Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96779.t1 | AES89947.1 | 97.8 | 537 | 12 | 0 | 3 | 539 | 4 | 540 | 2.40E-307 | 1063.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96779.t1 | Q75BF1 | 41.1 | 73 | 42 | 1 | 323 | 394 | 336 | 408 | 3.3e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96779.t1 | G7JG98 | 97.8 | 537 | 12 | 0 | 3 | 539 | 4 | 540 | 1.8e-307 | 1063.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene96779.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene96779 | 0.806114 | 9.63E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene96779 | 0.811859 | 5.67E-51 | -1.69E-46 |
| MS.gene050297 | MS.gene96779 | 0.814256 | 1.69E-51 | -1.69E-46 |
| MS.gene050648 | MS.gene96779 | 0.823374 | 1.43E-53 | -1.69E-46 |
| MS.gene051067 | MS.gene96779 | 0.811669 | 6.24E-51 | -1.69E-46 |
| MS.gene051263 | MS.gene96779 | 0.808494 | 3.01E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene96779 | 0.803248 | 3.82E-49 | -1.69E-46 |
| MS.gene058197 | MS.gene96779 | 0.804551 | 2.05E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene96779 | 0.837817 | 4.15E-57 | -1.69E-46 |
| MS.gene06057 | MS.gene96779 | 0.816122 | 6.51E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96779.t1 | MTR_4g082140 | 97.584 | 538 | 13 | 0 | 2 | 539 | 3 | 540 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96779.t1 | AT1G26760 | 58.254 | 527 | 215 | 3 | 10 | 532 | 17 | 542 | 0.0 | 602 |
Find 133 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAGCTTGCTGAATTTAT+TGG | 0.149845 | 4.3:+28264033 | MS.gene96779:CDS |
| TGCGATGGAGAGGAGTATTT+TGG | 0.176280 | 4.3:+28264152 | MS.gene96779:CDS |
| GGTTAAGTTGTTGGCTATAT+TGG | 0.205927 | 4.3:+28264392 | MS.gene96779:CDS |
| TGCATGTACTCTTCTTCTTC+TGG | 0.230924 | 4.3:-28263538 | None:intergenic |
| TGATGCTGGGTCTTTGATTT+TGG | 0.235068 | 4.3:+28264116 | MS.gene96779:CDS |
| TTGTCTTAATAGATATTCTA+TGG | 0.274950 | 4.3:+28263849 | MS.gene96779:CDS |
| TGGCAGTGGTGGTGGAAATT+TGG | 0.287633 | 4.3:+28265019 | MS.gene96779:CDS |
| TCGCTATATTCGGAGGCTTA+TGG | 0.291838 | 4.3:+28264861 | MS.gene96779:CDS |
| AACAGCTATGCTTGAGAATC+AGG | 0.300867 | 4.3:+28263888 | MS.gene96779:CDS |
| ATGCGAGGCGGTTGCATGTT+GGG | 0.304086 | 4.3:+28264532 | MS.gene96779:CDS |
| TCTGCATTTCCCTCTGCAAC+CGG | 0.305823 | 4.3:+28263710 | MS.gene96779:CDS |
| GATACTTGAGAGCTTCATTT+TGG | 0.314098 | 4.3:+28264838 | MS.gene96779:CDS |
| TTGATTGGTAAATTGTCAAT+TGG | 0.316106 | 4.3:+28264273 | MS.gene96779:CDS |
| TGATTGGTAAATTGTCAATT+GGG | 0.339421 | 4.3:+28264274 | MS.gene96779:CDS |
| AATCTCCTTCACTTCTTGCT+TGG | 0.343179 | 4.3:-28264721 | None:intergenic |
| GATGAAAAGCTCTGTTGCTT+TGG | 0.360086 | 4.3:-28263572 | None:intergenic |
| TGGTGAAGTGGGTTGGGGTG+TGG | 0.372932 | 4.3:-28263667 | None:intergenic |
| ATCGATGGATCTTTCTGATT+GGG | 0.373282 | 4.3:+28263984 | MS.gene96779:CDS |
| TTTGAATGGGTTTCCTGGTA+AGG | 0.385478 | 4.3:+28264008 | MS.gene96779:CDS |
| CGAGGATGTTGAGATTGATA+TGG | 0.387279 | 4.3:+28264371 | MS.gene96779:CDS |
| TGCTGTTGAGATTAGAAAAT+CGG | 0.393927 | 4.3:+28264056 | MS.gene96779:CDS |
| GATCGATGGATCTTTCTGAT+TGG | 0.394895 | 4.3:+28263983 | MS.gene96779:CDS |
| TTTGATGGTGAAGTGGGTTG+GGG | 0.398288 | 4.3:-28263672 | None:intergenic |
| ACATGCAACCGCCTCGCATT+AGG | 0.405164 | 4.3:-28264528 | None:intergenic |
| CGGAGAGGTGTATGAAAAGA+TGG | 0.420346 | 4.3:+28264886 | MS.gene96779:CDS |
| CTCTTATTCAAGGGAGAAAG+TGG | 0.422699 | 4.3:-28264624 | None:intergenic |
| AAGAGTGATGAAATGGGAAT+AGG | 0.425368 | 4.3:-28263623 | None:intergenic |
| TACCTGTTGTTGATCTGTTT+AGG | 0.433162 | 4.3:+28264319 | MS.gene96779:CDS |
| TTTGAGTGAGGATACTCAAT+TGG | 0.433474 | 4.3:+28264185 | MS.gene96779:CDS |
| AGGAAGAATAATGATTGTTA+TGG | 0.434601 | 4.3:+28264459 | MS.gene96779:CDS |
| AATGCGAGGCGGTTGCATGT+TGG | 0.436488 | 4.3:+28264531 | MS.gene96779:CDS |
| TTCAAGAGTCTTGTTTGTAA+AGG | 0.438253 | 4.3:+28263814 | MS.gene96779:CDS |
| TGGTTTGGTGTATAAGTTTG+AGG | 0.439146 | 4.3:+28264776 | MS.gene96779:CDS |
| TTCACCTCACCAACATTCTC+AGG | 0.445472 | 4.3:-28264342 | None:intergenic |
| GTGTAAGAGGTGTAAGTTTG+AGG | 0.445952 | 4.3:+28264683 | MS.gene96779:CDS |
| ATTGTTATGGTGTTGGGCTA+TGG | 0.447041 | 4.3:+28264472 | MS.gene96779:CDS |
| CAGGGTGCTTAAGATCTTGA+TGG | 0.447688 | 4.3:+28264974 | MS.gene96779:CDS |
| CACAAGACTAGGAATTTGAT+TGG | 0.450988 | 4.3:+28264258 | MS.gene96779:CDS |
| AGGGATGGATGTAGGTGGTT+TGG | 0.454334 | 4.3:+28264761 | MS.gene96779:CDS |
| GGAACTGTGAAATGCTTGTT+GGG | 0.457834 | 4.3:+28263917 | MS.gene96779:CDS |
| ATTGAGATTGGTATTGAAAG+AGG | 0.460526 | 4.3:+28264741 | MS.gene96779:CDS |
| GGGTGCAAAGAGTGATGAAA+TGG | 0.462864 | 4.3:-28263630 | None:intergenic |
| AAAAGAATTGTCTGTGACAT+GGG | 0.463603 | 4.3:+28264647 | MS.gene96779:CDS |
| GATTGATATGGTTAAGTTGT+TGG | 0.464137 | 4.3:+28264383 | MS.gene96779:CDS |
| ATGTAGTGGGAGGTGATCAC+AGG | 0.469829 | 4.3:+28264955 | MS.gene96779:CDS |
| AAAGGCGGTGGCAGTGGTGG+TGG | 0.469890 | 4.3:+28265011 | MS.gene96779:CDS |
| GAAGTGAAGGAGATTGAGAT+TGG | 0.472610 | 4.3:+28264729 | MS.gene96779:CDS |
| TGCGAGGCGGTTGCATGTTG+GGG | 0.475570 | 4.3:+28264533 | MS.gene96779:CDS |
| ATAATGATTGTTATGGTGTT+GGG | 0.477794 | 4.3:+28264466 | MS.gene96779:CDS |
| TGTAAGAGGTGTAAGTTTGA+GGG | 0.479731 | 4.3:+28264684 | MS.gene96779:CDS |
| AAGTTAGCAAGAGAAGTGTA+TGG | 0.484594 | 4.3:+28265059 | MS.gene96779:CDS |
| GGGAAGGAGAATTCCGGCAT+TGG | 0.484683 | 4.3:+28264908 | MS.gene96779:CDS |
| CACGAGTGATTTATAAATGA+AGG | 0.487421 | 4.3:-28264501 | None:intergenic |
| GAAATGGGAATAGGTTTCAA+TGG | 0.490510 | 4.3:-28263614 | None:intergenic |
| GGAATAGGTTTCAATGGCAT+TGG | 0.490849 | 4.3:-28263608 | None:intergenic |
| AATAATGATTGTTATGGTGT+TGG | 0.491400 | 4.3:+28264465 | MS.gene96779:CDS |
| AAGAGAAAAGGCGGTGGCAG+TGG | 0.492447 | 4.3:+28265005 | MS.gene96779:CDS |
| GGGAACTGTGAAATGCTTGT+TGG | 0.492814 | 4.3:+28263916 | MS.gene96779:CDS |
| AAGAGAAGTGTATGGGAAGG+TGG | 0.498751 | 4.3:+28265067 | MS.gene96779:CDS |
| GGATTCATTGCAAGTGTAAG+AGG | 0.499575 | 4.3:+28264670 | MS.gene96779:CDS |
| GCTCTGTTGCTTTGGATCTG+AGG | 0.500867 | 4.3:-28263564 | None:intergenic |
| TTGAGATTGGTATTGAAAGA+GGG | 0.501722 | 4.3:+28264742 | MS.gene96779:CDS |
| TTGAGGAACAAATGAAGAGA+TGG | 0.502193 | 4.3:+28264793 | MS.gene96779:CDS |
| GCTTCAAGAGATTTGAAAGC+TGG | 0.503483 | 4.3:+28264573 | MS.gene96779:CDS |
| ATGGAGGAATTGAAGAGAAA+AGG | 0.506698 | 4.3:+28264993 | MS.gene96779:CDS |
| AAGATGGGGAAGGAGAATTC+CGG | 0.510697 | 4.3:+28264902 | MS.gene96779:CDS |
| GGAGAGGTGTATGAAAAGAT+GGG | 0.512728 | 4.3:+28264887 | MS.gene96779:CDS |
| ATTGTCAATTGGGGAAAATG+AGG | 0.513846 | 4.3:+28264284 | MS.gene96779:CDS |
| AGGATACTCAATTGGTTATG+TGG | 0.519773 | 4.3:+28264193 | MS.gene96779:CDS |
| ATATTCGGAGGCTTATGGTT+CGG | 0.520594 | 4.3:+28264866 | MS.gene96779:CDS |
| TTGCTTCGGCCCGGTTGCAG+AGG | 0.520596 | 4.3:-28263720 | None:intergenic |
| GCAAGCTCAGGAGCCTTACC+AGG | 0.521541 | 4.3:-28264021 | None:intergenic |
| GGTTACTAAGGCGGTTGCGA+TGG | 0.521998 | 4.3:+28264137 | MS.gene96779:CDS |
| ATGAAGAGATGGAAGGTGAG+GGG | 0.523693 | 4.3:+28264804 | MS.gene96779:CDS |
| GGCCTAAACAGATCAACAAC+AGG | 0.525052 | 4.3:-28264321 | None:intergenic |
| CCAATAAATTCAGCAAGCTC+AGG | 0.530739 | 4.3:-28264033 | None:intergenic |
| CTGCATTTCCCTCTGCAACC+GGG | 0.537433 | 4.3:+28263711 | MS.gene96779:CDS |
| AAAATCGGAGATTAGTGGGC+GGG | 0.537459 | 4.3:+28264071 | MS.gene96779:CDS |
| GCTATGAAGAATGTTGATGC+TGG | 0.538553 | 4.3:+28264102 | MS.gene96779:CDS |
| AAATCGGAGATTAGTGGGCG+GGG | 0.539278 | 4.3:+28264072 | MS.gene96779:CDS |
| GATTGGTAAATTGTCAATTG+GGG | 0.539434 | 4.3:+28264275 | MS.gene96779:CDS |
| CTAAAGCAGAGTTGAATTCG+CGG | 0.539490 | 4.3:-28263753 | None:intergenic |
| AGCAAGAGAAGTGTATGGGA+AGG | 0.541807 | 4.3:+28265064 | MS.gene96779:CDS |
| TGATAGCATTACAGATGTAG+TGG | 0.547590 | 4.3:+28264941 | MS.gene96779:CDS |
| TTTATCGAGGACTGGATCGA+TGG | 0.547984 | 4.3:+28263969 | MS.gene96779:CDS |
| TGCTTCGGCCCGGTTGCAGA+GGG | 0.548209 | 4.3:-28263719 | None:intergenic |
| TCAACCACTGCATCCAATGC+CGG | 0.554486 | 4.3:-28264921 | None:intergenic |
| TGGGGTGTGGAAGAGAAAGA+TGG | 0.555098 | 4.3:-28263654 | None:intergenic |
| AGAAAAGGCGGTGGCAGTGG+TGG | 0.555153 | 4.3:+28265008 | MS.gene96779:CDS |
| ATTAGAAAATCGGAGATTAG+TGG | 0.560856 | 4.3:+28264066 | MS.gene96779:CDS |
| AATGAAGAGATGGAAGGTGA+GGG | 0.561622 | 4.3:+28264803 | MS.gene96779:CDS |
| ATTGAAAGAGGGATGGATGT+AGG | 0.565884 | 4.3:+28264753 | MS.gene96779:CDS |
| ATCGGAGATTAGTGGGCGGG+GGG | 0.568384 | 4.3:+28264074 | MS.gene96779:CDS |
| TGAAGAGATGGAAGGTGAGG+GGG | 0.569302 | 4.3:+28264805 | MS.gene96779:CDS |
| GATTGGTATTGAAAGAGGGA+TGG | 0.569642 | 4.3:+28264746 | MS.gene96779:CDS |
| CTATGAAGAATGTTGATGCT+GGG | 0.576287 | 4.3:+28264103 | MS.gene96779:CDS |
| AGTTAGCAAGAGAAGTGTAT+GGG | 0.577336 | 4.3:+28265060 | MS.gene96779:CDS |
| CTGTTTAGGCCTGAGAATGT+TGG | 0.579614 | 4.3:+28264333 | MS.gene96779:CDS |
| GATAGCATTACAGATGTAGT+GGG | 0.579758 | 4.3:+28264942 | MS.gene96779:CDS |
| TTAGAAAATCGGAGATTAGT+GGG | 0.580312 | 4.3:+28264067 | MS.gene96779:CDS |
| AAATGAAGAGATGGAAGGTG+AGG | 0.581313 | 4.3:+28264802 | MS.gene96779:CDS |
| TGGTGGTGGAAATTTGGAGA+TGG | 0.584813 | 4.3:+28265025 | MS.gene96779:CDS |
| GGTGTATGAAAAGATGGGGA+AGG | 0.584919 | 4.3:+28264892 | MS.gene96779:CDS |
| AATCGGAGATTAGTGGGCGG+GGG | 0.588641 | 4.3:+28264073 | MS.gene96779:CDS |
| GTAAGAGGTGTAAGTTTGAG+GGG | 0.591209 | 4.3:+28264685 | MS.gene96779:CDS |
| GTTATCCAAGCAAGAAGTGA+AGG | 0.591908 | 4.3:+28264716 | MS.gene96779:CDS |
| AATTCCGGCATTGGATGCAG+TGG | 0.593389 | 4.3:+28264917 | MS.gene96779:CDS |
| GAAAGAGGGATGGATGTAGG+TGG | 0.596582 | 4.3:+28264756 | MS.gene96779:CDS |
| GGTGCAAAGAGTGATGAAAT+GGG | 0.597081 | 4.3:-28263629 | None:intergenic |
| TGCTTGAGAATCAGGCAAGT+GGG | 0.601634 | 4.3:+28263896 | MS.gene96779:CDS |
| GGGAGGTAAAGATTTGAGTG+AGG | 0.601669 | 4.3:+28264173 | MS.gene96779:CDS |
| AAAGAATTGTCTGTGACATG+GGG | 0.611357 | 4.3:+28264648 | MS.gene96779:CDS |
| TAAGAGGTGTAAGTTTGAGG+GGG | 0.611503 | 4.3:+28264686 | MS.gene96779:CDS |
| GAAAAGAATTGTCTGTGACA+TGG | 0.612754 | 4.3:+28264646 | MS.gene96779:CDS |
| CTAAGGCGGTTGCGATGGAG+AGG | 0.616650 | 4.3:+28264142 | MS.gene96779:CDS |
| ATGCTTGAGAATCAGGCAAG+TGG | 0.617092 | 4.3:+28263895 | MS.gene96779:CDS |
| GGTGTGGAAGAGAAAGATGG+TGG | 0.630801 | 4.3:-28263651 | None:intergenic |
| CGGAGGCTTATGGTTCGGAG+AGG | 0.648399 | 4.3:+28264871 | MS.gene96779:CDS |
| ACTCGTGTTGTCCTAATGCG+AGG | 0.649170 | 4.3:+28264517 | MS.gene96779:CDS |
| GAGGAATTGAAGAGAAAAGG+CGG | 0.653690 | 4.3:+28264996 | MS.gene96779:CDS |
| GGAACAAATGAAGAGATGGA+AGG | 0.654855 | 4.3:+28264797 | MS.gene96779:CDS |
| GAGAGGTGTATGAAAAGATG+GGG | 0.655954 | 4.3:+28264888 | MS.gene96779:CDS |
| TGTAGTGGGAGGTGATCACA+GGG | 0.656015 | 4.3:+28264956 | MS.gene96779:CDS |
| GTGTGGAAGAGAAAGATGGT+GGG | 0.659362 | 4.3:-28263650 | None:intergenic |
| GGTGCTTAAGATCTTGATGG+AGG | 0.683661 | 4.3:+28264977 | MS.gene96779:CDS |
| AGCATTACAGATGTAGTGGG+AGG | 0.687102 | 4.3:+28264945 | MS.gene96779:CDS |
| TAGGCCTGAGAATGTTGGTG+AGG | 0.688195 | 4.3:+28264338 | MS.gene96779:CDS |
| AAGAATTGTCTGTGACATGG+GGG | 0.694508 | 4.3:+28264649 | MS.gene96779:CDS |
| GAATTGAAGAGAAAAGGCGG+TGG | 0.699050 | 4.3:+28264999 | MS.gene96779:CDS |
| CGTGTTGTCCTAATGCGAGG+CGG | 0.716928 | 4.3:+28264520 | MS.gene96779:CDS |
| GAAAATCGGAGATTAGTGGG+CGG | 0.725116 | 4.3:+28264070 | MS.gene96779:CDS |
| GGATGTTAATTCTCTCACTG+AGG | 0.729479 | 4.3:+28264413 | MS.gene96779:CDS |
| TGGTGAGGTGAATTCAAACG+AGG | 0.805283 | 4.3:+28264353 | MS.gene96779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCTTAATAGATATTCTA+TGG | + | chr4.3:28263849-28263868 | MS.gene96779:CDS | 20.0% |
| !!! | AAAAGTTTGAATTTTTATCG+AGG | + | chr4.3:28263956-28263975 | MS.gene96779:CDS | 20.0% |
| !!! | AATTCTTTTCTCTTATTCAA+GGG | - | chr4.3:28264636-28264655 | None:intergenic | 20.0% |
| ! | AATAATGATTGTTATGGTGT+TGG | + | chr4.3:28264465-28264484 | MS.gene96779:CDS | 25.0% |
| ! | AGGAAGAATAATGATTGTTA+TGG | + | chr4.3:28264459-28264478 | MS.gene96779:CDS | 25.0% |
| ! | ATAATGATTGTTATGGTGTT+GGG | + | chr4.3:28264466-28264485 | MS.gene96779:CDS | 25.0% |
| ! | TGATTGGTAAATTGTCAATT+GGG | + | chr4.3:28264274-28264293 | MS.gene96779:CDS | 25.0% |
| ! | TTGATTGGTAAATTGTCAAT+TGG | + | chr4.3:28264273-28264292 | MS.gene96779:CDS | 25.0% |
| !! | CAATTCTTTTCTCTTATTCA+AGG | - | chr4.3:28264637-28264656 | None:intergenic | 25.0% |
| AAAAGAATTGTCTGTGACAT+GGG | + | chr4.3:28264647-28264666 | MS.gene96779:CDS | 30.0% | |
| ATTAGAAAATCGGAGATTAG+TGG | + | chr4.3:28264066-28264085 | MS.gene96779:CDS | 30.0% | |
| CACGAGTGATTTATAAATGA+AGG | - | chr4.3:28264504-28264523 | None:intergenic | 30.0% | |
| GATTGGTAAATTGTCAATTG+GGG | + | chr4.3:28264275-28264294 | MS.gene96779:CDS | 30.0% | |
| TGCTGTTGAGATTAGAAAAT+CGG | + | chr4.3:28264056-28264075 | MS.gene96779:CDS | 30.0% | |
| TTAGAAAATCGGAGATTAGT+GGG | + | chr4.3:28264067-28264086 | MS.gene96779:CDS | 30.0% | |
| ! | ATTGAGATTGGTATTGAAAG+AGG | + | chr4.3:28264741-28264760 | MS.gene96779:CDS | 30.0% |
| ! | GATTGATATGGTTAAGTTGT+TGG | + | chr4.3:28264383-28264402 | MS.gene96779:CDS | 30.0% |
| ! | GTGATTTATGAAGCTTTTGA+TGG | - | chr4.3:28263690-28263709 | None:intergenic | 30.0% |
| ! | TTGAGATTGGTATTGAAAGA+GGG | + | chr4.3:28264742-28264761 | MS.gene96779:CDS | 30.0% |
| ! | TTTGAATTTTTATCGAGGAC+TGG | + | chr4.3:28263961-28263980 | MS.gene96779:CDS | 30.0% |
| !! | TTAAAAAGTGTCACAAGACT+AGG | + | chr4.3:28264247-28264266 | MS.gene96779:CDS | 30.0% |
| !! | TTCAAGAGTCTTGTTTGTAA+AGG | + | chr4.3:28263814-28263833 | MS.gene96779:CDS | 30.0% |
| !! | TTCATTTTGGTCGCTATATT+CGG | + | chr4.3:28264851-28264870 | MS.gene96779:CDS | 30.0% |
| !!! | GTCTTTGATTTTGGTTACTA+AGG | + | chr4.3:28264125-28264144 | MS.gene96779:CDS | 30.0% |
| !!! | TTTCTGATTGGGTTTTGAAT+GGG | + | chr4.3:28263995-28264014 | MS.gene96779:CDS | 30.0% |
| !!! | TTTGATTTTGGTTACTAAGG+CGG | + | chr4.3:28264128-28264147 | MS.gene96779:CDS | 30.0% |
| AAAGAATTGTCTGTGACATG+GGG | + | chr4.3:28264648-28264667 | MS.gene96779:CDS | 35.0% | |
| AAGAGTGATGAAATGGGAAT+AGG | - | chr4.3:28263626-28263645 | None:intergenic | 35.0% | |
| AGGATACTCAATTGGTTATG+TGG | + | chr4.3:28264193-28264212 | MS.gene96779:CDS | 35.0% | |
| ATCGATGGATCTTTCTGATT+GGG | + | chr4.3:28263984-28264003 | MS.gene96779:CDS | 35.0% | |
| ATGGAGGAATTGAAGAGAAA+AGG | + | chr4.3:28264993-28265012 | MS.gene96779:CDS | 35.0% | |
| ATTGTCAATTGGGGAAAATG+AGG | + | chr4.3:28264284-28264303 | MS.gene96779:CDS | 35.0% | |
| CACAAGACTAGGAATTTGAT+TGG | + | chr4.3:28264258-28264277 | MS.gene96779:CDS | 35.0% | |
| CTATGAAGAATGTTGATGCT+GGG | + | chr4.3:28264103-28264122 | MS.gene96779:CDS | 35.0% | |
| GAAAAGAATTGTCTGTGACA+TGG | + | chr4.3:28264646-28264665 | MS.gene96779:CDS | 35.0% | |
| GAAATGGGAATAGGTTTCAA+TGG | - | chr4.3:28263617-28263636 | None:intergenic | 35.0% | |
| GATAGCATTACAGATGTAGT+GGG | + | chr4.3:28264942-28264961 | MS.gene96779:CDS | 35.0% | |
| TACCTGTTGTTGATCTGTTT+AGG | + | chr4.3:28264319-28264338 | MS.gene96779:CDS | 35.0% | |
| TGATAGCATTACAGATGTAG+TGG | + | chr4.3:28264941-28264960 | MS.gene96779:CDS | 35.0% | |
| TTGAGGAACAAATGAAGAGA+TGG | + | chr4.3:28264793-28264812 | MS.gene96779:CDS | 35.0% | |
| TTTGAGTGAGGATACTCAAT+TGG | + | chr4.3:28264185-28264204 | MS.gene96779:CDS | 35.0% | |
| ! | AAGTTAGCAAGAGAAGTGTA+TGG | + | chr4.3:28265059-28265078 | MS.gene96779:CDS | 35.0% |
| ! | AGCTTTTCATCAGAGAAGAA+TGG | + | chr4.3:28263584-28263603 | MS.gene96779:CDS | 35.0% |
| ! | AGTTAGCAAGAGAAGTGTAT+GGG | + | chr4.3:28265060-28265079 | MS.gene96779:CDS | 35.0% |
| ! | CAGTTTCAGCTAATGTTTTG+AGG | + | chr4.3:28264439-28264458 | MS.gene96779:CDS | 35.0% |
| ! | GATACTTGAGAGCTTCATTT+TGG | + | chr4.3:28264838-28264857 | MS.gene96779:CDS | 35.0% |
| ! | GGTTAAGTTGTTGGCTATAT+TGG | + | chr4.3:28264392-28264411 | MS.gene96779:CDS | 35.0% |
| ! | TGTAAGAGGTGTAAGTTTGA+GGG | + | chr4.3:28264684-28264703 | MS.gene96779:CDS | 35.0% |
| !! | TGGTTTGGTGTATAAGTTTG+AGG | + | chr4.3:28264776-28264795 | MS.gene96779:CDS | 35.0% |
| !!! | CTTTCTGATTGGGTTTTGAA+TGG | + | chr4.3:28263994-28264013 | MS.gene96779:CDS | 35.0% |
| AAATGAAGAGATGGAAGGTG+AGG | + | chr4.3:28264802-28264821 | MS.gene96779:CDS | 40.0% | |
| AACAGCTATGCTTGAGAATC+AGG | + | chr4.3:28263888-28263907 | MS.gene96779:CDS | 40.0% | |
| AAGAATTGTCTGTGACATGG+GGG | + | chr4.3:28264649-28264668 | MS.gene96779:CDS | 40.0% | |
| AATCTCCTTCACTTCTTGCT+TGG | - | chr4.3:28264724-28264743 | None:intergenic | 40.0% | |
| AATGAAGAGATGGAAGGTGA+GGG | + | chr4.3:28264803-28264822 | MS.gene96779:CDS | 40.0% | |
| ATATTCGGAGGCTTATGGTT+CGG | + | chr4.3:28264866-28264885 | MS.gene96779:CDS | 40.0% | |
| ATTGAAAGAGGGATGGATGT+AGG | + | chr4.3:28264753-28264772 | MS.gene96779:CDS | 40.0% | |
| CCAATAAATTCAGCAAGCTC+AGG | - | chr4.3:28264036-28264055 | None:intergenic | 40.0% | |
| CGAGGATGTTGAGATTGATA+TGG | + | chr4.3:28264371-28264390 | MS.gene96779:CDS | 40.0% | |
| CTAAAGCAGAGTTGAATTCG+CGG | - | chr4.3:28263756-28263775 | None:intergenic | 40.0% | |
| CTCTTATTCAAGGGAGAAAG+TGG | - | chr4.3:28264627-28264646 | None:intergenic | 40.0% | |
| GAAGTGAAGGAGATTGAGAT+TGG | + | chr4.3:28264729-28264748 | MS.gene96779:CDS | 40.0% | |
| GAGGAATTGAAGAGAAAAGG+CGG | + | chr4.3:28264996-28265015 | MS.gene96779:CDS | 40.0% | |
| GATCGATGGATCTTTCTGAT+TGG | + | chr4.3:28263983-28264002 | MS.gene96779:CDS | 40.0% | |
| GCTATGAAGAATGTTGATGC+TGG | + | chr4.3:28264102-28264121 | MS.gene96779:CDS | 40.0% | |
| GCTTCAAGAGATTTGAAAGC+TGG | + | chr4.3:28264573-28264592 | MS.gene96779:CDS | 40.0% | |
| GGAACAAATGAAGAGATGGA+AGG | + | chr4.3:28264797-28264816 | MS.gene96779:CDS | 40.0% | |
| GGAACTGTGAAATGCTTGTT+GGG | + | chr4.3:28263917-28263936 | MS.gene96779:CDS | 40.0% | |
| GGAATAGGTTTCAATGGCAT+TGG | - | chr4.3:28263611-28263630 | None:intergenic | 40.0% | |
| GGATGTTAATTCTCTCACTG+AGG | + | chr4.3:28264413-28264432 | MS.gene96779:CDS | 40.0% | |
| GGATTCATTGCAAGTGTAAG+AGG | + | chr4.3:28264670-28264689 | MS.gene96779:CDS | 40.0% | |
| GGTGCAAAGAGTGATGAAAT+GGG | - | chr4.3:28263632-28263651 | None:intergenic | 40.0% | |
| GTTATCCAAGCAAGAAGTGA+AGG | + | chr4.3:28264716-28264735 | MS.gene96779:CDS | 40.0% | |
| TGCATGTACTCTTCTTCTTC+TGG | - | chr4.3:28263541-28263560 | None:intergenic | 40.0% | |
| TGGTGAAAAAGCAAGCAATG+AGG | + | chr4.3:28265087-28265106 | MS.gene96779:CDS | 40.0% | |
| ! | ATTGTTATGGTGTTGGGCTA+TGG | + | chr4.3:28264472-28264491 | MS.gene96779:CDS | 40.0% |
| ! | GAGAGGTGTATGAAAAGATG+GGG | + | chr4.3:28264888-28264907 | MS.gene96779:CDS | 40.0% |
| ! | GATGAAAAGCTCTGTTGCTT+TGG | - | chr4.3:28263575-28263594 | None:intergenic | 40.0% |
| ! | GATTGGTATTGAAAGAGGGA+TGG | + | chr4.3:28264746-28264765 | MS.gene96779:CDS | 40.0% |
| ! | GGAGAGGTGTATGAAAAGAT+GGG | + | chr4.3:28264887-28264906 | MS.gene96779:CDS | 40.0% |
| ! | GTAAGAGGTGTAAGTTTGAG+GGG | + | chr4.3:28264685-28264704 | MS.gene96779:CDS | 40.0% |
| ! | GTGTAAGAGGTGTAAGTTTG+AGG | + | chr4.3:28264683-28264702 | MS.gene96779:CDS | 40.0% |
| ! | TAAGAGGTGTAAGTTTGAGG+GGG | + | chr4.3:28264686-28264705 | MS.gene96779:CDS | 40.0% |
| ! | TTTGAATGGGTTTCCTGGTA+AGG | + | chr4.3:28264008-28264027 | MS.gene96779:CDS | 40.0% |
| !! | ATTTTGGTCGCTATATTCGG+AGG | + | chr4.3:28264854-28264873 | MS.gene96779:CDS | 40.0% |
| !! | CCTGAGCTTGCTGAATTTAT+TGG | + | chr4.3:28264033-28264052 | MS.gene96779:CDS | 40.0% |
| !! | TGATGCTGGGTCTTTGATTT+TGG | + | chr4.3:28264116-28264135 | MS.gene96779:CDS | 40.0% |
| !!! | GAAGCTTTTGATGGTGAAGT+GGG | - | chr4.3:28263681-28263700 | None:intergenic | 40.0% |
| !!! | GCGGAGTTTTGATTTTGCTT+CGG | - | chr4.3:28263737-28263756 | None:intergenic | 40.0% |
| !!! | TGAAGCTTTTGATGGTGAAG+TGG | - | chr4.3:28263682-28263701 | None:intergenic | 40.0% |
| !!! | TTTTGATGGTGAAGTGGGTT+GGG | - | chr4.3:28263676-28263695 | None:intergenic | 40.0% |
| AAGATGGGGAAGGAGAATTC+CGG | + | chr4.3:28264902-28264921 | MS.gene96779:CDS | 45.0% | |
| ATGAAGAGATGGAAGGTGAG+GGG | + | chr4.3:28264804-28264823 | MS.gene96779:CDS | 45.0% | |
| ATGCTTGAGAATCAGGCAAG+TGG | + | chr4.3:28263895-28263914 | MS.gene96779:CDS | 45.0% | |
| CTGTTTAGGCCTGAGAATGT+TGG | + | chr4.3:28264333-28264352 | MS.gene96779:CDS | 45.0% | |
| GAAAATCGGAGATTAGTGGG+CGG | + | chr4.3:28264070-28264089 | MS.gene96779:CDS | 45.0% | |
| GAATTGAAGAGAAAAGGCGG+TGG | + | chr4.3:28264999-28265018 | MS.gene96779:CDS | 45.0% | |
| GGCCTAAACAGATCAACAAC+AGG | - | chr4.3:28264324-28264343 | None:intergenic | 45.0% | |
| GGGAACTGTGAAATGCTTGT+TGG | + | chr4.3:28263916-28263935 | MS.gene96779:CDS | 45.0% | |
| GGGAGGTAAAGATTTGAGTG+AGG | + | chr4.3:28264173-28264192 | MS.gene96779:CDS | 45.0% | |
| GGGTGCAAAGAGTGATGAAA+TGG | - | chr4.3:28263633-28263652 | None:intergenic | 45.0% | |
| GGTGCTTAAGATCTTGATGG+AGG | + | chr4.3:28264977-28264996 | MS.gene96779:CDS | 45.0% | |
| GGTGTATGAAAAGATGGGGA+AGG | + | chr4.3:28264892-28264911 | MS.gene96779:CDS | 45.0% | |
| GTGTGGAAGAGAAAGATGGT+GGG | - | chr4.3:28263653-28263672 | None:intergenic | 45.0% | |
| TCGCTATATTCGGAGGCTTA+TGG | + | chr4.3:28264861-28264880 | MS.gene96779:CDS | 45.0% | |
| TGCTTGAGAATCAGGCAAGT+GGG | + | chr4.3:28263896-28263915 | MS.gene96779:CDS | 45.0% | |
| TGGTGAGGTGAATTCAAACG+AGG | + | chr4.3:28264353-28264372 | MS.gene96779:CDS | 45.0% | |
| TTCACCTCACCAACATTCTC+AGG | - | chr4.3:28264345-28264364 | None:intergenic | 45.0% | |
| TTTATCGAGGACTGGATCGA+TGG | + | chr4.3:28263969-28263988 | MS.gene96779:CDS | 45.0% | |
| ! | AAAATCGGAGATTAGTGGGC+GGG | + | chr4.3:28264071-28264090 | MS.gene96779:CDS | 45.0% |
| ! | AAGAGAAGTGTATGGGAAGG+TGG | + | chr4.3:28265067-28265086 | MS.gene96779:CDS | 45.0% |
| ! | AGCAAGAGAAGTGTATGGGA+AGG | + | chr4.3:28265064-28265083 | MS.gene96779:CDS | 45.0% |
| ! | AGCATTACAGATGTAGTGGG+AGG | + | chr4.3:28264945-28264964 | MS.gene96779:CDS | 45.0% |
| ! | CAGGGTGCTTAAGATCTTGA+TGG | + | chr4.3:28264974-28264993 | MS.gene96779:CDS | 45.0% |
| ! | CGGAGAGGTGTATGAAAAGA+TGG | + | chr4.3:28264886-28264905 | MS.gene96779:CDS | 45.0% |
| !! | TGGTGGTGGAAATTTGGAGA+TGG | + | chr4.3:28265025-28265044 | MS.gene96779:CDS | 45.0% |
| !! | TTTGATGGTGAAGTGGGTTG+GGG | - | chr4.3:28263675-28263694 | None:intergenic | 45.0% |
| !!! | ATGGAGAGGAGTATTTTGGG+AGG | + | chr4.3:28264156-28264175 | MS.gene96779:CDS | 45.0% |
| !!! | CTTTTGATGGTGAAGTGGGT+TGG | - | chr4.3:28263677-28263696 | None:intergenic | 45.0% |
| !!! | GCGATGGAGAGGAGTATTTT+GGG | + | chr4.3:28264153-28264172 | MS.gene96779:CDS | 45.0% |
| !!! | GTTTTGATTTTGCTTCGGCC+CGG | - | chr4.3:28263732-28263751 | None:intergenic | 45.0% |
| !!! | TGCGATGGAGAGGAGTATTT+TGG | + | chr4.3:28264152-28264171 | MS.gene96779:CDS | 45.0% |
| !!! | TGGGTTTTGAATGGGTTTCC+TGG | + | chr4.3:28264003-28264022 | MS.gene96779:CDS | 45.0% |
| AAGGTGAGGGGGAAAGAGAA+GGG | + | chr4.3:28264816-28264835 | MS.gene96779:CDS | 50.0% | |
| ACTCGTGTTGTCCTAATGCG+AGG | + | chr4.3:28264517-28264536 | MS.gene96779:CDS | 50.0% | |
| AGGGATGGATGTAGGTGGTT+TGG | + | chr4.3:28264761-28264780 | MS.gene96779:CDS | 50.0% | |
| GAAAGAGGGATGGATGTAGG+TGG | + | chr4.3:28264756-28264775 | MS.gene96779:CDS | 50.0% | |
| GGTGTGGAAGAGAAAGATGG+TGG | - | chr4.3:28263654-28263673 | None:intergenic | 50.0% | |
| TAGGCCTGAGAATGTTGGTG+AGG | + | chr4.3:28264338-28264357 | MS.gene96779:CDS | 50.0% | |
| TCAACCACTGCATCCAATGC+CGG | - | chr4.3:28264924-28264943 | None:intergenic | 50.0% | |
| TCTGCATTTCCCTCTGCAAC+CGG | + | chr4.3:28263710-28263729 | MS.gene96779:CDS | 50.0% | |
| TGAAGAGATGGAAGGTGAGG+GGG | + | chr4.3:28264805-28264824 | MS.gene96779:CDS | 50.0% | |
| TGGGGTGTGGAAGAGAAAGA+TGG | - | chr4.3:28263657-28263676 | None:intergenic | 50.0% | |
| ! | AAATCGGAGATTAGTGGGCG+GGG | + | chr4.3:28264072-28264091 | MS.gene96779:CDS | 50.0% |
| ! | AATTCCGGCATTGGATGCAG+TGG | + | chr4.3:28264917-28264936 | MS.gene96779:CDS | 50.0% |
| ! | ATGTAGTGGGAGGTGATCAC+AGG | + | chr4.3:28264955-28264974 | MS.gene96779:CDS | 50.0% |
| ! | TGTAGTGGGAGGTGATCACA+GGG | + | chr4.3:28264956-28264975 | MS.gene96779:CDS | 50.0% |
| !! | GCTCTGTTGCTTTGGATCTG+AGG | - | chr4.3:28263567-28263586 | None:intergenic | 50.0% |
| !! | TGGCAGTGGTGGTGGAAATT+TGG | + | chr4.3:28265019-28265038 | MS.gene96779:CDS | 50.0% |
| AAGAGAAAAGGCGGTGGCAG+TGG | + | chr4.3:28265005-28265024 | MS.gene96779:CDS | 55.0% | |
| AATGCGAGGCGGTTGCATGT+TGG | + | chr4.3:28264531-28264550 | MS.gene96779:CDS | 55.0% | |
| ACATGCAACCGCCTCGCATT+AGG | - | chr4.3:28264531-28264550 | None:intergenic | 55.0% | |
| ATGCGAGGCGGTTGCATGTT+GGG | + | chr4.3:28264532-28264551 | MS.gene96779:CDS | 55.0% | |
| CGTGTTGTCCTAATGCGAGG+CGG | + | chr4.3:28264520-28264539 | MS.gene96779:CDS | 55.0% | |
| CTGCATTTCCCTCTGCAACC+GGG | + | chr4.3:28263711-28263730 | MS.gene96779:CDS | 55.0% | |
| GAAGGTGAGGGGGAAAGAGA+AGG | + | chr4.3:28264815-28264834 | MS.gene96779:CDS | 55.0% | |
| GGGAAGGAGAATTCCGGCAT+TGG | + | chr4.3:28264908-28264927 | MS.gene96779:CDS | 55.0% | |
| GGTTACTAAGGCGGTTGCGA+TGG | + | chr4.3:28264137-28264156 | MS.gene96779:CDS | 55.0% | |
| ! | AATCGGAGATTAGTGGGCGG+GGG | + | chr4.3:28264073-28264092 | MS.gene96779:CDS | 55.0% |
| AGAAAAGGCGGTGGCAGTGG+TGG | + | chr4.3:28265008-28265027 | MS.gene96779:CDS | 60.0% | |
| CTAAGGCGGTTGCGATGGAG+AGG | + | chr4.3:28264142-28264161 | MS.gene96779:CDS | 60.0% | |
| GCAAGCTCAGGAGCCTTACC+AGG | - | chr4.3:28264024-28264043 | None:intergenic | 60.0% | |
| TGCGAGGCGGTTGCATGTTG+GGG | + | chr4.3:28264533-28264552 | MS.gene96779:CDS | 60.0% | |
| ! | ATCGGAGATTAGTGGGCGGG+GGG | + | chr4.3:28264074-28264093 | MS.gene96779:CDS | 60.0% |
| ! | CGGAGGCTTATGGTTCGGAG+AGG | + | chr4.3:28264871-28264890 | MS.gene96779:CDS | 60.0% |
| !! | TGGTGAAGTGGGTTGGGGTG+TGG | - | chr4.3:28263670-28263689 | None:intergenic | 60.0% |
| AAAGGCGGTGGCAGTGGTGG+TGG | + | chr4.3:28265011-28265030 | MS.gene96779:CDS | 65.0% | |
| TGCTTCGGCCCGGTTGCAGA+GGG | - | chr4.3:28263722-28263741 | None:intergenic | 65.0% | |
| TTGCTTCGGCCCGGTTGCAG+AGG | - | chr4.3:28263723-28263742 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28263523 | 28265142 | 28263523 | ID=MS.gene96779 |
| chr4.3 | mRNA | 28263523 | 28265142 | 28263523 | ID=MS.gene96779.t1;Parent=MS.gene96779 |
| chr4.3 | exon | 28263523 | 28265142 | 28263523 | ID=MS.gene96779.t1.exon1;Parent=MS.gene96779.t1 |
| chr4.3 | CDS | 28263523 | 28265142 | 28263523 | ID=cds.MS.gene96779.t1;Parent=MS.gene96779.t1 |
| Gene Sequence |
| Protein sequence |
