
| ! | AAGGTCTTTTCTACTGTGTT+TGG | - | chr8.2:1282889-1282908 | MS.gene95145:CDS | 35.0% |
| ! | GATGGTGATGTTGTGAATTT+GGG | - | chr8.2:1283437-1283456 | MS.gene95145:CDS | 35.0% |
| ! | TCTAAAACACTCACCTTAAC+AGG | + | chr8.2:1283269-1283288 | None:intergenic | 35.0% |
| ! | TGATGGTGATGTTGTGAATT+TGG | - | chr8.2:1283436-1283455 | MS.gene95145:CDS | 35.0% |
| ! | TTCTAAAGGAAAGACATCTC+AGG | - | chr8.2:1284030-1284049 | MS.gene95145:CDS | 35.0% |
| ! | TTGATGTGCTGTTGAAGAAT+GGG | - | chr8.2:1283369-1283388 | MS.gene95145:CDS | 35.0% |
| ! | TTTGATGTGCTGTTGAAGAA+TGG | - | chr8.2:1283368-1283387 | MS.gene95145:CDS | 35.0% |
| !! | TCAGTTTCGCCTTTTTGTTT+TGG | + | chr8.2:1284273-1284292 | None:intergenic | 35.0% |
| !!! | AAGCCCTTTTTTACTGTGAT+GGG | - | chr8.2:1283299-1283318 | MS.gene95145:CDS | 35.0% |
| !!! | CAGGATTTTGATTTGAATGG+TGG | - | chr8.2:1284049-1284068 | MS.gene95145:CDS | 35.0% |
| !!! | CCATACCAGGTTATTTTTCA+TGG | + | chr8.2:1284137-1284156 | None:intergenic | 35.0% |
| !!! | TAAGCCCTTTTTTACTGTGA+TGG | - | chr8.2:1283298-1283317 | MS.gene95145:CDS | 35.0% |
| !!! | TGCCTGATAAGGTTTTGTTA+GGG | - | chr8.2:1283327-1283346 | MS.gene95145:CDS | 35.0% |
| !!! | TTGCCTGATAAGGTTTTGTT+AGG | - | chr8.2:1283326-1283345 | MS.gene95145:CDS | 35.0% |
| AAGAAGATGCCAAAAAGCTC+TGG | - | chr8.2:1282865-1282884 | MS.gene95145:CDS | 40.0% | |
| AATTTGGGAACGATTGCGTT+GGG | - | chr8.2:1283452-1283471 | MS.gene95145:CDS | 40.0% | |
| AGAACCCAACTCAAACAACT+TGG | + | chr8.2:1283492-1283511 | None:intergenic | 40.0% | |
| AGATGAATTCTGCTGAGAAC+GGG | - | chr8.2:1283813-1283832 | MS.gene95145:CDS | 40.0% | |
| ATCAGCATCAACCTCAACAA+TGG | + | chr8.2:1283666-1283685 | None:intergenic | 40.0% | |
| CAAAAAGGCGAAACTGAAGA+AGG | - | chr8.2:1284276-1284295 | MS.gene95145:CDS | 40.0% | |
| CGATTCCTGATTCTGTTGAT+CGG | - | chr8.2:1283612-1283631 | MS.gene95145:CDS | 40.0% | |
| CTCACCTTAACAGGAAGAAA+AGG | + | chr8.2:1283260-1283279 | None:intergenic | 40.0% | |
| GAAGAATGGGAAGAAGTTGT+TGG | - | chr8.2:1283382-1283401 | MS.gene95145:CDS | 40.0% | |
| GAGAAGGATGCTGTTAATTC+AGG | - | chr8.2:1283578-1283597 | MS.gene95145:CDS | 40.0% | |
| GAGATGAATTCTGCTGAGAA+CGG | - | chr8.2:1283812-1283831 | MS.gene95145:CDS | 40.0% | |
| GATAAGTTGTTGCAGGGAAA+AGG | - | chr8.2:1283191-1283210 | MS.gene95145:CDS | 40.0% | |
| GATGCCTCTCCAAAACAAAA+AGG | - | chr8.2:1284261-1284280 | MS.gene95145:CDS | 40.0% | |
| GATGCTGATGTTGTTCAGAA+TGG | - | chr8.2:1283677-1283696 | MS.gene95145:CDS | 40.0% | |
| GATTCCTGATTCTGTTGATC+GGG | - | chr8.2:1283613-1283632 | MS.gene95145:CDS | 40.0% | |
| GTTCTCAGCAGAATTCATCT+CGG | + | chr8.2:1283813-1283832 | None:intergenic | 40.0% | |
| GTTGCTGAAGAAATGCAAGA+AGG | - | chr8.2:1283703-1283722 | MS.gene95145:CDS | 40.0% | |
| TCAACAATGGGAACCAAATC+TGG | + | chr8.2:1283653-1283672 | None:intergenic | 40.0% | |
| TCAGCATCAACCTCAACAAT+GGG | + | chr8.2:1283665-1283684 | None:intergenic | 40.0% | |
| TCGAGTGATAAGTTGTTGCA+GGG | - | chr8.2:1283185-1283204 | MS.gene95145:CDS | 40.0% | |
| TCTCTTCTTAGAAACATCCC+CGG | + | chr8.2:1283996-1284015 | None:intergenic | 40.0% | |
| TGCTTCCAAGTTGTTTGAGT+TGG | - | chr8.2:1283484-1283503 | MS.gene95145:CDS | 40.0% | |
| TGGGGATAAAAGCTCAAAGA+AGG | - | chr8.2:1284102-1284121 | MS.gene95145:CDS | 40.0% | |
| TTCGAGTGATAAGTTGTTGC+AGG | - | chr8.2:1283184-1283203 | MS.gene95145:CDS | 40.0% | |
| ! | AAGACCTTTCCAGAGCTTTT+TGG | + | chr8.2:1282877-1282896 | None:intergenic | 40.0% |
| ! | AGATTTGGTTCCCATTGTTG+AGG | - | chr8.2:1283652-1283671 | MS.gene95145:CDS | 40.0% |
| ! | CAACCTTCTCAAACTGCTTT+TGG | + | chr8.2:1283916-1283935 | None:intergenic | 40.0% |
| ! | GCTTCCAAGTTGTTTGAGTT+GGG | - | chr8.2:1283485-1283504 | MS.gene95145:CDS | 40.0% |
| ! | TGAGTTTTTGCAGCTAGAGA+AGG | - | chr8.2:1283562-1283581 | MS.gene95145:CDS | 40.0% |
| !! | AGCTTTTTGGCATCTTCTTC+AGG | + | chr8.2:1282864-1282883 | None:intergenic | 40.0% |
| !! | TAACCTCAAAGCATCGATAC+CGG | + | chr8.2:1283042-1283061 | None:intergenic | 40.0% |
| !!! | AGCCCTTTTTTACTGTGATG+GGG | - | chr8.2:1283300-1283319 | MS.gene95145:CDS | 40.0% |
| !!! | TTCGCCTTTTTGTTTTGGAG+AGG | + | chr8.2:1284268-1284287 | None:intergenic | 40.0% |
| AAAGGCGAAACTGAAGAAGG+CGG | - | chr8.2:1284279-1284298 | MS.gene95145:CDS | 45.0% | |
| ACTCTGCAGTAGCAAAGAGT+GGG | - | chr8.2:1284083-1284102 | MS.gene95145:CDS | 45.0% | |
| ATTTGGGAACGATTGCGTTG+GGG | - | chr8.2:1283453-1283472 | MS.gene95145:CDS | 45.0% | |
| CCTCCAAAAGCAGTTTGAGA+AGG | - | chr8.2:1283910-1283929 | MS.gene95145:CDS | 45.0% | |
| CTATTCCCCTGAACACAATC+AGG | + | chr8.2:1283518-1283537 | None:intergenic | 45.0% | |
| GAATGGGAAGAAGTTGTTGG+AGG | - | chr8.2:1283385-1283404 | MS.gene95145:CDS | 45.0% | |
| GAATTTGGGAACGATTGCGT+TGG | - | chr8.2:1283451-1283470 | MS.gene95145:CDS | 45.0% | |
| GAGGTTCGAAATCACACTCT+CGG | + | chr8.2:1283894-1283913 | None:intergenic | 45.0% | |
| GATGAATTCTGCTGAGAACG+GGG | - | chr8.2:1283814-1283833 | MS.gene95145:CDS | 45.0% | |
| GATGGGGAAATTGCCTGATA+AGG | - | chr8.2:1283316-1283335 | MS.gene95145:CDS | 45.0% | |
| GCGGGTAGAAGGACAATAAT+TGG | - | chr8.2:1284298-1284317 | MS.gene95145:CDS | 45.0% | |
| TCATCCCGATCAACAGAATC+AGG | + | chr8.2:1283620-1283639 | None:intergenic | 45.0% | |
| TCTGCTCCTGATTGTGTTCA+GGG | - | chr8.2:1283509-1283528 | MS.gene95145:CDS | 45.0% | |
| TGTTTGAGTGCACTTCCTCT+GGG | + | chr8.2:1284214-1284233 | None:intergenic | 45.0% | |
| TTCTGCTCCTGATTGTGTTC+AGG | - | chr8.2:1283508-1283527 | MS.gene95145:CDS | 45.0% | |
| TTCTGTTGATCGGGATGATG+AGG | - | chr8.2:1283622-1283641 | MS.gene95145:CDS | 45.0% | |
| TTCTTCATGCGCTTGACAGA+TGG | + | chr8.2:1284331-1284350 | None:intergenic | 45.0% | |
| TTGGCATCTTCTTCAGGAAG+TGG | + | chr8.2:1282858-1282877 | None:intergenic | 45.0% | |
| TTGTTGGAGGTGAAGAAGAG+TGG | - | chr8.2:1283398-1283417 | MS.gene95145:CDS | 45.0% | |
| ! | AGAGGAAGTGCACTCAAACA+GGG | - | chr8.2:1284214-1284233 | MS.gene95145:CDS | 45.0% |
| !! | CCTTCTCAAACTGCTTTTGG+AGG | + | chr8.2:1283913-1283932 | None:intergenic | 45.0% |
| !! | GATGCCAAAAAGCTCTGGAA+AGG | - | chr8.2:1282870-1282889 | MS.gene95145:CDS | 45.0% |
| !! | TGATGAGGAAGTGCCAGATT+TGG | - | chr8.2:1283637-1283656 | MS.gene95145:CDS | 45.0% |
| AACTGAAGAAGGCGGGTAGA+AGG | - | chr8.2:1284287-1284306 | MS.gene95145:CDS | 50.0% | |
| AAGGCGAAACTGAAGAAGGC+GGG | - | chr8.2:1284280-1284299 | MS.gene95145:CDS | 50.0% | |
| AATCAGTGAACGGCCAGCTT+CGG | + | chr8.2:1282751-1282770 | None:intergenic | 50.0% | |
| ACTTCCTCTGGGTGTAACAG+AGG | + | chr8.2:1284203-1284222 | None:intergenic | 50.0% | |
| ATCTCTCTGATTGGACCTGG+GGG | + | chr8.2:1284244-1284263 | None:intergenic | 50.0% | |
| ATGAGGTCAGCTTGAACGAG+AGG | + | chr8.2:1282927-1282946 | None:intergenic | 50.0% | |
| CATCTCTCTGATTGGACCTG+GGG | + | chr8.2:1284245-1284264 | None:intergenic | 50.0% | |
| CTCTGCAGTAGCAAAGAGTG+GGG | - | chr8.2:1284084-1284103 | MS.gene95145:CDS | 50.0% | |
| CTGCTCCTGATTGTGTTCAG+GGG | - | chr8.2:1283510-1283529 | MS.gene95145:CDS | 50.0% | |
| CTGTTTGAGTGCACTTCCTC+TGG | + | chr8.2:1284215-1284234 | None:intergenic | 50.0% | |
| CTTCCTCTGGGTGTAACAGA+GGG | + | chr8.2:1284202-1284221 | None:intergenic | 50.0% | |
| GACTCTGCAGTAGCAAAGAG+TGG | - | chr8.2:1284082-1284101 | MS.gene95145:CDS | 50.0% | |
| GCAGTTTGAGAAGGTTGCTG+CGG | - | chr8.2:1283919-1283938 | MS.gene95145:CDS | 50.0% | |
| GCATCTCTCTGATTGGACCT+GGG | + | chr8.2:1284246-1284265 | None:intergenic | 50.0% | |
| GGAAGTGGTTGAGATCGAGA+AGG | + | chr8.2:1282843-1282862 | None:intergenic | 50.0% | |
| GGAGGAATTCTCAAGCTCTG+AGG | + | chr8.2:1284181-1284200 | None:intergenic | 50.0% | |
| TGAGGAGGTAAAGGACTGTG+TGG | + | chr8.2:1284163-1284182 | None:intergenic | 50.0% | |
| TGGAGGTGAAGAAGAGTGGT+GGG | - | chr8.2:1283402-1283421 | MS.gene95145:CDS | 50.0% | |
| TTGGAGGTGAAGAAGAGTGG+TGG | - | chr8.2:1283401-1283420 | MS.gene95145:CDS | 50.0% | |
| ! | AAGAAGAGTGGTGGGGATGA+AGG | - | chr8.2:1283410-1283429 | MS.gene95145:CDS | 50.0% |
| ! | CAGAGGAAGTGCACTCAAAC+AGG | - | chr8.2:1284213-1284232 | MS.gene95145:CDS | 50.0% |
| !! | CTCAAGCTCTGAGGAGGTAA+AGG | + | chr8.2:1284172-1284191 | None:intergenic | 50.0% |
| !! | GGAATTCTCAAGCTCTGAGG+AGG | + | chr8.2:1284178-1284197 | None:intergenic | 50.0% |
| !! | TGGAGAGGCATCTCTCTGAT+TGG | + | chr8.2:1284253-1284272 | None:intergenic | 50.0% |
| ACCATTCGCGACGCATAGTG+AGG | + | chr8.2:1283019-1283038 | None:intergenic | 55.0% | |
| ACTATGCGTCGCGAATGGTC+CGG | - | chr8.2:1283020-1283039 | MS.gene95145:CDS | 55.0% | |
| AGAAACATCCCCGGCAGCTT+TGG | + | chr8.2:1283987-1284006 | None:intergenic | 55.0% | |
| GAAACATCCCCGGCAGCTTT+GGG | + | chr8.2:1283986-1284005 | None:intergenic | 55.0% | |
| GACTGTGTGGCTTCCATACC+AGG | + | chr8.2:1284150-1284169 | None:intergenic | 55.0% | |
| GCGGAAGCAGGTTTGGAAGA+CGG | - | chr8.2:1283938-1283957 | MS.gene95145:CDS | 55.0% | |
| GGAACGATTGCGTTGGGGAT+GGG | - | chr8.2:1283458-1283477 | MS.gene95145:CDS | 55.0% | |
| GGAGGTGAAGAAGAGTGGTG+GGG | - | chr8.2:1283403-1283422 | MS.gene95145:CDS | 55.0% | |
| GGCATCTCTCTGATTGGACC+TGG | + | chr8.2:1284247-1284266 | None:intergenic | 55.0% | |
| TCCTCACTATGCGTCGCGAA+TGG | - | chr8.2:1283015-1283034 | MS.gene95145:CDS | 55.0% | |
| TGTGCTACACCCAAAGCTGC+CGG | - | chr8.2:1283974-1283993 | MS.gene95145:CDS | 55.0% | |
| ! | AAGAGTGGTGGGGATGAAGG+TGG | - | chr8.2:1283413-1283432 | MS.gene95145:CDS | 55.0% |
| !! | GGTCCGGTATCGATGCTTTG+AGG | - | chr8.2:1283036-1283055 | MS.gene95145:CDS | 55.0% |
| CCTCCCTCTGTTACACCCAG+AGG | - | chr8.2:1284196-1284215 | MS.gene95145:CDS | 60.0% | |
| CCTCTGGGTGTAACAGAGGG+AGG | + | chr8.2:1284199-1284218 | None:intergenic | 60.0% | |
| CTCAAACAGGGTGTACCCCC+AGG | - | chr8.2:1284226-1284245 | MS.gene95145:CDS | 60.0% | |
| GAGAAGGTTGCTGCGGAAGC+AGG | - | chr8.2:1283926-1283945 | MS.gene95145:CDS | 60.0% | |
| GCGAAGCGAGACGATCGATG+AGG | + | chr8.2:1282944-1282963 | None:intergenic | 60.0% | |
| GCGACAAACGCATCCGAAGC+TGG | - | chr8.2:1282735-1282754 | MS.gene95145:CDS | 60.0% | |
| GGGAACGATTGCGTTGGGGA+TGG | - | chr8.2:1283457-1283476 | MS.gene95145:CDS | 60.0% | |
| GGTGGGGATGAAGGTGGTGA+TGG | - | chr8.2:1283419-1283438 | MS.gene95145:CDS | 60.0% | |
| GGTTGCTGCGGAAGCAGGTT+TGG | - | chr8.2:1283931-1283950 | MS.gene95145:CDS | 60.0% | |
| GTGCTACACCCAAAGCTGCC+GGG | - | chr8.2:1283975-1283994 | MS.gene95145:CDS | 60.0% | |
| TGCTACACCCAAAGCTGCCG+GGG | - | chr8.2:1283976-1283995 | MS.gene95145:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 1282732 | 1284372 | 1282732 | ID=MS.gene95145 |
| chr8.2 | mRNA | 1282732 | 1284372 | 1282732 | ID=MS.gene95145.t1;Parent=MS.gene95145 |
| chr8.2 | exon | 1282732 | 1284372 | 1282732 | ID=MS.gene95145.t1.exon1;Parent=MS.gene95145.t1 |
| chr8.2 | CDS | 1282732 | 1284372 | 1282732 | ID=cds.MS.gene95145.t1;Parent=MS.gene95145.t1 |
| Gene Sequence |
| Protein sequence |
