Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97026.t1 | XP_013449858.1 | 97.8 | 317 | 7 | 0 | 1 | 317 | 1 | 317 | 1.50E-163 | 585.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97026.t1 | Q2QLW3 | 70.8 | 301 | 85 | 1 | 16 | 316 | 1 | 298 | 2.5e-111 | 403.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97026.t1 | A0A072U3H2 | 97.8 | 317 | 7 | 0 | 1 | 317 | 1 | 317 | 1.1e-163 | 585.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene97026 | 0.80396 | 2.72E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene97026 | 0.803957 | 2.72E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene97026 | 0.848762 | 4.99E-60 | -1.69E-46 |
| MS.gene052673 | MS.gene97026 | 0.846312 | 2.35E-59 | -1.69E-46 |
| MS.gene056830 | MS.gene97026 | 0.830993 | 2.15E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97026.t1 | MTR_7g096510 | 97.792 | 317 | 7 | 0 | 1 | 317 | 1 | 317 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97026.t1 | AT3G58180 | 75.884 | 311 | 75 | 0 | 7 | 317 | 4 | 314 | 2.76e-169 | 473 |
| MS.gene97026.t1 | AT3G62530 | 50.968 | 155 | 69 | 2 | 151 | 304 | 68 | 216 | 1.44e-41 | 144 |
| MS.gene97026.t1 | AT3G62530 | 36.923 | 130 | 78 | 3 | 22 | 150 | 92 | 218 | 2.79e-13 | 68.6 |
Find 70 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTTCTCGATGAGGAAAA+AGG | 0.236522 | 7.4:-12949742 | MS.gene97026:CDS |
| CCTCGCACCGCCCTTATTCT+AGG | 0.251159 | 7.4:-12950835 | MS.gene97026:intron |
| TGCTGCTATTGTTGATTCCT+TGG | 0.290741 | 7.4:-12949659 | MS.gene97026:CDS |
| ATTCACATCTCTAAGTATAT+TGG | 0.307934 | 7.4:+12949217 | None:intergenic |
| AAGCAGCTTTGTCTTGCAAT+TGG | 0.318055 | 7.4:+12949252 | None:intergenic |
| CACGAAGCTGCATTTGCATT+AGG | 0.319693 | 7.4:-12950281 | MS.gene97026:CDS |
| AAAGGGAGTAACCTAGAATA+AGG | 0.319941 | 7.4:+12950824 | None:intergenic |
| GAAGCCCTTGGTTCAATTGC+AGG | 0.331761 | 7.4:-12949164 | MS.gene97026:intron |
| TGAAGCGTTCGGAGATTGGC+TGG | 0.334155 | 7.4:+12950896 | None:intergenic |
| ATAAGGGCGGTGCGAGGGGC+GGG | 0.339458 | 7.4:+12950841 | None:intergenic |
| ACGAAGCTGCATTTGCATTA+GGG | 0.353033 | 7.4:-12950280 | MS.gene97026:CDS |
| ATGCTAGAATTTGAAAGATC+AGG | 0.354231 | 7.4:-12947959 | MS.gene97026:CDS |
| CAAGAGCTGGCCGGTGCTGC+AGG | 0.367951 | 7.4:+12949883 | None:intergenic |
| TGCGAGGGGCGGGGCCTTTG+AGG | 0.372831 | 7.4:+12950851 | None:intergenic |
| TAAGGGCGGTGCGAGGGGCG+GGG | 0.381669 | 7.4:+12950842 | None:intergenic |
| CTTTGTGCAACAAGAGGCTC+TGG | 0.382092 | 7.4:+12948001 | None:intergenic |
| GCTGAAGCACTAGGCGCTAT+TGG | 0.386313 | 7.4:-12950072 | MS.gene97026:CDS |
| GCTGCTATTGTTGATTCCTT+GGG | 0.393386 | 7.4:-12949658 | MS.gene97026:CDS |
| AATAAGGGCGGTGCGAGGGG+CGG | 0.393478 | 7.4:+12950840 | None:intergenic |
| AAGAGATTCATCGAATTTGT+TGG | 0.413615 | 7.4:-12950306 | MS.gene97026:CDS |
| GTTCTTCAGTTGGTCAACTA+AGG | 0.420278 | 7.4:-12949861 | MS.gene97026:intron |
| GAAAACGTTTAATGTACAAT+TGG | 0.420894 | 7.4:+12947822 | None:intergenic |
| CGCTAAACGACGTCGCTTCG+TGG | 0.442287 | 7.4:-12950966 | MS.gene97026:CDS |
| ATGTTTCAATAAAGCACTCT+TGG | 0.443976 | 7.4:+12949633 | None:intergenic |
| GCTCTGAAGCGTTCGGAGAT+TGG | 0.445480 | 7.4:+12950892 | None:intergenic |
| CAATTGGAGGACGCATGAAC+AGG | 0.447305 | 7.4:+12947838 | None:intergenic |
| CTTCAAGAAGGTATACACTT+TGG | 0.450900 | 7.4:+12948038 | None:intergenic |
| GCCAGCTCTTGTTCTTCAGT+TGG | 0.457141 | 7.4:-12949871 | MS.gene97026:CDS |
| GTCTGTTGATCCTGCAGCAC+CGG | 0.466493 | 7.4:-12949893 | MS.gene97026:CDS |
| GAAGAGTGCTCTGAAGCGTT+CGG | 0.477233 | 7.4:+12950885 | None:intergenic |
| ACTACCTCATGGCGAACAAT+GGG | 0.478742 | 7.4:+12950194 | None:intergenic |
| GTTTCTCGAACCTCTTGAGC+TGG | 0.484293 | 7.4:+12950003 | None:intergenic |
| GCAGGATCAACAGACTTAAA+CGG | 0.491292 | 7.4:+12949901 | None:intergenic |
| AACTGAGGTTAATGCAGGTA+TGG | 0.493370 | 7.4:+12950238 | None:intergenic |
| GCTTAGGCAGCTGAAGCACT+AGG | 0.495965 | 7.4:-12950081 | MS.gene97026:intron |
| GAAGCGTTCGGAGATTGGCT+GGG | 0.496757 | 7.4:+12950897 | None:intergenic |
| AACGTTTAATGTACAATTGG+AGG | 0.500470 | 7.4:+12947825 | None:intergenic |
| TAGAATAAGGGCGGTGCGAG+GGG | 0.501591 | 7.4:+12950837 | None:intergenic |
| TGCTAGAATTTGAAAGATCA+GGG | 0.509212 | 7.4:-12947958 | MS.gene97026:CDS |
| GTTCCTGTGCGAGTTGCTGT+TGG | 0.510297 | 7.4:-12950926 | MS.gene97026:CDS |
| TACTACCTCATGGCGAACAA+TGG | 0.510393 | 7.4:+12950193 | None:intergenic |
| AAGATCAGGGAAATCGTTTG+AGG | 0.512480 | 7.4:-12947945 | MS.gene97026:intron |
| CATGAGGCTGCTGAAGCCCT+TGG | 0.515557 | 7.4:-12949176 | MS.gene97026:CDS |
| GCAGCCTCATGTCTAACCAT+TGG | 0.519278 | 7.4:+12949188 | None:intergenic |
| CTAGAATAAGGGCGGTGCGA+GGG | 0.531517 | 7.4:+12950836 | None:intergenic |
| TTCTCTCTTCGCAACCTCAA+AGG | 0.536423 | 7.4:-12950865 | MS.gene97026:CDS |
| CGCTTCGTGGTCATCAGAGA+TGG | 0.537081 | 7.4:-12950953 | MS.gene97026:CDS |
| GGATTCTGATCCAGCTCAAG+AGG | 0.544300 | 7.4:-12950013 | MS.gene97026:CDS |
| AAGGGAGTAACCTAGAATAA+GGG | 0.546220 | 7.4:+12950825 | None:intergenic |
| ACCAACTGAAGAACAAGAGC+TGG | 0.552840 | 7.4:+12949870 | None:intergenic |
| TGACAACTTTGTGCAACAAG+AGG | 0.553059 | 7.4:+12947995 | None:intergenic |
| GACTTAAACGGAGAAATAGC+AGG | 0.567631 | 7.4:+12949913 | None:intergenic |
| TTAAGAACTGAGGTTAATGC+AGG | 0.570810 | 7.4:+12950233 | None:intergenic |
| AGTCCAACAGCAACTCGCAC+AGG | 0.572500 | 7.4:+12950923 | None:intergenic |
| TAAAGCACTCTTGGAACCCA+AGG | 0.578502 | 7.4:+12949642 | None:intergenic |
| GAGTGCTTTATTGAAACATG+AGG | 0.578510 | 7.4:-12949629 | MS.gene97026:intron |
| ATGGCGAACAATGGGATGCA+AGG | 0.582507 | 7.4:+12950202 | None:intergenic |
| TTTGCACTTCGAAATGATGG+TGG | 0.586504 | 7.4:-12949694 | MS.gene97026:CDS |
| TAGGGATTTACTTCTCGATG+AGG | 0.598291 | 7.4:-12949749 | MS.gene97026:CDS |
| CTGCCGAAAATTCTTCAAGA+AGG | 0.610074 | 7.4:+12948026 | None:intergenic |
| GCATCCCATTGTTCGCCATG+AGG | 0.616911 | 7.4:-12950198 | MS.gene97026:intron |
| ACTGAAGAACAAGAGCTGGC+CGG | 0.622351 | 7.4:+12949874 | None:intergenic |
| CCTAGAATAAGGGCGGTGCG+AGG | 0.629672 | 7.4:+12950835 | None:intergenic |
| AATACCTGCAATTGAACCAA+GGG | 0.629721 | 7.4:+12949160 | None:intergenic |
| GCATCCAATGGTTAGACATG+AGG | 0.635787 | 7.4:-12949192 | MS.gene97026:CDS |
| CAATACCTGCAATTGAACCA+AGG | 0.638670 | 7.4:+12949159 | None:intergenic |
| AGATGTGAATGAGCATCCAA+TGG | 0.641853 | 7.4:-12949204 | MS.gene97026:CDS |
| GGAAAGATCATTAAGAACTG+AGG | 0.652674 | 7.4:+12950223 | None:intergenic |
| TTTGTGCAACAAGAGGCTCT+GGG | 0.657645 | 7.4:+12948002 | None:intergenic |
| GGAGTAACCTAGAATAAGGG+CGG | 0.721114 | 7.4:+12950828 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGTAAATTAATAATATTA+GGG | - | chr7.4:12949042-12949061 | MS.gene97026:intron | 10.0% |
| !!! | TATAAGTTATTTTTATGTTA+AGG | + | chr7.4:12948298-12948317 | None:intergenic | 10.0% |
| !! | AATTAAATAGAAATCAAACT+TGG | + | chr7.4:12950597-12950616 | None:intergenic | 15.0% |
| !! | GGTTGTAAATTAATAATATT+AGG | - | chr7.4:12949041-12949060 | MS.gene97026:intron | 15.0% |
| !!! | TTTTTAATCTATCTTCTATT+TGG | - | chr7.4:12950296-12950315 | MS.gene97026:CDS | 15.0% |
| !! | AAACATGAATTTATTTCCTT+TGG | - | chr7.4:12950375-12950394 | MS.gene97026:intron | 20.0% |
| !! | ACTTTGAATTAAAAACTAAC+AGG | + | chr7.4:12950008-12950027 | None:intergenic | 20.0% |
| !! | AGTGATAAATAAAAACATTG+AGG | + | chr7.4:12950675-12950694 | None:intergenic | 20.0% |
| !! | ATAAGTTGTTTATCCAAATA+GGG | - | chr7.4:12948272-12948291 | MS.gene97026:intron | 20.0% |
| !!! | AAATTCATGTTTTAGTGATT+TGG | + | chr7.4:12950367-12950386 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | - | chr7.4:12948400-12948419 | MS.gene97026:intron | 20.0% |
| !!! | GTTCTATGTTTAGTAAATTT+TGG | + | chr7.4:12950427-12950446 | None:intergenic | 20.0% |
| !!! | TGCATTTATCTTTTTATACA+TGG | + | chr7.4:12949759-12949778 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | - | chr7.4:12948401-12948420 | MS.gene97026:intron | 20.0% |
| !!! | TTTTAAAGTTTTATGCTTCT+TGG | - | chr7.4:12950030-12950049 | MS.gene97026:CDS | 20.0% |
| !!! | TTTTTGTTTATAGTTCATTG+CGG | - | chr7.4:12948180-12948199 | MS.gene97026:intron | 20.0% |
| ! | AAAAATTCAGAGAATCAAAC+AGG | + | chr7.4:12949493-12949512 | None:intergenic | 25.0% |
| ! | AAATTGAAGAGAAAAGGAAA+AGG | + | chr7.4:12948006-12948025 | None:intergenic | 25.0% |
| ! | AATTAAACTGAAGTCAAACT+TGG | + | chr7.4:12950505-12950524 | None:intergenic | 25.0% |
| ! | AATTGAAGAGAAAAGGAAAA+GGG | + | chr7.4:12948005-12948024 | None:intergenic | 25.0% |
| ! | ACAAAAGAACTATGTAAACA+GGG | + | chr7.4:12950734-12950753 | None:intergenic | 25.0% |
| ! | ACTAAGTTGTTTATCCAAAT+AGG | - | chr7.4:12948331-12948350 | MS.gene97026:intron | 25.0% |
| ! | ATGGTATTAATATTGCTTTG+TGG | - | chr7.4:12949727-12949746 | MS.gene97026:CDS | 25.0% |
| ! | ATTAAACTGAAGTCAAACTT+GGG | + | chr7.4:12950504-12950523 | None:intergenic | 25.0% |
| ! | ATTCACATCTCTAAGTATAT+TGG | + | chr7.4:12949595-12949614 | None:intergenic | 25.0% |
| ! | CTAAGTTGTTTATCCAAATA+GGG | - | chr7.4:12948332-12948351 | MS.gene97026:intron | 25.0% |
| ! | CTTGAAAAGTTGAAGTAAAA+TGG | + | chr7.4:12948156-12948175 | None:intergenic | 25.0% |
| ! | GATAAGTTGTTTATCCAAAT+AGG | - | chr7.4:12948271-12948290 | MS.gene97026:intron | 25.0% |
| ! | GCAATGAACTATAAACAAAA+AGG | + | chr7.4:12948181-12948200 | None:intergenic | 25.0% |
| ! | GTTTGCAAATAAAAAAGTAG+AGG | - | chr7.4:12949968-12949987 | MS.gene97026:CDS | 25.0% |
| ! | TTGGTTCAACTAAAAAAGTT+GGG | + | chr7.4:12950408-12950427 | None:intergenic | 25.0% |
| ! | TTGTTAAGTGTATTATTGCA+TGG | - | chr7.4:12948444-12948463 | MS.gene97026:intron | 25.0% |
| !! | AAATAAAAAAGTAGAGGTGT+TGG | - | chr7.4:12949974-12949993 | MS.gene97026:CDS | 25.0% |
| !! | ATACCTTCTTGAAGAATTTT+CGG | - | chr7.4:12950780-12950799 | MS.gene97026:intron | 25.0% |
| !! | GTCTAAGTAAATGTTCTTTT+TGG | - | chr7.4:12949827-12949846 | MS.gene97026:intron | 25.0% |
| !! | GTTGCAACTTTTAGTATTTA+TGG | - | chr7.4:12949882-12949901 | MS.gene97026:CDS | 25.0% |
| !! | TAATTTGTATGTTGCTAACT+CGG | - | chr7.4:12949020-12949039 | MS.gene97026:intron | 25.0% |
| !! | TTTGGTTCAACTAAAAAAGT+TGG | + | chr7.4:12950409-12950428 | None:intergenic | 25.0% |
| !!! | ACTGTATTTGCTGAAATTTT+AGG | - | chr7.4:12949518-12949537 | MS.gene97026:intron | 25.0% |
| !!! | ATTTTAGGTTGCATATGTTT+TGG | - | chr7.4:12949533-12949552 | MS.gene97026:intron | 25.0% |
| !!! | TTTCTATTTAATTTTGCCTC+TGG | - | chr7.4:12950604-12950623 | MS.gene97026:intron | 25.0% |
| !!! | TTTTAGGTTGCATATGTTTT+GGG | - | chr7.4:12949534-12949553 | MS.gene97026:intron | 25.0% |
| AAAAGTGACACATTCAGAAA+AGG | + | chr7.4:12948664-12948683 | None:intergenic | 30.0% | |
| AAAGTTAAGCAGCAACATTA+AGG | + | chr7.4:12949463-12949482 | None:intergenic | 30.0% | |
| AACATACAAATTACTCTCTC+TGG | + | chr7.4:12949013-12949032 | None:intergenic | 30.0% | |
| AAGAGATTCATCGAATTTGT+TGG | - | chr7.4:12948503-12948522 | MS.gene97026:intron | 30.0% | |
| AATACATGTTTCATTCTGGA+AGG | + | chr7.4:12948100-12948119 | None:intergenic | 30.0% | |
| ATGCTAGAATTTGAAAGATC+AGG | - | chr7.4:12950850-12950869 | MS.gene97026:CDS | 30.0% | |
| CTGTTGCAGTCAATAATATA+TGG | - | chr7.4:12949708-12949727 | MS.gene97026:CDS | 30.0% | |
| GACAAAAGAACTATGTAAAC+AGG | + | chr7.4:12950735-12950754 | None:intergenic | 30.0% | |
| GACTAAACAGACTATATAAC+AGG | + | chr7.4:12950263-12950282 | None:intergenic | 30.0% | |
| GCTGTAAAATTGAAGAGAAA+AGG | + | chr7.4:12948012-12948031 | None:intergenic | 30.0% | |
| GTAGATACTTCTTTGTGATT+TGG | - | chr7.4:12950237-12950256 | MS.gene97026:CDS | 30.0% | |
| TCAGAAAAGGAAGAAATAGA+AGG | + | chr7.4:12948651-12948670 | None:intergenic | 30.0% | |
| TGATTGATTAAGTCCCTATT+TGG | + | chr7.4:12948417-12948436 | None:intergenic | 30.0% | |
| TGCTAGAATTTGAAAGATCA+GGG | - | chr7.4:12950851-12950870 | MS.gene97026:CDS | 30.0% | |
| TGGTTCAACTAAAAAAGTTG+GGG | + | chr7.4:12950407-12950426 | None:intergenic | 30.0% | |
| TGTTTGTTTCAATCTTGCTT+AGG | - | chr7.4:12948712-12948731 | MS.gene97026:intron | 30.0% | |
| TTCCAATACATGTTTCATTC+TGG | + | chr7.4:12948104-12948123 | None:intergenic | 30.0% | |
| TTCCAGAATGAAACATGTAT+TGG | - | chr7.4:12948099-12948118 | MS.gene97026:intron | 30.0% | |
| ! | ACACTACTATCTTTTTCTCT+TGG | - | chr7.4:12950940-12950959 | MS.gene97026:CDS | 30.0% |
| ! | ATGTTTCAATAAAGCACTCT+TGG | + | chr7.4:12949179-12949198 | None:intergenic | 30.0% |
| ! | GCATTTAAAACCACATACTA+TGG | - | chr7.4:12949672-12949691 | MS.gene97026:CDS | 30.0% |
| ! | GTTTAAAAGTACGAACGATA+TGG | + | chr7.4:12949326-12949345 | None:intergenic | 30.0% |
| ! | TATATTATTGACTGCAACAG+AGG | + | chr7.4:12949708-12949727 | None:intergenic | 30.0% |
| ! | TTTTATGTTAAGGCCCTATT+TGG | + | chr7.4:12948288-12948307 | None:intergenic | 30.0% |
| !! | AAAGTTTTATGCTTCTTGGT+TGG | - | chr7.4:12950034-12950053 | MS.gene97026:CDS | 30.0% |
| !!! | TTCTCTTTTGAAGCATAGTT+TGG | - | chr7.4:12948775-12948794 | MS.gene97026:intron | 30.0% |
| AAAACATCAGGTCAATCTAG+AGG | - | chr7.4:12949297-12949316 | MS.gene97026:intron | 35.0% | |
| AAAATCTTCAGCAAGTACCA+AGG | + | chr7.4:12950896-12950915 | None:intergenic | 35.0% | |
| AAACATCAGGTCAATCTAGA+GGG | - | chr7.4:12949298-12949317 | MS.gene97026:intron | 35.0% | |
| AAAGGGAGTAACCTAGAATA+AGG | + | chr7.4:12947988-12948007 | None:intergenic | 35.0% | |
| AAGGGAGTAACCTAGAATAA+GGG | + | chr7.4:12947987-12948006 | None:intergenic | 35.0% | |
| AATACCTGCAATTGAACCAA+GGG | + | chr7.4:12949652-12949671 | None:intergenic | 35.0% | |
| ACTTCACATGAGAAAACATC+AGG | - | chr7.4:12949285-12949304 | MS.gene97026:intron | 35.0% | |
| AGCGTCTAACTATTAGTTCA+TGG | - | chr7.4:12950091-12950110 | MS.gene97026:intron | 35.0% | |
| ATTCGTTGGTCCATGTAAAA+AGG | + | chr7.4:12950170-12950189 | None:intergenic | 35.0% | |
| CGTTGAACCATTATATTCGT+TGG | - | chr7.4:12949345-12949364 | MS.gene97026:intron | 35.0% | |
| GAAGAAATAGAAGGCTACTA+CGG | + | chr7.4:12948642-12948661 | None:intergenic | 35.0% | |
| GCGTCTAACTATTAGTTCAT+GGG | - | chr7.4:12950092-12950111 | MS.gene97026:intron | 35.0% | |
| GGAAAGATCATTAAGAACTG+AGG | + | chr7.4:12948589-12948608 | None:intergenic | 35.0% | |
| TAATACGTGACAAAGCCTTA+TGG | + | chr7.4:12950194-12950213 | None:intergenic | 35.0% | |
| TACTTCTCGATGAGGAAAAA+GGG | - | chr7.4:12949068-12949087 | MS.gene97026:intron | 35.0% | |
| TCACATGATTCCATAGTATG+TGG | + | chr7.4:12949685-12949704 | None:intergenic | 35.0% | |
| TGACTCAGTTCATATCTGTA+TGG | - | chr7.4:12949905-12949924 | MS.gene97026:CDS | 35.0% | |
| TGAGCAGTTCAACTTAACTT+AGG | - | chr7.4:12949860-12949879 | MS.gene97026:intron | 35.0% | |
| TTAAGAACTGAGGTTAATGC+AGG | + | chr7.4:12948579-12948598 | None:intergenic | 35.0% | |
| TTACTTCTCGATGAGGAAAA+AGG | - | chr7.4:12949067-12949086 | MS.gene97026:intron | 35.0% | |
| TTATGCTTCTTGGTTGGATT+TGG | - | chr7.4:12950040-12950059 | MS.gene97026:CDS | 35.0% | |
| TTCTGCTCCAACGAATATAA+TGG | + | chr7.4:12949355-12949374 | None:intergenic | 35.0% | |
| TTGTATGAATTGCACGTAAG+TGG | - | chr7.4:12949254-12949273 | MS.gene97026:CDS | 35.0% | |
| TTGTTTATAGTTCATTGCGG+AGG | - | chr7.4:12948183-12948202 | MS.gene97026:intron | 35.0% | |
| ! | AACCAGCTTTTCTTTCTCTT+TGG | - | chr7.4:12948473-12948492 | MS.gene97026:intron | 35.0% |
| ! | CTTCAAGAAGGTATACACTT+TGG | + | chr7.4:12950774-12950793 | None:intergenic | 35.0% |
| ! | CTTTTTGCACTTCGAAATGA+TGG | - | chr7.4:12949112-12949131 | MS.gene97026:intron | 35.0% |
| ! | GAGTGCTTTATTGAAACATG+AGG | - | chr7.4:12949180-12949199 | MS.gene97026:CDS | 35.0% |
| ! | TTGGTCAACTAAGGTTTGTT+TGG | - | chr7.4:12948957-12948976 | MS.gene97026:intron | 35.0% |
| !! | ATTTGGTCGACTCTTTTTAC+TGG | - | chr7.4:12950313-12950332 | MS.gene97026:CDS | 35.0% |
| !!! | GTTGGTTCTACCTTTTTACA+TGG | - | chr7.4:12950157-12950176 | MS.gene97026:intron | 35.0% |
| AACTGAGGTTAATGCAGGTA+TGG | + | chr7.4:12948574-12948593 | None:intergenic | 40.0% | |
| AAGATCAGGGAAATCGTTTG+AGG | - | chr7.4:12950864-12950883 | MS.gene97026:CDS | 40.0% | |
| ACGAAGCTGCATTTGCATTA+GGG | - | chr7.4:12948529-12948548 | MS.gene97026:intron | 40.0% | |
| AGATGTGAATGAGCATCCAA+TGG | - | chr7.4:12949605-12949624 | MS.gene97026:intron | 40.0% | |
| AGTCAAACTTGGGTAGCATT+TGG | + | chr7.4:12950494-12950513 | None:intergenic | 40.0% | |
| ATGGACCAACGAATACCATA+AGG | - | chr7.4:12950176-12950195 | MS.gene97026:intron | 40.0% | |
| CAATACCTGCAATTGAACCA+AGG | + | chr7.4:12949653-12949672 | None:intergenic | 40.0% | |
| CATATCTGTATGGTTGTGAC+TGG | - | chr7.4:12949915-12949934 | MS.gene97026:CDS | 40.0% | |
| CTGCCGAAAATTCTTCAAGA+AGG | + | chr7.4:12950786-12950805 | None:intergenic | 40.0% | |
| GACAATCTTTCTGTTCTCGT+TGG | - | chr7.4:12950139-12950158 | MS.gene97026:intron | 40.0% | |
| GACTTAAACGGAGAAATAGC+AGG | + | chr7.4:12948899-12948918 | None:intergenic | 40.0% | |
| GCAGGATCAACAGACTTAAA+CGG | + | chr7.4:12948911-12948930 | None:intergenic | 40.0% | |
| GTTCTTCAGTTGGTCAACTA+AGG | - | chr7.4:12948948-12948967 | MS.gene97026:intron | 40.0% | |
| TAGGGATTTACTTCTCGATG+AGG | - | chr7.4:12949060-12949079 | MS.gene97026:intron | 40.0% | |
| TGACAACTTTGTGCAACAAG+AGG | + | chr7.4:12950817-12950836 | None:intergenic | 40.0% | |
| TGCCAAAGAGAAAGAAAAGC+TGG | + | chr7.4:12948478-12948497 | None:intergenic | 40.0% | |
| TTTGCACTTCGAAATGATGG+TGG | - | chr7.4:12949115-12949134 | MS.gene97026:intron | 40.0% | |
| ! | AAGCAGCTTTGTCTTGCAAT+TGG | + | chr7.4:12949560-12949579 | None:intergenic | 40.0% |
| ! | ATCGTTTGAGGTATACACCT+TGG | - | chr7.4:12950876-12950895 | MS.gene97026:CDS | 40.0% |
| ! | CAAAGCCTTATGGTATTCGT+TGG | + | chr7.4:12950184-12950203 | None:intergenic | 40.0% |
| ! | TCGCTGATTAAGTCCCTATT+TGG | + | chr7.4:12948348-12948367 | None:intergenic | 40.0% |
| !! | AAAAGTAGAGGTGTTGGAGA+AGG | - | chr7.4:12949980-12949999 | MS.gene97026:CDS | 40.0% |
| !! | GCTGCTATTGTTGATTCCTT+GGG | - | chr7.4:12949151-12949170 | MS.gene97026:intron | 40.0% |
| !! | TGCTGCTATTGTTGATTCCT+TGG | - | chr7.4:12949150-12949169 | MS.gene97026:intron | 40.0% |
| ACCAACTGAAGAACAAGAGC+TGG | + | chr7.4:12948942-12948961 | None:intergenic | 45.0% | |
| ACTACCTCATGGCGAACAAT+GGG | + | chr7.4:12948618-12948637 | None:intergenic | 45.0% | |
| CACGAAGCTGCATTTGCATT+AGG | - | chr7.4:12948528-12948547 | MS.gene97026:intron | 45.0% | |
| GCATCCAATGGTTAGACATG+AGG | - | chr7.4:12949617-12949636 | MS.gene97026:intron | 45.0% | |
| GGAGTAACCTAGAATAAGGG+CGG | + | chr7.4:12947984-12948003 | None:intergenic | 45.0% | |
| GTCTGTTTAGTCTCTGCATC+TGG | - | chr7.4:12950271-12950290 | MS.gene97026:CDS | 45.0% | |
| TACTACCTCATGGCGAACAA+TGG | + | chr7.4:12948619-12948638 | None:intergenic | 45.0% | |
| TTCTCTCTTCGCAACCTCAA+AGG | - | chr7.4:12947944-12947963 | MS.gene97026:intron | 45.0% | |
| TTTGTGCAACAAGAGGCTCT+GGG | + | chr7.4:12950810-12950829 | None:intergenic | 45.0% | |
| ! | TAAAGCACTCTTGGAACCCA+AGG | + | chr7.4:12949170-12949189 | None:intergenic | 45.0% |
| AAAGTTGGGGTAGCTGCCAA+AGG | + | chr7.4:12950394-12950413 | None:intergenic | 50.0% | |
| ACTGAAGAACAAGAGCTGGC+CGG | + | chr7.4:12948938-12948957 | None:intergenic | 50.0% | |
| ATGGCGAACAATGGGATGCA+AGG | + | chr7.4:12948610-12948629 | None:intergenic | 50.0% | |
| CAATTGGAGGACGCATGAAC+AGG | + | chr7.4:12950974-12950993 | None:intergenic | 50.0% | |
| CTGTCATGTGACTCTACCAG+AGG | + | chr7.4:12950623-12950642 | None:intergenic | 50.0% | |
| CTTTGTGCAACAAGAGGCTC+TGG | + | chr7.4:12950811-12950830 | None:intergenic | 50.0% | |
| GAAGCCCTTGGTTCAATTGC+AGG | - | chr7.4:12949645-12949664 | MS.gene97026:CDS | 50.0% | |
| GCAGCCTCATGTCTAACCAT+TGG | + | chr7.4:12949624-12949643 | None:intergenic | 50.0% | |
| GCCAGCTCTTGTTCTTCAGT+TGG | - | chr7.4:12948938-12948957 | MS.gene97026:intron | 50.0% | |
| GCTACTACGGTACTACCTCA+TGG | + | chr7.4:12948629-12948648 | None:intergenic | 50.0% | |
| GGATTCTGATCCAGCTCAAG+AGG | - | chr7.4:12948796-12948815 | MS.gene97026:intron | 50.0% | |
| GTTTCTCGAACCTCTTGAGC+TGG | + | chr7.4:12948809-12948828 | None:intergenic | 50.0% | |
| !! | GAAGAGTGCTCTGAAGCGTT+CGG | + | chr7.4:12947927-12947946 | None:intergenic | 50.0% |
| AGTCCAACAGCAACTCGCAC+AGG | + | chr7.4:12947889-12947908 | None:intergenic | 55.0% | |
| CGCTTCGTGGTCATCAGAGA+TGG | - | chr7.4:12947856-12947875 | MS.gene97026:intron | 55.0% | |
| CTAGAATAAGGGCGGTGCGA+GGG | + | chr7.4:12947976-12947995 | None:intergenic | 55.0% | |
| GCATCCCATTGTTCGCCATG+AGG | - | chr7.4:12948611-12948630 | MS.gene97026:intron | 55.0% | |
| GTCTGTTGATCCTGCAGCAC+CGG | - | chr7.4:12948916-12948935 | MS.gene97026:intron | 55.0% | |
| GTTCCTGTGCGAGTTGCTGT+TGG | - | chr7.4:12947883-12947902 | MS.gene97026:intron | 55.0% | |
| TAGAATAAGGGCGGTGCGAG+GGG | + | chr7.4:12947975-12947994 | None:intergenic | 55.0% | |
| ! | GAAGCGTTCGGAGATTGGCT+GGG | + | chr7.4:12947915-12947934 | None:intergenic | 55.0% |
| ! | GCTGAAGCACTAGGCGCTAT+TGG | - | chr7.4:12948737-12948756 | MS.gene97026:intron | 55.0% |
| ! | GCTTAGGCAGCTGAAGCACT+AGG | - | chr7.4:12948728-12948747 | MS.gene97026:intron | 55.0% |
| ! | TGAAGCGTTCGGAGATTGGC+TGG | + | chr7.4:12947916-12947935 | None:intergenic | 55.0% |
| !! | GCTCTGAAGCGTTCGGAGAT+TGG | + | chr7.4:12947920-12947939 | None:intergenic | 55.0% |
| CATGAGGCTGCTGAAGCCCT+TGG | - | chr7.4:12949633-12949652 | MS.gene97026:CDS | 60.0% | |
| CCTAGAATAAGGGCGGTGCG+AGG | + | chr7.4:12947977-12947996 | None:intergenic | 60.0% | |
| CCTCGCACCGCCCTTATTCT+AGG | - | chr7.4:12947974-12947993 | MS.gene97026:CDS | 60.0% | |
| CGCTAAACGACGTCGCTTCG+TGG | - | chr7.4:12947843-12947862 | MS.gene97026:CDS | 60.0% | |
| AATAAGGGCGGTGCGAGGGG+CGG | + | chr7.4:12947972-12947991 | None:intergenic | 65.0% | |
| ATAAGGGCGGTGCGAGGGGC+GGG | + | chr7.4:12947971-12947990 | None:intergenic | 70.0% | |
| !! | CAAGAGCTGGCCGGTGCTGC+AGG | + | chr7.4:12948929-12948948 | None:intergenic | 70.0% |
| TAAGGGCGGTGCGAGGGGCG+GGG | + | chr7.4:12947970-12947989 | None:intergenic | 75.0% | |
| TGCGAGGGGCGGGGCCTTTG+AGG | + | chr7.4:12947961-12947980 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 12947830 | 12951001 | 12947830 | ID=MS.gene97026 |
| chr7.4 | mRNA | 12947830 | 12951001 | 12947830 | ID=MS.gene97026.t1;Parent=MS.gene97026 |
| chr7.4 | exon | 12950836 | 12951001 | 12950836 | ID=MS.gene97026.t1.exon1;Parent=MS.gene97026.t1 |
| chr7.4 | CDS | 12950836 | 12951001 | 12950836 | ID=cds.MS.gene97026.t1;Parent=MS.gene97026.t1 |
| chr7.4 | exon | 12950199 | 12950332 | 12950199 | ID=MS.gene97026.t1.exon2;Parent=MS.gene97026.t1 |
| chr7.4 | CDS | 12950199 | 12950332 | 12950199 | ID=cds.MS.gene97026.t1;Parent=MS.gene97026.t1 |
| chr7.4 | exon | 12949862 | 12950097 | 12949862 | ID=MS.gene97026.t1.exon3;Parent=MS.gene97026.t1 |
| chr7.4 | CDS | 12949862 | 12950097 | 12949862 | ID=cds.MS.gene97026.t1;Parent=MS.gene97026.t1 |
| chr7.4 | exon | 12949630 | 12949768 | 12949630 | ID=MS.gene97026.t1.exon4;Parent=MS.gene97026.t1 |
| chr7.4 | CDS | 12949630 | 12949768 | 12949630 | ID=cds.MS.gene97026.t1;Parent=MS.gene97026.t1 |
| chr7.4 | exon | 12949165 | 12949291 | 12949165 | ID=MS.gene97026.t1.exon5;Parent=MS.gene97026.t1 |
| chr7.4 | CDS | 12949165 | 12949291 | 12949165 | ID=cds.MS.gene97026.t1;Parent=MS.gene97026.t1 |
| chr7.4 | exon | 12947946 | 12948064 | 12947946 | ID=MS.gene97026.t1.exon6;Parent=MS.gene97026.t1 |
| chr7.4 | CDS | 12947946 | 12948064 | 12947946 | ID=cds.MS.gene97026.t1;Parent=MS.gene97026.t1 |
| chr7.4 | exon | 12947830 | 12947862 | 12947830 | ID=MS.gene97026.t1.exon7;Parent=MS.gene97026.t1 |
| chr7.4 | CDS | 12947830 | 12947862 | 12947830 | ID=cds.MS.gene97026.t1;Parent=MS.gene97026.t1 |
| Gene Sequence |
| Protein sequence |
