AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96906


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96906.t1 MTR_1g047210 99.134 462 4 0 1 462 1 462 0.0 934
MS.gene96906.t1 MTR_4g022430 77.551 441 92 2 1 441 1 434 0.0 695
MS.gene96906.t1 MTR_4g134090 34.559 408 228 10 52 438 7 396 1.49e-59 201
MS.gene96906.t1 MTR_4g134090 34.559 408 228 10 52 438 14 403 2.31e-59 200
MS.gene96906.t1 MTR_5g098310 33.687 377 227 7 52 414 16 383 4.35e-54 186
MS.gene96906.t1 MTR_0449s0040 31.778 343 211 7 52 380 16 349 1.89e-39 145
MS.gene96906.t1 MTR_4g134090 30.534 262 145 9 52 292 7 252 3.94e-20 90.9
MS.gene96906.t1 MTR_0837s0020 35.135 111 72 0 60 170 808 918 2.56e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96906.t1 AT2G33150 84.449 463 70 2 1 462 1 462 0.0 794
MS.gene96906.t1 AT1G04710 81.596 451 74 2 1 451 1 442 0.0 745
MS.gene96906.t1 AT5G48880 71.806 454 120 3 1 450 1 450 0.0 670
MS.gene96906.t1 AT5G48880 71.806 454 120 3 1 450 1 450 0.0 670
MS.gene96906.t1 AT5G48880 71.806 454 120 3 1 450 1 450 0.0 670
MS.gene96906.t1 AT5G48880 75.862 406 96 1 47 450 2 407 0.0 646
MS.gene96906.t1 AT5G48230 36.220 381 212 9 52 414 7 374 3.73e-60 202
MS.gene96906.t1 AT5G48230 36.220 381 212 9 52 414 12 379 4.33e-60 202
MS.gene96906.t1 AT5G47720 34.595 370 216 9 84 438 45 403 1.70e-58 198
MS.gene96906.t1 AT5G47720 34.595 370 216 9 84 438 45 403 1.70e-58 198
MS.gene96906.t1 AT5G47720 34.595 370 216 9 84 438 45 403 2.27e-58 197
MS.gene96906.t1 AT5G47720 34.595 370 216 9 84 438 45 403 2.27e-58 197
MS.gene96906.t1 AT5G47720 34.595 370 216 9 84 438 52 410 3.19e-58 197

Find 116 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACGGCAATATACAAAT+TGG 0.219351 1.4:+31784941 None:intergenic
CCATTGGAAGGAGGCAGTTT+TGG 0.225837 1.4:+31787315 None:intergenic
TACCCATTCTTGGTGTATTC+AGG 0.235250 1.4:-31786670 MS.gene96906:intron
CTGATGTAGCTGCTGCTATA+AGG 0.320959 1.4:-31787661 MS.gene96906:CDS
TTCACAGGCTTCAGCATGTT+TGG 0.320972 1.4:-31788335 MS.gene96906:intron
GTAAATACCTTGGTGGAAAC+TGG 0.328197 1.4:+31787062 None:intergenic
ATTGTTGTCGGTTCTGTATT+GGG 0.330737 1.4:-31787881 MS.gene96906:CDS
GAAAAGGTTGTCCCCTTTGC+GGG 0.341498 1.4:+31784167 None:intergenic
GCGGCTGCTGCTACTGCTGC+TGG 0.346344 1.4:-31787107 MS.gene96906:CDS
CGTGGCAAGGACTGCCGATA+TGG 0.352522 1.4:-31784369 MS.gene96906:CDS
AATGGCAATTGGGCATCCTT+TGG 0.353600 1.4:-31784875 MS.gene96906:CDS
TATCACAGGACAGCTGCATT+TGG 0.360508 1.4:-31788295 MS.gene96906:CDS
ATCACAGGACAGCTGCATTT+GGG 0.364031 1.4:-31788294 MS.gene96906:CDS
CCTGCAGCTTTCACGGCAAC+TGG 0.367782 1.4:+31785099 None:intergenic
CTCTAGACCTGCAGCTTTCA+CGG 0.369475 1.4:+31785092 None:intergenic
AACGGAGGTGCAATGGCAAT+TGG 0.374137 1.4:-31784886 MS.gene96906:CDS
TTTAGGTATTGGTGCTGGTT+TGG 0.375411 1.4:-31787541 MS.gene96906:intron
GAAAATGTTGCCAATCGCTT+TGG 0.377320 1.4:-31787281 MS.gene96906:CDS
CAAAAGGGGCTACCCATTCT+TGG 0.386260 1.4:-31786680 MS.gene96906:CDS
TATTGTTGTCGGTTCTGTAT+TGG 0.386914 1.4:-31787882 MS.gene96906:CDS
GTTAACAGACAATGTTCATC+TGG 0.392525 1.4:-31787698 MS.gene96906:CDS
GCAACTGGAATTGCAGCAGC+TGG 0.400400 1.4:+31785114 None:intergenic
CTAATTCTAGCGAGCATCCT+TGG 0.404438 1.4:+31784140 None:intergenic
GGGCATCCTTTGGGAGCAAC+AGG 0.407923 1.4:-31784865 MS.gene96906:intron
ATGGCAATTGGGCATCCTTT+GGG 0.407928 1.4:-31784874 MS.gene96906:CDS
ATAAATAAAACCTTCAAAAC+AGG 0.414760 1.4:+31788038 None:intergenic
TTGTGAGCAGGTACTGGAAT+GGG 0.418268 1.4:-31784240 MS.gene96906:intron
GTCACCATTTCCGTTGATGA+TGG 0.423720 1.4:-31786933 MS.gene96906:CDS
AAGAAGTATTGCAATGCAAA+AGG 0.426968 1.4:-31786696 MS.gene96906:CDS
GTCGGTTCTGTATTGGGAGC+TGG 0.433413 1.4:-31787875 MS.gene96906:CDS
GTTACGGCAATATACAAATT+GGG 0.434539 1.4:+31784942 None:intergenic
CCAATCGCTTTGGAGTTTCA+AGG 0.435048 1.4:-31787271 MS.gene96906:CDS
AATTCCATCATCAACGGAAA+TGG 0.437634 1.4:+31786929 None:intergenic
CCTTGAAACTCCAAAGCGAT+TGG 0.443317 1.4:+31787271 None:intergenic
TGGTGTTGATCCTGCCATCA+TGG 0.449169 1.4:-31785145 MS.gene96906:CDS
TGATGTAGCTGCTGCTATAA+GGG 0.452992 1.4:-31787660 MS.gene96906:CDS
CAAAACTGCCTCCTTCCAAT+GGG 0.459453 1.4:-31787314 MS.gene96906:CDS
AGCTTTGCAATGCCCGCAAA+GGG 0.463134 1.4:-31784179 MS.gene96906:CDS
ACACAGCTTTAAGCTTTCCT+AGG 0.466091 1.4:+31786883 None:intergenic
ACAGGAGCTAGGATATCATC+AGG 0.471003 1.4:+31788056 None:intergenic
AGATGTGGAAGATGAATCAT+TGG 0.474876 1.4:+31789081 None:intergenic
ATCCAGAGACTGTGCCGGTT+AGG 0.477289 1.4:-31787724 MS.gene96906:intron
TGCCATTGGATTAGTTGTCA+TGG 0.478121 1.4:+31787515 None:intergenic
AACTTGAACCCAAGTGAAGT+TGG 0.479113 1.4:-31787908 MS.gene96906:CDS
ACAATATCTCCAACTTCACT+TGG 0.482345 1.4:+31787899 None:intergenic
TCACAAAAGATCAATGTTAA+CGG 0.488907 1.4:-31784904 MS.gene96906:CDS
CAGGCTTCAGCATGTTTGGC+GGG 0.489612 1.4:-31788331 MS.gene96906:CDS
TGTCTGTTAACTGTCCTAAC+CGG 0.490107 1.4:+31787710 None:intergenic
GAAGTTGGAGATATTGTTGT+CGG 0.492011 1.4:-31787893 MS.gene96906:CDS
AGAAGTATTGCAATGCAAAA+GGG 0.494786 1.4:-31786695 MS.gene96906:CDS
CCAAAACTGCCTCCTTCCAA+TGG 0.495559 1.4:-31787315 MS.gene96906:CDS
ACGGAGGTGCAATGGCAATT+GGG 0.495713 1.4:-31784885 MS.gene96906:CDS
CCAGTTGCCGTGAAAGCTGC+AGG 0.496618 1.4:-31785099 MS.gene96906:CDS
ACTGATCCATCCCATGCCAT+TGG 0.498873 1.4:+31787501 None:intergenic
GGGCCAACACCCATGATGGC+AGG 0.504707 1.4:+31785135 None:intergenic
GTACCTGAATACACCAAGAA+TGG 0.508482 1.4:+31786667 None:intergenic
GTAGCTGCTGCTATAAGGGC+TGG 0.512492 1.4:-31787656 MS.gene96906:CDS
ACATGGATATTACTCCATAT+CGG 0.516143 1.4:+31784355 None:intergenic
GTATATTGCCGTAACAAGCT+AGG 0.516878 1.4:-31784934 MS.gene96906:CDS
AGGTCAGATAATGATGCGTT+GGG 0.517353 1.4:+31786903 None:intergenic
ACAGGCTTCAGCATGTTTGG+CGG 0.517549 1.4:-31788332 MS.gene96906:intron
TACCTGAATACACCAAGAAT+GGG 0.522492 1.4:+31786668 None:intergenic
TGTAGGAGTTTCGTCGCAGT+TGG 0.529855 1.4:-31785165 MS.gene96906:intron
GATCCTGCCATCATGGGTGT+TGG 0.532689 1.4:-31785138 MS.gene96906:CDS
AAAGACGGAACCACCACTGC+TGG 0.533346 1.4:-31786855 MS.gene96906:intron
AATCAAGTCCTAGCTTGTTA+CGG 0.534024 1.4:+31784926 None:intergenic
AACTTCACTTGGGTTCAAGT+TGG 0.534134 1.4:+31787910 None:intergenic
GAGCATCCTTGGATAAGAAA+AGG 0.536509 1.4:+31784151 None:intergenic
AGCTGGGCCAACACCCATGA+TGG 0.538149 1.4:+31785131 None:intergenic
CAACTGGAATTGCAGCAGCT+GGG 0.538167 1.4:+31785115 None:intergenic
TGAAATGAAGCGACGTGGCA+AGG 0.538544 1.4:-31784382 MS.gene96906:CDS
CAGAGGTAATCCCCATTGGA+AGG 0.540583 1.4:+31787303 None:intergenic
AGAAAAGGTTGTCCCCTTTG+CGG 0.541326 1.4:+31784166 None:intergenic
GAAACAAACATTGAGAGATG+TGG 0.541636 1.4:+31789066 None:intergenic
TAGGTCAGATAATGATGCGT+TGG 0.542770 1.4:+31786902 None:intergenic
GGTGTTGATCCTGCCATCAT+GGG 0.545097 1.4:-31785144 MS.gene96906:CDS
CTCCAGCACCATCACTCACC+TGG 0.557295 1.4:+31786735 None:intergenic
AAACCTTCAAAACAGGAGCT+AGG 0.557984 1.4:+31788045 None:intergenic
GTTGATAGGTTGAGTCTCAC+AGG 0.558743 1.4:-31787133 MS.gene96906:intron
CAATGTTAACGGAGGTGCAA+TGG 0.560069 1.4:-31784893 MS.gene96906:CDS
GAAATTGGTAAATACCTTGG+TGG 0.564842 1.4:+31787055 None:intergenic
TGATCTTATACCAGCAGTGG+TGG 0.567622 1.4:+31786845 None:intergenic
AGCCAGGTGAGTGATGGTGC+TGG 0.568071 1.4:-31786737 MS.gene96906:CDS
GACAACTAATCCAATGGCAT+GGG 0.568175 1.4:-31787511 MS.gene96906:CDS
ATTGTGAGCAGGTACTGGAA+TGG 0.569253 1.4:-31784241 MS.gene96906:intron
TGACAACTAATCCAATGGCA+TGG 0.569744 1.4:-31787512 MS.gene96906:CDS
TTATGATCTTATACCAGCAG+TGG 0.573440 1.4:+31786842 None:intergenic
GAGCTTTGCAATGCCCGCAA+AGG 0.573513 1.4:-31784180 MS.gene96906:CDS
TATGTGTTTGCAGTGCATAT+CGG 0.578334 1.4:-31788124 MS.gene96906:intron
AAGAGCTAGTGAATGTCGTA+TGG 0.581957 1.4:-31787846 MS.gene96906:CDS
ATCCATGACAACTAATCCAA+TGG 0.583716 1.4:-31787517 MS.gene96906:CDS
GAGACAGTGCTGCTTATCAC+AGG 0.584230 1.4:-31788309 MS.gene96906:CDS
TGTGAGCAGGTACTGGAATG+GGG 0.588396 1.4:-31784239 MS.gene96906:intron
TCACAGGACAGCTGCATTTG+GGG 0.588788 1.4:-31788293 MS.gene96906:CDS
GGAGTAATATCCATGTGCAT+TGG 0.596790 1.4:-31784348 MS.gene96906:intron
TATATACCTGTTGCTCCCAA+AGG 0.599601 1.4:+31784859 None:intergenic
GAAGTATTGCAATGCAAAAG+GGG 0.600485 1.4:-31786694 MS.gene96906:CDS
AATTCTAGCCAGGTGAGTGA+TGG 0.600677 1.4:-31786743 MS.gene96906:CDS
CAATATCTCCAACTTCACTT+GGG 0.604564 1.4:+31787900 None:intergenic
ACTAATCCAATGGCATGGGA+TGG 0.605555 1.4:-31787507 MS.gene96906:CDS
TCCCCATCCAGAGACTGTGC+CGG 0.611728 1.4:-31787729 MS.gene96906:intron
CTTTGCAAAGCTAAACGTGG+TGG 0.621994 1.4:-31788095 MS.gene96906:CDS
TTAACAGACAATGTTCATCT+GGG 0.630670 1.4:-31787697 MS.gene96906:CDS
GGGTCGAATTCCATCATCAA+CGG 0.642050 1.4:+31786923 None:intergenic
GTGAGCAGGTACTGGAATGG+GGG 0.647925 1.4:-31784238 MS.gene96906:intron
AGTGAGTGTACCAATGCACA+TGG 0.653800 1.4:+31784338 None:intergenic
AGGTAATCCCCATTGGAAGG+AGG 0.656135 1.4:+31787306 None:intergenic
AATCATTCCAGTTTCCACCA+AGG 0.667285 1.4:-31787069 MS.gene96906:intron
GGTTGAGTCTCACAGGCGAG+CGG 0.670559 1.4:-31787126 MS.gene96906:CDS
CAAAAGATCAATGTTAACGG+AGG 0.676322 1.4:-31784901 MS.gene96906:CDS
AAAACTGCCTCCTTCCAATG+GGG 0.685024 1.4:-31787313 MS.gene96906:CDS
GCTTTGCAATGCCCGCAAAG+GGG 0.689691 1.4:-31784178 MS.gene96906:CDS
CAGGAGCTAGGATATCATCA+GGG 0.699408 1.4:+31788057 None:intergenic
TTGCATGAAATGAAGCGACG+TGG 0.723164 1.4:-31784387 MS.gene96906:CDS
AACGCATCATTATCTGACCT+AGG 0.725641 1.4:-31786900 MS.gene96906:CDS
GCTCTTTGCAAAGCTAAACG+TGG 0.726080 1.4:-31788098 MS.gene96906:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTAAATAATTATATAG+GGG + chr1.4:31787417-31787436 None:intergenic 10.0%
!! AATAAACAATGTTAACTATA+TGG + chr1.4:31789026-31789045 None:intergenic 15.0%
!! ATTAATTACGGAATATAATA+GGG - chr1.4:31787440-31787459 MS.gene96906:intron 15.0%
!! TATTAATTACGGAATATAAT+AGG - chr1.4:31787439-31787458 MS.gene96906:intron 15.0%
!!! ACAATTATATAATGCATTTT+GGG + chr1.4:31787049-31787068 None:intergenic 15.0%
!!! AGTATATATTCATGTTTTTT+TGG + chr1.4:31786858-31786877 None:intergenic 15.0%
!!! TTCTATAAAAGTATATGAAT+TGG - chr1.4:31784721-31784740 MS.gene96906:intron 15.0%
!! AAATAAAACCAGTACTTATA+TGG + chr1.4:31786948-31786967 None:intergenic 20.0%
!! AAATGCATTATATAATTGTG+TGG - chr1.4:31787050-31787069 MS.gene96906:intron 20.0%
!! AAGATTCAATAACAATTGTT+CGG + chr1.4:31788072-31788091 None:intergenic 20.0%
!! AATACAATATACCTTTATAG+TGG + chr1.4:31786261-31786280 None:intergenic 20.0%
!! AATCTAAAAATCATCTTTGT+TGG - chr1.4:31788097-31788116 MS.gene96906:CDS 20.0%
!! ATAAATAAAACCTTCAAAAC+AGG + chr1.4:31785256-31785275 None:intergenic 20.0%
!! CCTAAACAAAAAATAGTTAA+AGG + chr1.4:31785736-31785755 None:intergenic 20.0%
!! CTTAAAATAATACCTCTAAA+GGG - chr1.4:31785899-31785918 MS.gene96906:intron 20.0%
!! GAAAAAGACATGAATATATT+AGG + chr1.4:31788715-31788734 None:intergenic 20.0%
!! GAACTAAAATATCATAAACT+AGG - chr1.4:31788793-31788812 MS.gene96906:intron 20.0%
!! GAATATAGTTTAATGTTTGT+TGG - chr1.4:31784753-31784772 MS.gene96906:intron 20.0%
!! GTTATATTAGAAAGAATTTG+AGG + chr1.4:31786490-31786509 None:intergenic 20.0%
!! TATGGAAAAAAAGAATATCA+AGG + chr1.4:31787604-31787623 None:intergenic 20.0%
!! TCTTAAAATAATACCTCTAA+AGG - chr1.4:31785898-31785917 MS.gene96906:intron 20.0%
!! TGTGTTTATGTATGTATATA+TGG - chr1.4:31784833-31784852 MS.gene96906:intron 20.0%
!! TTTATTTGGTATACTTGAAA+AGG + chr1.4:31787627-31787646 None:intergenic 20.0%
!!! AACAAAGATGATTTTTAGAT+TGG + chr1.4:31788098-31788117 None:intergenic 20.0%
!!! ACTATTTTTTGTTTAGGTAT+TGG - chr1.4:31785739-31785758 MS.gene96906:intron 20.0%
!!! ATGAAATGTGTGATAATTTT+TGG - chr1.4:31786777-31786796 MS.gene96906:intron 20.0%
!!! CACAATTATATAATGCATTT+TGG + chr1.4:31787050-31787069 None:intergenic 20.0%
!!! CCTTTAACTATTTTTTGTTT+AGG - chr1.4:31785733-31785752 MS.gene96906:intron 20.0%
!!! GAATATGAACATATACTTTT+TGG + chr1.4:31784432-31784451 None:intergenic 20.0%
!!! TATATATGATTTGAGTTTTG+AGG - chr1.4:31784603-31784622 MS.gene96906:intron 20.0%
!!! TATTAGGTTATTTTAGCTAT+AGG + chr1.4:31788699-31788718 None:intergenic 20.0%
!!! TGAAAAAATTAATTTGGCAA+AGG + chr1.4:31785856-31785875 None:intergenic 20.0%
!!! TTATTTTATTTTTGGGATGT+AGG - chr1.4:31788859-31788878 MS.gene96906:intron 20.0%
!!! TTTACCTTATCTTTTCTATT+GGG - chr1.4:31787343-31787362 MS.gene96906:intron 20.0%
!!! TTTATAAACCGATTTCAAAT+TGG - chr1.4:31786684-31786703 MS.gene96906:CDS 20.0%
!!! TTTTACCTTATCTTTTCTAT+TGG - chr1.4:31787342-31787361 MS.gene96906:intron 20.0%
! AAAAACAGGAAAATTACTCT+AGG + chr1.4:31785820-31785839 None:intergenic 25.0%
! AAACACACATAAAATCCAAA+AGG + chr1.4:31784325-31784344 None:intergenic 25.0%
! AAATGGAGAGAAAAGAAAAT+AGG + chr1.4:31788024-31788043 None:intergenic 25.0%
! AACACACATAAAATCCAAAA+GGG + chr1.4:31784324-31784343 None:intergenic 25.0%
! AAGTTTAACCATATAAGTAC+TGG - chr1.4:31786937-31786956 MS.gene96906:CDS 25.0%
! ACTAGGTAACAAATAATAAC+TGG - chr1.4:31788810-31788829 MS.gene96906:intron 25.0%
! AGTATATGTTCATATTCATG+TGG - chr1.4:31784435-31784454 MS.gene96906:intron 25.0%
! ATTGATATTTCATCTTCTGT+TGG - chr1.4:31787898-31787917 MS.gene96906:CDS 25.0%
! CGCAAAATATATCATATTTG+TGG - chr1.4:31787163-31787182 MS.gene96906:intron 25.0%
! GAAGTTAGTACATTAACAAA+TGG + chr1.4:31788299-31788318 None:intergenic 25.0%
! TAGATACATGAAAGTTAATC+TGG + chr1.4:31786884-31786903 None:intergenic 25.0%
! TCAATCTCACATACTTTATT+TGG + chr1.4:31787641-31787660 None:intergenic 25.0%
! TCACAAAAGAACCAATTAAA+AGG + chr1.4:31784291-31784310 None:intergenic 25.0%
! TCACAAAAGATCAATGTTAA+CGG - chr1.4:31788387-31788406 MS.gene96906:intron 25.0%
! TGGTAACTTTCAAAACAAAA+AGG + chr1.4:31788548-31788567 None:intergenic 25.0%
! TGTTTGGATATTCATATTGA+TGG - chr1.4:31784401-31784420 MS.gene96906:CDS 25.0%
! TTATATCATGTTAAAGAGCA+GGG + chr1.4:31786733-31786752 None:intergenic 25.0%
! TTATCAGCAAGATTTAGTTA+TGG + chr1.4:31786134-31786153 None:intergenic 25.0%
! TTGAAATGCATATATGTATG+TGG + chr1.4:31788838-31788857 None:intergenic 25.0%
! TTGCTGATAATATTGTTGAT+AGG - chr1.4:31786144-31786163 MS.gene96906:intron 25.0%
! TTGGAAAAATATCAAATCAG+TGG - chr1.4:31786796-31786815 MS.gene96906:intron 25.0%
! TTTACCAATTTCCACTATAA+AGG - chr1.4:31786247-31786266 MS.gene96906:intron 25.0%
! TTTATATCATGTTAAAGAGC+AGG + chr1.4:31786734-31786753 None:intergenic 25.0%
!! ACTTGAATTGATTCAACATA+AGG + chr1.4:31786910-31786929 None:intergenic 25.0%
!! GTATATTGTATTTTCCTTTC+CGG - chr1.4:31786269-31786288 MS.gene96906:intron 25.0%
!! TATACCTTTATAGTGGAAAT+TGG + chr1.4:31786254-31786273 None:intergenic 25.0%
!! TCAATGATTTGCATATATTC+AGG - chr1.4:31788317-31788336 MS.gene96906:CDS 25.0%
!! TGATTTTATCGCCTTTTAAT+TGG - chr1.4:31784277-31784296 MS.gene96906:intron 25.0%
!! TTATCCTTGTCTTTTTGAAT+TGG - chr1.4:31784639-31784658 MS.gene96906:intron 25.0%
!! TTGTTGGAATATGAATTTTC+AGG - chr1.4:31784769-31784788 MS.gene96906:intron 25.0%
!!! CGATCTTTTTGAAATTAATG+AGG - chr1.4:31788233-31788252 MS.gene96906:intron 25.0%
!!! GTGTTGGTTTGATAAAAATA+AGG - chr1.4:31784576-31784595 MS.gene96906:intron 25.0%
!!! TGTGTTTTTGTTTTCTTGAT+TGG - chr1.4:31784338-31784357 MS.gene96906:intron 25.0%
!!! TTATATAATGCATTTTGGGT+TGG + chr1.4:31787045-31787064 None:intergenic 25.0%
AAAGCTGTGTTCAAAAAAGA+CGG - chr1.4:31786421-31786440 MS.gene96906:intron 30.0%
AACGTGAACTAAAGTAGTAA+AGG + chr1.4:31785290-31785309 None:intergenic 30.0%
AATATCAAATGCCACGATAA+AGG + chr1.4:31787111-31787130 None:intergenic 30.0%
ACAAATTATCTAGACATACC+AGG + chr1.4:31785491-31785510 None:intergenic 30.0%
ACATATTCAAACCAAAGCAA+AGG + chr1.4:31784816-31784835 None:intergenic 30.0%
ACATGGATATTACTCCATAT+CGG + chr1.4:31788939-31788958 None:intergenic 30.0%
ATATATATCGTCTCGATCAT+TGG - chr1.4:31784499-31784518 MS.gene96906:intron 30.0%
ATATCAAATGCCACGATAAA+GGG + chr1.4:31787110-31787129 None:intergenic 30.0%
CATATTCAAACCAAAGCAAA+GGG + chr1.4:31784815-31784834 None:intergenic 30.0%
GAATATAATAGGGCTATTGA+TGG - chr1.4:31787450-31787469 MS.gene96906:intron 30.0%
GAGAAAAGGAAAATAAGACA+AGG + chr1.4:31788273-31788292 None:intergenic 30.0%
GAGATAAAGTTAGGAAAAAC+AGG + chr1.4:31785834-31785853 None:intergenic 30.0%
GTAAAAAGGAGAAAGGAAAA+CGG - chr1.4:31787772-31787791 MS.gene96906:intron 30.0%
GTTACGGCAATATACAAATT+GGG + chr1.4:31788352-31788371 None:intergenic 30.0%
GTTTATTGTAAATTGTGAGC+AGG - chr1.4:31789039-31789058 MS.gene96906:intron 30.0%
TATTCATGTGGATTCTATTG+TGG - chr1.4:31784447-31784466 MS.gene96906:intron 30.0%
TCATTGGATGAAAAAGAAGA+AGG + chr1.4:31784197-31784216 None:intergenic 30.0%
TCGGTTTATAAATATCGTCA+CGG + chr1.4:31786676-31786695 None:intergenic 30.0%
TCTAAATCAGAACCTAATAC+CGG + chr1.4:31786291-31786310 None:intergenic 30.0%
TCTACCCAATAGAAAAGATA+AGG + chr1.4:31787350-31787369 None:intergenic 30.0%
TGTTACGGCAATATACAAAT+TGG + chr1.4:31788353-31788372 None:intergenic 30.0%
TTAACAAATGGTGAGAGAAA+AGG + chr1.4:31788287-31788306 None:intergenic 30.0%
TTAACAGACAATGTTCATCT+GGG - chr1.4:31785594-31785613 MS.gene96906:intron 30.0%
TTAGTTGTGAAGAGGTAAAA+AGG - chr1.4:31787758-31787777 MS.gene96906:intron 30.0%
TTATAGAACCAACACAAATC+AGG + chr1.4:31784709-31784728 None:intergenic 30.0%
TTGGTATACTTGAAAAGGTA+TGG + chr1.4:31787622-31787641 None:intergenic 30.0%
TTTCTTTCCTAAACCAAACA+TGG + chr1.4:31787232-31787251 None:intergenic 30.0%
! ACAATGTGCCAATTTGAAAT+CGG + chr1.4:31786695-31786714 None:intergenic 30.0%
! ATCTTTGTTGGTTGTAATGT+AGG - chr1.4:31788109-31788128 MS.gene96906:CDS 30.0%
! GCTTTGAATTAAACTTGTTC+TGG - chr1.4:31784902-31784921 MS.gene96906:CDS 30.0%
! GGATTTTATGACATTGGTAA+GGG - chr1.4:31785656-31785675 MS.gene96906:intron 30.0%
! TACTTTTCGGTTGTTACAAA+TGG - chr1.4:31787552-31787571 MS.gene96906:intron 30.0%
! TGATTTGATGTCTGTGTTTT+AGG - chr1.4:31786524-31786543 MS.gene96906:intron 30.0%
! TGGATTTTATGACATTGGTA+AGG - chr1.4:31785655-31785674 MS.gene96906:intron 30.0%
! TGTTGAACATTTGATTTCAC+AGG - chr1.4:31784941-31784960 MS.gene96906:CDS 30.0%
! TTGAATTAAACTTGTTCTGG+TGG - chr1.4:31784905-31784924 MS.gene96906:CDS 30.0%
!! AAATACAAGTTGTTGACTTG+TGG + chr1.4:31788458-31788477 None:intergenic 30.0%
!! AAGAAGTATTGCAATGCAAA+AGG - chr1.4:31786595-31786614 MS.gene96906:intron 30.0%
!! AGAAGTATTGCAATGCAAAA+GGG - chr1.4:31786596-31786615 MS.gene96906:intron 30.0%
!! AGTATCGGTAGGAAATAAAA+TGG + chr1.4:31788041-31788060 None:intergenic 30.0%
!! ATGTGATGTCTTTTTCACTT+TGG + chr1.4:31787947-31787966 None:intergenic 30.0%
!! GAATATGAATTTTCAGGAGA+GGG - chr1.4:31784775-31784794 MS.gene96906:intron 30.0%
!! GTTTTGATCTTGAATCTGTT+TGG - chr1.4:31784385-31784404 MS.gene96906:CDS 30.0%
!! TGTTTGGAACTTTAGAGTTT+AGG + chr1.4:31787987-31788006 None:intergenic 30.0%
!!! GAGGAAATTTTTTTTGGTGT+GGG + chr1.4:31787811-31787830 None:intergenic 30.0%
!!! TTCTTGATTGGTTTTTAGCT+TGG - chr1.4:31784350-31784369 MS.gene96906:CDS 30.0%
AAAAAAATTTCCTCCTGAGG+TGG - chr1.4:31787817-31787836 MS.gene96906:intron 35.0%
AAAAATGATGCTGTAGCTCA+TGG + chr1.4:31788488-31788507 None:intergenic 35.0%
AACAAAACTGTAATGTGCCT+TGG - chr1.4:31788736-31788755 MS.gene96906:intron 35.0%
AATAACAATTGTTCGGTTGC+AGG + chr1.4:31788065-31788084 None:intergenic 35.0%
AATTCCATCATCAACGGAAA+TGG + chr1.4:31786365-31786384 None:intergenic 35.0%
ACAATATCTCCAACTTCACT+TGG + chr1.4:31785395-31785414 None:intergenic 35.0%
ACCTCTTCACAACTAAACAA+GGG + chr1.4:31787754-31787773 None:intergenic 35.0%
AGATGTGGAAGATGAATCAT+TGG + chr1.4:31784213-31784232 None:intergenic 35.0%
ATAACAATTGTTCGGTTGCA+GGG + chr1.4:31788064-31788083 None:intergenic 35.0%
ATCCATGACAACTAATCCAA+TGG - chr1.4:31785774-31785793 MS.gene96906:intron 35.0%
CAAAAGATCAATGTTAACGG+AGG - chr1.4:31788390-31788409 MS.gene96906:intron 35.0%
CAATAAAACTGTTTCCCTGA+TGG + chr1.4:31787501-31787520 None:intergenic 35.0%
CAATATCTCCAACTTCACTT+GGG + chr1.4:31785394-31785413 None:intergenic 35.0%
CACAACTAAACAAGGGAAAA+TGG + chr1.4:31787747-31787766 None:intergenic 35.0%
CCAAAAAAAATTTCCTCCTG+AGG - chr1.4:31787814-31787833 MS.gene96906:intron 35.0%
CTTTGTCTGATGAATTCGAT+GGG - chr1.4:31784543-31784562 MS.gene96906:intron 35.0%
GAAACAAACATTGAGAGATG+TGG + chr1.4:31784228-31784247 None:intergenic 35.0%
GAAATTGGTAAATACCTTGG+TGG + chr1.4:31786239-31786258 None:intergenic 35.0%
GAAGTTGGAGATATTGTTGT+CGG - chr1.4:31785398-31785417 MS.gene96906:intron 35.0%
GATGAGTAAAAGTGAAAGAG+TGG + chr1.4:31787877-31787896 None:intergenic 35.0%
GGTACCAATTCAAAAAGACA+AGG + chr1.4:31784646-31784665 None:intergenic 35.0%
GGTGTATTCAGGTACTTAAT+TGG - chr1.4:31786632-31786651 MS.gene96906:intron 35.0%
GTGGAAATTGGTAAATACCT+TGG + chr1.4:31786242-31786261 None:intergenic 35.0%
GTTAACAGACAATGTTCATC+TGG - chr1.4:31785593-31785612 MS.gene96906:intron 35.0%
TACAACACAGTGCATAAAAC+AGG + chr1.4:31787083-31787102 None:intergenic 35.0%
TACCTCTTCACAACTAAACA+AGG + chr1.4:31787755-31787774 None:intergenic 35.0%
TACCTGAATACACCAAGAAT+GGG + chr1.4:31786626-31786645 None:intergenic 35.0%
TATCAAATGCCACGATAAAG+GGG + chr1.4:31787109-31787128 None:intergenic 35.0%
TATGTGTTTGCAGTGCATAT+CGG - chr1.4:31785167-31785186 MS.gene96906:intron 35.0%
TATTTCTTACTTTGTCGTGC+AGG - chr1.4:31785934-31785953 MS.gene96906:intron 35.0%
TCTTTGTCTGATGAATTCGA+TGG - chr1.4:31784542-31784561 MS.gene96906:intron 35.0%
TGAAGAGGTAAAAAGGAGAA+AGG - chr1.4:31787765-31787784 MS.gene96906:intron 35.0%
TGATGTTGAGGTTTCATTGT+AGG - chr1.4:31785343-31785362 MS.gene96906:intron 35.0%
TGGAGAGAAAAGAAAATAGG+TGG + chr1.4:31788021-31788040 None:intergenic 35.0%
TTATGATCTTATACCAGCAG+TGG + chr1.4:31786452-31786471 None:intergenic 35.0%
TTGGCAAAGGAGATAAAGTT+AGG + chr1.4:31785843-31785862 None:intergenic 35.0%
TTTACATGAACGTGATGTTG+AGG - chr1.4:31785331-31785350 MS.gene96906:intron 35.0%
TTTGTCTGATGAATTCGATG+GGG - chr1.4:31784544-31784563 MS.gene96906:intron 35.0%
! AATCATGACCTGATTTGTGT+TGG - chr1.4:31784698-31784717 MS.gene96906:intron 35.0%
! GTATTTTCCTTTCCGGTATT+AGG - chr1.4:31786276-31786295 MS.gene96906:intron 35.0%
! TGTAACAACCGAAAAGTATG+TGG + chr1.4:31787550-31787569 None:intergenic 35.0%
! TTTCTGCTCCACATACTTTT+CGG - chr1.4:31787539-31787558 MS.gene96906:CDS 35.0%
! TTTTCGGTTGTTACAAATGG+TGG - chr1.4:31787555-31787574 MS.gene96906:intron 35.0%
!! AATCAAGTCCTAGCTTGTTA+CGG + chr1.4:31788368-31788387 None:intergenic 35.0%
!! ATTGTTGTCGGTTCTGTATT+GGG - chr1.4:31785410-31785429 MS.gene96906:intron 35.0%
!! CATCAGGGAAACAGTTTTAT+TGG - chr1.4:31787499-31787518 MS.gene96906:CDS 35.0%
!! GAAGTATTGCAATGCAAAAG+GGG - chr1.4:31786597-31786616 MS.gene96906:intron 35.0%
!! GGAATATGAATTTTCAGGAG+AGG - chr1.4:31784774-31784793 MS.gene96906:intron 35.0%
!! GGTGGATTTTACAGATTGTT+TGG + chr1.4:31788003-31788022 None:intergenic 35.0%
!! GTGATATTTGATGACCCTTT+TGG - chr1.4:31784307-31784326 MS.gene96906:intron 35.0%
!! TATTGTTGTCGGTTCTGTAT+TGG - chr1.4:31785409-31785428 MS.gene96906:intron 35.0%
!! TGTTTTAGGTAATTCTAGCC+AGG - chr1.4:31786538-31786557 MS.gene96906:intron 35.0%
!! TTGGAACTTTAGAGTTTAGG+TGG + chr1.4:31787984-31788003 None:intergenic 35.0%
!!! AGGGAAACAGTTTTATTGGT+GGG - chr1.4:31787503-31787522 MS.gene96906:CDS 35.0%
!!! CCTCAGGAGGAAATTTTTTT+TGG + chr1.4:31787817-31787836 None:intergenic 35.0%
!!! GGAGGAAATTTTTTTTGGTG+TGG + chr1.4:31787812-31787831 None:intergenic 35.0%
!!! TTTTGTTTAGGTATTGGTGC+TGG - chr1.4:31785745-31785764 MS.gene96906:intron 35.0%
AAACCTTCAAAACAGGAGCT+AGG + chr1.4:31785249-31785268 None:intergenic 40.0%
AAAGGAGAAAGGAAAACGGT+TGG - chr1.4:31787776-31787795 MS.gene96906:intron 40.0%
AACGCATCATTATCTGACCT+AGG - chr1.4:31786391-31786410 MS.gene96906:intron 40.0%
AACTTCACTTGGGTTCAAGT+TGG + chr1.4:31785384-31785403 None:intergenic 40.0%
AACTTGAACCCAAGTGAAGT+TGG - chr1.4:31785383-31785402 MS.gene96906:intron 40.0%
AAGAGCTAGTGAATGTCGTA+TGG - chr1.4:31785445-31785464 MS.gene96906:intron 40.0%
AAGGAGAAAGGAAAACGGTT+GGG - chr1.4:31787777-31787796 MS.gene96906:intron 40.0%
AAGTATGTGGAGCAGAAAAG+TGG + chr1.4:31787537-31787556 None:intergenic 40.0%
AATAGGGCTATTGATGGAGA+TGG - chr1.4:31787456-31787475 MS.gene96906:intron 40.0%
AATCATTCCAGTTTCCACCA+AGG - chr1.4:31786222-31786241 MS.gene96906:intron 40.0%
ACCACAATCGATAGAATGCA+AGG + chr1.4:31787139-31787158 None:intergenic 40.0%
ACTTATTGAGCAAACTCGTC+AGG - chr1.4:31787693-31787712 MS.gene96906:CDS 40.0%
AGGTCAGATAATGATGCGTT+GGG + chr1.4:31786391-31786410 None:intergenic 40.0%
AGTATGTGGAGCAGAAAAGT+GGG + chr1.4:31787536-31787555 None:intergenic 40.0%
ATCACGAGCTTCTACTTTCA+AGG - chr1.4:31784673-31784692 MS.gene96906:intron 40.0%
ATCAGAACCTAATACCGGAA+AGG + chr1.4:31786286-31786305 None:intergenic 40.0%
CAACATGACATTGAGACATG+TGG + chr1.4:31788626-31788645 None:intergenic 40.0%
CACATGTCTCAATGTCATGT+TGG - chr1.4:31788624-31788643 MS.gene96906:intron 40.0%
CCACAATCGATAGAATGCAA+GGG + chr1.4:31787138-31787157 None:intergenic 40.0%
CTGAATCTGATCGATGATTC+TGG - chr1.4:31785515-31785534 MS.gene96906:intron 40.0%
GAAAATGTTGCCAATCGCTT+TGG - chr1.4:31786010-31786029 MS.gene96906:intron 40.0%
GACAACTAATCCAATGGCAT+GGG - chr1.4:31785780-31785799 MS.gene96906:intron 40.0%
GACTTCTCGTCAATAGATTG+TGG - chr1.4:31786309-31786328 MS.gene96906:intron 40.0%
GAGCATCCTTGGATAAGAAA+AGG + chr1.4:31789143-31789162 None:intergenic 40.0%
GATCTATCTCGCAAACACAT+TGG + chr1.4:31788568-31788587 None:intergenic 40.0%
GGAGTAATATCCATGTGCAT+TGG - chr1.4:31788943-31788962 MS.gene96906:intron 40.0%
GTAAATACCTTGGTGGAAAC+TGG + chr1.4:31786232-31786251 None:intergenic 40.0%
GTACCTGAATACACCAAGAA+TGG + chr1.4:31786627-31786646 None:intergenic 40.0%
GTATATTGCCGTAACAAGCT+AGG - chr1.4:31788357-31788376 MS.gene96906:intron 40.0%
TAGATTGTGGACCCAAAAAC+TGG - chr1.4:31786322-31786341 MS.gene96906:intron 40.0%
TAGGTCAGATAATGATGCGT+TGG + chr1.4:31786392-31786411 None:intergenic 40.0%
TATATACCTGTTGCTCCCAA+AGG + chr1.4:31788435-31788454 None:intergenic 40.0%
TCGAATGCTGAAACCATGTT+TGG - chr1.4:31787216-31787235 MS.gene96906:intron 40.0%
TCTATTGGGTAGAAAGTGAG+AGG - chr1.4:31787357-31787376 MS.gene96906:intron 40.0%
TGACAACTAATCCAATGGCA+TGG - chr1.4:31785779-31785798 MS.gene96906:intron 40.0%
TGATGTAGCTGCTGCTATAA+GGG - chr1.4:31785631-31785650 MS.gene96906:intron 40.0%
TGTAAATTGTGAGCAGGTAC+TGG - chr1.4:31789045-31789064 MS.gene96906:intron 40.0%
TGTCTGTTAACTGTCCTAAC+CGG + chr1.4:31785584-31785603 None:intergenic 40.0%
! AAAGAGCAGGGCATTCTAAT+GGG + chr1.4:31786721-31786740 None:intergenic 40.0%
! ACACCTTCAAACAGAAGTGT+TGG - chr1.4:31788656-31788675 MS.gene96906:intron 40.0%
! AGGGCTGGATTTTATGACAT+TGG - chr1.4:31785650-31785669 MS.gene96906:intron 40.0%
! ATTTCTCCTCGCCAGTTTTT+GGG + chr1.4:31786336-31786355 None:intergenic 40.0%
! GCTGAAACCATGTTTGGTTT+AGG - chr1.4:31787222-31787241 MS.gene96906:intron 40.0%
! GGACAACCTTTTCTTATCCA+AGG - chr1.4:31789134-31789153 MS.gene96906:CDS 40.0%
! GTCTTTTTGAATTGGTACCG+AGG - chr1.4:31784647-31784666 MS.gene96906:intron 40.0%
! TAAAGAGCAGGGCATTCTAA+TGG + chr1.4:31786722-31786741 None:intergenic 40.0%
! TACCCATTCTTGGTGTATTC+AGG - chr1.4:31786621-31786640 MS.gene96906:intron 40.0%
! TCATTTTATCTCTCCACCTC+AGG + chr1.4:31787833-31787852 None:intergenic 40.0%
! TCCCTTGTTTAGTTGTGAAG+AGG - chr1.4:31787750-31787769 MS.gene96906:intron 40.0%
! TTGCATTCTATCGATTGTGG+TGG - chr1.4:31787138-31787157 MS.gene96906:intron 40.0%
! TTTCATAGCTCTACGTACCA+AGG + chr1.4:31788756-31788775 None:intergenic 40.0%
! TTTTCAGAGGTAATCCCCAT+TGG + chr1.4:31785995-31786014 None:intergenic 40.0%
!! ACACAGCTTTAAGCTTTCCT+AGG + chr1.4:31786411-31786430 None:intergenic 40.0%
!! CAGGCTTGTCTTTTAGGAAA+TGG - chr1.4:31787712-31787731 MS.gene96906:CDS 40.0%
!! CATCTTCTGTTGGTTTCACT+TGG - chr1.4:31787908-31787927 MS.gene96906:CDS 40.0%
!! CTTAGTGCTCTGAAAACTTC+TGG - chr1.4:31786968-31786987 MS.gene96906:CDS 40.0%
!! TATCCTAGCTCCTGTTTTGA+AGG - chr1.4:31785243-31785262 MS.gene96906:intron 40.0%
!! TGCCATTGGATTAGTTGTCA+TGG + chr1.4:31785779-31785798 None:intergenic 40.0%
!! TTTAGGTATTGGTGCTGGTT+TGG - chr1.4:31785750-31785769 MS.gene96906:intron 40.0%
!!! CAGGGAAACAGTTTTATTGG+TGG - chr1.4:31787502-31787521 MS.gene96906:CDS 40.0%
!!! GCATTTTATGCTGGTTTTCC+TGG - chr1.4:31785470-31785489 MS.gene96906:intron 40.0%
AAAACTGCCTCCTTCCAATG+GGG - chr1.4:31785978-31785997 MS.gene96906:intron 45.0%
AATGGCAATTGGGCATCCTT+TGG - chr1.4:31788416-31788435 MS.gene96906:intron 45.0%
AATTCTAGCCAGGTGAGTGA+TGG - chr1.4:31786548-31786567 MS.gene96906:intron 45.0%
ACAGGAGCTAGGATATCATC+AGG + chr1.4:31785238-31785257 None:intergenic 45.0%
ACTAATCCAATGGCATGGGA+TGG - chr1.4:31785784-31785803 MS.gene96906:intron 45.0%
AGAAAAGGTTGTCCCCTTTG+CGG + chr1.4:31789128-31789147 None:intergenic 45.0%
AGTGAGTGTACCAATGCACA+TGG + chr1.4:31788956-31788975 None:intergenic 45.0%
ATCACAGGACAGCTGCATTT+GGG - chr1.4:31784997-31785016 MS.gene96906:intron 45.0%
ATGGCAATTGGGCATCCTTT+GGG - chr1.4:31788417-31788436 MS.gene96906:intron 45.0%
CAAAACTGCCTCCTTCCAAT+GGG - chr1.4:31785977-31785996 MS.gene96906:intron 45.0%
CAGGAGCTAGGATATCATCA+GGG + chr1.4:31785237-31785256 None:intergenic 45.0%
CCTTGAAACTCCAAAGCGAT+TGG + chr1.4:31786023-31786042 None:intergenic 45.0%
CTGATGTAGCTGCTGCTATA+AGG - chr1.4:31785630-31785649 MS.gene96906:intron 45.0%
CTTTGCAAAGCTAAACGTGG+TGG - chr1.4:31785196-31785215 MS.gene96906:intron 45.0%
GAATTCGATGGGGACTTGAT+TGG - chr1.4:31784554-31784573 MS.gene96906:intron 45.0%
GCACCAACACTTCTGTTTGA+AGG + chr1.4:31788662-31788681 None:intergenic 45.0%
GCTCTTTGCAAAGCTAAACG+TGG - chr1.4:31785193-31785212 MS.gene96906:intron 45.0%
GGGTCGAATTCCATCATCAA+CGG + chr1.4:31786371-31786390 None:intergenic 45.0%
GTTGTAGTACCCCTTTATCG+TGG - chr1.4:31787097-31787116 MS.gene96906:CDS 45.0%
TAGAAGCTCGTGATTCTCCT+CGG + chr1.4:31784667-31784686 None:intergenic 45.0%
TATCACAGGACAGCTGCATT+TGG - chr1.4:31784996-31785015 MS.gene96906:intron 45.0%
TCACGATTGTAGCCCTTTAG+AGG + chr1.4:31785914-31785933 None:intergenic 45.0%
TGATCTTATACCAGCAGTGG+TGG + chr1.4:31786449-31786468 None:intergenic 45.0%
TTCACAGGCTTCAGCATGTT+TGG - chr1.4:31784956-31784975 MS.gene96906:intron 45.0%
TTCTGTCTGACCCTTTGCTT+TGG - chr1.4:31784802-31784821 MS.gene96906:intron 45.0%
TTGCATGAAATGAAGCGACG+TGG - chr1.4:31788904-31788923 MS.gene96906:intron 45.0%
! ACTCGTCAGGCTTGTCTTTT+AGG - chr1.4:31787706-31787725 MS.gene96906:CDS 45.0%
! CAATGTTAACGGAGGTGCAA+TGG - chr1.4:31788398-31788417 MS.gene96906:intron 45.0%
! CATTGGAAGGAGGCAGTTTT+GGG + chr1.4:31785978-31785997 None:intergenic 45.0%
! CCCTTGCATTCTATCGATTG+TGG - chr1.4:31787135-31787154 MS.gene96906:intron 45.0%
! CGTATGGCTGCATTTTATGC+TGG - chr1.4:31785461-31785480 MS.gene96906:intron 45.0%
! CTTCTGTTTGAAGGTGTGTC+TGG + chr1.4:31788653-31788672 None:intergenic 45.0%
! GATTTCTCCTCGCCAGTTTT+TGG + chr1.4:31786337-31786356 None:intergenic 45.0%
! GCGATTGGCAACATTTTCAG+AGG + chr1.4:31786008-31786027 None:intergenic 45.0%
! GTCACCATTTCCGTTGATGA+TGG - chr1.4:31786358-31786377 MS.gene96906:intron 45.0%
! GTTGATAGGTTGAGTCTCAC+AGG - chr1.4:31786158-31786177 MS.gene96906:intron 45.0%
! TTTTATCTCTCCACCTCAGG+AGG + chr1.4:31787830-31787849 None:intergenic 45.0%
!! ATTGTGAGCAGGTACTGGAA+TGG - chr1.4:31789050-31789069 MS.gene96906:intron 45.0%
!! CCAATCGCTTTGGAGTTTCA+AGG - chr1.4:31786020-31786039 MS.gene96906:intron 45.0%
!! TTGTGAGCAGGTACTGGAAT+GGG - chr1.4:31789051-31789070 MS.gene96906:intron 45.0%
!! ATTAAATGAAAAAATTAATT+TGG + chr1.4:31785862-31785881 None:intergenic 5.0%
!!! ATCATTTTAAATAATTATAT+AGG + chr1.4:31787419-31787438 None:intergenic 5.0%
!!! ATTTCAATTTATTTTATTTT+TGG - chr1.4:31788851-31788870 MS.gene96906:intron 5.0%
!!! TCATTTTAAATAATTATATA+GGG + chr1.4:31787418-31787437 None:intergenic 5.0%
!!! TTTAAAATGATTATTAATTA+CGG - chr1.4:31787428-31787447 MS.gene96906:intron 5.0%
!!! TTTCAATTTATTTTATTTTT+GGG - chr1.4:31788852-31788871 MS.gene96906:intron 5.0%
ACAGGCTTCAGCATGTTTGG+CGG - chr1.4:31784959-31784978 MS.gene96906:intron 50.0%
ACTGATCCATCCCATGCCAT+TGG + chr1.4:31785793-31785812 None:intergenic 50.0%
AGCTTTGCAATGCCCGCAAA+GGG - chr1.4:31789112-31789131 MS.gene96906:CDS 50.0%
AGGAAAACGGTTGGGATGTG+TGG - chr1.4:31787785-31787804 MS.gene96906:intron 50.0%
AGGTAATCCCCATTGGAAGG+AGG + chr1.4:31785988-31786007 None:intergenic 50.0%
CAAAAGGGGCTACCCATTCT+TGG - chr1.4:31786611-31786630 MS.gene96906:intron 50.0%
CAACTGGAATTGCAGCAGCT+GGG + chr1.4:31788179-31788198 None:intergenic 50.0%
CAGAGGTAATCCCCATTGGA+AGG + chr1.4:31785991-31786010 None:intergenic 50.0%
CCAAAACTGCCTCCTTCCAA+TGG - chr1.4:31785976-31785995 MS.gene96906:intron 50.0%
CTCTAGACCTGCAGCTTTCA+CGG + chr1.4:31788202-31788221 None:intergenic 50.0%
GAAAAGGTTGTCCCCTTTGC+GGG + chr1.4:31789127-31789146 None:intergenic 50.0%
GATGGGGACTTGATTGGTGT+TGG - chr1.4:31784560-31784579 MS.gene96906:intron 50.0%
GGCGCAAGTATTCATCTTCG+AGG - chr1.4:31786989-31787008 MS.gene96906:intron 50.0%
TATCCAAGGATGCTCGCTAG+TGG - chr1.4:31789148-31789167 MS.gene96906:CDS 50.0%
TCACAGGACAGCTGCATTTG+GGG - chr1.4:31784998-31785017 MS.gene96906:intron 50.0%
TGAAATGAAGCGACGTGGCA+AGG - chr1.4:31788909-31788928 MS.gene96906:intron 50.0%
TTCCTGCCTTTCGTCCATCA+GGG - chr1.4:31787484-31787503 MS.gene96906:intron 50.0%
! AACGGAGGTGCAATGGCAAT+TGG - chr1.4:31788405-31788424 MS.gene96906:intron 50.0%
! ACGGAGGTGCAATGGCAATT+GGG - chr1.4:31788406-31788425 MS.gene96906:intron 50.0%
! CATACGTGTACTGGTGTGTG+TGG - chr1.4:31788991-31789010 MS.gene96906:intron 50.0%
! CCATTGGAAGGAGGCAGTTT+TGG + chr1.4:31785979-31785998 None:intergenic 50.0%
! CTGTTTCCCTGATGGACGAA+AGG + chr1.4:31787493-31787512 None:intergenic 50.0%
! TGATGGACGAAAGGCAGGAA+GGG + chr1.4:31787484-31787503 None:intergenic 50.0%
! TGTTCGGTTGCAGGGAGTAT+CGG + chr1.4:31788056-31788075 None:intergenic 50.0%
!! GAGACAGTGCTGCTTATCAC+AGG - chr1.4:31784982-31785001 MS.gene96906:intron 50.0%
!! GGTGTTGATCCTGCCATCAT+GGG - chr1.4:31788147-31788166 MS.gene96906:intron 50.0%
!! TGGTGTTGATCCTGCCATCA+TGG - chr1.4:31788146-31788165 MS.gene96906:intron 50.0%
!! TGTGAGCAGGTACTGGAATG+GGG - chr1.4:31789052-31789071 MS.gene96906:intron 50.0%
!!! GCAGCTGCTGTTTTTGAGAG+AGG - chr1.4:31789075-31789094 MS.gene96906:CDS 50.0%
AAAGACGGAACCACCACTGC+TGG - chr1.4:31786436-31786455 MS.gene96906:intron 55.0%
AACCGGCACAGTCTCTGGAT+GGG + chr1.4:31785567-31785586 None:intergenic 55.0%
CAGGCTTCAGCATGTTTGGC+GGG - chr1.4:31784960-31784979 MS.gene96906:intron 55.0%
CTCTCTGCGCATACGTGTAC+TGG - chr1.4:31788982-31789001 MS.gene96906:intron 55.0%
CTTCCTGCCTTTCGTCCATC+AGG - chr1.4:31787483-31787502 MS.gene96906:intron 55.0%
GAGCTTTGCAATGCCCGCAA+AGG - chr1.4:31789111-31789130 MS.gene96906:CDS 55.0%
GATCCTGCCATCATGGGTGT+TGG - chr1.4:31788153-31788172 MS.gene96906:intron 55.0%
GCAACTGGAATTGCAGCAGC+TGG + chr1.4:31788180-31788199 None:intergenic 55.0%
GCTTTGCAATGCCCGCAAAG+GGG - chr1.4:31789113-31789132 MS.gene96906:CDS 55.0%
GTAGCTGCTGCTATAAGGGC+TGG - chr1.4:31785635-31785654 MS.gene96906:intron 55.0%
TAACCGGCACAGTCTCTGGA+TGG + chr1.4:31785568-31785587 None:intergenic 55.0%
TGTGGACCCAAAAACTGGCG+AGG - chr1.4:31786327-31786346 MS.gene96906:intron 55.0%
! CTGATGGACGAAAGGCAGGA+AGG + chr1.4:31787485-31787504 None:intergenic 55.0%
! GTCGGTTCTGTATTGGGAGC+TGG - chr1.4:31785416-31785435 MS.gene96906:intron 55.0%
! TTCCCTGATGGACGAAAGGC+AGG + chr1.4:31787489-31787508 None:intergenic 55.0%
!! ATCCAGAGACTGTGCCGGTT+AGG - chr1.4:31785567-31785586 MS.gene96906:intron 55.0%
!! GTGAGCAGGTACTGGAATGG+GGG - chr1.4:31789053-31789072 MS.gene96906:intron 55.0%
ACCGGCACAGTCTCTGGATG+GGG + chr1.4:31785566-31785585 None:intergenic 60.0%
AGCTGGGCCAACACCCATGA+TGG + chr1.4:31788163-31788182 None:intergenic 60.0%
CCAGTTGCCGTGAAAGCTGC+AGG - chr1.4:31788192-31788211 MS.gene96906:intron 60.0%
CCTGCAGCTTTCACGGCAAC+TGG + chr1.4:31788195-31788214 None:intergenic 60.0%
CGTGGCAAGGACTGCCGATA+TGG - chr1.4:31788922-31788941 MS.gene96906:intron 60.0%
CTCCAGCACCATCACTCACC+TGG + chr1.4:31786559-31786578 None:intergenic 60.0%
GGTTGAGTCTCACAGGCGAG+CGG - chr1.4:31786165-31786184 MS.gene96906:intron 60.0%
GTCCTAACCGGCACAGTCTC+TGG + chr1.4:31785572-31785591 None:intergenic 60.0%
TCCCCATCCAGAGACTGTGC+CGG - chr1.4:31785562-31785581 MS.gene96906:intron 60.0%
! AGCCAGGTGAGTGATGGTGC+TGG - chr1.4:31786554-31786573 MS.gene96906:intron 60.0%
! GGGCATCCTTTGGGAGCAAC+AGG - chr1.4:31788426-31788445 MS.gene96906:intron 60.0%
!! CGGTTGCAGGGAGTATCGGT+AGG + chr1.4:31788052-31788071 None:intergenic 60.0%
GGGCCAACACCCATGATGGC+AGG + chr1.4:31788159-31788178 None:intergenic 65.0%
GCGGCTGCTGCTACTGCTGC+TGG - chr1.4:31786184-31786203 MS.gene96906:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 31784146 31789167 31784146 ID=MS.gene96906
chr1.4 mRNA 31784146 31789167 31784146 ID=MS.gene96906.t1;Parent=MS.gene96906
chr1.4 exon 31789075 31789167 31789075 ID=MS.gene96906.t1.exon1;Parent=MS.gene96906.t1
chr1.4 CDS 31789075 31789167 31789075 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31788274 31788350 31788274 ID=MS.gene96906.t1.exon2;Parent=MS.gene96906.t1
chr1.4 CDS 31788274 31788350 31788274 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31788049 31788133 31788049 ID=MS.gene96906.t1.exon3;Parent=MS.gene96906.t1
chr1.4 CDS 31788049 31788133 31788049 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31787822 31787948 31787822 ID=MS.gene96906.t1.exon4;Parent=MS.gene96906.t1
chr1.4 CDS 31787822 31787948 31787822 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31787642 31787740 31787642 ID=MS.gene96906.t1.exon5;Parent=MS.gene96906.t1
chr1.4 CDS 31787642 31787740 31787642 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31787491 31787558 31787491 ID=MS.gene96906.t1.exon6;Parent=MS.gene96906.t1
chr1.4 CDS 31787491 31787558 31787491 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31787250 31787357 31787250 ID=MS.gene96906.t1.exon7;Parent=MS.gene96906.t1
chr1.4 CDS 31787250 31787357 31787250 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31787070 31787147 31787070 ID=MS.gene96906.t1.exon8;Parent=MS.gene96906.t1
chr1.4 CDS 31787070 31787147 31787070 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31786856 31786988 31786856 ID=MS.gene96906.t1.exon9;Parent=MS.gene96906.t1
chr1.4 CDS 31786856 31786988 31786856 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31786671 31786767 31786671 ID=MS.gene96906.t1.exon10;Parent=MS.gene96906.t1
chr1.4 CDS 31786671 31786767 31786671 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31785059 31785182 31785059 ID=MS.gene96906.t1.exon11;Parent=MS.gene96906.t1
chr1.4 CDS 31785059 31785182 31785059 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31784866 31784974 31784866 ID=MS.gene96906.t1.exon12;Parent=MS.gene96906.t1
chr1.4 CDS 31784866 31784974 31784866 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31784349 31784432 31784349 ID=MS.gene96906.t1.exon13;Parent=MS.gene96906.t1
chr1.4 CDS 31784349 31784432 31784349 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
chr1.4 exon 31784146 31784252 31784146 ID=MS.gene96906.t1.exon14;Parent=MS.gene96906.t1
chr1.4 CDS 31784146 31784252 31784146 ID=cds.MS.gene96906.t1;Parent=MS.gene96906.t1
Gene Sequence

>MS.gene96906

ATGGACAAAGCGATTAACAGACAAAAAGTTTTACTTCAACATCTCAATCCTTCTTCTTTTTCATCCAATGATTCATCTTCCACATCTCTCAATGTTTGTTTCTTTCTCTTTGAAATTCTCAAATTTTGCTTTGATTTTATCGCCTTTTAATTGGTTCTTTTGTGATATTTGATGACCCTTTTGGATTTTATGTGTGTTTTTGTTTTCTTGATTGGTTTTTAGCTTGGAATTTTGTTAAAGTTTTGATCTTGAATCTGTTTGGATATTCATATTGATGGAATCACCAAAAAGTATATGTTCATATTCATGTGGATTCTATTGTGGATAATCACTTTATGAGTTAAAATCACTTAATATATATCGTCTCGATCATTGGAAATAGAAGCTCATGTTTATTCTTTGTCTGATGAATTCGATGGGGACTTGATTGGTGTTGGTTTGATAAAAATAAGGAAAATATATATGATTTGAGTTTTGAGGCATTCATATTTGTTTATCCTTGTCTTTTTGAATTGGTACCGAGGAGAATCACGAGCTTCTACTTTCAAGGAGAATCATGACCTGATTTGTGTTGGTTCTATAAAAGTATATGAATTGGTACAAAGTAGAATATAGTTTAATGTTTGTTGGAATATGAATTTTCAGGAGAGGGAATATTCTGTCTGACCCTTTGCTTTGGTTTGAATATGTGTTTATGTATGTATATATGGAGATGTATGTATGTACATAAATATTTGTATGTGTGTGTATCTTAATGCTTTGAATTAAACTTGTTCTGGTGGACTTACATTTGTATGTTGAACATTTGATTTCACAGGCTTCAGCATGTTTGGCGGGAGACAGTGCTGCTTATCACAGGACAGCTGCATTTGGGGACGATGTAGTGATTGTAGCGTGAGTTCAGCTATTACTCGAATTTTTCATATCAAACATGTGTTTTGTTTGATAATTGATATAGAAGATTTGTAGACAAGCTTATGTGAGCATATATTATGATATAAGTAGTTATTGAATTACTTGTTATGTGTTTGCAGTGCATATCGGACTGCTCTTTGCAAAGCTAAACGTGGTGGTTTCAAAGACACTCACCCTGATGATATCCTAGCTCCTGTTTTGAAGGTTTTATTTATAATTTCTGATTCCTTTACTACTTTAGTTCACGTTCTGTTCTATCAATGTGCATCATTTACATGAACGTGATGTTGAGGTTTCATTGTAGGCTGTAATAGAGAAAACCAACTTGAACCCAAGTGAAGTTGGAGATATTGTTGTCGGTTCTGTATTGGGAGCTGGATCTCAAAGAGCTAGTGAATGTCGTATGGCTGCATTTTATGCTGGTTTTCCTGGTATGTCTAGATAATTTGTGTAACTGAATCTGATCGATGATTCTGGTTAGTTGTTCACACGTTTTTTTTTTCCCCATCCAGAGACTGTGCCGGTTAGGACAGTTAACAGACAATGTTCATCTGGGCTACAAGCTGTTGCTGATGTAGCTGCTGCTATAAGGGCTGGATTTTATGACATTGGTAAGGGATGCATCAAATTGTTTTGTACTTGTGATTGCAAGAACTTTTCATAATTGTTTTACCTTTAACTATTTTTTGTTTAGGTATTGGTGCTGGTTTGGAATCCATGACAACTAATCCAATGGCATGGGATGGATCAGTGAATCCTAGAGTAATTTTCCTGTTTTTCCTAACTTTATCTCCTTTGCCAAATTAATTTTTTCATTTAATTTTTTCAATTTTTGTTTCTTAAAATAATACCTCTAAAGGGCTACAATCGTGATATTTCTTACTTTGTCGTGCAGGTGAAAATGTTTGAACAAGCCCAAAACTGCCTCCTTCCAATGGGGATTACCTCTGAAAATGTTGCCAATCGCTTTGGAGTTTCAAGGAAAGAACAAGATGAAGCTGCAGTAAGTTGAATATTTTTTTAATGCAACATTATCTTTTCTCTTTTATTTATATTTTAACTTGAACAAACCATAACTAAATCTTGCTGATAATATTGTTGATAGGTTGAGTCTCACAGGCGAGCGGCTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATCATTCCAGTTTCCACCAAGGTATTTACCAATTTCCACTATAAAGGTATATTGTATTTTCCTTTCCGGTATTAGGTTCTGATTTAGACTTCTCGTCAATAGATTGTGGACCCAAAAACTGGCGAGGAGAAATCTGTCACCATTTCCGTTGATGATGGAATTCGACCCAACGCATCATTATCTGACCTAGGAAAGCTTAAAGCTGTGTTCAAAAAAGACGGAACCACCACTGCTGGTATAAGATCATAAAAATGTGATTCATTTCCTCAAATTCTTTCTAATATAACATTATTTAATCATTTGATTTGATGTCTGTGTTTTAGGTAATTCTAGCCAGGTGAGTGATGGTGCTGGAGCTGTTCTGCTGATGAAAAGAAGTATTGCAATGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGGTACTTAATTGGTAACATAAAAGTTATAATCCGTGACGATATTTATAAACCGATTTCAAATTGGCACATTGTATGCCCATTAGAATGCCCTGCTCTTTAACATGATATAAATTAGAATGTGTATTTAACATGAAATGAAATGTGTGATAATTTTTGGAAAAATATCAAATCAGTGGTAATTTGTCAGAATATTGTACTTTCTCTTGTTTCTGCCAAAAAAACATGAATATATACTTCACCAGATTAACTTTCATGTATCTATTTCCTTATGTTGAATCAATTCAAGTGATTGTTAAGTTTAACCATATAAGTACTGGTTTTATTTCTTAGTGCTCTGAAAACTTCTGGCGCAAGTATTCATCTTCGAGGACATGATCAATTAAGCGCAATAGCACATAACCAACCCAAAATGCATTATATAATTGTGTGGACAAGCTCCTGTTTTATGCACTGTGTTGTAGTACCCCTTTATCGTGGCATTTGATATTGTTTCCCTTGCATTCTATCGATTGTGGTGGTGCGCAAAATATATCATATTTGTGGATAATTAAGAAAGTTGAAAAAGAAAAAGACTCGAATGCTGAAACCATGTTTGGTTTAGGAAAGAAAATATGAAGAAAGAAAAAAATACATATAGAAAATTAGATGATTTTTTATTTGTTTAGTACAACAGAAAATGAAATAAAAGAAAGCAAAAACTTTTACCTTATCTTTTCTATTGGGTAGAAAGTGAGAGGAAAGAAATAAACTTATTTAAAAACTACATAACTACCCCTATATAATTATTTAAAATGATTATTAATTACGGAATATAATAGGGCTATTGATGGAGATGGATCCCTTCCTGCCTTTCGTCCATCAGGGAAACAGTTTTATTGGTGGGTTTCACACCCACTTTTCTGCTCCACATACTTTTCGGTTGTTACAAATGGTGGATGAAAAACATCAAGTGTTATTTCCTTGATATTCTTTTTTTCCATACCTTTTCAAGTATACCAAATAAAGTATGTGAGATTGACTAGTGTCTAATTATCAAAAAGACTCGTAACAACTTATTGAGCAAACTCGTCAGGCTTGTCTTTTAGGAAATGGAACTTCATACCATTTTCCCTTGTTTAGTTGTGAAGAGGTAAAAAGGAGAAAGGAAAACGGTTGGGATGTGTGGCCCACACCAAAAAAAATTTCCTCCTGAGGTGGAGAGATAAAATGAGTTTTGAGAAGATAGATAATTCCACTCTTTCACTTTTACTCATCTATTGATATTTCATCTTCTGTTGGTTTCACTTGGTTTTCTTATTTTACCAAAGTGAAAAAGACATCACATCAGTTTTTCATTTTCCACCTAAACTCTAAAGTTCCAAACAATCTGTAAAATCCACCTATTTTCTTTTCTCTCCATTTTATTTCCTACCGATACTCCCTGCAACCGAACAATTGTTATTGAATCTTATTCCAATCTAAAAATCATCTTTGTTGGTTGTAATGTAGGAGTTTCGTCGCAGTTGGTGTTGATCCTGCCATCATGGGTGTTGGCCCAGCTGCTGCAATTCCAGTTGCCGTGAAAGCTGCAGGTCTAGAGCTTGATGATATCGATCTTTTTGAAATTAATGAGGTAATTAACTAATGTCCTTGTCTTATTTTCCTTTTCTCTCACCATTTGTTAATGTACTAACTTCAATGATTTGCATATATTCAGGCTTTTGCTTCCCAATTTGTATATTGCCGTAACAAGCTAGGACTTGATTCACAAAAGATCAATGTTAACGGAGGTGCAATGGCAATTGGGCATCCTTTGGGAGCAACAGGTATATACCACAAGTCAACAACTTGTATTTTCACATTCCATGAGCTACAGCATCATTTTTGATTTTTTAAGCTTTAAACTTAATCATATACTTGTATCCTTTTTGTTTTGAAAGTTACCAATGTGTTTGCGAGATAGATCTCACATGTGCAACAGACACATGACACTGACACGCACCACATGTCTCAATGTCATGTTGGTGTCCAGACACACCTTCAAACAGAAGTGTTGGTGCTACGTTAGATCTCACCTATAGCTAAAATAACCTAATATATTCATGTCTTTTTCAAACAAAACTGTAATGTGCCTTGGTACGTAGAGCTATGAAATGTGAGAAATCAGAAATGAACTAAAATATCATAAACTAGGTAACAAATAATAACTGGTACCACATACATATATGCATTTCAATTTATTTTATTTTTGGGATGTAGGTGCTCGATGTGTAGCAACTCTATTGCATGAAATGAAGCGACGTGGCAAGGACTGCCGATATGGAGTAATATCCATGTGCATTGGTACACTCACTTTCTCACTCTCTGCGCATACGTGTACTGGTGTGTGTGGTCTTGAACACCATATAGTTAACATTGTTTATTGTAAATTGTGAGCAGGTACTGGAATGGGGGCAGCTGCTGTTTTTGAGAGAGGTGATTCTGTTGATGAGCTTTGCAATGCCCGCAAAGGGGACAACCTTTTCTTATCCAAGGATGCTCGCTAG

Protein sequence

>MS.gene96906.t1

MDKAINRQKVLLQHLNPSSFSSNDSSSTSLNASACLAGDSAAYHRTAAFGDDVVIVAAYRTALCKAKRGGFKDTHPDDILAPVLKAVIEKTNLNPSEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIRAGFYDIGIGAGLESMTTNPMAWDGSVNPRVKMFEQAQNCLLPMGITSENVANRFGVSRKEQDEAAVESHRRAAAATAAGRFKDEIIPVSTKIVDPKTGEEKSVTISVDDGIRPNASLSDLGKLKAVFKKDGTTTAGNSSQVSDGAGAVLLMKRSIAMQKGLPILGVFRSFVAVGVDPAIMGVGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDSQKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRYGVISMCIGTGMGAAAVFERGDSVDELCNARKGDNLFLSKDAR