Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95337.t1 | BBG98627.1 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 3.50E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95337.t1 | P10978 | 30.5 | 501 | 267 | 11 | 7 | 442 | 5 | 489 | 1.8e-52 | 208.4 |
| MS.gene95337.t1 | P10978 | 35.6 | 216 | 110 | 5 | 264 | 459 | 935 | 1141 | 1.0e-23 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95337.t1 | A0A4Y1R3K4 | 71.1 | 439 | 70 | 2 | 1 | 382 | 1 | 439 | 2.6e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050213 | MS.gene95337 | 0.812062 | 5.12E-51 | -1.69E-46 |
| MS.gene052735 | MS.gene95337 | 0.824316 | 8.62E-54 | -1.69E-46 |
| MS.gene052736 | MS.gene95337 | 0.828558 | 8.41E-55 | -1.69E-46 |
| MS.gene05615 | MS.gene95337 | 0.806321 | 8.70E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene95337 | 0.831673 | 1.46E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene95337 | 0.81959 | 1.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95337.t1 | MTR_2g039140 | 40.217 | 184 | 77 | 2 | 1 | 183 | 120 | 271 | 4.39e-32 | 124 |
| MS.gene95337.t1 | MTR_4g036430 | 89.744 | 39 | 4 | 0 | 1 | 39 | 31 | 69 | 1.19e-18 | 80.5 |
| MS.gene95337.t1 | MTR_1g027280 | 32.667 | 150 | 95 | 2 | 225 | 368 | 103 | 252 | 1.51e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95337.t1 | AT3G29785 | 57.778 | 90 | 37 | 1 | 11 | 100 | 7 | 95 | 5.30e-30 | 113 |
Find 108 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAATTGAACTTAAT+TGG | 0.076810 | 1.3:+18026328 | None:intergenic |
| AATTCTTGAAGAATTCTTTA+TGG | 0.165694 | 1.3:+18025818 | None:intergenic |
| CCGTCTGAGGTGATTGTTCT+TGG | 0.171668 | 1.3:+18024696 | None:intergenic |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 1.3:+18026588 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+TGG | 0.253882 | 1.3:+18025955 | None:intergenic |
| TGACGCATTGATATGTTCTT+TGG | 0.284379 | 1.3:-18025896 | MS.gene95337:CDS |
| CAACGACGTGCTAACCGTTT+TGG | 0.291938 | 1.3:+18024739 | None:intergenic |
| ATTCCATATGCTTCAGCAAT+TGG | 0.349893 | 1.3:-18024647 | MS.gene95337:CDS |
| ATTCTTGAAGAATTCTTTAT+GGG | 0.356648 | 1.3:+18025819 | None:intergenic |
| CTTCCAATTGCTGAAGCATA+TGG | 0.367733 | 1.3:+18024644 | None:intergenic |
| TCGCCTCTTGATTCTTTGCT+GGG | 0.374564 | 1.3:+18025956 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 1.3:-18026674 | MS.gene95337:CDS |
| AATCTCTTGTGCCATAGATT+AGG | 0.388549 | 1.3:+18025484 | None:intergenic |
| GATACCAATTGAACTTAATT+GGG | 0.389115 | 1.3:+18026329 | None:intergenic |
| CAAATGAAAATCCTAATCTA+TGG | 0.391111 | 1.3:-18025495 | MS.gene95337:CDS |
| GTAAACTTTACCAAGGTTAC+CGG | 0.407938 | 1.3:+18025789 | None:intergenic |
| ACAACCCAATTAAGTTCAAT+TGG | 0.412295 | 1.3:-18026333 | MS.gene95337:CDS |
| ACAGTAGCACTCCAACTATC+TGG | 0.413891 | 1.3:+18026261 | None:intergenic |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 1.3:-18025764 | MS.gene95337:CDS |
| TGCTGAAGCATATGGAATCT+TGG | 0.418789 | 1.3:+18024652 | None:intergenic |
| TGTCTTCCCTACCAGATAGT+TGG | 0.424640 | 1.3:-18026272 | MS.gene95337:CDS |
| CCCACTGCATGGCCAATGTC+TGG | 0.427278 | 1.3:+18024593 | None:intergenic |
| CTCTGGTCTCTTACTCTAGC+AGG | 0.428476 | 1.3:+18024519 | None:intergenic |
| TTAAGTTGAATGGGTCTGTA+TGG | 0.429127 | 1.3:-18025717 | MS.gene95337:CDS |
| ATTTGACGATGTTCGTGATC+TGG | 0.433721 | 1.3:-18026199 | MS.gene95337:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 1.3:-18025758 | MS.gene95337:CDS |
| TGTAGCCTTCGTCAGCCAAC+TGG | 0.439978 | 1.3:+18025638 | None:intergenic |
| CGTCTGAGGTGATTGTTCTT+GGG | 0.440972 | 1.3:+18024697 | None:intergenic |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 1.3:-18026165 | MS.gene95337:CDS |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 1.3:-18025925 | MS.gene95337:CDS |
| GAAGTTAAGATTAAGTTGAA+TGG | 0.447006 | 1.3:-18025727 | MS.gene95337:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 1.3:-18025875 | MS.gene95337:CDS |
| CAGTCTTCCACGGTGATGAT+TGG | 0.449152 | 1.3:-18025612 | MS.gene95337:CDS |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 1.3:-18026681 | MS.gene95337:CDS |
| CACAGCTGTGAGTGGCTCCT+CGG | 0.454182 | 1.3:-18026238 | MS.gene95337:CDS |
| AATCTATGGCACAAGAGATT+AGG | 0.468903 | 1.3:-18025481 | MS.gene95337:CDS |
| ACAGCTGTGAGTGGCTCCTC+GGG | 0.470989 | 1.3:-18026237 | MS.gene95337:CDS |
| TTAGGCCATATGAGTGAAAA+GGG | 0.472747 | 1.3:-18025463 | MS.gene95337:CDS |
| TGAACTTTATTTGATGCTGA+AGG | 0.474628 | 1.3:+18026435 | None:intergenic |
| AAGTTAAGATTAAGTTGAAT+GGG | 0.477594 | 1.3:-18025726 | MS.gene95337:CDS |
| TTGTTGTAACTGCAATCAAA+TGG | 0.485950 | 1.3:+18025515 | None:intergenic |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 1.3:+18025767 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 1.3:-18025784 | MS.gene95337:CDS |
| ATTAGGCCATATGAGTGAAA+AGG | 0.493480 | 1.3:-18025464 | MS.gene95337:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 1.3:-18025757 | MS.gene95337:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 1.3:-18025876 | MS.gene95337:CDS |
| AATTATATCCCCGGTAACCT+TGG | 0.501940 | 1.3:-18025799 | MS.gene95337:CDS |
| TGAGGCGGTTGTTTACGCTT+CGG | 0.506448 | 1.3:-18026407 | MS.gene95337:CDS |
| GATGATTGGAAGATTTCAAA+AGG | 0.514140 | 1.3:-18025598 | MS.gene95337:CDS |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 1.3:-18025862 | MS.gene95337:CDS |
| CAACATGGGCGATGCCAAAA+CGG | 0.525887 | 1.3:-18024753 | MS.gene95337:CDS |
| GAGGTGATTGTTCTTGGGAT+AGG | 0.529200 | 1.3:+18024702 | None:intergenic |
| TATGAGTGAAAAGGGGATGA+AGG | 0.531430 | 1.3:-18025455 | MS.gene95337:intron |
| TTCGTCAGCCAACTGGCCTA+CGG | 0.532309 | 1.3:+18025645 | None:intergenic |
| CTTAATCTCCGTAGGCCAGT+TGG | 0.533019 | 1.3:-18025653 | MS.gene95337:CDS |
| CTTTGTATGCAATACTGAAG+AGG | 0.534584 | 1.3:+18026131 | None:intergenic |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 1.3:-18026595 | MS.gene95337:CDS |
| TGCGTCACCTCCTCCTGAGG+TGG | 0.540756 | 1.3:+18025912 | None:intergenic |
| TAAACTTTACCAAGGTTACC+GGG | 0.543499 | 1.3:+18025790 | None:intergenic |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 1.3:-18026166 | MS.gene95337:CDS |
| GGTACTCTTTACAAGACAGC+TGG | 0.550162 | 1.3:-18025544 | MS.gene95337:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 1.3:-18026425 | MS.gene95337:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 1.3:-18025751 | MS.gene95337:CDS |
| GCCAGACATTGGCCATGCAG+TGG | 0.553894 | 1.3:-18024594 | MS.gene95337:CDS |
| CCAGACATTGGCCATGCAGT+GGG | 0.555550 | 1.3:-18024593 | MS.gene95337:CDS |
| AACCACCGCTGGTCTTATGA+AGG | 0.557775 | 1.3:-18026481 | MS.gene95337:CDS |
| TAGCACTCCAACTATCTGGT+AGG | 0.558134 | 1.3:+18026265 | None:intergenic |
| TAAGTTGAATGGGTCTGTAT+GGG | 0.558149 | 1.3:-18025716 | MS.gene95337:CDS |
| TTTACGCTTCGGATGACAGA+AGG | 0.562705 | 1.3:-18026396 | MS.gene95337:CDS |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 1.3:-18026693 | MS.gene95337:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 1.3:-18025919 | MS.gene95337:CDS |
| GTCTGTACGAGGCCAGACAT+TGG | 0.576943 | 1.3:-18024605 | MS.gene95337:CDS |
| TGCTAACAACTCCCACTGCA+TGG | 0.579223 | 1.3:+18024582 | None:intergenic |
| TTCTTCAAGAATTATATCCC+CGG | 0.581954 | 1.3:-18025808 | MS.gene95337:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.586306 | 1.3:-18025887 | MS.gene95337:CDS |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 1.3:-18026385 | MS.gene95337:CDS |
| GCTACTGTCACAGCTGTGAG+TGG | 0.594785 | 1.3:-18026246 | MS.gene95337:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 1.3:-18026176 | MS.gene95337:CDS |
| AGCACTCCAACTATCTGGTA+GGG | 0.597976 | 1.3:+18026266 | None:intergenic |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 1.3:-18026422 | MS.gene95337:CDS |
| CCAAGAACAATCACCTCAGA+CGG | 0.601832 | 1.3:-18024696 | MS.gene95337:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 1.3:-18026558 | MS.gene95337:CDS |
| TGGAAGTTTGATGTACGCAA+TGG | 0.603643 | 1.3:-18024627 | MS.gene95337:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 1.3:-18025922 | MS.gene95337:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 1.3:-18026584 | MS.gene95337:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 1.3:-18026688 | MS.gene95337:CDS |
| GGCTACACAACAGTCTTCCA+CGG | 0.609498 | 1.3:-18025622 | MS.gene95337:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 1.3:+18026559 | None:intergenic |
| TATGGCTGCAGACGAAGGAA+AGG | 0.614378 | 1.3:-18026715 | MS.gene95337:CDS |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 1.3:+18025782 | None:intergenic |
| GGAGTTATGGCTGCAGACGA+AGG | 0.617375 | 1.3:-18026720 | None:intergenic |
| ATTCACCCAACTCTCTCCGT+CGG | 0.618585 | 1.3:+18026160 | None:intergenic |
| AGCCTTCATAAGACCAGCGG+TGG | 0.620835 | 1.3:+18026479 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 1.3:-18025947 | MS.gene95337:CDS |
| GCAAAAGAGAAAACCACCGC+TGG | 0.626545 | 1.3:-18026492 | MS.gene95337:CDS |
| CAATGCGTCACCTCCTCCTG+AGG | 0.628987 | 1.3:+18025909 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.629176 | 1.3:-18026313 | MS.gene95337:CDS |
| AGAACAATCACCTCAGACGG+AGG | 0.642335 | 1.3:-18024693 | MS.gene95337:CDS |
| ATAGCTCGCGGTAGAAAGAG+TGG | 0.649534 | 1.3:-18025565 | MS.gene95337:CDS |
| GTAGGCCAGTTGGCTGACGA+AGG | 0.651906 | 1.3:-18025643 | MS.gene95337:CDS |
| CAAAACGGTTAGCACGTCGT+TGG | 0.663704 | 1.3:-18024738 | MS.gene95337:CDS |
| GCTCCCAGCAAAGAATCAAG+AGG | 0.671318 | 1.3:-18025959 | MS.gene95337:CDS |
| AAATCTTCCAATCATCACCG+TGG | 0.678539 | 1.3:+18025605 | None:intergenic |
| TAGGCCATATGAGTGAAAAG+GGG | 0.691407 | 1.3:-18025462 | MS.gene95337:CDS |
| AAACTTTACCAAGGTTACCG+GGG | 0.698437 | 1.3:+18025791 | None:intergenic |
| TGTACGCAATGGTCTGTACG+AGG | 0.702527 | 1.3:-18024616 | MS.gene95337:CDS |
| AAGAGCCTTCATAAGACCAG+CGG | 0.707222 | 1.3:+18026476 | None:intergenic |
| GGTGCAATGACGATAGCTCG+CGG | 0.741901 | 1.3:-18025577 | MS.gene95337:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTGAAGAATTCTTTA+TGG | + | chr1.3:18025428-18025447 | None:intergenic | 20.0% |
| !! | ATTCTTGAAGAATTCTTTAT+GGG | + | chr1.3:18025427-18025446 | None:intergenic | 20.0% |
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr1.3:18025517-18025536 | MS.gene95337:CDS | 20.0% |
| ! | ATATGTGAAGACTATATACT+TGG | - | chr1.3:18025861-18025880 | MS.gene95337:CDS | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr1.3:18024818-18024837 | MS.gene95337:intron | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr1.3:18025748-18025767 | MS.gene95337:CDS | 25.0% |
| ! | GATACCAATTGAACTTAATT+GGG | + | chr1.3:18024917-18024936 | None:intergenic | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr1.3:18025516-18025535 | MS.gene95337:CDS | 25.0% |
| ACAACCCAATTAAGTTCAAT+TGG | - | chr1.3:18024910-18024929 | MS.gene95337:intron | 30.0% | |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr1.3:18024821-18024840 | MS.gene95337:intron | 30.0% | |
| CGATACCAATTGAACTTAAT+TGG | + | chr1.3:18024918-18024937 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr1.3:18025645-18025664 | MS.gene95337:CDS | 30.0% | |
| GTATTGCATACAAAGTAAAG+AGG | - | chr1.3:18025120-18025139 | MS.gene95337:intron | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr1.3:18024550-18024569 | MS.gene95337:CDS | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr1.3:18025479-18025498 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr1.3:18025479-18025498 | MS.gene95337:CDS | 30.0% | |
| TTCTTCAAGAATTATATCCC+CGG | - | chr1.3:18025435-18025454 | MS.gene95337:intron | 30.0% | |
| TTGTTGTAACTGCAATCAAA+TGG | + | chr1.3:18025731-18025750 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr1.3:18026476-18026495 | MS.gene95337:CDS | 30.0% |
| ! | TGAACTTTATTTGATGCTGA+AGG | + | chr1.3:18024811-18024830 | None:intergenic | 30.0% |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr1.3:18026475-18026494 | MS.gene95337:CDS | 30.0% |
| AAAGAAACCAGAATCGATGA+AGG | - | chr1.3:18024648-18024667 | MS.gene95337:CDS | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr1.3:18025161-18025180 | MS.gene95337:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr1.3:18025459-18025478 | MS.gene95337:CDS | 35.0% | |
| AAGGAAAACTACCAAGTCTT+CGG | - | chr1.3:18025823-18025842 | MS.gene95337:CDS | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr1.3:18025762-18025781 | MS.gene95337:CDS | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr1.3:18025762-18025781 | None:intergenic | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr1.3:18024555-18024574 | MS.gene95337:CDS | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr1.3:18025582-18025601 | MS.gene95337:CDS | 35.0% | |
| ACTCAAAATCTATCGAGTGT+TGG | - | chr1.3:18025223-18025242 | MS.gene95337:intron | 35.0% | |
| AGAAATTCAACCAGAGGAAA+TGG | - | chr1.3:18025144-18025163 | MS.gene95337:intron | 35.0% | |
| ATAGTCAGCTTTCAGATAAG+TGG | - | chr1.3:18025894-18025913 | MS.gene95337:CDS | 35.0% | |
| ATATACATGCACCAATCAGA+AGG | - | chr1.3:18026081-18026100 | MS.gene95337:intron | 35.0% | |
| ATCACGAGAGATAAGCAAAA+AGG | - | chr1.3:18026416-18026435 | MS.gene95337:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr1.3:18026244-18026263 | None:intergenic | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr1.3:18025804-18025823 | MS.gene95337:CDS | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr1.3:18025779-18025798 | MS.gene95337:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr1.3:18026596-18026615 | MS.gene95337:CDS | 35.0% | |
| ATTTCTATTGACCGAAGACT+TGG | + | chr1.3:18025837-18025856 | None:intergenic | 35.0% | |
| CAGAAGAAGTGAAGAGAATA+TGG | - | chr1.3:18026109-18026128 | MS.gene95337:intron | 35.0% | |
| CTTTGTATGCAATACTGAAG+AGG | + | chr1.3:18025115-18025134 | None:intergenic | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr1.3:18025486-18025505 | MS.gene95337:CDS | 35.0% | |
| GACACTTCAAAAATCAGTGT+AGG | - | chr1.3:18025262-18025281 | MS.gene95337:intron | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr1.3:18026365-18026384 | MS.gene95337:CDS | 35.0% | |
| GTAAACTTTACCAAGGTTAC+CGG | + | chr1.3:18025457-18025476 | None:intergenic | 35.0% | |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr1.3:18026358-18026377 | MS.gene95337:CDS | 35.0% | |
| TAAACTTTACCAAGGTTACC+GGG | + | chr1.3:18025456-18025475 | None:intergenic | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr1.3:18025485-18025504 | MS.gene95337:CDS | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr1.3:18025780-18025799 | MS.gene95337:CDS | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr1.3:18025464-18025483 | None:intergenic | 35.0% | |
| ! | ACTACGATGATTTCTGGATT+TGG | + | chr1.3:18025196-18025215 | None:intergenic | 35.0% |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr1.3:18025576-18025595 | None:intergenic | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr1.3:18025577-18025596 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr1.3:18025527-18025546 | MS.gene95337:CDS | 35.0% |
| ! | TGACGCATTGATATGTTCTT+TGG | - | chr1.3:18025347-18025366 | MS.gene95337:intron | 35.0% |
| !! | GTTGATGATATGTTAGTAGC+AGG | - | chr1.3:18026296-18026315 | MS.gene95337:CDS | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr1.3:18025526-18025545 | MS.gene95337:CDS | 35.0% |
| AAACTTTACCAAGGTTACCG+GGG | + | chr1.3:18025455-18025474 | None:intergenic | 40.0% | |
| AAATCTTCCAATCATCACCG+TGG | + | chr1.3:18025641-18025660 | None:intergenic | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr1.3:18026176-18026195 | None:intergenic | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr1.3:18024659-18024678 | MS.gene95337:CDS | 40.0% | |
| AATTATATCCCCGGTAACCT+TGG | - | chr1.3:18025444-18025463 | MS.gene95337:intron | 40.0% | |
| AGAGGAAGAAATTCAACCAG+AGG | - | chr1.3:18025138-18025157 | MS.gene95337:intron | 40.0% | |
| AGGCTAAAGAAGAGCTTGTA+TGG | - | chr1.3:18026137-18026156 | MS.gene95337:CDS | 40.0% | |
| ATTTGACGATGTTCGTGATC+TGG | - | chr1.3:18025044-18025063 | MS.gene95337:intron | 40.0% | |
| CTGAGAACTACGATGATTTC+TGG | + | chr1.3:18025202-18025221 | None:intergenic | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr1.3:18026602-18026621 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr1.3:18026240-18026259 | None:intergenic | 40.0% | |
| GGAGGAAGAAAAAGAACTCA+TGG | - | chr1.3:18026568-18026587 | MS.gene95337:CDS | 40.0% | |
| GGTACAAGTATACATGTGTG+TGG | - | chr1.3:18026034-18026053 | MS.gene95337:intron | 40.0% | |
| GGTCAGGCAAAGAAAATTCT+TGG | - | chr1.3:18026386-18026405 | MS.gene95337:CDS | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr1.3:18026193-18026212 | MS.gene95337:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr1.3:18025781-18025800 | MS.gene95337:CDS | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr1.3:18025788-18025807 | MS.gene95337:CDS | 40.0% | |
| TGACATGAAGGATTTAGGTC+AGG | - | chr1.3:18026370-18026389 | MS.gene95337:CDS | 40.0% | |
| TGCATGTATATCTCCTCAAG+CGG | + | chr1.3:18026072-18026091 | None:intergenic | 40.0% | |
| TGCTGAAGCATATGGAATCT+TGG | + | chr1.3:18026594-18026613 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr1.3:18026616-18026635 | MS.gene95337:CDS | 40.0% | |
| TGTTGGAATTGTGGAAAGAC+AGG | - | chr1.3:18025240-18025259 | MS.gene95337:intron | 40.0% | |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr1.3:18025581-18025600 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATCCTTCTGAT+TGG | + | chr1.3:18026095-18026114 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr1.3:18025356-18025375 | MS.gene95337:intron | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr1.3:18025788-18025807 | None:intergenic | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr1.3:18024930-18024949 | MS.gene95337:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr1.3:18025025-18025044 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr1.3:18024658-18024677 | None:intergenic | 40.0% |
| !! | TCTATCGAGTGTTGGAATTG+TGG | - | chr1.3:18025231-18025250 | MS.gene95337:intron | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr1.3:18024640-18024659 | None:intergenic | 40.0% |
| AAGAGCCTTCATAAGACCAG+CGG | + | chr1.3:18024770-18024789 | None:intergenic | 45.0% | |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr1.3:18025911-18025930 | MS.gene95337:CDS | 45.0% | |
| ACAGTAGCACTCCAACTATC+TGG | + | chr1.3:18024985-18025004 | None:intergenic | 45.0% | |
| AGCACTCCAACTATCTGGTA+GGG | + | chr1.3:18024980-18024999 | None:intergenic | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr1.3:18024687-18024706 | None:intergenic | 45.0% | |
| CCAAGAACAATCACCTCAGA+CGG | - | chr1.3:18026547-18026566 | MS.gene95337:CDS | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr1.3:18024685-18024704 | MS.gene95337:CDS | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr1.3:18026197-18026216 | MS.gene95337:CDS | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr1.3:18025296-18025315 | MS.gene95337:intron | 45.0% | |
| GAGGTGATTGTTCTTGGGAT+AGG | + | chr1.3:18026544-18026563 | None:intergenic | 45.0% | |
| GGTACTCTTTACAAGACAGC+TGG | - | chr1.3:18025699-18025718 | MS.gene95337:CDS | 45.0% | |
| GTGAAGAGAATATGGTGTGC+AGG | - | chr1.3:18026117-18026136 | MS.gene95337:intron | 45.0% | |
| TAGCACTCCAACTATCTGGT+AGG | + | chr1.3:18024981-18025000 | None:intergenic | 45.0% | |
| TCGAACCTTTCGTCAAACCA+CGG | + | chr1.3:18025941-18025960 | None:intergenic | 45.0% | |
| TCGCCTCTTGATTCTTTGCT+GGG | + | chr1.3:18025290-18025309 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr1.3:18025492-18025511 | MS.gene95337:CDS | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr1.3:18024971-18024990 | MS.gene95337:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+TGG | + | chr1.3:18025291-18025310 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr1.3:18025067-18025086 | MS.gene95337:intron | 45.0% | |
| TTTACCACGTCCATTTCCTC+TGG | + | chr1.3:18025157-18025176 | None:intergenic | 45.0% | |
| TTTACGCTTCGGATGACAGA+AGG | - | chr1.3:18024847-18024866 | MS.gene95337:intron | 45.0% | |
| ! | CGTCTGAGGTGATTGTTCTT+GGG | + | chr1.3:18026549-18026568 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr1.3:18026563-18026582 | None:intergenic | 45.0% |
| AAACCACGGCTCTCCTTCTT+TGG | + | chr1.3:18025927-18025946 | None:intergenic | 50.0% | |
| AACCACGGCTCTCCTTCTTT+GGG | + | chr1.3:18025926-18025945 | None:intergenic | 50.0% | |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr1.3:18024562-18024581 | MS.gene95337:CDS | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr1.3:18026226-18026245 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr1.3:18026550-18026569 | MS.gene95337:CDS | 50.0% | |
| ATAGCTCGCGGTAGAAAGAG+TGG | - | chr1.3:18025678-18025697 | MS.gene95337:CDS | 50.0% | |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr1.3:18026156-18026175 | MS.gene95337:CDS | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr1.3:18025086-18025105 | None:intergenic | 50.0% | |
| CAAAACGGTTAGCACGTCGT+TGG | - | chr1.3:18026505-18026524 | MS.gene95337:CDS | 50.0% | |
| CAACATGGGCGATGCCAAAA+CGG | - | chr1.3:18026490-18026509 | MS.gene95337:CDS | 50.0% | |
| CAGTCTTCCACGGTGATGAT+TGG | - | chr1.3:18025631-18025650 | MS.gene95337:CDS | 50.0% | |
| CTTAATCTCCGTAGGCCAGT+TGG | - | chr1.3:18025590-18025609 | MS.gene95337:CDS | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr1.3:18025381-18025400 | MS.gene95337:intron | 50.0% | |
| GATGAAAGAGCTTCCGCTTG+AGG | - | chr1.3:18026056-18026075 | MS.gene95337:intron | 50.0% | |
| GCAAAAGAGAAAACCACCGC+TGG | - | chr1.3:18024751-18024770 | MS.gene95337:CDS | 50.0% | |
| GCTCCCAGCAAAGAATCAAG+AGG | - | chr1.3:18025284-18025303 | MS.gene95337:intron | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr1.3:18025368-18025387 | MS.gene95337:intron | 50.0% | |
| GGCTACACAACAGTCTTCCA+CGG | - | chr1.3:18025621-18025640 | MS.gene95337:CDS | 50.0% | |
| GGTTTGACGAAAGGTTCGAC+CGG | - | chr1.3:18025942-18025961 | MS.gene95337:CDS | 50.0% | |
| TCAACCAGAGGAAATGGACG+TGG | - | chr1.3:18025150-18025169 | MS.gene95337:intron | 50.0% | |
| TCAGGAGGACTTTCGACACA+AGG | + | chr1.3:18025970-18025989 | None:intergenic | 50.0% | |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr1.3:18026162-18026181 | MS.gene95337:CDS | 50.0% | |
| TGAGGCGGTTGTTTACGCTT+CGG | - | chr1.3:18024836-18024855 | MS.gene95337:intron | 50.0% | |
| TGCTAACAACTCCCACTGCA+TGG | + | chr1.3:18026664-18026683 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr1.3:18025367-18025386 | MS.gene95337:intron | 50.0% | |
| TGTACGCAATGGTCTGTACG+AGG | - | chr1.3:18026627-18026646 | MS.gene95337:CDS | 50.0% | |
| TGTTCCGTTGAGTGCAGCAA+CGG | - | chr1.3:18026010-18026029 | MS.gene95337:intron | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr1.3:18025321-18025340 | MS.gene95337:intron | 50.0% |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr1.3:18026163-18026182 | None:intergenic | 50.0% |
| ! | CAACGACGTGCTAACCGTTT+TGG | + | chr1.3:18026507-18026526 | None:intergenic | 50.0% |
| ! | CCGTCTGAGGTGATTGTTCT+TGG | + | chr1.3:18026550-18026569 | None:intergenic | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr1.3:18025318-18025337 | MS.gene95337:intron | 50.0% |
| !! | AACCACCGCTGGTCTTATGA+AGG | - | chr1.3:18024762-18024781 | MS.gene95337:CDS | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr1.3:18024569-18024588 | MS.gene95337:CDS | 50.0% |
| ACCACGGCTCTCCTTCTTTG+GGG | + | chr1.3:18025925-18025944 | None:intergenic | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr1.3:18025077-18025096 | MS.gene95337:intron | 55.0% | |
| AGCCTTCATAAGACCAGCGG+TGG | + | chr1.3:18024767-18024786 | None:intergenic | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr1.3:18026650-18026669 | MS.gene95337:CDS | 55.0% | |
| CCTCCTGACCAAGTGTGTTC+AGG | - | chr1.3:18025982-18026001 | MS.gene95337:intron | 55.0% | |
| CCTGAACACACTTGGTCAGG+AGG | + | chr1.3:18025985-18026004 | None:intergenic | 55.0% | |
| CCTGACCAAGTGTGTTCAGG+CGG | - | chr1.3:18025985-18026004 | MS.gene95337:intron | 55.0% | |
| GAGAGCCGTGGTTTGACGAA+AGG | - | chr1.3:18025933-18025952 | MS.gene95337:CDS | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr1.3:18025078-18025097 | MS.gene95337:intron | 55.0% | |
| GCTACTGTCACAGCTGTGAG+TGG | - | chr1.3:18024997-18025016 | MS.gene95337:intron | 55.0% | |
| GGACTTTCGACACAAGGAGC+CGG | + | chr1.3:18025964-18025983 | None:intergenic | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr1.3:18025666-18025685 | MS.gene95337:CDS | 55.0% | |
| GTCTGTACGAGGCCAGACAT+TGG | - | chr1.3:18026638-18026657 | MS.gene95337:CDS | 55.0% | |
| TGTAGCCTTCGTCAGCCAAC+TGG | + | chr1.3:18025608-18025627 | None:intergenic | 55.0% | |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr1.3:18024858-18024877 | MS.gene95337:intron | 55.0% |
| ! | TTCGTCAGCCAACTGGCCTA+CGG | + | chr1.3:18025601-18025620 | None:intergenic | 55.0% |
| ACACGCCGCCTGAACACACT+TGG | + | chr1.3:18025993-18026012 | None:intergenic | 60.0% | |
| ACAGCTGTGAGTGGCTCCTC+GGG | - | chr1.3:18025006-18025025 | MS.gene95337:intron | 60.0% | |
| ACCCCAAAGAAGGAGAGCCG+TGG | - | chr1.3:18025921-18025940 | MS.gene95337:CDS | 60.0% | |
| ACCGCCGTTGCTGCACTCAA+CGG | + | chr1.3:18026017-18026036 | None:intergenic | 60.0% | |
| CAATGCGTCACCTCCTCCTG+AGG | + | chr1.3:18025337-18025356 | None:intergenic | 60.0% | |
| CACAGCTGTGAGTGGCTCCT+CGG | - | chr1.3:18025005-18025024 | MS.gene95337:intron | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr1.3:18026653-18026672 | None:intergenic | 60.0% | |
| CCGCCTGAACACACTTGGTC+AGG | + | chr1.3:18025988-18026007 | None:intergenic | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr1.3:18026649-18026668 | MS.gene95337:CDS | 60.0% | |
| GTAGGCCAGTTGGCTGACGA+AGG | - | chr1.3:18025600-18025619 | MS.gene95337:CDS | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr1.3:18025324-18025343 | MS.gene95337:intron | 60.0% | |
| TCCGTTGAGTGCAGCAACGG+CGG | - | chr1.3:18026013-18026032 | MS.gene95337:intron | 60.0% | |
| TGCGTCACCTCCTCCTGAGG+TGG | + | chr1.3:18025334-18025353 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 18024529 | 18026736 | 18024529 | ID=MS.gene95337 |
| chr1.3 | mRNA | 18024529 | 18026736 | 18024529 | ID=MS.gene95337.t1;Parent=MS.gene95337 |
| chr1.3 | exon | 18026132 | 18026736 | 18026132 | ID=MS.gene95337.t1.exon1;Parent=MS.gene95337.t1 |
| chr1.3 | CDS | 18026132 | 18026736 | 18026132 | ID=cds.MS.gene95337.t1;Parent=MS.gene95337.t1 |
| chr1.3 | exon | 18025456 | 18025981 | 18025456 | ID=MS.gene95337.t1.exon2;Parent=MS.gene95337.t1 |
| chr1.3 | CDS | 18025456 | 18025981 | 18025456 | ID=cds.MS.gene95337.t1;Parent=MS.gene95337.t1 |
| chr1.3 | exon | 18024529 | 18024816 | 18024529 | ID=MS.gene95337.t1.exon3;Parent=MS.gene95337.t1 |
| chr1.3 | CDS | 18024529 | 18024816 | 18024529 | ID=cds.MS.gene95337.t1;Parent=MS.gene95337.t1 |
| Gene Sequence |
| Protein sequence |
