AlfalfaGEDB | MS.gene95462

M. sativa cultivar XinJiangDaYe / MS.gene95462

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95462.t1	XP_003590733.2	98.2	114	2	0	1	114	1	114	3.40E-54	221.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95462.t1	Q10MN5	56.2	48	21	0	150	197	168	215	5.8e-10	66.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95462.t1	G7I2P6	98.2	114	2	0	1	114	1	114	2.5e-54	221.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050719	MS.gene95462	0.805403	1.36E-49	-1.69E-46
MS.gene050721	MS.gene95462	0.806257	8.98E-50	-1.69E-46
MS.gene051247	MS.gene95462	0.822924	1.83E-53	-1.69E-46
MS.gene051744	MS.gene95462	0.815366	9.59E-52	-1.69E-46
MS.gene051957	MS.gene95462	0.801893	7.26E-49	-1.69E-46
MS.gene052773	MS.gene95462	0.802955	4.39E-49	-1.69E-46
MS.gene053226	MS.gene95462	0.813123	3.00E-51	-1.69E-46
MS.gene055778	MS.gene95462	0.807401	5.15E-50	-1.69E-46
MS.gene055818	MS.gene95462	0.811155	8.06E-51	-1.69E-46
MS.gene061040	MS.gene95462	-0.80165	8.15E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95462.t1	MTR_1g073190	98.246	114	2	0	1	114	1	114	1.70e-78	232
MS.gene95462.t1	MTR_1g073190	98.058	103	2	0	1	103	1	103	2.59e-69	208
MS.gene95462.t1	MTR_1g087880	71.212	66	18	1	133	197	122	187	1.52e-20	90.9
MS.gene95462.t1	MTR_7g109130	59.091	66	26	1	133	197	126	191	1.74e-16	79.0
MS.gene95462.t1	MTR_7g109130	59.091	66	26	1	133	197	126	191	1.77e-16	79.0
MS.gene95462.t1	MTR_1g083770	64.583	48	17	0	150	197	145	192	2.07e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95462.t1	AT1G48200	46.296	108	55	2	5	110	3	109	2.23e-20	84.0
MS.gene95462.t1	AT2G47500	63.636	44	16	0	150	193	147	190	6.24e-12	65.5
MS.gene95462.t1	AT2G47500	63.636	44	16	0	150	193	147	190	6.97e-12	65.5

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Find 44 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGGGCTAATGGTGTA+TGG	0.492107	1.3:+52643823	MS.gene95462:CDS
AAGGATTGTGAGTAGTGTAT+TGG	0.499309	1.3:+52643773	MS.gene95462:CDS
AATGGTGTATGGAAATTTGG+TGG	0.640177	1.3:+52643834	MS.gene95462:CDS
AATTTCATAGAGCCTTGCCA+AGG	0.629006	1.3:-52640175	None:intergenic
ACAGTGATCAATGTTGGTTT+GGG	0.553382	1.3:+52639982	MS.gene95462:CDS
AGCCGAATCAGACGCTGCTT+CGG	0.457423	1.3:-52640145	None:intergenic
AGGAAAGATGCTAATCCAGC+TGG	0.568309	1.3:+52641029	MS.gene95462:CDS
AGTAACACAGTGATCAATGT+TGG	0.560249	1.3:+52639976	MS.gene95462:CDS
AGTCTATTAGGAACACTCTT+TGG	0.246535	1.3:+52640100	MS.gene95462:CDS
AGTTTGTTTCCATTCACTAT+AGG	0.370258	1.3:-52643805	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGTCGTATAATTTGAGA+TGG	+	chr1.3:52641976-52641995	MS.gene95462:intron	30.0%
AAAGTGATTATGGAGGATTA+GGG	+	chr1.3:52643106-52643125	MS.gene95462:intron	30.0%
ACCACAACAGAAGTAATTAT+AGG	-	chr1.3:52640990-52641009	None:intergenic	30.0%
ACCTATAATTACTTCTGTTG+TGG	+	chr1.3:52640986-52641005	MS.gene95462:intron	30.0%
AGTCAAAGGAAAAATATCCA+AGG	-	chr1.3:52644389-52644408	None:intergenic	30.0%
ATAGGTAAGAAATCATGACA+TGG	-	chr1.3:52640972-52640991	None:intergenic	30.0%
ATAGTGAATGGAAACAAACT+GGG	+	chr1.3:52643808-52643827	MS.gene95462:CDS	30.0%
ATCTTGTAAAGCAGTAGTAA+AGG	+	chr1.3:52640857-52640876	MS.gene95462:intron	30.0%
ATTATACCAATCAGGTGAAT+TGG	+	chr1.3:52640911-52640930	MS.gene95462:intron	30.0%
ATTGCAAAAAAGTAGGCTAT+GGG	-	chr1.3:52641562-52641581	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	52639928	52644452	52639928	ID=MS.gene95462
chr1.3	mRNA	52639928	52644452	52639928	ID=MS.gene95462.t1;Parent=MS.gene95462
chr1.3	exon	52639928	52640234	52639928	ID=MS.gene95462.t1.exon1;Parent=MS.gene95462.t1
chr1.3	CDS	52639928	52640234	52639928	ID=cds.MS.gene95462.t1;Parent=MS.gene95462.t1
chr1.3	exon	52641018	52641050	52641018	ID=MS.gene95462.t1.exon2;Parent=MS.gene95462.t1
chr1.3	CDS	52641018	52641050	52641018	ID=cds.MS.gene95462.t1;Parent=MS.gene95462.t1
chr1.3	exon	52643548	52643657	52643548	ID=MS.gene95462.t1.exon3;Parent=MS.gene95462.t1
chr1.3	CDS	52643548	52643657	52643548	ID=cds.MS.gene95462.t1;Parent=MS.gene95462.t1
chr1.3	exon	52643759	52643947	52643759	ID=MS.gene95462.t1.exon4;Parent=MS.gene95462.t1
chr1.3	CDS	52643759	52643947	52643759	ID=cds.MS.gene95462.t1;Parent=MS.gene95462.t1
chr1.3	exon	52644339	52644452	52644339	ID=MS.gene95462.t1.exon5;Parent=MS.gene95462.t1
chr1.3	CDS	52644339	52644452	52644339	ID=cds.MS.gene95462.t1;Parent=MS.gene95462.t1

Gene Sequence

>MS.gene95462

ATGGAGTTTGTTCATAAAATAGTCGACATAGCTAAGAGAGCTTCAGAGAGTAACACAGTGATCAATGTTGGTTTGGGTGCTGTTTTTGCAATTCTGGGAGCGAGATCTTATAATCAGCAAAAGATCATTGAAGCTTTAGAAGCTGAGAAGGAATCTTTAACCAAAACTAATAAGTCTATTAGGAACACTCTTTGGGATTGGAAACAGCAGCTTTATGCCGAAGCAGCGTCTGATTCGGCTCCAGTTCCCTTGGCAAGGCTCTATGAAATTTACGGCGAAGCTGCGCCTCCTCAACAATCTGCACCTGGTAATTTGTTTTTATCTCTTCTCTTGATATAGCATTAACCAATTCAATGAGGCAATGGAAGTGGCTAAAATGATTGTATGCATTTATATGGAAGAGATGAGTTATGCATTGCTTTGTGTGAGATATTTTCATTGCTAGCTTGCATGATAGGTTTCTACAATCATTTTTCGGCTCCATATAGTTTCCTGCGAGTTGTGCTTTTGTGTTTGATGAGTATGTGTATTAGTATGCTTAAAATTTGATGAATTGTTTGAGAGGGAATCTAGTGTTGTCAATTACGAAATGTTTCATTGCTAGTTTATTGCAACTCTTTTGTATCTCTTTGTAAGAAACTCATTGATAGTGGATCTGAGAGCCGCTCTCTCCTCCAGATGTAATTCAATTTTTGGGCCAAAACGTGTAACCAAATATTGGTGTTTGTTCCTCTTCTCATTATTTGTTCTTTGCTTTGATTGTGGATTTGTTATACACATAGGTTACTGGATTAGATCTAGATCTGAATGTTCTTGCTTGCATTGTTTGTGTATTGCCATTGTTATTTGCTCCTCATCTTTGTTCTGGTTAGTTTTGACAAAGGGTCCAAATTTACAACAACTACCATGTAAATTTCTTTTACATGGCCATCTTGTAAAGCAGTAGTAAAGGTTTGATGTTGGTTATCCAAGTTAGATATTTTATTATACCAATCAGGTGAATTGGTGAATCCACATTTTCGATGCACAATGGATTGTATGCCATGTCATGATTTCTTACCTATAATTACTTCTGTTGTGGTTTTTCCAGGAGATCCTGTGAGGAAAGATGCTAATCCAGCTGGTCCGGCCAAAATAATGATCTGAGATCTGAATTGCTGTCAGGGTTTTATAAGCTTTTAGCGTTGCAAGGCTGTTAATAAAGTATTTTCTGAGAGTAGGAACATATAATTATGTTATCATATTATTTTTTCATTGGCAAGTAGATTTAGAACTTGGAGGAAAATTGTTTATTTATATACACATAAATAATGTAATTGTTTGCATAAGGATGTTAATGTCAGTTTTTTTGAGCAAATTAATGTCATTAACTAAATATAATACTTTCTTTTCTTTCATTTTCTACTCACTTTTACTCTTACCAAACAACTAACAAATCATCTCACTCTTACCACATATACCTCAGTTCTATTATTTCATATCTTTCTGGGCCATGTTTCACAGTCATGGGTGGTGCAAGACCTTTTGGGAAAAGGGTGTCGCTTCTGTTACCACCATGAAGCTTCACTTCATCTCCAAGTAGTGAAAAGATGAAAGGGCAAAATGAAGAGAAGTTAGGGTTTTGCTCAATCCCCATAGCCTACTTTTTTGCAATCTTTAATAAGCATATTTGGTTTTCTAAATGTGACAATGCAGAGAAGTAAAGTGTGAAGTTTGCATTTTTGGCTTTCTCATGGATCATATGCTTGTGCATTGGAAAACCCAATAAGCCCTGGTAGTATCATCATTTTTCACATTCCCTCCTTCTCAAATTATAAGTAGCTTTGAGAAAAAAAAATTGTCCTTAATTATAAGTCGATTTACAATACCAATAAAACATTAATGTACTTTTCCTATTATACCCTTAACTATTTATTATTATCTCTTTCAATTATTTAATTTATCTGTTCCATATAATTTATTAATTAAGGACAATTTTGTAAAATACCTCATAATATCTCTTTCTCATATCAAATTAATTACATTTCTTAATGCGTGTGAAATTTTCAAAACGTCGTATAATTTGAGATGGAGGGAGTACCTTTTATTTTTGGATCTTTTGCGGCGCTTTATTTTTTGGAAATAGAGGAGAATAAATACATAAAAGGTTGAGTAGGGTTTAAAATTATCTGTTTGAGTCACGACGCATGGACTCCTTGAAAATATGGATAGCTACTCATCCTCAATTAGATATCATTTTACTTGCGGATATCTCTGGGGCGTTATGGGTAGCGAATTACTTGGTCCTTTTTCTTGCTTTTCCCCTTGATAAAAAAATCTGCACCTTTTTTGTTTTAATTTTGGAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACTATTCTTAGATTTAGGCGGGATAAGTTTGCTAGTTAAGTAATAAAAATGTTATTTTGGCTTTTAGGGTTTCATGGAGACTACCATAGATTTAAATCTACTAAACTAGATAGGAAAATAATAGTCCGTGCTTTTTACGATTTTGCCCTTATTAAGGGCATTTTCGTCAATTGGTAAATGGACTCCCCTTGCCTATATATGTGTGAAAAGAAAAAAAAAAAAAAAAACAAAAGAAGTGGGACGAGAGAAACGGGAACGGGAGAGGAAGGGGGAACAGTGAAAGAAGGGTCGTCTTCTTCTTCATCAAAGAGGTGATTTTCTTATTCCTTCTTGAATCTAAGGCCATGCATGTCTCAGATTGAATGAGTTTTGTGCTTTTAATTCAAAAATTTAGGTTTTTGGTTTGTTTCTTTGCAATTTTGGGTTTAATTCATCTATGTGAAATTAAATTTCTCAATTTGTATAGTTTTGAACTATTGTGATCAGATTGTTTAGAAAGTAGCAATTAAGTTGTTGTGGGGTATGTTTGAATTGATGTTTAGTGTTTGGGTTAGAATTGATGTCTTTATAAGCAATAAGCTGTCAATTAAGTTGTTTTGCAGAAGCTTAAGTTGGAATACAAGTTGTTGCAGGTATGGTTATGTGTTCTTTATATTACCAATGCTATATTTAAGTTACCATATGAGTAGTTGGACTGATAAACTGTTTTGGGAGTTGACAGAATTGCTTAAATCATAATTGAGTTGTTTTAGAAGCTGACAGAAAGTGATTATGGAGGATTAGGGCAAGGGCAGAAGTGGATAAATTGTAATTAGGCCGCTGATTGGGATACAAGCTAGGAATAAGCTGTTTTTGGAAGAAGTTTGGTGAAACCCGTATTTGTGACAAGGCTCCACTAAAAGGGTAAGAACTCACTTCCTGTAACGTCGAATCAAGTGATTTTTGTTCTTGGTTTTTGATGATTAAACTGATTTGGGCTGTTTTTGGTTTAATTTGTGCTGAGAAGAAATATCAATGATTAGTTTCTGATGCAAATATGTCTCTGCAGAAGCTGTTTTTGTGTTTTAAAGGTGTTATAACTTTGTATAGCATATTTCTATTTTTTTCCCTAACTTCCGTGTGATGATTCTTTGCAAAACAGAGAGACATTTCATGGTGCACTGAGTTTTGCGGCCTCACTTTCCCACTTTGGCTGAATCTATAGGTACTGACTTCAATTCAATGTCTTTGGTGAATTTAGATGACCAGCAAGTTCACTCCTTAATGATGATGAGAGAAATAGCGTGTGGAGTTGTTGTTGGTCGAGATAGAAAGGTTAGATTATAGATATATAAGAAGTTAATTATGTTTTTACTATGAAAGTTCAATAAAATTTGACTTTGGCTTTCTTCTATGTAATTGATTTATGTTTTTAGGGAGGAAAATCATCAAGGATTGTGAGTAGTGTATTGGCTCTTAAATCCTATAGTGAATGGAAACAAACTGGGGCTAATGGTGTATGGAAATTTGGTGGTACTATCAAACCTGCAACCACTGCAAAATCTTGTGAGAAAAAACTGATAAATTTTCATTATGTTGGTGATTGGTATAATCAGGACTACACGGTTAGTTATTGCCTTTCATTTAAGTTTCATTTTGAGGGTTACTTCTGTCTCTATTTTTTTGAATGTGCCTGAATTTGCATTTTCATTTTTCATAACAATGATCGAACAATGTTAATTTTTTTTGTTACAAGTTCATTTCTTCTTTTCAATTCTAATGGAAAGGTAACATATTTTATATGTTGCTATTGTGTGTAAATTAAGATTGAACTGTGATCTGAATTTTGCTAAGTTGGCTTTTTATCTTACTGAATTTCTGGTAGAATAGACGTTATGGAATCTCAATCTAAACTATGATTGTATTTATTTTGTGGGGATGTTGTTTTGATTTCTCTACCAATTTTAGTAGAGTTTACACTGAATAGAAACGGTGTTCCTTTCTGTGCTACATTAGGTGACTCTCTCAGTGATATTGATTGCTGCTGGAGTTCTCATAGAAGCCCTTGGATATTTTTCCTTTGACTTTTTGGGTATAGCATGGCTTTCATTTCTGTTTTCTTCCAGGTGA

Protein sequence

>MS.gene95462.t1

MEFVHKIVDIAKRASESNTVINVGLGAVFAILGARSYNQQKIIEALEAEKESLTKTNKSIRNTLWDWKQQLYAEAASDSAPVPLARLYEIYGEAAPPQQSAPGDPVRKDANPAGTDFNSMSLVNLDDQQVHSLMMMREIACGVVVGRDRKGGKSSRIVSSVLALKSYSEWKQTGANGVWKFGGTIKPATTAKSCEKKLINFHYVGDWYNQDYTVTLSVILIAAGVLIEALGYFSFDFLGIAWLSFLFSSR