Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96790.t1 | XP_003607748.1 | 84.2 | 467 | 72 | 1 | 1 | 467 | 1 | 465 | 4.20E-215 | 757.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96790.t1 | Q8LFV3 | 42.0 | 371 | 174 | 12 | 113 | 466 | 101 | 447 | 3.8e-55 | 217.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96790.t1 | G7JG96 | 84.2 | 467 | 72 | 1 | 1 | 467 | 1 | 465 | 3.0e-215 | 757.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene96790.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050702 | MS.gene96790 | 0.857039 | 2.14E-62 | -1.69E-46 |
MS.gene052224 | MS.gene96790 | 0.845752 | 3.34E-59 | -1.69E-46 |
MS.gene053401 | MS.gene96790 | -0.861586 | 9.24E-64 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96790.t1 | MTR_4g082060 | 95.075 | 467 | 21 | 1 | 1 | 467 | 1 | 465 | 0.0 | 894 |
MS.gene96790.t1 | MTR_6g012450 | 44.071 | 506 | 229 | 18 | 1 | 465 | 1 | 493 | 9.11e-115 | 347 |
MS.gene96790.t1 | MTR_7g010950 | 43.687 | 499 | 232 | 14 | 1 | 465 | 1 | 484 | 8.14e-107 | 326 |
MS.gene96790.t1 | MTR_3g435480 | 43.838 | 495 | 216 | 20 | 1 | 465 | 1 | 463 | 9.76e-105 | 320 |
MS.gene96790.t1 | MTR_5g041530 | 41.237 | 485 | 151 | 17 | 6 | 465 | 4 | 379 | 1.13e-86 | 270 |
MS.gene96790.t1 | MTR_5g041380 | 38.320 | 488 | 151 | 17 | 6 | 465 | 4 | 369 | 2.55e-73 | 236 |
MS.gene96790.t1 | MTR_5g041400 | 36.605 | 489 | 152 | 18 | 6 | 466 | 4 | 362 | 8.28e-71 | 229 |
MS.gene96790.t1 | MTR_8g044220 | 33.537 | 492 | 231 | 19 | 5 | 465 | 11 | 437 | 4.82e-62 | 208 |
MS.gene96790.t1 | MTR_7g086780 | 32.787 | 488 | 237 | 17 | 1 | 465 | 1 | 420 | 6.42e-59 | 199 |
MS.gene96790.t1 | MTR_5g041420 | 49.528 | 212 | 70 | 8 | 4 | 185 | 2 | 206 | 2.19e-50 | 174 |
MS.gene96790.t1 | MTR_6g027460 | 34.056 | 323 | 142 | 11 | 4 | 306 | 9 | 280 | 1.71e-42 | 154 |
MS.gene96790.t1 | MTR_6g027450 | 46.857 | 175 | 76 | 4 | 85 | 243 | 51 | 224 | 1.05e-41 | 151 |
MS.gene96790.t1 | MTR_2g016030 | 86.667 | 60 | 8 | 0 | 116 | 175 | 41 | 100 | 1.20e-33 | 124 |
MS.gene96790.t1 | MTR_3g091820 | 61.765 | 68 | 26 | 0 | 108 | 175 | 29 | 96 | 1.33e-25 | 106 |
MS.gene96790.t1 | MTR_8g027295 | 65.625 | 64 | 22 | 0 | 117 | 180 | 19 | 82 | 2.92e-25 | 105 |
MS.gene96790.t1 | MTR_8g068210 | 52.381 | 84 | 40 | 0 | 97 | 180 | 7 | 90 | 5.48e-25 | 105 |
MS.gene96790.t1 | MTR_8g079060 | 63.934 | 61 | 22 | 0 | 122 | 182 | 29 | 89 | 1.31e-24 | 102 |
MS.gene96790.t1 | MTR_2g093220 | 64.615 | 65 | 23 | 0 | 111 | 175 | 29 | 93 | 2.73e-24 | 102 |
MS.gene96790.t1 | MTR_8g479350 | 66.102 | 59 | 20 | 0 | 122 | 180 | 68 | 126 | 3.58e-24 | 103 |
MS.gene96790.t1 | MTR_4g022370 | 67.241 | 58 | 19 | 0 | 118 | 175 | 78 | 135 | 4.04e-24 | 103 |
MS.gene96790.t1 | MTR_1g077600 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 9.08e-24 | 100 |
MS.gene96790.t1 | MTR_1g077600 | 57.971 | 69 | 29 | 0 | 106 | 174 | 27 | 95 | 9.65e-24 | 101 |
MS.gene96790.t1 | MTR_4g088580 | 74.074 | 54 | 14 | 0 | 124 | 177 | 57 | 110 | 1.55e-23 | 102 |
MS.gene96790.t1 | MTR_2g059540 | 73.469 | 49 | 13 | 0 | 122 | 170 | 31 | 79 | 3.73e-23 | 97.4 |
MS.gene96790.t1 | MTR_1g056810 | 53.333 | 90 | 40 | 2 | 117 | 204 | 6 | 95 | 5.64e-23 | 99.0 |
MS.gene96790.t1 | MTR_4g063780 | 58.571 | 70 | 26 | 1 | 108 | 174 | 58 | 127 | 5.75e-23 | 99.8 |
MS.gene96790.t1 | MTR_2g096740 | 68.519 | 54 | 17 | 0 | 122 | 175 | 62 | 115 | 6.72e-23 | 98.6 |
MS.gene96790.t1 | MTR_2g096740 | 68.519 | 54 | 17 | 0 | 122 | 175 | 77 | 130 | 6.95e-23 | 99.0 |
MS.gene96790.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 120 | 172 | 38 | 90 | 7.25e-23 | 99.4 |
MS.gene96790.t1 | MTR_8g015840 | 62.903 | 62 | 23 | 0 | 122 | 183 | 20 | 81 | 8.60e-23 | 96.7 |
MS.gene96790.t1 | MTR_4g461080 | 56.000 | 75 | 29 | 1 | 104 | 174 | 7 | 81 | 2.51e-22 | 97.1 |
MS.gene96790.t1 | MTR_7g059400 | 71.154 | 52 | 15 | 0 | 124 | 175 | 78 | 129 | 3.56e-22 | 97.8 |
MS.gene96790.t1 | MTR_4g089095 | 70.370 | 54 | 15 | 1 | 124 | 177 | 52 | 104 | 7.44e-22 | 95.9 |
MS.gene96790.t1 | MTR_7g024670 | 72.549 | 51 | 14 | 0 | 124 | 174 | 79 | 129 | 8.55e-22 | 97.1 |
MS.gene96790.t1 | MTR_2g013370 | 67.857 | 56 | 17 | 1 | 122 | 177 | 46 | 100 | 9.60e-22 | 95.1 |
MS.gene96790.t1 | MTR_4g089095 | 70.370 | 54 | 15 | 1 | 124 | 177 | 18 | 70 | 9.70e-22 | 94.7 |
MS.gene96790.t1 | MTR_3g090430 | 59.155 | 71 | 27 | 2 | 107 | 175 | 34 | 104 | 1.03e-21 | 96.3 |
MS.gene96790.t1 | MTR_5g031440 | 63.636 | 55 | 20 | 0 | 118 | 172 | 39 | 93 | 1.93e-21 | 95.5 |
MS.gene96790.t1 | MTR_2g014170 | 71.429 | 49 | 14 | 0 | 122 | 170 | 45 | 93 | 2.01e-21 | 95.1 |
MS.gene96790.t1 | MTR_3g077750 | 61.290 | 62 | 23 | 1 | 112 | 172 | 50 | 111 | 3.41e-21 | 94.7 |
MS.gene96790.t1 | MTR_2g014060 | 70.000 | 50 | 15 | 0 | 124 | 173 | 27 | 76 | 3.75e-21 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene96790.t1 | AT3G47500 | 40.408 | 490 | 224 | 17 | 1 | 466 | 2 | 447 | 6.86e-85 | 268 |
MS.gene96790.t1 | AT5G39660 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.62e-80 | 256 |
MS.gene96790.t1 | AT5G39660 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.62e-80 | 256 |
MS.gene96790.t1 | AT5G39660 | 37.403 | 516 | 208 | 17 | 4 | 465 | 1 | 455 | 2.62e-80 | 256 |
MS.gene96790.t1 | AT5G62430 | 41.361 | 382 | 111 | 15 | 89 | 466 | 25 | 297 | 1.41e-64 | 211 |
MS.gene96790.t1 | AT1G69570 | 32.985 | 479 | 223 | 17 | 1 | 465 | 1 | 395 | 5.68e-48 | 170 |
MS.gene96790.t1 | AT1G26790 | 32.265 | 468 | 210 | 17 | 1 | 465 | 7 | 370 | 3.63e-47 | 167 |
MS.gene96790.t1 | AT1G29160 | 88.333 | 60 | 7 | 0 | 116 | 175 | 56 | 115 | 2.41e-35 | 129 |
MS.gene96790.t1 | AT2G34140 | 52.727 | 110 | 52 | 0 | 66 | 175 | 2 | 111 | 4.73e-34 | 126 |
MS.gene96790.t1 | AT5G60200 | 37.931 | 174 | 99 | 4 | 118 | 288 | 51 | 218 | 2.63e-27 | 110 |
MS.gene96790.t1 | AT4G24060 | 61.538 | 65 | 25 | 0 | 111 | 175 | 42 | 106 | 2.63e-24 | 103 |
MS.gene96790.t1 | AT1G51700 | 53.086 | 81 | 31 | 1 | 100 | 180 | 18 | 91 | 2.69e-24 | 100 |
MS.gene96790.t1 | AT3G55370 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 3.82e-24 | 103 |
MS.gene96790.t1 | AT3G55370 | 43.243 | 111 | 49 | 2 | 118 | 217 | 72 | 179 | 4.52e-24 | 103 |
MS.gene96790.t1 | AT5G60850 | 72.222 | 54 | 15 | 0 | 122 | 175 | 51 | 104 | 4.72e-24 | 102 |
MS.gene96790.t1 | AT2G28810 | 46.078 | 102 | 49 | 2 | 78 | 173 | 27 | 128 | 5.02e-24 | 102 |
MS.gene96790.t1 | AT3G55370 | 67.241 | 58 | 19 | 0 | 118 | 175 | 117 | 174 | 5.79e-24 | 103 |
MS.gene96790.t1 | AT3G50410 | 68.421 | 57 | 18 | 0 | 122 | 178 | 30 | 86 | 6.70e-24 | 100 |
MS.gene96790.t1 | AT2G28810 | 46.078 | 102 | 49 | 2 | 78 | 173 | 44 | 145 | 7.25e-24 | 102 |
MS.gene96790.t1 | AT1G21340 | 48.936 | 94 | 37 | 3 | 124 | 216 | 40 | 123 | 9.31e-24 | 100 |
MS.gene96790.t1 | AT2G37590 | 57.576 | 66 | 28 | 0 | 110 | 175 | 77 | 142 | 1.19e-23 | 101 |
MS.gene96790.t1 | AT1G64620 | 55.128 | 78 | 34 | 1 | 93 | 170 | 21 | 97 | 1.50e-23 | 102 |
MS.gene96790.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.81e-23 | 100 |
MS.gene96790.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 1.81e-23 | 100 |
MS.gene96790.t1 | AT3G61850 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 2.20e-23 | 100 |
MS.gene96790.t1 | AT3G61850 | 60.938 | 64 | 25 | 0 | 112 | 175 | 52 | 115 | 3.12e-23 | 100 |
MS.gene96790.t1 | AT3G61850 | 58.824 | 68 | 28 | 0 | 112 | 179 | 64 | 131 | 3.56e-23 | 100 |
MS.gene96790.t1 | AT3G21270 | 71.698 | 53 | 15 | 0 | 122 | 174 | 29 | 81 | 3.91e-23 | 97.4 |
MS.gene96790.t1 | AT2G28510 | 67.797 | 59 | 19 | 0 | 124 | 182 | 50 | 108 | 6.90e-23 | 98.6 |
MS.gene96790.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 21 | 73 | 7.89e-23 | 98.2 |
MS.gene96790.t1 | AT3G45610 | 57.143 | 63 | 27 | 0 | 118 | 180 | 36 | 98 | 8.52e-23 | 97.4 |
MS.gene96790.t1 | AT1G28310 | 70.370 | 54 | 16 | 0 | 122 | 175 | 27 | 80 | 9.41e-23 | 99.0 |
MS.gene96790.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 77 | 129 | 1.29e-22 | 99.0 |
MS.gene96790.t1 | AT1G28310 | 47.475 | 99 | 43 | 2 | 79 | 175 | 13 | 104 | 1.54e-22 | 98.6 |
MS.gene96790.t1 | AT1G07640 | 69.811 | 53 | 16 | 0 | 122 | 174 | 85 | 137 | 1.64e-22 | 98.6 |
MS.gene96790.t1 | AT5G02460 | 57.746 | 71 | 27 | 1 | 108 | 175 | 78 | 148 | 1.84e-22 | 99.4 |
MS.gene96790.t1 | AT5G66940 | 60.000 | 60 | 24 | 0 | 122 | 181 | 32 | 91 | 2.45e-22 | 95.5 |
MS.gene96790.t1 | AT5G65590 | 54.930 | 71 | 32 | 0 | 105 | 175 | 24 | 94 | 3.33e-22 | 97.4 |
MS.gene96790.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.50e-22 | 96.7 |
MS.gene96790.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.50e-22 | 96.7 |
MS.gene96790.t1 | AT4G00940 | 56.757 | 74 | 27 | 1 | 109 | 177 | 50 | 123 | 4.50e-22 | 96.7 |
MS.gene96790.t1 | AT1G47655 | 71.429 | 49 | 14 | 0 | 122 | 170 | 29 | 77 | 7.47e-22 | 94.0 |
MS.gene96790.t1 | AT3G52440 | 48.936 | 94 | 40 | 3 | 93 | 180 | 11 | 102 | 9.76e-22 | 95.1 |
MS.gene96790.t1 | AT4G38000 | 62.500 | 56 | 20 | 1 | 121 | 176 | 40 | 94 | 2.75e-21 | 93.2 |
MS.gene96790.t1 | AT3G52440 | 64.912 | 57 | 20 | 0 | 124 | 180 | 27 | 83 | 2.88e-21 | 93.2 |
MS.gene96790.t1 | AT2G46590 | 60.656 | 61 | 22 | 1 | 109 | 169 | 57 | 115 | 3.47e-21 | 95.1 |
MS.gene96790.t1 | AT2G46590 | 60.656 | 61 | 22 | 1 | 109 | 169 | 69 | 127 | 3.73e-21 | 95.1 |
MS.gene96790.t1 | AT4G21050 | 43.564 | 101 | 55 | 1 | 115 | 213 | 17 | 117 | 6.46e-21 | 91.3 |
MS.gene96790.t1 | AT5G62940 | 69.388 | 49 | 15 | 0 | 124 | 172 | 75 | 123 | 9.83e-20 | 90.9 |
MS.gene96790.t1 | AT4G21040 | 47.297 | 74 | 37 | 1 | 102 | 175 | 7 | 78 | 1.14e-17 | 82.4 |
MS.gene96790.t1 | AT4G21080 | 57.692 | 52 | 22 | 0 | 124 | 175 | 27 | 78 | 1.54e-16 | 79.7 |
MS.gene96790.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 124 | 167 | 23 | 66 | 4.07e-11 | 62.8 |
Find 123 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAGTTCTGTCCCGACTTT+GGG | 0.197222 | 4.3:-28447685 | MS.gene96790:CDS |
CCCTAATGGATTACATAGTT+TGG | 0.197772 | 4.3:-28448160 | MS.gene96790:CDS |
GTAATTAGTTCTTTCCTTGA+TGG | 0.235655 | 4.3:+28448600 | None:intergenic |
CCAAACTATGTAATCCATTA+GGG | 0.240822 | 4.3:+28448160 | None:intergenic |
AGTAACTCCACCTGCATATT+GGG | 0.244547 | 4.3:-28447782 | MS.gene96790:CDS |
TCATCAAATCTAAGTGTCTT+TGG | 0.276528 | 4.3:+28447565 | None:intergenic |
CAATATGCAGGTGGAGTTAC+TGG | 0.285499 | 4.3:+28447784 | None:intergenic |
GTAAGAAATGTCAAAGATAC+TGG | 0.307217 | 4.3:-28448299 | MS.gene96790:CDS |
ATTGTTGAAGTAACAAAATT+TGG | 0.309323 | 4.3:+28448350 | None:intergenic |
CCCAAACTATGTAATCCATT+AGG | 0.311917 | 4.3:+28448159 | None:intergenic |
ATTCCATGGATAAGGCAAAA+AGG | 0.312423 | 4.3:+28447864 | None:intergenic |
CAGTAACTCCACCTGCATAT+TGG | 0.313645 | 4.3:-28447783 | MS.gene96790:CDS |
GCTAAACTTAATTCCCCTAA+TGG | 0.325757 | 4.3:-28448174 | MS.gene96790:CDS |
GCCTCCTCCATTGAGAGAAT+TGG | 0.332869 | 4.3:+28447483 | None:intergenic |
CCTAATGGATTACATAGTTT+GGG | 0.335592 | 4.3:-28448159 | MS.gene96790:CDS |
TAGAATGCTAATGGATAGTT+TGG | 0.337503 | 4.3:+28447811 | None:intergenic |
GTTTCAGCTGATGGAGTCTT+AGG | 0.353075 | 4.3:+28448495 | None:intergenic |
ATCATGCAAGTTCGTATAGT+AGG | 0.370122 | 4.3:-28448026 | MS.gene96790:CDS |
TCTCAGTTCTGTCCCGACTT+TGG | 0.371870 | 4.3:-28447686 | MS.gene96790:CDS |
AAAGGCCACACCGGCACAAA+TGG | 0.375943 | 4.3:-28447943 | MS.gene96790:CDS |
GACCCTGCGATAAAGCTCTT+TGG | 0.376470 | 4.3:-28449862 | MS.gene96790:CDS |
ACAAATGGGTTGGTAGATAA+AGG | 0.391250 | 4.3:-28447928 | MS.gene96790:CDS |
AGGGAAAATGATCACTCAAT+TGG | 0.410885 | 4.3:-28448006 | MS.gene96790:CDS |
CATCAAATCTAAGTGTCTTT+GGG | 0.411049 | 4.3:+28447566 | None:intergenic |
TGATTAACAGAAGCACTTCC+TGG | 0.414702 | 4.3:+28447721 | None:intergenic |
GAACTCCTTGCAGCTTCACT+TGG | 0.415659 | 4.3:+28447541 | None:intergenic |
AGAGGGAGATGAAGAGTCAT+TGG | 0.419013 | 4.3:+28449804 | None:intergenic |
AGATTTCAATAACGAATTCT+CGG | 0.425048 | 4.3:+28448473 | None:intergenic |
TTGGTAGATAAAGGAGTTGA+AGG | 0.425049 | 4.3:-28447919 | MS.gene96790:CDS |
GGATTACATAGTTTGGGAAA+TGG | 0.427090 | 4.3:-28448153 | MS.gene96790:CDS |
ACTCAAAATTGTGTGTCAAA+TGG | 0.434475 | 4.3:-28448054 | MS.gene96790:CDS |
TGTATTGCAGAGGTGAATTC+TGG | 0.445396 | 4.3:+28449772 | None:intergenic |
AGTTCATTGTGGTCAAAGCT+TGG | 0.456620 | 4.3:-28447523 | MS.gene96790:CDS |
TTGAGTGTTTCCCCAAAGTC+GGG | 0.458025 | 4.3:+28447674 | None:intergenic |
ACTGGAGTATAGAATGCTAA+TGG | 0.468260 | 4.3:+28447802 | None:intergenic |
GTGATTCATGTCCTTTACCT+TGG | 0.468280 | 4.3:+28447441 | None:intergenic |
GTTCATTGTGGTCAAAGCTT+GGG | 0.469560 | 4.3:-28447522 | MS.gene96790:CDS |
GACAAAGCCAATTCTCTCAA+TGG | 0.470994 | 4.3:-28447490 | MS.gene96790:CDS |
TGGATAGTTTGGTGGACAAA+AGG | 0.471372 | 4.3:+28447822 | None:intergenic |
GGAGATGAAGAGTCATTGGC+AGG | 0.477484 | 4.3:+28449808 | None:intergenic |
AATGGAGGAGGCATGTTCAA+TGG | 0.477902 | 4.3:-28447472 | MS.gene96790:CDS |
GAATTCTCGGTTTCAGCTGA+TGG | 0.478162 | 4.3:+28448486 | None:intergenic |
ATGCTATTGCATCGCGGGCA+TGG | 0.486276 | 4.3:+28448378 | None:intergenic |
GAATTCTGGTGGAGAAGAAG+AGG | 0.486452 | 4.3:+28449786 | None:intergenic |
ATTGCAGAATTCCATGGATA+AGG | 0.486834 | 4.3:+28447856 | None:intergenic |
GAATTAAGTTTAGCACCCTC+TGG | 0.491397 | 4.3:+28448183 | None:intergenic |
TTGCGGCGACCAGCTCCAAC+AGG | 0.495368 | 4.3:+28448249 | None:intergenic |
CCGCGATAAAGCCGCAGGGT+TGG | 0.504467 | 4.3:+28447390 | None:intergenic |
AATGATCACTCAATTGGAGT+TGG | 0.507132 | 4.3:-28448000 | MS.gene96790:CDS |
AACTCCTTGCAGCTTCACTT+GGG | 0.509294 | 4.3:+28447542 | None:intergenic |
TCAAATTCATCAGATAGAAA+AGG | 0.510956 | 4.3:-28447961 | MS.gene96790:CDS |
AAGGCCACACCGGCACAAAT+GGG | 0.516822 | 4.3:-28447942 | MS.gene96790:CDS |
GGCATACAACCCCAATATGC+AGG | 0.516977 | 4.3:+28447772 | None:intergenic |
TGGATTTCAGTCCAAGGTAA+AGG | 0.518064 | 4.3:-28447452 | MS.gene96790:CDS |
CAATTAGGTTTCCTCATGGA+AGG | 0.522646 | 4.3:+28447360 | None:intergenic |
CTTGAGTGTTTCCCCAAAGT+CGG | 0.525777 | 4.3:+28447673 | None:intergenic |
TGTCAAAGATACTGGACTGC+AGG | 0.528621 | 4.3:-28448291 | MS.gene96790:CDS |
ATCTACCAACCCATTTGTGC+CGG | 0.532135 | 4.3:+28447933 | None:intergenic |
TGTCCATGCTATTGCATCGC+GGG | 0.535971 | 4.3:+28448373 | None:intergenic |
CGAGACCGCGATAAAGCCGC+AGG | 0.536771 | 4.3:+28447385 | None:intergenic |
CGACTTTGGGGAAACACTCA+AGG | 0.540052 | 4.3:-28447672 | MS.gene96790:CDS |
TCATGCAAGTTCGTATAGTA+GGG | 0.541345 | 4.3:-28448025 | MS.gene96790:CDS |
TTCACAATTAGGTTTCCTCA+TGG | 0.553418 | 4.3:+28447356 | None:intergenic |
ATCCTCAGTGGTTTGTTGCG+AGG | 0.554021 | 4.3:+28448560 | None:intergenic |
AATGCTAATGGATAGTTTGG+TGG | 0.554354 | 4.3:+28447814 | None:intergenic |
GAGACACATGGTATATTCCA+TGG | 0.554398 | 4.3:+28447745 | None:intergenic |
CTTCCAAAGAGCTTTATCGC+AGG | 0.556819 | 4.3:+28449859 | None:intergenic |
ACAATGAGAAATGTTCCTGT+TGG | 0.557862 | 4.3:-28448264 | MS.gene96790:CDS |
TCAGCTGATGGAGTCTTAGG+AGG | 0.562404 | 4.3:+28448498 | None:intergenic |
TAGTTTGGTGGACAAAAGGT+AGG | 0.562573 | 4.3:+28447826 | None:intergenic |
AATTCTGGTGGAGAAGAAGA+GGG | 0.562827 | 4.3:+28449787 | None:intergenic |
GCCAATTCTCTCAATGGAGG+AGG | 0.563194 | 4.3:-28447484 | MS.gene96790:CDS |
TTCCAAAGAGCTTTATCGCA+GGG | 0.567023 | 4.3:+28449860 | None:intergenic |
GAATATGTTGCAACTGAGGA+GGG | 0.570048 | 4.3:+28447893 | None:intergenic |
GGAGGCATTGCAGAATTCCA+TGG | 0.572249 | 4.3:+28447850 | None:intergenic |
TTTGGTGGACAAAAGGTAGG+AGG | 0.574664 | 4.3:+28447829 | None:intergenic |
GGAATATGTTGCAACTGAGG+AGG | 0.574863 | 4.3:+28447892 | None:intergenic |
AGAAATGTTCCTGTTGGAGC+TGG | 0.575931 | 4.3:-28448258 | MS.gene96790:CDS |
CTTGGAATATGTTGCAACTG+AGG | 0.581444 | 4.3:+28447889 | None:intergenic |
TTGGGGAAACACTCAAGGGA+TGG | 0.586619 | 4.3:-28447667 | MS.gene96790:CDS |
GGGGTTGTATGCCACCTCCA+TGG | 0.588317 | 4.3:-28447762 | MS.gene96790:CDS |
CATGGTATATTCCATGGAGG+TGG | 0.595774 | 4.3:+28447751 | None:intergenic |
GGTGGACAAAAGGTAGGAGG+AGG | 0.603448 | 4.3:+28447832 | None:intergenic |
CCAACCCATTTGTGCCGGTG+TGG | 0.605033 | 4.3:+28447938 | None:intergenic |
CGACATTTGATAATTCCAGA+GGG | 0.606272 | 4.3:-28448198 | MS.gene96790:CDS |
TCAGTTCTGTCCCGACTTTG+GGG | 0.606745 | 4.3:-28447684 | MS.gene96790:CDS |
CCACACCGGCACAAATGGGT+TGG | 0.611096 | 4.3:-28447938 | MS.gene96790:CDS |
GTAACTCCACCTGCATATTG+GGG | 0.611433 | 4.3:-28447781 | MS.gene96790:CDS |
CAAAGATACTGGACTGCAGG+AGG | 0.611856 | 4.3:-28448288 | MS.gene96790:CDS |
GTTCAATGGATTTCAGTCCA+AGG | 0.615097 | 4.3:-28447458 | MS.gene96790:CDS |
CTGCGATAAAGCTCTTTGGA+AGG | 0.619750 | 4.3:-28449858 | MS.gene96790:CDS |
AATATACCATGTGTCTCACC+AGG | 0.620306 | 4.3:-28447739 | MS.gene96790:CDS |
GATGTTCAATACAGAAGCCA+TGG | 0.623380 | 4.3:+28448086 | None:intergenic |
GAGATGAAGAGTCATTGGCA+GGG | 0.625244 | 4.3:+28449809 | None:intergenic |
TCGACATTTGATAATTCCAG+AGG | 0.625580 | 4.3:-28448199 | MS.gene96790:CDS |
TCATTGGCAGGGATGATCAG+TGG | 0.630276 | 4.3:+28449820 | None:intergenic |
GCACTTCCTGGTGAGACACA+TGG | 0.630353 | 4.3:+28447733 | None:intergenic |
AGTTTCATGCTGTATTGCAG+AGG | 0.631365 | 4.3:+28449762 | None:intergenic |
GACTTTGGGGAAACACTCAA+GGG | 0.631484 | 4.3:-28447671 | MS.gene96790:CDS |
ATGACCCAAGTGAAGCTGCA+AGG | 0.632038 | 4.3:-28447546 | MS.gene96790:CDS |
GTGTCCATGCTATTGCATCG+CGG | 0.634519 | 4.3:+28448372 | None:intergenic |
ATGCCCGCGATGCAATAGCA+TGG | 0.635421 | 4.3:-28448376 | MS.gene96790:CDS |
CCAACCCTGCGGCTTTATCG+CGG | 0.637960 | 4.3:-28447390 | MS.gene96790:CDS |
GGGATGATCAGTGGAAGAAG+CGG | 0.640321 | 4.3:+28449829 | None:intergenic |
GAGAGCTCTTAAATCCTCAG+TGG | 0.645204 | 4.3:+28448548 | None:intergenic |
GCAGGGTTGGCATACATCAG+CGG | 0.645757 | 4.3:+28447403 | None:intergenic |
CAAACTATGTAATCCATTAG+GGG | 0.651674 | 4.3:+28448161 | None:intergenic |
TCAGATAGAAAAGGCCACAC+CGG | 0.654081 | 4.3:-28447952 | MS.gene96790:CDS |
CTAATTACAGCACAAGACGA+TGG | 0.658149 | 4.3:-28448585 | MS.gene96790:CDS |
AAAGCCAATTCTCTCAATGG+AGG | 0.662101 | 4.3:-28447487 | MS.gene96790:CDS |
TGCAATACAGCATGAAACTG+AGG | 0.664237 | 4.3:-28449758 | MS.gene96790:intron |
GCCATGGTGTTACAAAGCGG+AGG | 0.666467 | 4.3:+28448102 | None:intergenic |
ATTGCAGAGGTGAATTCTGG+TGG | 0.675104 | 4.3:+28449775 | None:intergenic |
TCCTCCGCTTTGTAACACCA+TGG | 0.687107 | 4.3:-28448103 | MS.gene96790:CDS |
AAGCTGCAAGGAGTTCATTG+TGG | 0.697169 | 4.3:-28447534 | MS.gene96790:CDS |
GGTAAAGGACATGAATCACA+CGG | 0.721107 | 4.3:-28447437 | MS.gene96790:CDS |
ATACAACCCCAATATGCAGG+TGG | 0.724114 | 4.3:+28447775 | None:intergenic |
GAAGCCATGGTGTTACAAAG+CGG | 0.731105 | 4.3:+28448099 | None:intergenic |
GAGACCGCGATAAAGCCGCA+GGG | 0.731318 | 4.3:+28447386 | None:intergenic |
GCGGTCTCGTACCTTCCATG+AGG | 0.732623 | 4.3:-28447371 | MS.gene96790:CDS |
ACACATGGTATATTCCATGG+AGG | 0.757531 | 4.3:+28447748 | None:intergenic |
GCTGATGTATGCCAACCCTG+CGG | 0.770728 | 4.3:-28447401 | MS.gene96790:CDS |
AGCCTCGCAACAAACCACTG+AGG | 0.809905 | 4.3:-28448562 | MS.gene96790:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTATATAAAAATTGTTCA+TGG | - | chr4.3:28448129-28448148 | MS.gene96790:CDS | 10.0% |
!! | TATATAAAAATAGCAGAAAA+GGG | + | chr4.3:28448367-28448386 | None:intergenic | 15.0% |
!! | TTATATAAAAATAGCAGAAA+AGG | + | chr4.3:28448368-28448387 | None:intergenic | 15.0% |
!!! | CAATTATCAATTTTTTGTTT+TGG | - | chr4.3:28447880-28447899 | MS.gene96790:CDS | 15.0% |
!!! | TTAATCATATTCATTGTTTT+AGG | - | chr4.3:28448615-28448634 | MS.gene96790:intron | 15.0% |
!! | AATTAACTGCTTAAGAAAAA+TGG | + | chr4.3:28447596-28447615 | None:intergenic | 20.0% |
!! | ATTAACTGCTTAAGAAAAAT+GGG | + | chr4.3:28447595-28447614 | None:intergenic | 20.0% |
!! | ATTGTTGAAGTAACAAAATT+TGG | + | chr4.3:28448893-28448912 | None:intergenic | 20.0% |
!! | TAAAACTAATCTATGGTATT+TGG | + | chr4.3:28448178-28448197 | None:intergenic | 20.0% |
!! | TTAAGCAGTTAATTGTTAAT+GGG | - | chr4.3:28447602-28447621 | MS.gene96790:CDS | 20.0% |
!!! | AATACCATAGATTAGTTTTA+TGG | - | chr4.3:28448178-28448197 | MS.gene96790:CDS | 20.0% |
!!! | TTGAATCTTTTATTAAGTTG+TGG | - | chr4.3:28447738-28447757 | MS.gene96790:CDS | 20.0% |
!!! | TTTGTTTTTTACTTCTATTG+AGG | - | chr4.3:28448531-28448550 | MS.gene96790:CDS | 20.0% |
! | AAATTGGATCGAATTTATTC+TGG | - | chr4.3:28447791-28447810 | MS.gene96790:CDS | 25.0% |
! | ACATTTCTTACAAAAATGAC+GGG | + | chr4.3:28448932-28448951 | None:intergenic | 25.0% |
! | AGATTTCAATAACGAATTCT+CGG | + | chr4.3:28448770-28448789 | None:intergenic | 25.0% |
! | CTTAAGCAGTTAATTGTTAA+TGG | - | chr4.3:28447601-28447620 | MS.gene96790:CDS | 25.0% |
! | GACATTTCTTACAAAAATGA+CGG | + | chr4.3:28448933-28448952 | None:intergenic | 25.0% |
! | TAACCAAAAAACTTCAATCA+AGG | + | chr4.3:28447979-28447998 | None:intergenic | 25.0% |
! | TCAAATTCATCAGATAGAAA+AGG | - | chr4.3:28449279-28449298 | MS.gene96790:intron | 25.0% |
!! | CAAAATAGTTTAGTTCAAGT+CGG | + | chr4.3:28448011-28448030 | None:intergenic | 25.0% |
!! | TAGATAAGTTTTTGTTCTTG+CGG | + | chr4.3:28449011-28449030 | None:intergenic | 25.0% |
!! | TTTTGATGTCAATTGAATTG+AGG | - | chr4.3:28447642-28447661 | MS.gene96790:CDS | 25.0% |
!!! | CTGCATATAATTTTAGTATG+AGG | + | chr4.3:28448403-28448422 | None:intergenic | 25.0% |
!!! | TTTATGGACTGTTAGTTTTT+AGG | - | chr4.3:28448194-28448213 | MS.gene96790:CDS | 25.0% |
!!! | TTTCTTCAGAGTTTTTTCTT+CGG | + | chr4.3:28448827-28448846 | None:intergenic | 25.0% |
AACTTACTGTGTACACAAAA+GGG | + | chr4.3:28448582-28448601 | None:intergenic | 30.0% | |
AATTATGTTGTGATGTCACA+AGG | + | chr4.3:28448109-28448128 | None:intergenic | 30.0% | |
ACTCAAAATTGTGTGTCAAA+TGG | - | chr4.3:28449186-28449205 | MS.gene96790:intron | 30.0% | |
ATTGTTCATGGACATATTAC+TGG | - | chr4.3:28448141-28448160 | MS.gene96790:CDS | 30.0% | |
CAAACTATGTAATCCATTAG+GGG | + | chr4.3:28449082-28449101 | None:intergenic | 30.0% | |
CAGTCCATAAAACTAATCTA+TGG | + | chr4.3:28448185-28448204 | None:intergenic | 30.0% | |
CATCAAATCTAAGTGTCTTT+GGG | + | chr4.3:28449677-28449696 | None:intergenic | 30.0% | |
CATTTCTTACAAAAATGACG+GGG | + | chr4.3:28448931-28448950 | None:intergenic | 30.0% | |
CCAAACTATGTAATCCATTA+GGG | + | chr4.3:28449083-28449102 | None:intergenic | 30.0% | |
GAAAAAACCAAAGCAAAACA+AGG | + | chr4.3:28447861-28447880 | None:intergenic | 30.0% | |
GCATACGTGTATAAAAACAT+TGG | + | chr4.3:28448462-28448481 | None:intergenic | 30.0% | |
GTAAGAAATGTCAAAGATAC+TGG | - | chr4.3:28448941-28448960 | MS.gene96790:intron | 30.0% | |
TAACTTACTGTGTACACAAA+AGG | + | chr4.3:28448583-28448602 | None:intergenic | 30.0% | |
TCAATCATATGAAACCTTCA+TGG | + | chr4.3:28447514-28447533 | None:intergenic | 30.0% | |
TCATCAAATCTAAGTGTCTT+TGG | + | chr4.3:28449678-28449697 | None:intergenic | 30.0% | |
TCTATGAGAATCCATATATG+AGG | - | chr4.3:28448290-28448309 | MS.gene96790:CDS | 30.0% | |
! | AATTTTAAGCGCAAAGTGAA+AGG | + | chr4.3:28448270-28448289 | None:intergenic | 30.0% |
! | CGACTTGAACTAAACTATTT+TGG | - | chr4.3:28448009-28448028 | MS.gene96790:CDS | 30.0% |
! | GTAATTAGTTCTTTCCTTGA+TGG | + | chr4.3:28448643-28448662 | None:intergenic | 30.0% |
! | TAGAATGCTAATGGATAGTT+TGG | + | chr4.3:28449432-28449451 | None:intergenic | 30.0% |
!! | CCTAATGGATTACATAGTTT+GGG | - | chr4.3:28449081-28449100 | MS.gene96790:intron | 30.0% |
!! | TCATTTTCAGGCTTTTCTTT+TGG | + | chr4.3:28449624-28449643 | None:intergenic | 30.0% |
!! | TGTTTTTATACACGTATGCT+CGG | - | chr4.3:28448490-28448509 | MS.gene96790:CDS | 30.0% |
!!! | TGTTATTTTGACACAGAACA+AGG | + | chr4.3:28448062-28448081 | None:intergenic | 30.0% |
!!! | TTGCCTTGATTGAAGTTTTT+TGG | - | chr4.3:28447973-28447992 | MS.gene96790:CDS | 30.0% |
AATGATCACTCAATTGGAGT+TGG | - | chr4.3:28449240-28449259 | MS.gene96790:intron | 35.0% | |
ACAATGAGAAATGTTCCTGT+TGG | - | chr4.3:28448976-28448995 | MS.gene96790:intron | 35.0% | |
ACAGAACAAGGACATGAATA+TGG | + | chr4.3:28448050-28448069 | None:intergenic | 35.0% | |
ACTGCTTAAGAAAAATGGGT+TGG | + | chr4.3:28447591-28447610 | None:intergenic | 35.0% | |
ACTGGAGTATAGAATGCTAA+TGG | + | chr4.3:28449441-28449460 | None:intergenic | 35.0% | |
AGGGAAAATGATCACTCAAT+TGG | - | chr4.3:28449234-28449253 | MS.gene96790:intron | 35.0% | |
ATCATGCAAGTTCGTATAGT+AGG | - | chr4.3:28449214-28449233 | MS.gene96790:intron | 35.0% | |
ATTCCATGGATAAGGCAAAA+AGG | + | chr4.3:28449379-28449398 | None:intergenic | 35.0% | |
ATTCGATCCAATTTCACTGA+TGG | + | chr4.3:28447785-28447804 | None:intergenic | 35.0% | |
ATTGCAGAATTCCATGGATA+AGG | + | chr4.3:28449387-28449406 | None:intergenic | 35.0% | |
CCCAAACTATGTAATCCATT+AGG | + | chr4.3:28449084-28449103 | None:intergenic | 35.0% | |
GCTAAACTTAATTCCCCTAA+TGG | - | chr4.3:28449066-28449085 | MS.gene96790:intron | 35.0% | |
GGAATTGCTGAAATTCTCAA+TGG | - | chr4.3:28447663-28447682 | MS.gene96790:CDS | 35.0% | |
GGATTACATAGTTTGGGAAA+TGG | - | chr4.3:28449087-28449106 | MS.gene96790:intron | 35.0% | |
TATTGTAGGAGACAAGAGTA+AGG | + | chr4.3:28448220-28448239 | None:intergenic | 35.0% | |
TCATGCAAGTTCGTATAGTA+GGG | - | chr4.3:28449215-28449234 | MS.gene96790:intron | 35.0% | |
TGTGGCTCAAATTCATTATG+TGG | - | chr4.3:28447756-28447775 | MS.gene96790:CDS | 35.0% | |
TTCCATGGATAAGGCAAAAA+GGG | + | chr4.3:28449378-28449397 | None:intergenic | 35.0% | |
TTCGATCCAATTTCACTGAT+GGG | + | chr4.3:28447784-28447803 | None:intergenic | 35.0% | |
TTGGTAGATAAAGGAGTTGA+AGG | - | chr4.3:28449321-28449340 | MS.gene96790:intron | 35.0% | |
! | AATGCTAATGGATAGTTTGG+TGG | + | chr4.3:28449429-28449448 | None:intergenic | 35.0% |
! | CGACATTTGATAATTCCAGA+GGG | - | chr4.3:28449042-28449061 | MS.gene96790:intron | 35.0% |
! | TCGACATTTGATAATTCCAG+AGG | - | chr4.3:28449041-28449060 | MS.gene96790:intron | 35.0% |
! | TTCTTTTGGTGAATTGACTG+AGG | + | chr4.3:28449610-28449629 | None:intergenic | 35.0% |
!! | ACAAATGGGTTGGTAGATAA+AGG | - | chr4.3:28449312-28449331 | MS.gene96790:intron | 35.0% |
!! | CCCTAATGGATTACATAGTT+TGG | - | chr4.3:28449080-28449099 | MS.gene96790:intron | 35.0% |
!! | GTGCTATTGTGTTCATTTTC+AGG | + | chr4.3:28449636-28449655 | None:intergenic | 35.0% |
!!! | CATTGTTTTAGGAACCATCA+AGG | - | chr4.3:28448626-28448645 | MS.gene96790:intron | 35.0% |
!!! | TGGTTTACCTTGTTTTGCTT+TGG | - | chr4.3:28447851-28447870 | MS.gene96790:CDS | 35.0% |
AAAGCCAATTCTCTCAATGG+AGG | - | chr4.3:28449753-28449772 | MS.gene96790:intron | 40.0% | |
AATATACCATGTGTCTCACC+AGG | - | chr4.3:28449501-28449520 | MS.gene96790:intron | 40.0% | |
AATTCTGGTGGAGAAGAAGA+GGG | + | chr4.3:28447456-28447475 | None:intergenic | 40.0% | |
ACACATGGTATATTCCATGG+AGG | + | chr4.3:28449495-28449514 | None:intergenic | 40.0% | |
AGTAACTCCACCTGCATATT+GGG | - | chr4.3:28449458-28449477 | MS.gene96790:intron | 40.0% | |
AGTTCATTGTGGTCAAAGCT+TGG | - | chr4.3:28449717-28449736 | MS.gene96790:intron | 40.0% | |
AGTTTCATGCTGTATTGCAG+AGG | + | chr4.3:28447481-28447500 | None:intergenic | 40.0% | |
CTAATTACAGCACAAGACGA+TGG | - | chr4.3:28448655-28448674 | MS.gene96790:intron | 40.0% | |
CTTGGAATATGTTGCAACTG+AGG | + | chr4.3:28449354-28449373 | None:intergenic | 40.0% | |
GAATATGTTGCAACTGAGGA+GGG | + | chr4.3:28449350-28449369 | None:intergenic | 40.0% | |
GAATTAAGTTTAGCACCCTC+TGG | + | chr4.3:28449060-28449079 | None:intergenic | 40.0% | |
GACAAAGCCAATTCTCTCAA+TGG | - | chr4.3:28449750-28449769 | MS.gene96790:intron | 40.0% | |
GAGACACATGGTATATTCCA+TGG | + | chr4.3:28449498-28449517 | None:intergenic | 40.0% | |
GATGTTCAATACAGAAGCCA+TGG | + | chr4.3:28449157-28449176 | None:intergenic | 40.0% | |
GGTAAAGGACATGAATCACA+CGG | - | chr4.3:28449803-28449822 | MS.gene96790:CDS | 40.0% | |
GTGATTCATGTCCTTTACCT+TGG | + | chr4.3:28449802-28449821 | None:intergenic | 40.0% | |
GTTCATTGTGGTCAAAGCTT+GGG | - | chr4.3:28449718-28449737 | MS.gene96790:intron | 40.0% | |
TCCTACAATACTTATGCCTC+TGG | - | chr4.3:28448230-28448249 | MS.gene96790:CDS | 40.0% | |
TGACTCTGACTCCTCATATA+TGG | + | chr4.3:28448304-28448323 | None:intergenic | 40.0% | |
TGCAATACAGCATGAAACTG+AGG | - | chr4.3:28447482-28447501 | MS.gene96790:CDS | 40.0% | |
TGGATTTCAGTCCAAGGTAA+AGG | - | chr4.3:28449788-28449807 | MS.gene96790:CDS | 40.0% | |
TGTATTGCAGAGGTGAATTC+TGG | + | chr4.3:28447471-28447490 | None:intergenic | 40.0% | |
TTAAGCGCAAAGTGAAAGGT+TGG | + | chr4.3:28448266-28448285 | None:intergenic | 40.0% | |
! | ACCAGAGGCATAAGTATTGT+AGG | + | chr4.3:28448234-28448253 | None:intergenic | 40.0% |
! | GTTCAATGGATTTCAGTCCA+AGG | - | chr4.3:28449782-28449801 | MS.gene96790:CDS | 40.0% |
! | TAGTTTGGTGGACAAAAGGT+AGG | + | chr4.3:28449417-28449436 | None:intergenic | 40.0% |
! | TGGATAGTTTGGTGGACAAA+AGG | + | chr4.3:28449421-28449440 | None:intergenic | 40.0% |
! | TTCCAAAGAGCTTTATCGCA+GGG | + | chr4.3:28447383-28447402 | None:intergenic | 40.0% |
!! | CGGGCATGGAATTATTTTGT+CGG | + | chr4.3:28448851-28448870 | None:intergenic | 40.0% |
!! | GGGCATGGAATTATTTTGTC+GGG | + | chr4.3:28448850-28448869 | None:intergenic | 40.0% |
!! | TGATTAACAGAAGCACTTCC+TGG | + | chr4.3:28449522-28449541 | None:intergenic | 40.0% |
AACTCCTTGCAGCTTCACTT+GGG | + | chr4.3:28449701-28449720 | None:intergenic | 45.0% | |
AAGCTGCAAGGAGTTCATTG+TGG | - | chr4.3:28449706-28449725 | MS.gene96790:intron | 45.0% | |
AGAAATGTTCCTGTTGGAGC+TGG | - | chr4.3:28448982-28449001 | MS.gene96790:intron | 45.0% | |
AGAGGGAGATGAAGAGTCAT+TGG | + | chr4.3:28447439-28447458 | None:intergenic | 45.0% | |
ATACAACCCCAATATGCAGG+TGG | + | chr4.3:28449468-28449487 | None:intergenic | 45.0% | |
ATCTACCAACCCATTTGTGC+CGG | + | chr4.3:28449310-28449329 | None:intergenic | 45.0% | |
ATTGCAGAGGTGAATTCTGG+TGG | + | chr4.3:28447468-28447487 | None:intergenic | 45.0% | |
CAATATGCAGGTGGAGTTAC+TGG | + | chr4.3:28449459-28449478 | None:intergenic | 45.0% | |
CAGTAACTCCACCTGCATAT+TGG | - | chr4.3:28449457-28449476 | MS.gene96790:intron | 45.0% | |
CATGGTATATTCCATGGAGG+TGG | + | chr4.3:28449492-28449511 | None:intergenic | 45.0% | |
CTGCGATAAAGCTCTTTGGA+AGG | - | chr4.3:28447382-28447401 | MS.gene96790:CDS | 45.0% | |
CTTGAGTGTTTCCCCAAAGT+CGG | + | chr4.3:28449570-28449589 | None:intergenic | 45.0% | |
GAATTCTCGGTTTCAGCTGA+TGG | + | chr4.3:28448757-28448776 | None:intergenic | 45.0% | |
GAATTCTGGTGGAGAAGAAG+AGG | + | chr4.3:28447457-28447476 | None:intergenic | 45.0% | |
GAGAGCTCTTAAATCCTCAG+TGG | + | chr4.3:28448695-28448714 | None:intergenic | 45.0% | |
GAGATGAAGAGTCATTGGCA+GGG | + | chr4.3:28447434-28447453 | None:intergenic | 45.0% | |
GGAATATGTTGCAACTGAGG+AGG | + | chr4.3:28449351-28449370 | None:intergenic | 45.0% | |
GGATAAGGCAAAAAGGGACT+TGG | + | chr4.3:28449372-28449391 | None:intergenic | 45.0% | |
GTAACTCCACCTGCATATTG+GGG | - | chr4.3:28449459-28449478 | MS.gene96790:intron | 45.0% | |
GTGGTTCCCATCAGTGAAAT+TGG | - | chr4.3:28447775-28447794 | MS.gene96790:CDS | 45.0% | |
GTTTCAGCTGATGGAGTCTT+AGG | + | chr4.3:28448748-28448767 | None:intergenic | 45.0% | |
TCAGATAGAAAAGGCCACAC+CGG | - | chr4.3:28449288-28449307 | MS.gene96790:intron | 45.0% | |
TGTCAAAGATACTGGACTGC+AGG | - | chr4.3:28448949-28448968 | MS.gene96790:intron | 45.0% | |
TTGAGTGTTTCCCCAAAGTC+GGG | + | chr4.3:28449569-28449588 | None:intergenic | 45.0% | |
! | AATGGAGGAGGCATGTTCAA+TGG | - | chr4.3:28449768-28449787 | MS.gene96790:CDS | 45.0% |
! | CTTCCAAAGAGCTTTATCGC+AGG | + | chr4.3:28447384-28447403 | None:intergenic | 45.0% |
! | GACTTTGGGGAAACACTCAA+GGG | - | chr4.3:28449569-28449588 | MS.gene96790:intron | 45.0% |
! | GTCCCTTTTTGCCTTATCCA+TGG | - | chr4.3:28449373-28449392 | MS.gene96790:intron | 45.0% |
! | TCTTACAAAAATGACGGGGC+TGG | + | chr4.3:28448927-28448946 | None:intergenic | 45.0% |
! | TTTGGTGGACAAAAGGTAGG+AGG | + | chr4.3:28449414-28449433 | None:intergenic | 45.0% |
!! | GAAGCCATGGTGTTACAAAG+CGG | + | chr4.3:28449144-28449163 | None:intergenic | 45.0% |
!! | ATAATATTTAATATATTATG+TGG | - | chr4.3:28447831-28447850 | MS.gene96790:CDS | 5.0% |
AACTGAGGTACGTGCCATGA+AGG | - | chr4.3:28447497-28447516 | MS.gene96790:CDS | 50.0% | |
ATGACCCAAGTGAAGCTGCA+AGG | - | chr4.3:28449694-28449713 | MS.gene96790:intron | 50.0% | |
CAAAGATACTGGACTGCAGG+AGG | - | chr4.3:28448952-28448971 | MS.gene96790:intron | 50.0% | |
CTCAGTTCTGTCCCGACTTT+GGG | - | chr4.3:28449555-28449574 | MS.gene96790:intron | 50.0% | |
GAACTCCTTGCAGCTTCACT+TGG | + | chr4.3:28449702-28449721 | None:intergenic | 50.0% | |
GACCCTGCGATAAAGCTCTT+TGG | - | chr4.3:28447378-28447397 | MS.gene96790:CDS | 50.0% | |
GCCAATTCTCTCAATGGAGG+AGG | - | chr4.3:28449756-28449775 | MS.gene96790:intron | 50.0% | |
GCCTCCTCCATTGAGAGAAT+TGG | + | chr4.3:28449760-28449779 | None:intergenic | 50.0% | |
GGAGATGAAGAGTCATTGGC+AGG | + | chr4.3:28447435-28447454 | None:intergenic | 50.0% | |
GGCATACAACCCCAATATGC+AGG | + | chr4.3:28449471-28449490 | None:intergenic | 50.0% | |
GGGATGATCAGTGGAAGAAG+CGG | + | chr4.3:28447414-28447433 | None:intergenic | 50.0% | |
GTGTCCATGCTATTGCATCG+CGG | + | chr4.3:28448871-28448890 | None:intergenic | 50.0% | |
TCAGCTGATGGAGTCTTAGG+AGG | + | chr4.3:28448745-28448764 | None:intergenic | 50.0% | |
TCAGTTCTGTCCCGACTTTG+GGG | - | chr4.3:28449556-28449575 | MS.gene96790:intron | 50.0% | |
TCATTGGCAGGGATGATCAG+TGG | + | chr4.3:28447423-28447442 | None:intergenic | 50.0% | |
TCCTCCGCTTTGTAACACCA+TGG | - | chr4.3:28449137-28449156 | MS.gene96790:intron | 50.0% | |
TCTCAGTTCTGTCCCGACTT+TGG | - | chr4.3:28449554-28449573 | MS.gene96790:intron | 50.0% | |
TGTCCATGCTATTGCATCGC+GGG | + | chr4.3:28448870-28448889 | None:intergenic | 50.0% | |
TTGGGGAAACACTCAAGGGA+TGG | - | chr4.3:28449573-28449592 | MS.gene96790:intron | 50.0% | |
! | CGACTTTGGGGAAACACTCA+AGG | - | chr4.3:28449568-28449587 | MS.gene96790:intron | 50.0% |
!! | ATCCTCAGTGGTTTGTTGCG+AGG | + | chr4.3:28448683-28448702 | None:intergenic | 50.0% |
!! | GGAGGCATTGCAGAATTCCA+TGG | + | chr4.3:28449393-28449412 | None:intergenic | 50.0% |
!! | GGTTGGTGAATTCACACCAG+AGG | + | chr4.3:28448249-28448268 | None:intergenic | 50.0% |
AAAGGCCACACCGGCACAAA+TGG | - | chr4.3:28449297-28449316 | MS.gene96790:intron | 55.0% | |
AAGGCCACACCGGCACAAAT+GGG | - | chr4.3:28449298-28449317 | MS.gene96790:intron | 55.0% | |
AGCCTCGCAACAAACCACTG+AGG | - | chr4.3:28448678-28448697 | MS.gene96790:intron | 55.0% | |
ATGCCCGCGATGCAATAGCA+TGG | - | chr4.3:28448864-28448883 | MS.gene96790:intron | 55.0% | |
ATGCTATTGCATCGCGGGCA+TGG | + | chr4.3:28448865-28448884 | None:intergenic | 55.0% | |
GCACTTCCTGGTGAGACACA+TGG | + | chr4.3:28449510-28449529 | None:intergenic | 55.0% | |
GCTGATGTATGCCAACCCTG+CGG | - | chr4.3:28449839-28449858 | MS.gene96790:CDS | 55.0% | |
GGTGGACAAAAGGTAGGAGG+AGG | + | chr4.3:28449411-28449430 | None:intergenic | 55.0% | |
! | GCAGGGTTGGCATACATCAG+CGG | + | chr4.3:28449840-28449859 | None:intergenic | 55.0% |
!! | GCCATGGTGTTACAAAGCGG+AGG | + | chr4.3:28449141-28449160 | None:intergenic | 55.0% |
CCACACCGGCACAAATGGGT+TGG | - | chr4.3:28449302-28449321 | MS.gene96790:intron | 60.0% | |
GAGACCGCGATAAAGCCGCA+GGG | + | chr4.3:28449857-28449876 | None:intergenic | 60.0% | |
GCGGTCTCGTACCTTCCATG+AGG | - | chr4.3:28449869-28449888 | MS.gene96790:CDS | 60.0% | |
GGGGTTGTATGCCACCTCCA+TGG | - | chr4.3:28449478-28449497 | MS.gene96790:intron | 60.0% | |
! | CCAACCCATTTGTGCCGGTG+TGG | + | chr4.3:28449305-28449324 | None:intergenic | 60.0% |
! | CCAACCCTGCGGCTTTATCG+CGG | - | chr4.3:28449850-28449869 | MS.gene96790:CDS | 60.0% |
CCGCGATAAAGCCGCAGGGT+TGG | + | chr4.3:28449853-28449872 | None:intergenic | 65.0% | |
CGAGACCGCGATAAAGCCGC+AGG | + | chr4.3:28449858-28449877 | None:intergenic | 65.0% | |
TTGCGGCGACCAGCTCCAAC+AGG | + | chr4.3:28448994-28449013 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 28447363 | 28449899 | 28447363 | ID=MS.gene96790 |
chr4.3 | mRNA | 28447363 | 28449899 | 28447363 | ID=MS.gene96790.t1;Parent=MS.gene96790 |
chr4.3 | exon | 28449759 | 28449899 | 28449759 | ID=MS.gene96790.t1.exon1;Parent=MS.gene96790.t1 |
chr4.3 | CDS | 28449759 | 28449899 | 28449759 | ID=cds.MS.gene96790.t1;Parent=MS.gene96790.t1 |
chr4.3 | exon | 28447363 | 28448625 | 28447363 | ID=MS.gene96790.t1.exon2;Parent=MS.gene96790.t1 |
chr4.3 | CDS | 28447363 | 28448625 | 28447363 | ID=cds.MS.gene96790.t1;Parent=MS.gene96790.t1 |
Gene Sequence |
Protein sequence |