Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97558.t1 | XP_003621403.1 | 99.8 | 480 | 1 | 0 | 1 | 480 | 1 | 480 | 1.80E-277 | 964.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97558.t1 | Q96558 | 95.6 | 480 | 21 | 0 | 1 | 480 | 1 | 480 | 1.6e-271 | 936.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97558.t1 | G7L571 | 99.8 | 480 | 1 | 0 | 1 | 480 | 1 | 480 | 1.3e-277 | 964.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050083 | MS.gene97558 | 0.808328 | 3.27E-50 | -1.69E-46 |
| MS.gene057081 | MS.gene97558 | 0.806663 | 7.37E-50 | -1.69E-46 |
| MS.gene057494 | MS.gene97558 | 0.821844 | 3.25E-53 | -1.69E-46 |
| MS.gene058486 | MS.gene97558 | 0.806477 | 8.07E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97558.t1 | MTR_7g012950 | 99.792 | 480 | 1 | 0 | 1 | 480 | 1 | 480 | 0.0 | 990 |
| MS.gene97558.t1 | MTR_5g043970 | 87.110 | 481 | 61 | 1 | 1 | 480 | 1 | 481 | 0.0 | 888 |
| MS.gene97558.t1 | MTR_4g082990 | 83.333 | 480 | 80 | 0 | 1 | 480 | 1 | 480 | 0.0 | 850 |
| MS.gene97558.t1 | MTR_4g109360 | 75.476 | 473 | 114 | 2 | 3 | 473 | 4 | 476 | 0.0 | 761 |
| MS.gene97558.t1 | MTR_6g014890 | 62.136 | 103 | 37 | 1 | 12 | 114 | 16 | 116 | 1.69e-35 | 130 |
| MS.gene97558.t1 | MTR_6g014930 | 56.436 | 101 | 21 | 2 | 17 | 117 | 1 | 78 | 3.73e-25 | 99.0 |
| MS.gene97558.t1 | MTR_6g014530 | 45.736 | 129 | 36 | 2 | 14 | 142 | 8 | 102 | 7.36e-25 | 99.0 |
| MS.gene97558.t1 | MTR_6g033430 | 72.222 | 72 | 20 | 0 | 64 | 135 | 1 | 72 | 2.22e-24 | 96.7 |
| MS.gene97558.t1 | MTR_6g014840 | 58.621 | 87 | 27 | 1 | 1 | 87 | 1 | 78 | 4.50e-24 | 95.9 |
| MS.gene97558.t1 | MTR_6g014870 | 54.945 | 91 | 18 | 1 | 49 | 139 | 16 | 83 | 7.96e-21 | 89.4 |
| MS.gene97558.t1 | MTR_6g014850 | 36.813 | 182 | 54 | 6 | 174 | 348 | 71 | 198 | 4.32e-18 | 83.6 |
| MS.gene97558.t1 | MTR_6g014850 | 48.039 | 102 | 26 | 2 | 1 | 102 | 1 | 75 | 3.44e-17 | 80.9 |
| MS.gene97558.t1 | MTR_6g014820 | 46.739 | 92 | 13 | 1 | 1 | 92 | 23 | 78 | 7.98e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97558.t1 | AT3G29360 | 91.250 | 480 | 42 | 0 | 1 | 480 | 1 | 480 | 0.0 | 924 |
| MS.gene97558.t1 | AT3G29360 | 91.250 | 480 | 42 | 0 | 1 | 480 | 1 | 480 | 0.0 | 924 |
| MS.gene97558.t1 | AT5G15490 | 91.042 | 480 | 43 | 0 | 1 | 480 | 1 | 480 | 0.0 | 920 |
| MS.gene97558.t1 | AT5G39320 | 90.167 | 478 | 47 | 0 | 1 | 478 | 1 | 478 | 0.0 | 911 |
| MS.gene97558.t1 | AT1G26570 | 84.407 | 481 | 74 | 1 | 1 | 480 | 1 | 481 | 0.0 | 858 |
| MS.gene97558.t1 | AT3G01010 | 83.436 | 163 | 22 | 2 | 318 | 480 | 1 | 158 | 5.87e-97 | 289 |
Find 112 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAGCAGATTTGACTTAT+TGG | 0.244863 | 7.4:+86589663 | MS.gene97558:CDS |
| GTTCCCTCAGCAAGGAATTC+CGG | 0.268634 | 7.4:-86589833 | None:intergenic |
| TTCACAGTTGTTGGACTCAT+TGG | 0.269285 | 7.4:-86590538 | None:intergenic |
| CTCACTTTCTTCACAGTTGT+TGG | 0.276565 | 7.4:-86590547 | None:intergenic |
| AATCCGGATCGTGTTCTTAT+TGG | 0.288816 | 7.4:+86589875 | MS.gene97558:CDS |
| AGCAGCAGATTTGACTTATT+GGG | 0.299764 | 7.4:+86589664 | MS.gene97558:CDS |
| TGGAAGCTGGTCGCTGTTCC+AGG | 0.310193 | 7.4:-86589489 | None:intergenic |
| CTCAACGCTAGTGTCGGTTT+TGG | 0.313062 | 7.4:+86590151 | MS.gene97558:CDS |
| GGTTTCATTGTTTACTCAAT+TGG | 0.314253 | 7.4:+86590742 | MS.gene97558:CDS |
| TGGATAGATCTCTCTGGATT+TGG | 0.323196 | 7.4:-86590477 | None:intergenic |
| AGTCAAATCTGCTGCTTTGC+CGG | 0.327091 | 7.4:-86589657 | None:intergenic |
| TATCCATGAACAAGTTTGAT+TGG | 0.332354 | 7.4:+86590494 | MS.gene97558:CDS |
| GCTGTTCCAGGCTGCAATGC+GGG | 0.342501 | 7.4:-86589477 | None:intergenic |
| TTCCCTCAGCAAGGAATTCC+GGG | 0.356418 | 7.4:-86589832 | None:intergenic |
| CGAAATCCTCTGAGCCAAAA+AGG | 0.362463 | 7.4:-86590029 | None:intergenic |
| ATTCCGGGTTTGATAGAATC+TGG | 0.368775 | 7.4:-86589817 | None:intergenic |
| AGATACTAACCACAAATCTT+TGG | 0.407402 | 7.4:+86589975 | MS.gene97558:CDS |
| CAAGGTTCAAGATATCCTTC+TGG | 0.418226 | 7.4:-86590186 | None:intergenic |
| TTCCTGAGGTTGCAGAGTAC+TGG | 0.418380 | 7.4:+86590233 | MS.gene97558:CDS |
| GCTGAGAAGTTACGTGAGAT+TGG | 0.419372 | 7.4:+86590721 | MS.gene97558:CDS |
| TGAAGAGTGTTTATGCTCAC+TGG | 0.422588 | 7.4:+86589939 | MS.gene97558:CDS |
| GTCCCAATCAAACTTGTTCA+TGG | 0.427996 | 7.4:-86590497 | None:intergenic |
| TTTGGTCCTCGGTAACTTGT+GGG | 0.434652 | 7.4:-86590459 | None:intergenic |
| CTCAGCAGACCAAAGATTTG+TGG | 0.441168 | 7.4:-86589984 | None:intergenic |
| AGAGCAATGACTGCCATTGT+TGG | 0.441868 | 7.4:-86589410 | None:intergenic |
| TGAAGAAAGTGAGTGTGGTT+TGG | 0.443618 | 7.4:+86590557 | MS.gene97558:CDS |
| AAGATTTGCTGCATTGGTGC+TGG | 0.447077 | 7.4:+86589374 | MS.gene97558:CDS |
| ATCCATGAACAAGTTTGATT+GGG | 0.448775 | 7.4:+86590495 | MS.gene97558:CDS |
| GAAGAAAGTGAGTGTGGTTT+GGG | 0.451541 | 7.4:+86590558 | MS.gene97558:CDS |
| ATCTCTCTGGATTTGGTCCT+CGG | 0.457354 | 7.4:-86590470 | None:intergenic |
| TCAGCACTTTGCGAGGCAAC+TGG | 0.459252 | 7.4:+86590067 | MS.gene97558:CDS |
| ATCGTGTTCTTATTGGAGGC+AGG | 0.460167 | 7.4:+86589882 | MS.gene97558:CDS |
| TCAAGGCCAGGTTCATAGAT+TGG | 0.464203 | 7.4:-86589509 | None:intergenic |
| TTACTCAATTGGAAAACCAT+TGG | 0.475272 | 7.4:+86590753 | MS.gene97558:CDS |
| CTCATTGGCTGCAAGTGGAT+TGG | 0.475733 | 7.4:-86590523 | None:intergenic |
| TTCCAGTACTCTGCAACCTC+AGG | 0.476120 | 7.4:-86590235 | None:intergenic |
| CCGGATCGTGTTCTTATTGG+AGG | 0.477174 | 7.4:+86589878 | MS.gene97558:CDS |
| CAACATCTGTGCTGAAGAAG+AGG | 0.478588 | 7.4:-86589562 | None:intergenic |
| ATTTGGTCCTCGGTAACTTG+TGG | 0.482296 | 7.4:-86590460 | None:intergenic |
| CAACTACACGGTTCACAAAA+CGG | 0.483047 | 7.4:-86590291 | None:intergenic |
| CTTTATCGCCGAGTAGCCCT+TGG | 0.484533 | 7.4:-86590417 | None:intergenic |
| GTATCTGTATTCTGACTGAA+TGG | 0.485576 | 7.4:+86590611 | MS.gene97558:CDS |
| GTCGGCACTGACTCAAGGAT+TGG | 0.493453 | 7.4:+86590118 | MS.gene97558:CDS |
| GTGGTTAGTATCTGCTCCTC+GGG | 0.496401 | 7.4:-86589965 | None:intergenic |
| TGTGGTTAGTATCTGCTCCT+CGG | 0.501604 | 7.4:-86589966 | None:intergenic |
| AGGAGTCTCCCTTGTGTCAC+CGG | 0.503396 | 7.4:-86590380 | None:intergenic |
| TGTTCATGGATAGATCTCTC+TGG | 0.509208 | 7.4:-86590483 | None:intergenic |
| AAAACTCAGGGTCTTGGTGC+CGG | 0.513040 | 7.4:+86589638 | MS.gene97558:CDS |
| TAACACCCCGACTAAAACTC+AGG | 0.515317 | 7.4:+86589625 | MS.gene97558:CDS |
| GTCGACAACAGCCACTTCAA+TGG | 0.519962 | 7.4:-86589444 | None:intergenic |
| TTGGAAAACCATTGGATGCA+TGG | 0.520140 | 7.4:+86590761 | MS.gene97558:CDS |
| TTGGACTCATTGGCTGCAAG+TGG | 0.522664 | 7.4:-86590528 | None:intergenic |
| TAGCCCTTGGCAAACATCAA+TGG | 0.532703 | 7.4:-86590404 | None:intergenic |
| ACACTAGCGTTGAGGAACTT+AGG | 0.534232 | 7.4:-86590142 | None:intergenic |
| GAAGAGTGTTTATGCTCACT+GGG | 0.534298 | 7.4:+86589940 | MS.gene97558:CDS |
| CCTGCCATTGATGTTTGCCA+AGG | 0.535085 | 7.4:+86590400 | MS.gene97558:CDS |
| CTGTTCCAGGCTGCAATGCG+GGG | 0.539741 | 7.4:-86589476 | None:intergenic |
| CTAAACCCCGCATTGCAGCC+TGG | 0.548047 | 7.4:+86589471 | MS.gene97558:CDS |
| TCCTTGAGCCATGCATCCAA+TGG | 0.549377 | 7.4:-86590769 | None:intergenic |
| TGGGTCGAATATGCTTATGT+TGG | 0.549577 | 7.4:-86590440 | None:intergenic |
| GTCTACATCTGCGAGTGCAA+TGG | 0.551640 | 7.4:+86590208 | MS.gene97558:CDS |
| ATGGTGAAGATTTGCTGCAT+TGG | 0.551855 | 7.4:+86589368 | MS.gene97558:CDS |
| CCTTGGCAAACATCAATGGC+AGG | 0.551877 | 7.4:-86590400 | None:intergenic |
| CAGCTTCCAATCTATGAACC+TGG | 0.553953 | 7.4:+86589503 | MS.gene97558:CDS |
| TGGTGGATCTTGCTTCCAGA+AGG | 0.555042 | 7.4:+86590171 | MS.gene97558:CDS |
| CGCTGTTCCAGGCTGCAATG+CGG | 0.557528 | 7.4:-86589478 | None:intergenic |
| GATGTTTGCCAAGGGCTACT+CGG | 0.558346 | 7.4:+86590409 | MS.gene97558:CDS |
| CCGACTAAAACTCAGGGTCT+TGG | 0.559330 | 7.4:+86589632 | MS.gene97558:CDS |
| ATGCTGTCGGCACTGACTCA+AGG | 0.561093 | 7.4:+86590113 | MS.gene97558:CDS |
| TGCATTGGTGCTGGATATGT+CGG | 0.561538 | 7.4:+86589383 | MS.gene97558:CDS |
| TTTACAACATCGTCAAGGCC+AGG | 0.562538 | 7.4:-86589521 | None:intergenic |
| CCTCCAATAAGAACACGATC+CGG | 0.563262 | 7.4:-86589878 | None:intergenic |
| TCAAGACACTTGATTATCAG+AGG | 0.564119 | 7.4:+86590641 | MS.gene97558:CDS |
| ACCATTGGATGCATGGCTCA+AGG | 0.567026 | 7.4:+86590768 | MS.gene97558:CDS |
| TGAGTCAGTGCCGACAGCAT+AGG | 0.569368 | 7.4:-86590110 | None:intergenic |
| TTCGCATTCAAGAAAGATAC+CGG | 0.570300 | 7.4:+86590361 | MS.gene97558:CDS |
| AGAAAGATACCGGTGACACA+AGG | 0.573409 | 7.4:+86590371 | MS.gene97558:CDS |
| TCGTGTTCTTATTGGAGGCA+GGG | 0.575320 | 7.4:+86589883 | MS.gene97558:CDS |
| TTTGTCAGACTTTGAGACAT+CGG | 0.579194 | 7.4:-86589708 | None:intergenic |
| CAACAAGTGGCCTATGCTGT+CGG | 0.580264 | 7.4:+86590100 | MS.gene97558:CDS |
| TGCAATGTCAGCACTTTGCG+AGG | 0.585037 | 7.4:+86590060 | MS.gene97558:CDS |
| TTGGCTGCAAGTGGATTGGA+TGG | 0.586131 | 7.4:-86590519 | None:intergenic |
| ACAACAGCCACTTCAATGGA+TGG | 0.588532 | 7.4:-86589440 | None:intergenic |
| TATCTGTATTCTGACTGAAT+GGG | 0.594057 | 7.4:+86590612 | MS.gene97558:CDS |
| CTGCCATTGATGTTTGCCAA+GGG | 0.597889 | 7.4:+86590401 | MS.gene97558:CDS |
| CAGGTTCATAGATTGGAAGC+TGG | 0.598328 | 7.4:-86589502 | None:intergenic |
| AACCCGGAATTCCTTGCTGA+GGG | 0.599051 | 7.4:+86589830 | MS.gene97558:CDS |
| TAAGTGTCCATCCATTGAAG+TGG | 0.603664 | 7.4:+86589433 | MS.gene97558:CDS |
| TTATGCTCACTGGGTTCCCG+AGG | 0.611107 | 7.4:+86589949 | MS.gene97558:CDS |
| ATTCCAGATTCTATCAAACC+CGG | 0.620754 | 7.4:+86589814 | MS.gene97558:CDS |
| AAGTTCCTCAACGCTAGTGT+CGG | 0.625351 | 7.4:+86590145 | MS.gene97558:CDS |
| AAACCCGGAATTCCTTGCTG+AGG | 0.626241 | 7.4:+86589829 | MS.gene97558:CDS |
| TGGTGCAAATATTCAACAAG+TGG | 0.626987 | 7.4:+86590087 | MS.gene97558:CDS |
| TGATTGCAGTTCCCTCAGCA+AGG | 0.627087 | 7.4:-86589841 | None:intergenic |
| TGAAGAAGAGGTTCTTGCCA+CGG | 0.630240 | 7.4:-86589550 | None:intergenic |
| CAAAACCGACACTAGCGTTG+AGG | 0.636214 | 7.4:-86590150 | None:intergenic |
| TGTCCCTGTCAAAACTGCTG+AGG | 0.636569 | 7.4:+86589751 | MS.gene97558:CDS |
| AGTACTCTGCAACCTCAGGA+AGG | 0.641636 | 7.4:-86590231 | None:intergenic |
| CGAGTGCAATGGCCTTCCTG+AGG | 0.644980 | 7.4:+86590219 | MS.gene97558:CDS |
| AACACCCCGACTAAAACTCA+GGG | 0.646593 | 7.4:+86589626 | MS.gene97558:CDS |
| GGAGGCAGGGAAACCCCTGA+AGG | 0.651550 | 7.4:+86589896 | MS.gene97558:CDS |
| ATATGTCGGTGGTCCAACAA+TGG | 0.658539 | 7.4:+86589397 | MS.gene97558:CDS |
| TGCACTCGCAGATGTAGACA+AGG | 0.662891 | 7.4:-86590204 | None:intergenic |
| GAAAGATACCGGTGACACAA+GGG | 0.663967 | 7.4:+86590372 | MS.gene97558:CDS |
| ATTGCTTTACAACATCGTCA+AGG | 0.664980 | 7.4:-86589526 | None:intergenic |
| AACTGTGAAGAAAGTGAGTG+TGG | 0.665071 | 7.4:+86590552 | MS.gene97558:CDS |
| GCTCAAGGATATGCCAGCTG+TGG | 0.666287 | 7.4:+86590783 | MS.gene97558:CDS |
| TGAACATAGATGCAACTACA+CGG | 0.683251 | 7.4:-86590303 | None:intergenic |
| ATTGGTGCTGGATATGTCGG+TGG | 0.703962 | 7.4:+86589386 | MS.gene97558:CDS |
| GAAGCAACAAAAGATGCACA+TGG | 0.706553 | 7.4:+86590589 | MS.gene97558:CDS |
| ATTCGACCCACAAGTTACCG+AGG | 0.712173 | 7.4:+86590453 | MS.gene97558:CDS |
| GATGTTGTAAAGCAATGCCG+TGG | 0.754742 | 7.4:+86589533 | MS.gene97558:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAGAGATCTTTTTAATC+CGG | + | chr7.4:86589859-86589878 | MS.gene97558:CDS | 25.0% |
| AACAAAAAGATCGCTATTCT+CGG | + | chr7.4:86590337-86590356 | MS.gene97558:CDS | 30.0% | |
| AGATACTAACCACAAATCTT+TGG | + | chr7.4:86589975-86589994 | MS.gene97558:CDS | 30.0% | |
| ATCCATGAACAAGTTTGATT+GGG | + | chr7.4:86590495-86590514 | MS.gene97558:CDS | 30.0% | |
| GGTTTCATTGTTTACTCAAT+TGG | + | chr7.4:86590742-86590761 | MS.gene97558:CDS | 30.0% | |
| TATCCATGAACAAGTTTGAT+TGG | + | chr7.4:86590494-86590513 | MS.gene97558:CDS | 30.0% | |
| TATCTGTATTCTGACTGAAT+GGG | + | chr7.4:86590612-86590631 | MS.gene97558:CDS | 30.0% | |
| TGTTGAAAAACATGTCTTTG+AGG | + | chr7.4:86589580-86589599 | MS.gene97558:CDS | 30.0% | |
| TTACTCAATTGGAAAACCAT+TGG | + | chr7.4:86590753-86590772 | MS.gene97558:CDS | 30.0% | |
| !!! | AAACCAGCATTTGTTTTTGA+TGG | + | chr7.4:86590682-86590701 | MS.gene97558:CDS | 30.0% |
| !!! | ATTTTGACTCACAATAGCAA+GGG | + | chr7.4:86589785-86589804 | MS.gene97558:CDS | 30.0% |
| ATTCCAGATTCTATCAAACC+CGG | + | chr7.4:86589814-86589833 | MS.gene97558:CDS | 35.0% | |
| ATTGCTTTACAACATCGTCA+AGG | - | chr7.4:86589529-86589548 | None:intergenic | 35.0% | |
| CTTCCATCAAAAACAAATGC+TGG | - | chr7.4:86590688-86590707 | None:intergenic | 35.0% | |
| GTATCTGTATTCTGACTGAA+TGG | + | chr7.4:86590611-86590630 | MS.gene97558:CDS | 35.0% | |
| TCAAGACACTTGATTATCAG+AGG | + | chr7.4:86590641-86590660 | MS.gene97558:CDS | 35.0% | |
| TGAACATAGATGCAACTACA+CGG | - | chr7.4:86590306-86590325 | None:intergenic | 35.0% | |
| TGGTGCAAATATTCAACAAG+TGG | + | chr7.4:86590087-86590106 | MS.gene97558:CDS | 35.0% | |
| TTCGCATTCAAGAAAGATAC+CGG | + | chr7.4:86590361-86590380 | MS.gene97558:CDS | 35.0% | |
| ! | AAGCAGCAGATTTGACTTAT+TGG | + | chr7.4:86589663-86589682 | MS.gene97558:CDS | 35.0% |
| ! | AGCAGCAGATTTGACTTATT+GGG | + | chr7.4:86589664-86589683 | MS.gene97558:CDS | 35.0% |
| !! | TTTGTCAGACTTTGAGACAT+CGG | - | chr7.4:86589711-86589730 | None:intergenic | 35.0% |
| !!! | CAGCATTTGTTTTTGATGGA+AGG | + | chr7.4:86590686-86590705 | MS.gene97558:CDS | 35.0% |
| !!! | GATTTTGACTCACAATAGCA+AGG | + | chr7.4:86589784-86589803 | MS.gene97558:CDS | 35.0% |
| AACTGTGAAGAAAGTGAGTG+TGG | + | chr7.4:86590552-86590571 | MS.gene97558:CDS | 40.0% | |
| AATCCGGATCGTGTTCTTAT+TGG | + | chr7.4:86589875-86589894 | MS.gene97558:CDS | 40.0% | |
| ATTCCGGGTTTGATAGAATC+TGG | - | chr7.4:86589820-86589839 | None:intergenic | 40.0% | |
| CAACTACACGGTTCACAAAA+CGG | - | chr7.4:86590294-86590313 | None:intergenic | 40.0% | |
| CAAGGTTCAAGATATCCTTC+TGG | - | chr7.4:86590189-86590208 | None:intergenic | 40.0% | |
| CTCACTTTCTTCACAGTTGT+TGG | - | chr7.4:86590550-86590569 | None:intergenic | 40.0% | |
| GAAGAAAGTGAGTGTGGTTT+GGG | + | chr7.4:86590558-86590577 | MS.gene97558:CDS | 40.0% | |
| GAAGCAACAAAAGATGCACA+TGG | + | chr7.4:86590589-86590608 | MS.gene97558:CDS | 40.0% | |
| TAAGTGTCCATCCATTGAAG+TGG | + | chr7.4:86589433-86589452 | MS.gene97558:CDS | 40.0% | |
| TGAAGAAAGTGAGTGTGGTT+TGG | + | chr7.4:86590557-86590576 | MS.gene97558:CDS | 40.0% | |
| TGGATAGATCTCTCTGGATT+TGG | - | chr7.4:86590480-86590499 | None:intergenic | 40.0% | |
| TGGGTCGAATATGCTTATGT+TGG | - | chr7.4:86590443-86590462 | None:intergenic | 40.0% | |
| TGTTCATGGATAGATCTCTC+TGG | - | chr7.4:86590486-86590505 | None:intergenic | 40.0% | |
| TTCACAGTTGTTGGACTCAT+TGG | - | chr7.4:86590541-86590560 | None:intergenic | 40.0% | |
| TTGGAAAACCATTGGATGCA+TGG | + | chr7.4:86590761-86590780 | MS.gene97558:CDS | 40.0% | |
| ! | AACAGCTTTTAGACCTTCAG+GGG | - | chr7.4:86589912-86589931 | None:intergenic | 40.0% |
| ! | GAACAGCTTTTAGACCTTCA+GGG | - | chr7.4:86589913-86589932 | None:intergenic | 40.0% |
| ! | GTCCCAATCAAACTTGTTCA+TGG | - | chr7.4:86590500-86590519 | None:intergenic | 40.0% |
| ! | TGAACAGCTTTTAGACCTTC+AGG | - | chr7.4:86589914-86589933 | None:intergenic | 40.0% |
| !! | ATGGTGAAGATTTGCTGCAT+TGG | + | chr7.4:86589368-86589387 | MS.gene97558:CDS | 40.0% |
| !! | GAAGAGTGTTTATGCTCACT+GGG | + | chr7.4:86589940-86589959 | MS.gene97558:CDS | 40.0% |
| !! | TGAAGAGTGTTTATGCTCAC+TGG | + | chr7.4:86589939-86589958 | MS.gene97558:CDS | 40.0% |
| AACACCCCGACTAAAACTCA+GGG | + | chr7.4:86589626-86589645 | MS.gene97558:CDS | 45.0% | |
| AAGTTCCTCAACGCTAGTGT+CGG | + | chr7.4:86590145-86590164 | MS.gene97558:CDS | 45.0% | |
| ACAACAGCCACTTCAATGGA+TGG | - | chr7.4:86589443-86589462 | None:intergenic | 45.0% | |
| AGAAAGATACCGGTGACACA+AGG | + | chr7.4:86590371-86590390 | MS.gene97558:CDS | 45.0% | |
| AGAGCAATGACTGCCATTGT+TGG | - | chr7.4:86589413-86589432 | None:intergenic | 45.0% | |
| ATATGTCGGTGGTCCAACAA+TGG | + | chr7.4:86589397-86589416 | MS.gene97558:CDS | 45.0% | |
| ATCGTGTTCTTATTGGAGGC+AGG | + | chr7.4:86589882-86589901 | MS.gene97558:CDS | 45.0% | |
| ATTTGGTCCTCGGTAACTTG+TGG | - | chr7.4:86590463-86590482 | None:intergenic | 45.0% | |
| CAACATCTGTGCTGAAGAAG+AGG | - | chr7.4:86589565-86589584 | None:intergenic | 45.0% | |
| CAGCTTCCAATCTATGAACC+TGG | + | chr7.4:86589503-86589522 | MS.gene97558:CDS | 45.0% | |
| CAGGTTCATAGATTGGAAGC+TGG | - | chr7.4:86589505-86589524 | None:intergenic | 45.0% | |
| CCTCCAATAAGAACACGATC+CGG | - | chr7.4:86589881-86589900 | None:intergenic | 45.0% | |
| CGAAATCCTCTGAGCCAAAA+AGG | - | chr7.4:86590032-86590051 | None:intergenic | 45.0% | |
| CTCAGCAGACCAAAGATTTG+TGG | - | chr7.4:86589987-86590006 | None:intergenic | 45.0% | |
| CTGCCATTGATGTTTGCCAA+GGG | + | chr7.4:86590401-86590420 | MS.gene97558:CDS | 45.0% | |
| GAAAGATACCGGTGACACAA+GGG | + | chr7.4:86590372-86590391 | MS.gene97558:CDS | 45.0% | |
| GATGTTGTAAAGCAATGCCG+TGG | + | chr7.4:86589533-86589552 | MS.gene97558:CDS | 45.0% | |
| GCTGAGAAGTTACGTGAGAT+TGG | + | chr7.4:86590721-86590740 | MS.gene97558:CDS | 45.0% | |
| TAACACCCCGACTAAAACTC+AGG | + | chr7.4:86589625-86589644 | MS.gene97558:CDS | 45.0% | |
| TAGCCCTTGGCAAACATCAA+TGG | - | chr7.4:86590407-86590426 | None:intergenic | 45.0% | |
| TCAAGGCCAGGTTCATAGAT+TGG | - | chr7.4:86589512-86589531 | None:intergenic | 45.0% | |
| TCGTGTTCTTATTGGAGGCA+GGG | + | chr7.4:86589883-86589902 | MS.gene97558:CDS | 45.0% | |
| TGAAGAAGAGGTTCTTGCCA+CGG | - | chr7.4:86589553-86589572 | None:intergenic | 45.0% | |
| TGTGGTTAGTATCTGCTCCT+CGG | - | chr7.4:86589969-86589988 | None:intergenic | 45.0% | |
| TTTACAACATCGTCAAGGCC+AGG | - | chr7.4:86589524-86589543 | None:intergenic | 45.0% | |
| ! | ACACTAGCGTTGAGGAACTT+AGG | - | chr7.4:86590145-86590164 | None:intergenic | 45.0% |
| ! | ATCTCTCTGGATTTGGTCCT+CGG | - | chr7.4:86590473-86590492 | None:intergenic | 45.0% |
| ! | TTTGGTCCTCGGTAACTTGT+GGG | - | chr7.4:86590462-86590481 | None:intergenic | 45.0% |
| !! | AAGACCCTGAGTTTTAGTCG+GGG | - | chr7.4:86589633-86589652 | None:intergenic | 45.0% |
| !! | AAGATTTGCTGCATTGGTGC+TGG | + | chr7.4:86589374-86589393 | MS.gene97558:CDS | 45.0% |
| !! | AGTCAAATCTGCTGCTTTGC+CGG | - | chr7.4:86589660-86589679 | None:intergenic | 45.0% |
| !! | ATTGCCTCAGCAGTTTTGAC+AGG | - | chr7.4:86589758-86589777 | None:intergenic | 45.0% |
| !! | CAAGACCCTGAGTTTTAGTC+GGG | - | chr7.4:86589634-86589653 | None:intergenic | 45.0% |
| !! | CCAAGACCCTGAGTTTTAGT+CGG | - | chr7.4:86589635-86589654 | None:intergenic | 45.0% |
| !! | TGCATTGGTGCTGGATATGT+CGG | + | chr7.4:86589383-86589402 | MS.gene97558:CDS | 45.0% |
| !! | TTGCCTCAGCAGTTTTGACA+GGG | - | chr7.4:86589757-86589776 | None:intergenic | 45.0% |
| AAACCCGGAATTCCTTGCTG+AGG | + | chr7.4:86589829-86589848 | MS.gene97558:CDS | 50.0% | |
| AACCCGGAATTCCTTGCTGA+GGG | + | chr7.4:86589830-86589849 | MS.gene97558:CDS | 50.0% | |
| ACCATTGGATGCATGGCTCA+AGG | + | chr7.4:86590768-86590787 | MS.gene97558:CDS | 50.0% | |
| AGTACTCTGCAACCTCAGGA+AGG | - | chr7.4:86590234-86590253 | None:intergenic | 50.0% | |
| ATTCGACCCACAAGTTACCG+AGG | + | chr7.4:86590453-86590472 | MS.gene97558:CDS | 50.0% | |
| CAAAACCGACACTAGCGTTG+AGG | - | chr7.4:86590153-86590172 | None:intergenic | 50.0% | |
| CAACAAGTGGCCTATGCTGT+CGG | + | chr7.4:86590100-86590119 | MS.gene97558:CDS | 50.0% | |
| CCGACTAAAACTCAGGGTCT+TGG | + | chr7.4:86589632-86589651 | MS.gene97558:CDS | 50.0% | |
| CCGGATCGTGTTCTTATTGG+AGG | + | chr7.4:86589878-86589897 | MS.gene97558:CDS | 50.0% | |
| CCTGCCATTGATGTTTGCCA+AGG | + | chr7.4:86590400-86590419 | MS.gene97558:CDS | 50.0% | |
| CCTTGGCAAACATCAATGGC+AGG | - | chr7.4:86590403-86590422 | None:intergenic | 50.0% | |
| GATGTTTGCCAAGGGCTACT+CGG | + | chr7.4:86590409-86590428 | MS.gene97558:CDS | 50.0% | |
| GTCGACAACAGCCACTTCAA+TGG | - | chr7.4:86589447-86589466 | None:intergenic | 50.0% | |
| GTCTACATCTGCGAGTGCAA+TGG | + | chr7.4:86590208-86590227 | MS.gene97558:CDS | 50.0% | |
| GTGGTTAGTATCTGCTCCTC+GGG | - | chr7.4:86589968-86589987 | None:intergenic | 50.0% | |
| GTTCCCTCAGCAAGGAATTC+CGG | - | chr7.4:86589836-86589855 | None:intergenic | 50.0% | |
| TCCTTGAGCCATGCATCCAA+TGG | - | chr7.4:86590772-86590791 | None:intergenic | 50.0% | |
| TGATTGCAGTTCCCTCAGCA+AGG | - | chr7.4:86589844-86589863 | None:intergenic | 50.0% | |
| TGCAATGTCAGCACTTTGCG+AGG | + | chr7.4:86590060-86590079 | MS.gene97558:CDS | 50.0% | |
| TGCACTCGCAGATGTAGACA+AGG | - | chr7.4:86590207-86590226 | None:intergenic | 50.0% | |
| TGTCCCTGTCAAAACTGCTG+AGG | + | chr7.4:86589751-86589770 | MS.gene97558:CDS | 50.0% | |
| TTCCAGTACTCTGCAACCTC+AGG | - | chr7.4:86590238-86590257 | None:intergenic | 50.0% | |
| TTCCCTCAGCAAGGAATTCC+GGG | - | chr7.4:86589835-86589854 | None:intergenic | 50.0% | |
| TTCCTGAGGTTGCAGAGTAC+TGG | + | chr7.4:86590233-86590252 | MS.gene97558:CDS | 50.0% | |
| ! | AAAACTCAGGGTCTTGGTGC+CGG | + | chr7.4:86589638-86589657 | MS.gene97558:CDS | 50.0% |
| ! | CTCATTGGCTGCAAGTGGAT+TGG | - | chr7.4:86590526-86590545 | None:intergenic | 50.0% |
| ! | TGGTGGATCTTGCTTCCAGA+AGG | + | chr7.4:86590171-86590190 | MS.gene97558:CDS | 50.0% |
| ! | TTGGACTCATTGGCTGCAAG+TGG | - | chr7.4:86590531-86590550 | None:intergenic | 50.0% |
| !! | ATTGGTGCTGGATATGTCGG+TGG | + | chr7.4:86589386-86589405 | MS.gene97558:CDS | 50.0% |
| !! | GCTTGCTGCTAACGCCTTTT+TGG | + | chr7.4:86590015-86590034 | MS.gene97558:CDS | 50.0% |
| !! | TTGGCTGCAAGTGGATTGGA+TGG | - | chr7.4:86590522-86590541 | None:intergenic | 50.0% |
| !!! | AACGCTAGTGTCGGTTTTGG+TGG | + | chr7.4:86590154-86590173 | MS.gene97558:CDS | 50.0% |
| !!! | CTAACGCCTTTTTGGCTCAG+AGG | + | chr7.4:86590023-86590042 | MS.gene97558:CDS | 50.0% |
| !!! | CTCAACGCTAGTGTCGGTTT+TGG | + | chr7.4:86590151-86590170 | MS.gene97558:CDS | 50.0% |
| AGGAGTCTCCCTTGTGTCAC+CGG | - | chr7.4:86590383-86590402 | None:intergenic | 55.0% | |
| CTTTATCGCCGAGTAGCCCT+TGG | - | chr7.4:86590420-86590439 | None:intergenic | 55.0% | |
| GCTCAAGGATATGCCAGCTG+TGG | + | chr7.4:86590783-86590802 | MS.gene97558:CDS | 55.0% | |
| TCAGCACTTTGCGAGGCAAC+TGG | + | chr7.4:86590067-86590086 | MS.gene97558:CDS | 55.0% | |
| TTATGCTCACTGGGTTCCCG+AGG | + | chr7.4:86589949-86589968 | MS.gene97558:CDS | 55.0% | |
| !! | ATGCTGTCGGCACTGACTCA+AGG | + | chr7.4:86590113-86590132 | MS.gene97558:CDS | 55.0% |
| !! | GTCGGCACTGACTCAAGGAT+TGG | + | chr7.4:86590118-86590137 | MS.gene97558:CDS | 55.0% |
| !! | TGAGTCAGTGCCGACAGCAT+AGG | - | chr7.4:86590113-86590132 | None:intergenic | 55.0% |
| CGAGTGCAATGGCCTTCCTG+AGG | + | chr7.4:86590219-86590238 | MS.gene97558:CDS | 60.0% | |
| CGCTGTTCCAGGCTGCAATG+CGG | - | chr7.4:86589481-86589500 | None:intergenic | 60.0% | |
| CTAAACCCCGCATTGCAGCC+TGG | + | chr7.4:86589471-86589490 | MS.gene97558:CDS | 60.0% | |
| CTGTTCCAGGCTGCAATGCG+GGG | - | chr7.4:86589479-86589498 | None:intergenic | 60.0% | |
| GCTGTTCCAGGCTGCAATGC+GGG | - | chr7.4:86589480-86589499 | None:intergenic | 60.0% | |
| TGGAAGCTGGTCGCTGTTCC+AGG | - | chr7.4:86589492-86589511 | None:intergenic | 60.0% | |
| GGAGGCAGGGAAACCCCTGA+AGG | + | chr7.4:86589896-86589915 | MS.gene97558:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 86589368 | 86590810 | 86589368 | ID=MS.gene97558 |
| chr7.4 | mRNA | 86589368 | 86590810 | 86589368 | ID=MS.gene97558.t1;Parent=MS.gene97558 |
| chr7.4 | exon | 86589368 | 86590810 | 86589368 | ID=MS.gene97558.t1.exon1;Parent=MS.gene97558.t1 |
| chr7.4 | CDS | 86589368 | 86590810 | 86589368 | ID=cds.MS.gene97558.t1;Parent=MS.gene97558.t1 |
| Gene Sequence |
| Protein sequence |
