Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96009.t1 | XP_024632867.1 | 95.7 | 445 | 12 | 3 | 11 | 454 | 12 | 450 | 4.10E-263 | 916.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96009.t1 | A0A2K3P2S1 | 86.5 | 444 | 56 | 3 | 21 | 460 | 1 | 444 | 1.0e-239 | 838.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005469 | MS.gene96009 | PPI |
| MS.gene96009 | MS.gene07359 | PPI |
| MS.gene96009 | MS.gene20903 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96009.t1 | MTR_2g072850 | 95.733 | 375 | 14 | 2 | 87 | 460 | 1 | 374 | 0.0 | 753 |
| MS.gene96009.t1 | MTR_1g086170 | 58.520 | 446 | 173 | 4 | 18 | 460 | 15 | 451 | 0.0 | 541 |
| MS.gene96009.t1 | MTR_2g072880 | 100.000 | 70 | 0 | 0 | 11 | 80 | 12 | 81 | 7.07e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96009.t1 | AT1G17030 | 63.158 | 456 | 159 | 6 | 8 | 460 | 15 | 464 | 0.0 | 590 |
| MS.gene96009.t1 | AT2G47010 | 59.737 | 457 | 164 | 6 | 20 | 460 | 7 | 459 | 0.0 | 546 |
| MS.gene96009.t1 | AT2G47010 | 59.737 | 457 | 164 | 6 | 20 | 460 | 7 | 459 | 0.0 | 546 |
| MS.gene96009.t1 | AT2G47010 | 60.177 | 452 | 160 | 6 | 20 | 455 | 7 | 454 | 0.0 | 544 |
Find 119 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCAAGGCCATGGCAATTT+TGG | 0.102411 | 2.4:+23415039 | MS.gene96009:CDS |
| GCTACTAATGATGCAAATTT+AGG | 0.188556 | 2.4:+23415272 | MS.gene96009:CDS |
| AAACCGGGTGCGGCAAAATT+TGG | 0.201953 | 2.4:-23416229 | None:intergenic |
| GTCACTTACTTTGATGTTTA+CGG | 0.251158 | 2.4:-23408779 | None:intergenic |
| TCCAAGTACATTGCATTTCC+TGG | 0.273511 | 2.4:-23416152 | None:intergenic |
| ATGAGGTAGAATTGGCTCTT+TGG | 0.289938 | 2.4:-23415903 | None:intergenic |
| TATGTCCATTTCACTGTATC+TGG | 0.292490 | 2.4:-23415991 | None:intergenic |
| TTGCACGACGGTTCAGCTTC+CGG | 0.299722 | 2.4:-23416017 | None:intergenic |
| TGCACGACGGTTCAGCTTCC+GGG | 0.302729 | 2.4:-23416016 | None:intergenic |
| ACATCAAGCTCCCAAGTTCT+TGG | 0.314890 | 2.4:-23416302 | None:intergenic |
| ATTCTTGGACTTCCCATGTT+TGG | 0.320243 | 2.4:-23408732 | None:intergenic |
| CAACCTTCACCTTTCTTTGT+TGG | 0.329279 | 2.4:-23416269 | None:intergenic |
| TCAAAGCAATCAGCCATTCT+TGG | 0.331823 | 2.4:-23408747 | None:intergenic |
| ATTATGAGAGGAAGTTTCTA+TGG | 0.344727 | 2.4:+23415233 | MS.gene96009:CDS |
| TGCATGTTTATTTCTATTGT+TGG | 0.362091 | 2.4:+23408584 | MS.gene96009:CDS |
| ATAGAGAAGGTAGGCATCAT+AGG | 0.363316 | 2.4:-23416123 | None:intergenic |
| TCATGCCTCTAGTTTCATAA+TGG | 0.367780 | 2.4:-23415451 | None:intergenic |
| CCATGTCCATGAGGTAGAAT+TGG | 0.377010 | 2.4:-23415911 | None:intergenic |
| TGAGGCTGCGGGTTGCTATA+CGG | 0.379761 | 2.4:-23416197 | None:intergenic |
| GGAAAATCATGTTGTGGAAA+TGG | 0.382470 | 2.4:-23415134 | None:intergenic |
| ATCCAAAATTGCCATGGCCT+TGG | 0.390045 | 2.4:-23415041 | None:intergenic |
| ACCTTAAAATGTGGTGACTT+TGG | 0.390926 | 2.4:-23415846 | None:intergenic |
| CCGTCTCTGTTCGATGAACT+CGG | 0.402049 | 2.4:-23416091 | None:intergenic |
| CACCCGGTTTGGGGTGAGTA+CGG | 0.406860 | 2.4:+23416242 | MS.gene96009:CDS |
| AGGAAGTTGGTAATGGAAGT+TGG | 0.407243 | 2.4:+23415336 | MS.gene96009:CDS |
| CTTCTTATTATTCAGTGACT+TGG | 0.408994 | 2.4:+23415309 | MS.gene96009:CDS |
| TACCCGTACTCACCCCAAAC+CGG | 0.415426 | 2.4:-23416245 | None:intergenic |
| TGCAATGTACTTGGAGAAAC+CGG | 0.418599 | 2.4:+23416160 | MS.gene96009:CDS |
| GGACATTGTTCAAGATGGTT+GGG | 0.431398 | 2.4:-23416041 | None:intergenic |
| GAGGAAGTTTCTATGGTTCA+TGG | 0.446828 | 2.4:+23415240 | MS.gene96009:CDS |
| AGACTTCTTCTAAATATCCT+TGG | 0.453758 | 2.4:+23415378 | MS.gene96009:CDS |
| CAAGAGTGGGAGAACAAGTT+AGG | 0.459056 | 2.4:+23414915 | MS.gene96009:CDS |
| AGGACATTGTTCAAGATGGT+TGG | 0.459205 | 2.4:-23416042 | None:intergenic |
| CACAATTATACACAAGTGTA+TGG | 0.464120 | 2.4:+23415197 | MS.gene96009:CDS |
| TGCACATAATTTCAAACAAA+GGG | 0.466961 | 2.4:-23408559 | None:intergenic |
| TACCTTCTCTATCGTGCTCC+AGG | 0.468070 | 2.4:+23416134 | MS.gene96009:CDS |
| ATATCAGCCATTGGAGATCC+TGG | 0.469372 | 2.4:+23408639 | MS.gene96009:CDS |
| GTATAATTGTGGTACATTGA+TGG | 0.474403 | 2.4:-23415185 | None:intergenic |
| GGATTGGTGATCCAAGAACT+TGG | 0.474749 | 2.4:+23416291 | MS.gene96009:CDS |
| CCTTATCATACCTTCTCAAA+TGG | 0.478700 | 2.4:+23416065 | MS.gene96009:CDS |
| GATGCTACTACAGGATTCTC+TGG | 0.483171 | 2.4:+23415422 | MS.gene96009:CDS |
| CCTTGGAAAGAGTTATACTT+AGG | 0.486605 | 2.4:+23414993 | MS.gene96009:CDS |
| CTTAGATCAGATGCTACTAC+AGG | 0.490538 | 2.4:+23415413 | MS.gene96009:CDS |
| TCCAGGAAATGCAATGTACT+TGG | 0.491818 | 2.4:+23416151 | MS.gene96009:CDS |
| GTAGGCATCATAGGGGAACT+TGG | 0.493859 | 2.4:-23416114 | None:intergenic |
| TGTAACCAGATACAGTGAAA+TGG | 0.494064 | 2.4:+23415986 | MS.gene96009:CDS |
| TACTCACCCCAAACCGGGTG+CGG | 0.494068 | 2.4:-23416239 | None:intergenic |
| TGGGAGAAGGAAGTTGGTAA+TGG | 0.497371 | 2.4:+23415329 | MS.gene96009:CDS |
| CACTTGATATCAAGAAAGGA+GGG | 0.497483 | 2.4:+23415877 | MS.gene96009:CDS |
| TAGAGAAGGTAGGCATCATA+GGG | 0.498127 | 2.4:-23416122 | None:intergenic |
| TGGAATCAATGCAATGAGGT+TGG | 0.500632 | 2.4:+23408699 | MS.gene96009:CDS |
| TTCTTATTATTCAGTGACTT+GGG | 0.502015 | 2.4:+23415310 | MS.gene96009:CDS |
| TCATGGACATGGGAAGTTGT+TGG | 0.502759 | 2.4:+23415922 | MS.gene96009:CDS |
| GGAGTATCTCTTGAGGCTGC+GGG | 0.502864 | 2.4:-23416208 | None:intergenic |
| TGGAGTATCTCTTGAGGCTG+CGG | 0.503368 | 2.4:-23416209 | None:intergenic |
| AGGAAGTTTCTATGGTTCAT+GGG | 0.503598 | 2.4:+23415241 | MS.gene96009:CDS |
| ACCCGGTTTGGGGTGAGTAC+GGG | 0.508557 | 2.4:+23416243 | MS.gene96009:CDS |
| ACAATGGAAAGCCGTGCGAC+GGG | 0.508747 | 2.4:+23415949 | MS.gene96009:CDS |
| GTGACTTGGGAGAAGGAAGT+TGG | 0.509085 | 2.4:+23415323 | MS.gene96009:CDS |
| AGAACTTGGGAGCTTGATGT+TGG | 0.511845 | 2.4:+23416305 | MS.gene96009:CDS |
| CCAATTCTACCTCATGGACA+TGG | 0.515374 | 2.4:+23415911 | MS.gene96009:CDS |
| TTACTCCAATAATGGAGCTA+TGG | 0.519160 | 2.4:+23408529 | None:intergenic |
| CAACAAAGAAAGGTGAAGGT+TGG | 0.528934 | 2.4:+23416270 | MS.gene96009:CDS |
| TTCACACTTGATATCAAGAA+AGG | 0.531105 | 2.4:+23415873 | MS.gene96009:CDS |
| TGGAAAAGAAGCACCAAACA+TGG | 0.533992 | 2.4:+23408719 | MS.gene96009:CDS |
| AAGGAGGACATTGTTCAAGA+TGG | 0.534215 | 2.4:-23416046 | None:intergenic |
| CCATTTGAGAAGGTATGATA+AGG | 0.536448 | 2.4:-23416065 | None:intergenic |
| CCTAAGTATAACTCTTTCCA+AGG | 0.538349 | 2.4:-23414993 | None:intergenic |
| TACGGGTATCCAACAAAGAA+AGG | 0.538937 | 2.4:+23416260 | MS.gene96009:CDS |
| CAAGATTATATATCAGCCAT+TGG | 0.539164 | 2.4:+23408630 | MS.gene96009:CDS |
| TTATTCAGTGACTTGGGAGA+AGG | 0.541291 | 2.4:+23415316 | MS.gene96009:CDS |
| TGGATGATAATGCTCAAAAG+TGG | 0.542138 | 2.4:+23415059 | MS.gene96009:CDS |
| AAGAAAGGTGAAGGTTGGAT+TGG | 0.543649 | 2.4:+23416275 | MS.gene96009:CDS |
| AAAGAGCCAATTCTACCTCA+TGG | 0.544588 | 2.4:+23415905 | MS.gene96009:CDS |
| CATACACTTGTGTATAATTG+TGG | 0.547171 | 2.4:-23415196 | None:intergenic |
| ACCCGTACTCACCCCAAACC+GGG | 0.554291 | 2.4:-23416244 | None:intergenic |
| AACAATGGAAAGCCGTGCGA+CGG | 0.555621 | 2.4:+23415948 | MS.gene96009:CDS |
| AAACATGGGAAGTCCAAGAA+TGG | 0.564081 | 2.4:+23408734 | MS.gene96009:CDS |
| CGTCTCTGTTCGATGAACTC+GGG | 0.576767 | 2.4:-23416090 | None:intergenic |
| TGAGAGTTGCTATTGAGTCA+TGG | 0.577116 | 2.4:+23408679 | MS.gene96009:CDS |
| TACGGATCAGATGGTATCAC+CGG | 0.581588 | 2.4:-23416179 | None:intergenic |
| AACTCGGGTGCCATTTGAGA+AGG | 0.584910 | 2.4:-23416075 | None:intergenic |
| GATTGGTGATCCAAGAACTT+GGG | 0.585095 | 2.4:+23416292 | MS.gene96009:CDS |
| AATGCTCAAAAGTGGAAACA+TGG | 0.590612 | 2.4:+23415067 | MS.gene96009:CDS |
| ATGCAGACATGTATGCACCT+TGG | 0.592365 | 2.4:+23414976 | MS.gene96009:CDS |
| TAATTCACAAGGTGCAAGAG+TGG | 0.592701 | 2.4:+23414901 | MS.gene96009:CDS |
| TTTCATACCAGGATCTCCAA+TGG | 0.594452 | 2.4:-23408646 | None:intergenic |
| ATGCACATAATTTCAAACAA+AGG | 0.594624 | 2.4:-23408560 | None:intergenic |
| GGAAGTTGTTGGAAGAACAA+TGG | 0.597086 | 2.4:+23415933 | MS.gene96009:CDS |
| GTTGAAAAGAAGATTATGAG+AGG | 0.603083 | 2.4:+23415221 | MS.gene96009:CDS |
| AGATGGTTGGGTTTGCACGA+CGG | 0.607042 | 2.4:-23416029 | None:intergenic |
| AAGCAAGGAAAATCATGTTG+TGG | 0.610626 | 2.4:-23415140 | None:intergenic |
| TTTGAGAAGGTATGATAAGG+AGG | 0.612656 | 2.4:-23416062 | None:intergenic |
| GATCCTGGTATGAAAAGAGA+TGG | 0.612704 | 2.4:+23408654 | MS.gene96009:CDS |
| AATTCACAAGGTGCAAGAGT+GGG | 0.616537 | 2.4:+23414902 | MS.gene96009:CDS |
| CAGTGAAATGGACATAAACC+CGG | 0.617735 | 2.4:+23415998 | MS.gene96009:CDS |
| TATCCAACAAAGAAAGGTGA+AGG | 0.620362 | 2.4:+23416266 | MS.gene96009:CDS |
| ACACTTGATATCAAGAAAGG+AGG | 0.620950 | 2.4:+23415876 | MS.gene96009:CDS |
| CTTGATATCAAGAAAGGAGG+GGG | 0.623013 | 2.4:+23415879 | MS.gene96009:CDS |
| ATTATCATCCAAAATTGCCA+TGG | 0.624144 | 2.4:-23415047 | None:intergenic |
| CAATTCTACCTCATGGACAT+GGG | 0.628930 | 2.4:+23415912 | MS.gene96009:CDS |
| AAAATTTGGAGTATCTCTTG+AGG | 0.629876 | 2.4:-23416215 | None:intergenic |
| CAATGGAAAGCCGTGCGACG+GGG | 0.635908 | 2.4:+23415950 | MS.gene96009:CDS |
| GGGTTGCTATACGGATCAGA+TGG | 0.640280 | 2.4:-23416188 | None:intergenic |
| GGAAAAGAAGCACCAAACAT+GGG | 0.648825 | 2.4:+23408720 | MS.gene96009:CDS |
| ACTTGATATCAAGAAAGGAG+GGG | 0.653164 | 2.4:+23415878 | MS.gene96009:CDS |
| GATGTGACATCCCCGTCGCA+CGG | 0.655142 | 2.4:-23415960 | None:intergenic |
| TTCCTGGAGCACGATAGAGA+AGG | 0.658420 | 2.4:-23416136 | None:intergenic |
| CCGAGTTCATCGAACAGAGA+CGG | 0.661775 | 2.4:+23416091 | MS.gene96009:CDS |
| CTAAGATAAAGCATCAACCA+AGG | 0.667233 | 2.4:-23415395 | None:intergenic |
| TGGAGCACGATAGAGAAGGT+AGG | 0.668058 | 2.4:-23416132 | None:intergenic |
| ATACACCCTTCACCAAAGCA+AGG | 0.670915 | 2.4:-23415155 | None:intergenic |
| GGTTACCATTATGAAACTAG+AGG | 0.672011 | 2.4:+23415446 | MS.gene96009:CDS |
| AAAGGTGAAATTAATTCACA+AGG | 0.673584 | 2.4:+23414890 | MS.gene96009:CDS |
| AACAACTTCCCATGTCCATG+AGG | 0.684995 | 2.4:-23415920 | None:intergenic |
| GTGAACCTTACCTTAAAATG+TGG | 0.685307 | 2.4:-23415855 | None:intergenic |
| GCTACTACAGGATTCTCTGG+TGG | 0.687235 | 2.4:+23415425 | MS.gene96009:CDS |
| AGAGAAGGTAGGCATCATAG+GGG | 0.755842 | 2.4:-23416121 | None:intergenic |
| GTCATGGAATCAATGCAATG+AGG | 0.758170 | 2.4:+23408695 | MS.gene96009:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 23408540 | 23416379 | 23408540 | ID=MS.gene96009 |
| chr2.4 | mRNA | 23408540 | 23416379 | 23408540 | ID=MS.gene96009.t1;Parent=MS.gene96009 |
| chr2.4 | exon | 23408540 | 23408792 | 23408540 | ID=MS.gene96009.t1.exon1;Parent=MS.gene96009.t1 |
| chr2.4 | CDS | 23408540 | 23408792 | 23408540 | ID=cds.MS.gene96009.t1;Parent=MS.gene96009.t1 |
| chr2.4 | exon | 23414889 | 23415481 | 23414889 | ID=MS.gene96009.t1.exon2;Parent=MS.gene96009.t1 |
| chr2.4 | CDS | 23414889 | 23415481 | 23414889 | ID=cds.MS.gene96009.t1;Parent=MS.gene96009.t1 |
| chr2.4 | exon | 23415843 | 23416379 | 23415843 | ID=MS.gene96009.t1.exon3;Parent=MS.gene96009.t1 |
| chr2.4 | CDS | 23415843 | 23416379 | 23415843 | ID=cds.MS.gene96009.t1;Parent=MS.gene96009.t1 |
| Gene Sequence |
| Protein sequence |