AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050083


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050083.t1 MTR_5g064500 98.124 533 9 1 1 533 1 532 0.0 1094
MS.gene050083.t1 MTR_5g064500 97.753 445 9 1 1 445 1 444 0.0 909
MS.gene050083.t1 MTR_2g009080 76.981 530 98 4 1 530 1 506 0.0 844
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050083.t1 AT1G22410 87.689 463 54 1 63 525 63 522 0.0 864
MS.gene050083.t1 AT4G39980 77.083 528 112 2 1 525 1 522 0.0 853
MS.gene050083.t1 AT4G33510 77.203 522 95 4 3 524 1 498 0.0 842
MS.gene050083.t1 AT4G33510 72.527 364 76 4 3 366 1 340 0.0 551

Find 161 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTTGTTCTCATTAT+TGG 0.134462 5.4:-50314000 None:intergenic
GATTGAACCGGGTTTGGTTT+TGG 0.181209 5.4:-50311844 None:intergenic
GAGACCACATGGAGCCTTTA+TGG 0.184574 5.4:-50314536 None:intergenic
ATAATATTCGTGATACTTTC+AGG 0.200922 5.4:+50312192 MS.gene050083:CDS
CCATTTGGTGGATGCATTGC+GGG 0.212646 5.4:-50311949 None:intergenic
TAATGAGAACAACTGATTTC+TGG 0.220444 5.4:+50314004 MS.gene050083:CDS
TCTTCCTGATTCGGGTATTC+AGG 0.267996 5.4:-50312011 None:intergenic
TGATTGTGCTGAGAGCTTTA+AGG 0.274674 5.4:+50312157 MS.gene050083:CDS
TGGTCAAATGCCGGTTATTA+AGG 0.287437 5.4:+50312250 MS.gene050083:CDS
TAGAACTTTGGAGGAGCATT+TGG 0.303044 5.4:+50312094 MS.gene050083:CDS
GACGGTGGTTGGTTGAGGTT+TGG 0.308857 5.4:-50311925 None:intergenic
GTGGGTTTGGTTTGTTTGGT+TGG 0.312074 5.4:-50311791 None:intergenic
TCCTCAAAATTATCTGATCT+TGG 0.314286 5.4:-50312644 None:intergenic
ATGAGTTTAACAAGCTCATT+TGG 0.319944 5.4:-50314358 None:intergenic
CCAGCTGTCAATGGTCCATT+TGG 0.323106 5.4:-50311964 None:intergenic
AGGAAGTTGAAGAGCCTTCT+TGG 0.327085 5.4:-50311991 None:intergenic
ACTGCTCGGCCCATATGATT+TGG 0.332701 5.4:+50314103 MS.gene050083:CDS
CTTGGATTTCCAGCTGTCAA+TGG 0.335989 5.4:-50311973 None:intergenic
GTTGGTTGAGGTTTGGTGGT+GGG 0.339855 5.4:-50311918 None:intergenic
TTCCCACCGATTGTGTTTGC+TGG 0.344055 5.4:+50312065 MS.gene050083:CDS
TGAAGCTTCCACATCTAATC+AGG 0.349284 5.4:+50314455 MS.gene050083:CDS
ATGAGTGTTGTTATGATGTT+TGG 0.350568 5.4:+50312227 MS.gene050083:CDS
GTTTGGTTGGAGTAATGATT+TGG 0.352344 5.4:-50311778 None:intergenic
ACTAGGTTGGATTCAACTTC+TGG 0.353531 5.4:+50314069 MS.gene050083:CDS
TGACGAGGCCCTTGGATTCA+TGG 0.361274 5.4:+50313951 MS.gene050083:CDS
ATGGGGAATGAAGGTGGGTT+TGG 0.362499 5.4:-50311804 None:intergenic
GGCGAGGATTGAACCGGGTT+TGG 0.365889 5.4:-50311850 None:intergenic
GAAGGTGGGTTTGGTTTGTT+TGG 0.373405 5.4:-50311795 None:intergenic
GATTCAAGGTCTTCCTGATT+CGG 0.382092 5.4:-50312020 None:intergenic
ATCTCGAGATGAACTCCTCC+TGG 0.383136 5.4:-50315495 None:intergenic
CTTGGATTCATGGCTGCTGC+TGG 0.388264 5.4:+50313961 MS.gene050083:CDS
CTCGCCCCTTCGATGCCATC+AGG 0.398912 5.4:+50314563 MS.gene050083:CDS
TGCTGGCTCGGCGGCGTGGA+CGG 0.401136 5.4:-50311871 None:intergenic
ATTCAAGGTCTTCCTGATTC+GGG 0.401205 5.4:-50312019 None:intergenic
CTGCTCGGCCCATATGATTT+GGG 0.405345 5.4:+50314104 MS.gene050083:CDS
TGCTGGTGAAGCTAGAACTT+TGG 0.406539 5.4:+50312082 MS.gene050083:CDS
TGCTAATCCCTTGGGAATCA+AGG 0.411682 5.4:+50314182 MS.gene050083:CDS
TTTCACCGACCCAAATCATA+TGG 0.414155 5.4:-50314113 None:intergenic
ACTTCCTGAATACCCGAATC+AGG 0.417101 5.4:+50312007 MS.gene050083:CDS
CAGCCTCCTCTTGAATCTAC+TGG 0.419266 5.4:+50315684 MS.gene050083:CDS
CCTCTGAGGATCCGGTGTCC+TGG 0.425550 5.4:-50312735 None:intergenic
GAATGGGAGCTGAAAATATG+AGG 0.428665 5.4:+50314431 MS.gene050083:CDS
GGGCATGGGTTTGAGCCCGA+TGG 0.431240 5.4:-50311823 None:intergenic
AGAACTTTGGAGGAGCATTT+GGG 0.432167 5.4:+50312095 MS.gene050083:CDS
GGCATGGGTTTGAGCCCGAT+GGG 0.435648 5.4:-50311822 None:intergenic
GGAAACGCGTTTCTTCTTCA+AGG 0.435848 5.4:+50312131 MS.gene050083:CDS
GAAAGGACCCGGCAGCTAGA+TGG 0.442378 5.4:+50314132 MS.gene050083:CDS
CGAATCATCCTCTGAGGATC+CGG 0.446078 5.4:-50312743 None:intergenic
GCATTTGGGTGAAGCTGCTA+TGG 0.448723 5.4:+50312109 MS.gene050083:CDS
GTGTAGGTGGGGAGAATGGC+GGG 0.452534 5.4:+50312608 MS.gene050083:intron
GTGGACGGCGAGGATTGAAC+CGG 0.454085 5.4:-50311856 None:intergenic
TATGCATGGAAACACCATAA+AGG 0.458987 5.4:+50314522 MS.gene050083:CDS
GGTTGGTTGAGGTTTGGTGG+TGG 0.462949 5.4:-50311919 None:intergenic
GTGATCACAGTTATTCTCCC+TGG 0.464414 5.4:-50314406 None:intergenic
AATAACTGTGATCACTAGAA+TGG 0.468302 5.4:+50314414 MS.gene050083:CDS
AAGAGGAGTTGCTAATCCCT+TGG 0.471432 5.4:+50314173 MS.gene050083:CDS
GTGTCTTCAGAACCGATTCA+AGG 0.475152 5.4:-50312034 None:intergenic
AACCGAGTTGACGAGGCCCT+TGG 0.475450 5.4:+50313943 MS.gene050083:CDS
GAGGGTTACTCAATGGAACT+TGG 0.475465 5.4:+50312838 MS.gene050083:CDS
CATGGGCACCATCTAGCTGC+CGG 0.479264 5.4:-50314140 None:intergenic
CCCGCAATGCATCCACCAAA+TGG 0.485320 5.4:+50311949 MS.gene050083:CDS
ACCCACCTTCATTCCCCATC+GGG 0.485451 5.4:+50311808 MS.gene050083:CDS
ATCAGGGCAGTGCGTAGAGC+AGG 0.486709 5.4:+50314472 MS.gene050083:CDS
AGTGTTGTTATGATGTTTGG+TGG 0.495904 5.4:+50312230 MS.gene050083:CDS
GGTGGTTGGTTGAGGTTTGG+TGG 0.498933 5.4:-50311922 None:intergenic
GTATGTGTAGGTGGGGAGAA+TGG 0.499019 5.4:+50312604 MS.gene050083:intron
ATGTTATCCCCTCTGTAACT+AGG 0.500156 5.4:-50312686 None:intergenic
CTAGTCAGTGATTGTTCGTA+TGG 0.504178 5.4:-50314051 None:intergenic
AGAGGAGTTGCTAATCCCTT+GGG 0.505158 5.4:+50314174 MS.gene050083:CDS
ATAACTGTGATCACTAGAAT+GGG 0.510424 5.4:+50314415 MS.gene050083:CDS
TGGTGAAGCTAGAACTTTGG+AGG 0.510903 5.4:+50312085 MS.gene050083:CDS
GCTGTCAATGGTCCATTTGG+TGG 0.510953 5.4:-50311961 None:intergenic
TCCATTTGGTGGATGCATTG+CGG 0.511516 5.4:-50311950 None:intergenic
AACAAAGTGAGCAAGGAGAT+AGG 0.513379 5.4:+50312870 MS.gene050083:CDS
CAGCAGCAGCCATGAATCCA+AGG 0.514701 5.4:-50313960 None:intergenic
TTGAGCCCGATGGGGAATGA+AGG 0.515160 5.4:-50311813 None:intergenic
GCTTCACCAGCAAACACAAT+CGG 0.517024 5.4:-50312071 None:intergenic
CATTTGGTGGATGCATTGCG+GGG 0.520482 5.4:-50311948 None:intergenic
ATATGATTTGGGTCGGTGAA+AGG 0.524061 5.4:+50314115 MS.gene050083:CDS
AGCCCGATGGGGAATGAAGG+TGG 0.524170 5.4:-50311810 None:intergenic
CTATGCAGAGGGTTACTCAA+TGG 0.527213 5.4:+50312831 MS.gene050083:CDS
CGAACAATCACTGACTAGGT+TGG 0.528366 5.4:+50314056 MS.gene050083:CDS
ATGCATTTGATGAGAAATCC+AGG 0.533532 5.4:+50312717 MS.gene050083:CDS
CAGTTGTTCTCATTATTGGA+TGG 0.535636 5.4:-50313996 None:intergenic
GGTTGGAGTAATGATTTGGA+GGG 0.537013 5.4:-50311774 None:intergenic
GATTGTGAAGCATTAAGTCT+AGG 0.540354 5.4:-50315606 None:intergenic
ACATACCCTGATGGCATCGA+AGG 0.544063 5.4:-50314569 None:intergenic
ATGGGCACCATCTAGCTGCC+GGG 0.546243 5.4:-50314139 None:intergenic
CCCATGCCCAAAACCAAACC+CGG 0.547092 5.4:+50311837 MS.gene050083:CDS
TGGTTGGAGTAATGATTTGG+AGG 0.552825 5.4:-50311775 None:intergenic
GATGTTTGGTGGTCAAATGC+CGG 0.554132 5.4:+50312241 MS.gene050083:CDS
GGAGTTCATCTCGAGATGAC+AGG 0.554494 5.4:+50315501 MS.gene050083:CDS
AACCCACCTTCATTCCCCAT+CGG 0.554852 5.4:+50311807 MS.gene050083:CDS
TGGTCTCTACTATGACTGCT+CGG 0.558656 5.4:+50314089 MS.gene050083:CDS
CTTTGACCCACCAATGCACT+CGG 0.560562 5.4:-50315535 None:intergenic
CCAAATGGACCATTGACAGC+TGG 0.562154 5.4:+50311964 MS.gene050083:CDS
TGTGTAGGTGGGGAGAATGG+CGG 0.564279 5.4:+50312607 MS.gene050083:intron
ATCCAAGGGCCTCGTCAACT+CGG 0.564332 5.4:-50313945 None:intergenic
TTGCTTTCATCATTGCTGAA+AGG 0.565069 5.4:+50315637 MS.gene050083:CDS
GCCCATGTGGAATTTCTAAG+AGG 0.566044 5.4:+50314156 MS.gene050083:CDS
TTGGCAGGTAAGTGACAAGA+TGG 0.566076 5.4:+50314333 MS.gene050083:intron
GTGAAGCTTCCTAGTTACAG+AGG 0.567289 5.4:+50312677 MS.gene050083:CDS
TTTATGGTGTTTCCATGCAT+AGG 0.567351 5.4:-50314520 None:intergenic
TTTGATGTTCACGAACAAGA+AGG 0.569277 5.4:+50315465 MS.gene050083:CDS
CTCCTCTTAGAAATTCCACA+TGG 0.569920 5.4:-50314158 None:intergenic
CATACGAACAATCACTGACT+AGG 0.572547 5.4:+50314052 MS.gene050083:CDS
GTCTAGGATCGCAGTGTGTG+TGG 0.573843 5.4:-50315590 None:intergenic
TTCACCGACCCAAATCATAT+GGG 0.576952 5.4:-50314112 None:intergenic
CGCACTGCCCTGATTAGATG+TGG 0.581273 5.4:-50314463 None:intergenic
GAACAAGAAGGAAGCCACCC+AGG 0.583974 5.4:+50315477 MS.gene050083:CDS
TGATTTGGAGGGAATGAGAG+AGG 0.585499 5.4:-50311763 None:intergenic
TTCACTGAACAAAGTGAGCA+AGG 0.586199 5.4:+50312863 MS.gene050083:CDS
GAATCAGGAAGACCTTGAAT+CGG 0.587258 5.4:+50312022 MS.gene050083:CDS
TTTGGGTCGGTGAAAGGACC+CGG 0.587829 5.4:+50314121 MS.gene050083:CDS
GTGGTTATGCTGCTATGCAG+AGG 0.589556 5.4:+50312819 MS.gene050083:CDS
CATTTGGGTGAAGCTGCTAT+GGG 0.590193 5.4:+50312110 MS.gene050083:CDS
GTACAAACCTTGATTCCCAA+GGG 0.590839 5.4:-50314189 None:intergenic
TTGAATCCTCAAAACAAACC+AGG 0.591600 5.4:+50314388 MS.gene050083:CDS
TTTGGAGGGAATGAGAGAGG+TGG 0.594242 5.4:-50311760 None:intergenic
GCCCGATGGGGAATGAAGGT+GGG 0.597597 5.4:-50311809 None:intergenic
TCTCGAGATGAACTCCTCCT+GGG 0.600054 5.4:-50315494 None:intergenic
AGCAGCAGCCATGAATCCAA+GGG 0.602803 5.4:-50313959 None:intergenic
AATGTGACCGAGTGCATTGG+TGG 0.602808 5.4:+50315528 MS.gene050083:CDS
TGTACAAACCTTGATTCCCA+AGG 0.603751 5.4:-50314190 None:intergenic
CATACCCTGATGGCATCGAA+GGG 0.606030 5.4:-50314568 None:intergenic
TGGGTCAGCGATCCTATGCA+TGG 0.606343 5.4:+50314508 MS.gene050083:CDS
TGAAGCTTCCTAGTTACAGA+GGG 0.612272 5.4:+50312678 MS.gene050083:CDS
CACCAGCAAACACAATCGGT+GGG 0.618762 5.4:-50312067 None:intergenic
TCACCAGCAAACACAATCGG+TGG 0.619065 5.4:-50312068 None:intergenic
GAGCAGGACAAATTGTCACA+TGG 0.619461 5.4:+50314488 MS.gene050083:CDS
TGGTTATGCTGCTATGCAGA+GGG 0.620511 5.4:+50312820 MS.gene050083:CDS
TGACAGCTGGAAATCCAAGA+AGG 0.620877 5.4:+50311977 MS.gene050083:CDS
GCTCGGCGGCGTGGACGGCG+AGG 0.621822 5.4:-50311866 None:intergenic
CAAAATCCAGTAGATTCAAG+AGG 0.624319 5.4:-50315690 None:intergenic
TCGGCCCATATGATTTGGGT+CGG 0.625917 5.4:+50314108 MS.gene050083:CDS
CAAAATGTGACCGAGTGCAT+TGG 0.625971 5.4:+50315525 MS.gene050083:CDS
TGAATCCTCAAAACAAACCA+GGG 0.631348 5.4:+50314389 MS.gene050083:CDS
ATGAGAATTACATACCCTGA+TGG 0.631649 5.4:-50314578 None:intergenic
AGCAGGACAAATTGTCACAT+GGG 0.633535 5.4:+50314489 MS.gene050083:CDS
AATCCAGTAGATTCAAGAGG+AGG 0.634268 5.4:-50315687 None:intergenic
GCAGCTAGATGGTGCCCATG+TGG 0.634651 5.4:+50314143 MS.gene050083:CDS
TGGACGGCGAGGATTGAACC+GGG 0.636196 5.4:-50311855 None:intergenic
AACGCGTTTCTTCTTCAAGG+TGG 0.636605 5.4:+50312134 MS.gene050083:CDS
GCTTGCTAACCGAGTTGACG+AGG 0.637217 5.4:+50313936 MS.gene050083:CDS
TCGCCCCTTCGATGCCATCA+GGG 0.638610 5.4:+50314564 MS.gene050083:CDS
AATGGGAGCTGAAAATATGA+GGG 0.641776 5.4:+50314432 MS.gene050083:CDS
GCATGGGTTTGAGCCCGATG+GGG 0.643491 5.4:-50311821 None:intergenic
GAAGCTTCCACATCTAATCA+GGG 0.649089 5.4:+50314456 MS.gene050083:CDS
CGAGATGAACTCCTCCTGGG+TGG 0.649169 5.4:-50315491 None:intergenic
ATTTGGTGGATGCATTGCGG+GGG 0.649793 5.4:-50311947 None:intergenic
CCAGGACACCGGATCCTCAG+AGG 0.650897 5.4:+50312735 MS.gene050083:CDS
TGATGAGAAATCCAGGACAC+CGG 0.656139 5.4:+50312724 MS.gene050083:CDS
TACAGAGGGGATAACATCAA+CGG 0.665031 5.4:+50312692 MS.gene050083:CDS
CAAGAAGGAAGCCACCCAGG+AGG 0.672096 5.4:+50315480 MS.gene050083:CDS
TCCTCTTAGAAATTCCACAT+GGG 0.686989 5.4:-50314157 None:intergenic
ATACCCTGATGGCATCGAAG+GGG 0.693071 5.4:-50314567 None:intergenic
CAACTCGGTTAGCAAGCTCA+CGG 0.698471 5.4:-50313930 None:intergenic
TAAGCACGAATCATCCTCTG+AGG 0.708055 5.4:-50312749 None:intergenic
ATGTGACCGAGTGCATTGGT+GGG 0.709519 5.4:+50315529 MS.gene050083:CDS
AACACCATAAAGGCTCCATG+TGG 0.710721 5.4:+50314532 MS.gene050083:CDS
GAAGCTTCCTAGTTACAGAG+GGG 0.779581 5.4:+50312679 MS.gene050083:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAGATTAAAAATA+AGG + chr5.4:50313561-50313580 MS.gene050083:intron 10.0%
!! AAGATAATAATTTAAAAAAG+AGG + chr5.4:50313601-50313620 MS.gene050083:intron 10.0%
!! TTCTACTTAAAATTAAAATA+AGG + chr5.4:50314762-50314781 MS.gene050083:intron 10.0%
!!! TATATATAAAATTTTGAGTT+TGG + chr5.4:50314886-50314905 MS.gene050083:intron 10.0%
!!! TTCTTAATTTTTTTTTTTCA+AGG + chr5.4:50312919-50312938 MS.gene050083:intron 10.0%
!!! TTTTTTAAGTGAATTTTTTT+TGG + chr5.4:50313330-50313349 MS.gene050083:intron 10.0%
!! AAATCACAAAAATCAAATAT+TGG - chr5.4:50315378-50315397 None:intergenic 15.0%
!! AATAAAAATTCACACTAATA+TGG - chr5.4:50315306-50315325 None:intergenic 15.0%
!! AATCACAAAAATCAAATATT+GGG - chr5.4:50315377-50315396 None:intergenic 15.0%
!! ATAAACTAAAAAATATACCA+AGG - chr5.4:50312975-50312994 None:intergenic 15.0%
!! TAAATATGTTATTATGATTC+TGG + chr5.4:50312366-50312385 MS.gene050083:intron 15.0%
!!! CTATGTAAATATTTATCTTT+TGG + chr5.4:50313527-50313546 MS.gene050083:intron 15.0%
!!! TATATTATTTTGTTATGCAT+TGG + chr5.4:50314314-50314333 MS.gene050083:intron 15.0%
!!! TTGATTTTAAATCAAAAAGT+AGG - chr5.4:50314656-50314675 None:intergenic 15.0%
!!! TTGGTATATTTTTTAGTTTA+TGG + chr5.4:50312974-50312993 MS.gene050083:intron 15.0%
!! AAAACATTGAAAAAGATTAG+TGG + chr5.4:50314786-50314805 MS.gene050083:intron 20.0%
!! AAACATTGAAAAAGATTAGT+GGG + chr5.4:50314787-50314806 MS.gene050083:intron 20.0%
!! CTCAAAAAAAAATTGTAGAA+TGG + chr5.4:50313290-50313309 MS.gene050083:intron 20.0%
!! TTAAAGAATAGTTAATCTCA+TGG + chr5.4:50313693-50313712 MS.gene050083:intron 20.0%
!!! ATTTATCTTTTGGTTTTCAA+TGG + chr5.4:50313537-50313556 MS.gene050083:intron 20.0%
!!! GAAATCATTTTTGTATTCTT+TGG + chr5.4:50314963-50314982 MS.gene050083:intron 20.0%
!!! GATTCTTGAATTTTTGTTTA+TGG + chr5.4:50313180-50313199 MS.gene050083:intron 20.0%
!!! GGATATATAAATGTGAATTT+TGG + chr5.4:50313876-50313895 MS.gene050083:intron 20.0%
!!! TCTTTATTTTGTTTCTAACA+TGG + chr5.4:50313835-50313854 MS.gene050083:intron 20.0%
!!! TGCTAAATTGTAATTCTTTT+GGG + chr5.4:50315256-50315275 MS.gene050083:intron 20.0%
!!! TGTGATTCTTATTTGTTATA+TGG + chr5.4:50312946-50312965 MS.gene050083:intron 20.0%
! AAATCAGTTGTTCTCATTAT+TGG - chr5.4:50314003-50314022 None:intergenic 25.0%
! AACATTGAAAAAGATTAGTG+GGG + chr5.4:50314788-50314807 MS.gene050083:intron 25.0%
! AATGTCATTATTGACCAATT+GGG + chr5.4:50314994-50315013 MS.gene050083:intron 25.0%
! AATTTAACAGAAGAGACTAA+AGG - chr5.4:50315165-50315184 None:intergenic 25.0%
! AGTATATTCTCAACAAAAGT+GGG - chr5.4:50313268-50313287 None:intergenic 25.0%
! ATAATATTCGTGATACTTTC+AGG + chr5.4:50312192-50312211 MS.gene050083:CDS 25.0%
! ATTTAACAGAAGAGACTAAA+GGG - chr5.4:50315164-50315183 None:intergenic 25.0%
! GACAAGTTTCGTATATTTAA+TGG - chr5.4:50315142-50315161 None:intergenic 25.0%
! GACATAATTCAAAGTCTAAA+AGG - chr5.4:50313131-50313150 None:intergenic 25.0%
! TATATATAAGCCTTGAAGTT+TGG - chr5.4:50314874-50314893 None:intergenic 25.0%
! TGATGATTGATATAACAAGT+GGG + chr5.4:50313380-50313399 MS.gene050083:intron 25.0%
! TGGTAAATTAAACGTATTCT+TGG + chr5.4:50313896-50313915 MS.gene050083:intron 25.0%
! TGTCTAAGAATTATGTCTAA+AGG + chr5.4:50313147-50313166 MS.gene050083:intron 25.0%
! TTAAGAAAAAGACAAAGTGA+AGG - chr5.4:50312906-50312925 None:intergenic 25.0%
! TTATAATCGCTTATAAGTTG+AGG + chr5.4:50314243-50314262 MS.gene050083:intron 25.0%
! TTCACCTAAAATTGTCAATA+TGG + chr5.4:50315233-50315252 MS.gene050083:intron 25.0%
! TTGGGATTAAAGTTATAAAG+TGG - chr5.4:50315359-50315378 None:intergenic 25.0%
!! CTGGAAAGAATCAATTTTAT+CGG + chr5.4:50312385-50312404 MS.gene050083:intron 25.0%
!! GAAGTTTTTACCTTAATAAC+CGG - chr5.4:50312263-50312282 None:intergenic 25.0%
!! GTGCTAAATTGTAATTCTTT+TGG + chr5.4:50315255-50315274 MS.gene050083:intron 25.0%
!!! AAATTGTAATTCTTTTGGGT+AGG + chr5.4:50315260-50315279 MS.gene050083:intron 25.0%
!!! AGTCTTGTATTTGTTGTTAT+GGG + chr5.4:50313013-50313032 MS.gene050083:intron 25.0%
!!! AGTGGAACAATTTCATTTTT+TGG - chr5.4:50314692-50314711 None:intergenic 25.0%
!!! ATAAAATTTTGAGTTTGGAG+TGG + chr5.4:50314891-50314910 MS.gene050083:intron 25.0%
!!! TAGTCTTGTATTTGTTGTTA+TGG + chr5.4:50313012-50313031 MS.gene050083:intron 25.0%
!!! TATTTGTTATATGGTTTCCT+TGG + chr5.4:50312955-50312974 MS.gene050083:intron 25.0%
!!! TCAACTCTTTCTTTTTTAGT+TGG + chr5.4:50314600-50314619 MS.gene050083:intron 25.0%
AAATGAAATTGTTCCACTTG+TGG + chr5.4:50314694-50314713 MS.gene050083:intron 30.0%
AATAACTGTGATCACTAGAA+TGG + chr5.4:50314414-50314433 MS.gene050083:CDS 30.0%
AATTAAACGTATTCTTGGCA+TGG + chr5.4:50313901-50313920 MS.gene050083:intron 30.0%
ACAAAAGTCAGTGACATTAT+TGG - chr5.4:50315407-50315426 None:intergenic 30.0%
AGAAACAAAATAAAGAGCTG+TGG - chr5.4:50313831-50313850 None:intergenic 30.0%
AGTCAACATCATTATTTGAG+GGG - chr5.4:50313445-50313464 None:intergenic 30.0%
AGTCTCTTCTGTTAAATTGA+GGG + chr5.4:50315167-50315186 MS.gene050083:intron 30.0%
ATAACTGTGATCACTAGAAT+GGG + chr5.4:50314415-50314434 MS.gene050083:CDS 30.0%
ATGAGTTTAACAAGCTCATT+TGG - chr5.4:50314361-50314380 None:intergenic 30.0%
CAATCTAAGTCTTTATCCAA+CGG + chr5.4:50313781-50313800 MS.gene050083:intron 30.0%
CAGTCAACATCATTATTTGA+GGG - chr5.4:50313446-50313465 None:intergenic 30.0%
GAAAAGACAAAAACATGTCT+TGG - chr5.4:50313213-50313232 None:intergenic 30.0%
GAATGTCATTATTGACCAAT+TGG + chr5.4:50314993-50315012 MS.gene050083:intron 30.0%
GAGTATATTCTCAACAAAAG+TGG - chr5.4:50313269-50313288 None:intergenic 30.0%
GATGATTGATATAACAAGTG+GGG + chr5.4:50313381-50313400 MS.gene050083:intron 30.0%
GTGATGATTGATATAACAAG+TGG + chr5.4:50313379-50313398 MS.gene050083:intron 30.0%
GTTTCACTGAATTAATACAC+AGG + chr5.4:50315425-50315444 MS.gene050083:intron 30.0%
GTTTCATTCATGATTGACAA+AGG + chr5.4:50313352-50313371 MS.gene050083:intron 30.0%
TAGTCTCTTCTGTTAAATTG+AGG + chr5.4:50315166-50315185 MS.gene050083:intron 30.0%
TCCTCAAAATTATCTGATCT+TGG - chr5.4:50312647-50312666 None:intergenic 30.0%
TGAAGATGAAAATGTGAAAG+TGG + chr5.4:50312576-50312595 MS.gene050083:intron 30.0%
TGATGTCTCTTTCTATAAGT+TGG - chr5.4:50315334-50315353 None:intergenic 30.0%
TGGTCTAGTTATGTTAATGT+TGG + chr5.4:50313855-50313874 MS.gene050083:intron 30.0%
! AGCACCATATTGACAATTTT+AGG - chr5.4:50315240-50315259 None:intergenic 30.0%
! ATGAGTGTTGTTATGATGTT+TGG + chr5.4:50312227-50312246 MS.gene050083:CDS 30.0%
! ATGTTTAATGTGGTTGGTAT+TGG + chr5.4:50313408-50313427 MS.gene050083:intron 30.0%
! GAAAGAATCAATTTTATCGG+TGG + chr5.4:50312388-50312407 MS.gene050083:intron 30.0%
! GTGTAGTTGATGTTAATATG+AGG + chr5.4:50313662-50313681 MS.gene050083:intron 30.0%
! TAATGAGAACAACTGATTTC+TGG + chr5.4:50314004-50314023 MS.gene050083:CDS 30.0%
! TGTTTAATGTGGTTGGTATT+GGG + chr5.4:50313409-50313428 MS.gene050083:intron 30.0%
!! AAAGTGGATTTTGTATGTGT+AGG + chr5.4:50312592-50312611 MS.gene050083:intron 30.0%
!! GATAATTTTGAGGAGAAGAA+TGG + chr5.4:50312653-50312672 MS.gene050083:CDS 30.0%
!! TTATTTTGTTATGCATTGGC+AGG + chr5.4:50314318-50314337 MS.gene050083:intron 30.0%
AATGGGAGCTGAAAATATGA+GGG + chr5.4:50314432-50314451 MS.gene050083:CDS 35.0%
ACTAGATTATGAGCTCATCA+CGG - chr5.4:50312527-50312546 None:intergenic 35.0%
ACTATTTCACCTACTACAAG+TGG - chr5.4:50314932-50314951 None:intergenic 35.0%
AGGATTGGAAAAACTCACTT+TGG + chr5.4:50315049-50315068 MS.gene050083:intron 35.0%
ATCACGGTCAGTAAAAATCT+CGG - chr5.4:50312511-50312530 None:intergenic 35.0%
ATGAGAATTACATACCCTGA+TGG - chr5.4:50314581-50314600 None:intergenic 35.0%
ATGCATTTGATGAGAAATCC+AGG + chr5.4:50312717-50312736 MS.gene050083:CDS 35.0%
ATTGAAAAAGATTAGTGGGG+AGG + chr5.4:50314791-50314810 MS.gene050083:intron 35.0%
CAAAATCCAGTAGATTCAAG+AGG - chr5.4:50315693-50315712 None:intergenic 35.0%
CAATCCTCAGACATAGTTAA+GGG - chr5.4:50315036-50315055 None:intergenic 35.0%
CAGTTGTTCTCATTATTGGA+TGG - chr5.4:50313999-50314018 None:intergenic 35.0%
CGTTGGATAAAGACTTAGAT+TGG - chr5.4:50313783-50313802 None:intergenic 35.0%
CTAACTTCAATCCTTTGCAA+TGG + chr5.4:50313721-50313740 MS.gene050083:intron 35.0%
GCAGTCAACATCATTATTTG+AGG - chr5.4:50313447-50313466 None:intergenic 35.0%
GGGCATCTCTACAAAAATTT+GGG - chr5.4:50315199-50315218 None:intergenic 35.0%
GTTTGGTTGGAGTAATGATT+TGG - chr5.4:50311781-50311800 None:intergenic 35.0%
TAGGTGGGATTAGACTTTAA+GGG + chr5.4:50315279-50315298 MS.gene050083:intron 35.0%
TATGCATGGAAACACCATAA+AGG + chr5.4:50314522-50314541 MS.gene050083:CDS 35.0%
TATTCGCATAACATCGACAT+TGG - chr5.4:50312467-50312486 None:intergenic 35.0%
TCAACTATGTTAGACCCAAT+TGG - chr5.4:50315011-50315030 None:intergenic 35.0%
TCCTCTTAGAAATTCCACAT+GGG - chr5.4:50314160-50314179 None:intergenic 35.0%
TGAATCCTCAAAACAAACCA+GGG + chr5.4:50314389-50314408 MS.gene050083:CDS 35.0%
TTGAATCCTCAAAACAAACC+AGG + chr5.4:50314388-50314407 MS.gene050083:CDS 35.0%
TTGCTTTCATCATTGCTGAA+AGG + chr5.4:50315637-50315656 MS.gene050083:CDS 35.0%
TTTATGGTGTTTCCATGCAT+AGG - chr5.4:50314523-50314542 None:intergenic 35.0%
TTTGACTAATGTATGTGAGC+TGG + chr5.4:50314831-50314850 MS.gene050083:intron 35.0%
TTTGATGTTCACGAACAAGA+AGG + chr5.4:50315465-50315484 MS.gene050083:CDS 35.0%
! AGGGCATCTCTACAAAAATT+TGG - chr5.4:50315200-50315219 None:intergenic 35.0%
! AGTGTTGTTATGATGTTTGG+TGG + chr5.4:50312230-50312249 MS.gene050083:CDS 35.0%
! ATCAATTTTATCGGTGGAGA+TGG + chr5.4:50312394-50312413 MS.gene050083:intron 35.0%
! GATTGTGAAGCATTAAGTCT+AGG - chr5.4:50315609-50315628 None:intergenic 35.0%
! GCCAAGATCAGATAATTTTG+AGG + chr5.4:50312643-50312662 MS.gene050083:CDS 35.0%
! TGGATTTTGTATGTGTAGGT+GGG + chr5.4:50312596-50312615 MS.gene050083:intron 35.0%
!! ATGGTAAGGATTTGACTTGT+TGG + chr5.4:50312413-50312432 MS.gene050083:intron 35.0%
!! TGTAATTCTTTTGGGTAGGT+GGG + chr5.4:50315264-50315283 MS.gene050083:intron 35.0%
!! TTGTAATTCTTTTGGGTAGG+TGG + chr5.4:50315263-50315282 MS.gene050083:intron 35.0%
!!! AATTTTGAGTTTGGAGTGGT+AGG + chr5.4:50314895-50314914 MS.gene050083:intron 35.0%
AACAAAGTGAGCAAGGAGAT+AGG + chr5.4:50312870-50312889 MS.gene050083:CDS 40.0%
AATCCAGTAGATTCAAGAGG+AGG - chr5.4:50315690-50315709 None:intergenic 40.0%
AGCAGGACAAATTGTCACAT+GGG + chr5.4:50314489-50314508 MS.gene050083:CDS 40.0%
ATGTTATCCCCTCTGTAACT+AGG - chr5.4:50312689-50312708 None:intergenic 40.0%
ATTCAAGGTCTTCCTGATTC+GGG - chr5.4:50312022-50312041 None:intergenic 40.0%
CAAAGATTGTGAACCACAAG+TGG - chr5.4:50314710-50314729 None:intergenic 40.0%
CCAATCCTCAGACATAGTTA+AGG - chr5.4:50315037-50315056 None:intergenic 40.0%
CCTTAACTATGTCTGAGGAT+TGG + chr5.4:50315034-50315053 MS.gene050083:intron 40.0%
CTAGTCAGTGATTGTTCGTA+TGG - chr5.4:50314054-50314073 None:intergenic 40.0%
CTCCTCTTAGAAATTCCACA+TGG - chr5.4:50314161-50314180 None:intergenic 40.0%
GAAGCTTCCACATCTAATCA+GGG + chr5.4:50314456-50314475 MS.gene050083:CDS 40.0%
GAATCAGGAAGACCTTGAAT+CGG + chr5.4:50312022-50312041 MS.gene050083:CDS 40.0%
GAATCCCTTAACTATGTCTG+AGG + chr5.4:50315029-50315048 MS.gene050083:intron 40.0%
GAATGGGAGCTGAAAATATG+AGG + chr5.4:50314431-50314450 MS.gene050083:CDS 40.0%
GATTCAAGGTCTTCCTGATT+CGG - chr5.4:50312023-50312042 None:intergenic 40.0%
GGATGCATGTTTAATGTGGT+TGG + chr5.4:50313402-50313421 MS.gene050083:intron 40.0%
GTACAAACCTTGATTCCCAA+GGG - chr5.4:50314192-50314211 None:intergenic 40.0%
GTAGGTGGGATTAGACTTTA+AGG + chr5.4:50315278-50315297 MS.gene050083:intron 40.0%
TACAGAGGGGATAACATCAA+CGG + chr5.4:50312692-50312711 MS.gene050083:CDS 40.0%
TCACGGTCAGTAAAAATCTC+GGG - chr5.4:50312510-50312529 None:intergenic 40.0%
TGAAGCTTCCACATCTAATC+AGG + chr5.4:50314455-50314474 MS.gene050083:CDS 40.0%
TGAAGCTTCCTAGTTACAGA+GGG + chr5.4:50312678-50312697 MS.gene050083:CDS 40.0%
TGATTGTGCTGAGAGCTTTA+AGG + chr5.4:50312157-50312176 MS.gene050083:CDS 40.0%
TGTACAAACCTTGATTCCCA+AGG - chr5.4:50314193-50314212 None:intergenic 40.0%
TTCACCGACCCAAATCATAT+GGG - chr5.4:50314115-50314134 None:intergenic 40.0%
TTCACTGAACAAAGTGAGCA+AGG + chr5.4:50312863-50312882 MS.gene050083:CDS 40.0%
TTCAGAGATGAATCATACCG+AGG - chr5.4:50315086-50315105 None:intergenic 40.0%
TTTCACCGACCCAAATCATA+TGG - chr5.4:50314116-50314135 None:intergenic 40.0%
! ACTAGGTTGGATTCAACTTC+TGG + chr5.4:50314069-50314088 MS.gene050083:CDS 40.0%
! ATATGATTTGGGTCGGTGAA+AGG + chr5.4:50314115-50314134 MS.gene050083:CDS 40.0%
! CATACGAACAATCACTGACT+AGG + chr5.4:50314052-50314071 MS.gene050083:CDS 40.0%
! GGATTTTGTATGTGTAGGTG+GGG + chr5.4:50312597-50312616 MS.gene050083:intron 40.0%
! GGTTGGAGTAATGATTTGGA+GGG - chr5.4:50311777-50311796 None:intergenic 40.0%
! GTGGATTTTGTATGTGTAGG+TGG + chr5.4:50312595-50312614 MS.gene050083:intron 40.0%
! TAATGTGGTTGGTATTGGGT+TGG + chr5.4:50313413-50313432 MS.gene050083:intron 40.0%
! TGGTCAAATGCCGGTTATTA+AGG + chr5.4:50312250-50312269 MS.gene050083:CDS 40.0%
! TGGTTGGAGTAATGATTTGG+AGG - chr5.4:50311778-50311797 None:intergenic 40.0%
! TTTTATCGGTGGAGATGGTA+AGG + chr5.4:50312399-50312418 MS.gene050083:intron 40.0%
!! ACCTTTGAGACACTCTCAAA+AGG - chr5.4:50313241-50313260 None:intergenic 40.0%
!! AGAACTTTGGAGGAGCATTT+GGG + chr5.4:50312095-50312114 MS.gene050083:CDS 40.0%
!! GTAAGGATTTGACTTGTTGG+TGG + chr5.4:50312416-50312435 MS.gene050083:intron 40.0%
!! TAGAACTTTGGAGGAGCATT+TGG + chr5.4:50312094-50312113 MS.gene050083:CDS 40.0%
!!! ATTCTCCCTGGTTTGTTTTG+AGG - chr5.4:50314397-50314416 None:intergenic 40.0%
!!! ATTGAACCGGGTTTGGTTTT+GGG - chr5.4:50311846-50311865 None:intergenic 40.0%
AAACGTATTCTTGGCATGGC+AGG + chr5.4:50313905-50313924 MS.gene050083:intron 45.0%
AACACCATAAAGGCTCCATG+TGG + chr5.4:50314532-50314551 MS.gene050083:CDS 45.0%
AACGCGTTTCTTCTTCAAGG+TGG + chr5.4:50312134-50312153 MS.gene050083:CDS 45.0%
AAGAGGAGTTGCTAATCCCT+TGG + chr5.4:50314173-50314192 MS.gene050083:CDS 45.0%
ACTTCCTGAATACCCGAATC+AGG + chr5.4:50312007-50312026 MS.gene050083:CDS 45.0%
AGAGGAGTTGCTAATCCCTT+GGG + chr5.4:50314174-50314193 MS.gene050083:CDS 45.0%
AGGAAGTTGAAGAGCCTTCT+TGG - chr5.4:50311994-50312013 None:intergenic 45.0%
AGGTGAACAGCGAATCATCA+AGG - chr5.4:50315220-50315239 None:intergenic 45.0%
CAAAATGTGACCGAGTGCAT+TGG + chr5.4:50315525-50315544 MS.gene050083:CDS 45.0%
CACGGTCAGTAAAAATCTCG+GGG - chr5.4:50312509-50312528 None:intergenic 45.0%
CATTTGGGTGAAGCTGCTAT+GGG + chr5.4:50312110-50312129 MS.gene050083:CDS 45.0%
CTATGCAGAGGGTTACTCAA+TGG + chr5.4:50312831-50312850 MS.gene050083:CDS 45.0%
CTTGGATTTCCAGCTGTCAA+TGG - chr5.4:50311976-50311995 None:intergenic 45.0%
GAAGCTTCCTAGTTACAGAG+GGG + chr5.4:50312679-50312698 MS.gene050083:CDS 45.0%
GAGCAGGACAAATTGTCACA+TGG + chr5.4:50314488-50314507 MS.gene050083:CDS 45.0%
GAGGGTTACTCAATGGAACT+TGG + chr5.4:50312838-50312857 MS.gene050083:CDS 45.0%
GCCCATGTGGAATTTCTAAG+AGG + chr5.4:50314156-50314175 MS.gene050083:CDS 45.0%
GCTTCACCAGCAAACACAAT+CGG - chr5.4:50312074-50312093 None:intergenic 45.0%
GGAAACGCGTTTCTTCTTCA+AGG + chr5.4:50312131-50312150 MS.gene050083:CDS 45.0%
GGTGAACAGCGAATCATCAA+GGG - chr5.4:50315219-50315238 None:intergenic 45.0%
GTGAAGCTTCCTAGTTACAG+AGG + chr5.4:50312677-50312696 MS.gene050083:CDS 45.0%
GTGATCACAGTTATTCTCCC+TGG - chr5.4:50314409-50314428 None:intergenic 45.0%
GTGGGGATGCATGTTTAATG+TGG + chr5.4:50313398-50313417 MS.gene050083:intron 45.0%
TAAGCACGAATCATCCTCTG+AGG - chr5.4:50312752-50312771 None:intergenic 45.0%
TGACAGCTGGAAATCCAAGA+AGG + chr5.4:50311977-50311996 MS.gene050083:CDS 45.0%
TGATGAGAAATCCAGGACAC+CGG + chr5.4:50312724-50312743 MS.gene050083:CDS 45.0%
TGCTAATCCCTTGGGAATCA+AGG + chr5.4:50314182-50314201 MS.gene050083:CDS 45.0%
TGCTGGTGAAGCTAGAACTT+TGG + chr5.4:50312082-50312101 MS.gene050083:CDS 45.0%
TGGTCTCTACTATGACTGCT+CGG + chr5.4:50314089-50314108 MS.gene050083:CDS 45.0%
TGGTGAAGCTAGAACTTTGG+AGG + chr5.4:50312085-50312104 MS.gene050083:CDS 45.0%
TGGTTATGCTGCTATGCAGA+GGG + chr5.4:50312820-50312839 MS.gene050083:CDS 45.0%
TTGGCAGGTAAGTGACAAGA+TGG + chr5.4:50314333-50314352 MS.gene050083:intron 45.0%
! CGAACAATCACTGACTAGGT+TGG + chr5.4:50314056-50314075 MS.gene050083:CDS 45.0%
! CTTCTCAGAGCTTTTGCTAC+TGG + chr5.4:50312797-50312816 MS.gene050083:CDS 45.0%
! GATGTTTGGTGGTCAAATGC+CGG + chr5.4:50312241-50312260 MS.gene050083:CDS 45.0%
! GTGTCTTCAGAACCGATTCA+AGG - chr5.4:50312037-50312056 None:intergenic 45.0%
! TCCATTTGGTGGATGCATTG+CGG - chr5.4:50311953-50311972 None:intergenic 45.0%
! TGATTTGGAGGGAATGAGAG+AGG - chr5.4:50311766-50311785 None:intergenic 45.0%
! TTTGAGTTTGGAGTGGTAGG+TGG + chr5.4:50314898-50314917 MS.gene050083:intron 45.0%
!! GAAGGTGGGTTTGGTTTGTT+TGG - chr5.4:50311798-50311817 None:intergenic 45.0%
!! GATTGAACCGGGTTTGGTTT+TGG - chr5.4:50311847-50311866 None:intergenic 45.0%
!! GTGGGTTTGGTTTGTTTGGT+TGG - chr5.4:50311794-50311813 None:intergenic 45.0%
!! TCTTCCTGATTCGGGTATTC+AGG - chr5.4:50312014-50312033 None:intergenic 45.0%
!! TTGGTGGATTTGAATCTGCG+AGG + chr5.4:50312432-50312451 MS.gene050083:intron 45.0%
!!! GCCTTTTGAGAGTGTCTCAA+AGG + chr5.4:50313237-50313256 MS.gene050083:intron 45.0%
AACAGCTGCAGCCATTGCAA+AGG - chr5.4:50313735-50313754 None:intergenic 50.0%
AACCCACCTTCATTCCCCAT+CGG + chr5.4:50311807-50311826 MS.gene050083:CDS 50.0%
AATGTGACCGAGTGCATTGG+TGG + chr5.4:50315528-50315547 MS.gene050083:CDS 50.0%
ACTGCTCGGCCCATATGATT+TGG + chr5.4:50314103-50314122 MS.gene050083:CDS 50.0%
AGCAGCAGCCATGAATCCAA+GGG - chr5.4:50313962-50313981 None:intergenic 50.0%
ATCTCGAGATGAACTCCTCC+TGG - chr5.4:50315498-50315517 None:intergenic 50.0%
CAACTCGGTTAGCAAGCTCA+CGG - chr5.4:50313933-50313952 None:intergenic 50.0%
CACCAGCAAACACAATCGGT+GGG - chr5.4:50312070-50312089 None:intergenic 50.0%
CAGCCTCCTCTTGAATCTAC+TGG + chr5.4:50315684-50315703 MS.gene050083:CDS 50.0%
CCAAATGGACCATTGACAGC+TGG + chr5.4:50311964-50311983 MS.gene050083:CDS 50.0%
CCAGCTGTCAATGGTCCATT+TGG - chr5.4:50311967-50311986 None:intergenic 50.0%
CTGCTCGGCCCATATGATTT+GGG + chr5.4:50314104-50314123 MS.gene050083:CDS 50.0%
CTTTGACCCACCAATGCACT+CGG - chr5.4:50315538-50315557 None:intergenic 50.0%
CTTTGGCAATCTTTGCGCCT+CGG + chr5.4:50315066-50315085 MS.gene050083:intron 50.0%
GAGACACTCTCAAAAGGCTG+TGG - chr5.4:50313235-50313254 None:intergenic 50.0%
GAGACCACATGGAGCCTTTA+TGG - chr5.4:50314539-50314558 None:intergenic 50.0%
GCAAAAGGGCCACTTGTAGT+AGG + chr5.4:50314920-50314939 MS.gene050083:intron 50.0%
GCATTTGGGTGAAGCTGCTA+TGG + chr5.4:50312109-50312128 MS.gene050083:CDS 50.0%
GCTGTCAATGGTCCATTTGG+TGG - chr5.4:50311964-50311983 None:intergenic 50.0%
GGAGTTCATCTCGAGATGAC+AGG + chr5.4:50315501-50315520 MS.gene050083:CDS 50.0%
GTATGTGAGCTGGTCCATGA+TGG + chr5.4:50314841-50314860 MS.gene050083:intron 50.0%
GTATGTGTAGGTGGGGAGAA+TGG + chr5.4:50312604-50312623 MS.gene050083:intron 50.0%
GTGGTTATGCTGCTATGCAG+AGG + chr5.4:50312819-50312838 MS.gene050083:CDS 50.0%
TCACCAGCAAACACAATCGG+TGG - chr5.4:50312071-50312090 None:intergenic 50.0%
TCTCGAGATGAACTCCTCCT+GGG - chr5.4:50315497-50315516 None:intergenic 50.0%
TGGAGTGGTAGGTGGCAAAA+GGG + chr5.4:50314906-50314925 MS.gene050083:intron 50.0%
TTGGAGTGGTAGGTGGCAAA+AGG + chr5.4:50314905-50314924 MS.gene050083:intron 50.0%
TTTGCAATGGCTGCAGCTGT+TGG + chr5.4:50313734-50313753 MS.gene050083:intron 50.0%
TTTGGAGGGAATGAGAGAGG+TGG - chr5.4:50311763-50311782 None:intergenic 50.0%
! ACATACCCTGATGGCATCGA+AGG - chr5.4:50314572-50314591 None:intergenic 50.0%
! AGTTTGGTAGCCCACCATCA+TGG - chr5.4:50314858-50314877 None:intergenic 50.0%
! ATACCCTGATGGCATCGAAG+GGG - chr5.4:50314570-50314589 None:intergenic 50.0%
! ATGGGGAATGAAGGTGGGTT+TGG - chr5.4:50311807-50311826 None:intergenic 50.0%
! ATGTGACCGAGTGCATTGGT+GGG + chr5.4:50315529-50315548 MS.gene050083:CDS 50.0%
! ATTTGGTGGATGCATTGCGG+GGG - chr5.4:50311950-50311969 None:intergenic 50.0%
! CATACCCTGATGGCATCGAA+GGG - chr5.4:50314571-50314590 None:intergenic 50.0%
! CATTTGGTGGATGCATTGCG+GGG - chr5.4:50311951-50311970 None:intergenic 50.0%
! CCATTTGGTGGATGCATTGC+GGG - chr5.4:50311952-50311971 None:intergenic 50.0%
! CGAATCATCCTCTGAGGATC+CGG - chr5.4:50312746-50312765 None:intergenic 50.0%
! CTCAGAGCTTTTGCTACTGG+TGG + chr5.4:50312800-50312819 MS.gene050083:CDS 50.0%
! TCGGCCCATATGATTTGGGT+CGG + chr5.4:50314108-50314127 MS.gene050083:CDS 50.0%
! TTCCCACCGATTGTGTTTGC+TGG + chr5.4:50312065-50312084 MS.gene050083:CDS 50.0%
!! GTTGGTTGAGGTTTGGTGGT+GGG - chr5.4:50311921-50311940 None:intergenic 50.0%
!! TGGTGGGCTACCAAACTTCA+AGG + chr5.4:50314861-50314880 MS.gene050083:intron 50.0%
!!! AGGTTTGGTGGTGGGCTTTT+CGG - chr5.4:50311913-50311932 None:intergenic 50.0%
!!! GTGATGACCGGGTTTTTTGC+TGG - chr5.4:50311891-50311910 None:intergenic 50.0%
ACCCACCTTCATTCCCCATC+GGG + chr5.4:50311808-50311827 MS.gene050083:CDS 55.0%
ATCCAAGGGCCTCGTCAACT+CGG - chr5.4:50313948-50313967 None:intergenic 55.0%
CAGCAGCAGCCATGAATCCA+AGG - chr5.4:50313963-50313982 None:intergenic 55.0%
CCCATGCCCAAAACCAAACC+CGG + chr5.4:50311837-50311856 MS.gene050083:CDS 55.0%
CCCGCAATGCATCCACCAAA+TGG + chr5.4:50311949-50311968 MS.gene050083:CDS 55.0%
CGCACTGCCCTGATTAGATG+TGG - chr5.4:50314466-50314485 None:intergenic 55.0%
CTTGGATTCATGGCTGCTGC+TGG + chr5.4:50313961-50313980 MS.gene050083:CDS 55.0%
GAACAAGAAGGAAGCCACCC+AGG + chr5.4:50315477-50315496 MS.gene050083:CDS 55.0%
GTGAGCTGGTCCATGATGGT+GGG + chr5.4:50314845-50314864 MS.gene050083:intron 55.0%
GTTAACAGCTGCAGAGCCGT+TGG - chr5.4:50313800-50313819 None:intergenic 55.0%
TGACGAGGCCCTTGGATTCA+TGG + chr5.4:50313951-50313970 MS.gene050083:CDS 55.0%
TGGGTCAGCGATCCTATGCA+TGG + chr5.4:50314508-50314527 MS.gene050083:CDS 55.0%
TGTGAGCTGGTCCATGATGG+TGG + chr5.4:50314844-50314863 MS.gene050083:intron 55.0%
TGTGTAGGTGGGGAGAATGG+CGG + chr5.4:50312607-50312626 MS.gene050083:intron 55.0%
TTGAGCCCGATGGGGAATGA+AGG - chr5.4:50311816-50311835 None:intergenic 55.0%
TTTGGGTCGGTGAAAGGACC+CGG + chr5.4:50314121-50314140 MS.gene050083:CDS 55.0%
! GACGGTGGTTGGTTGAGGTT+TGG - chr5.4:50311928-50311947 None:intergenic 55.0%
! GCTTGCTAACCGAGTTGACG+AGG + chr5.4:50313936-50313955 MS.gene050083:CDS 55.0%
! GGTGGTTGGTTGAGGTTTGG+TGG - chr5.4:50311925-50311944 None:intergenic 55.0%
! GTCTAGGATCGCAGTGTGTG+TGG - chr5.4:50315593-50315612 None:intergenic 55.0%
! GTGGGCTTTTCGGTGATGAC+CGG - chr5.4:50311903-50311922 None:intergenic 55.0%
! TGGGCTTTTCGGTGATGACC+GGG - chr5.4:50311902-50311921 None:intergenic 55.0%
!! GGTTGGTTGAGGTTTGGTGG+TGG - chr5.4:50311922-50311941 None:intergenic 55.0%
!!! ACCGGGTTTGGTTTTGGGCA+TGG - chr5.4:50311841-50311860 None:intergenic 55.0%
!!! CCGGGTTTGGTTTTGGGCAT+GGG - chr5.4:50311840-50311859 None:intergenic 55.0%
!!! GACCGGGTTTTTTGCTGGCT+CGG - chr5.4:50311886-50311905 None:intergenic 55.0%
!!! GGGCGAGTTTTGAGACCACA+TGG - chr5.4:50314550-50314569 None:intergenic 55.0%
AGCCCGATGGGGAATGAAGG+TGG - chr5.4:50311813-50311832 None:intergenic 60.0%
ATCAGGGCAGTGCGTAGAGC+AGG + chr5.4:50314472-50314491 MS.gene050083:CDS 60.0%
ATGGGCACCATCTAGCTGCC+GGG - chr5.4:50314142-50314161 None:intergenic 60.0%
CAAGAAGGAAGCCACCCAGG+AGG + chr5.4:50315480-50315499 MS.gene050083:CDS 60.0%
CATGGGCACCATCTAGCTGC+CGG - chr5.4:50314143-50314162 None:intergenic 60.0%
CGAGATGAACTCCTCCTGGG+TGG - chr5.4:50315494-50315513 None:intergenic 60.0%
CGCCGAGCCAGCAAAAAACC+CGG + chr5.4:50311881-50311900 MS.gene050083:CDS 60.0%
GAAAGGACCCGGCAGCTAGA+TGG + chr5.4:50314132-50314151 MS.gene050083:CDS 60.0%
GCAGCTAGATGGTGCCCATG+TGG + chr5.4:50314143-50314162 MS.gene050083:CDS 60.0%
GCATGGGTTTGAGCCCGATG+GGG - chr5.4:50311824-50311843 None:intergenic 60.0%
GCCCGATGGGGAATGAAGGT+GGG - chr5.4:50311812-50311831 None:intergenic 60.0%
GGCATGGGTTTGAGCCCGAT+GGG - chr5.4:50311825-50311844 None:intergenic 60.0%
GGCGAGGATTGAACCGGGTT+TGG - chr5.4:50311853-50311872 None:intergenic 60.0%
GTGGACGGCGAGGATTGAAC+CGG - chr5.4:50311859-50311878 None:intergenic 60.0%
GTGTAGGTGGGGAGAATGGC+GGG + chr5.4:50312608-50312627 MS.gene050083:intron 60.0%
TCGCCCCTTCGATGCCATCA+GGG + chr5.4:50314564-50314583 MS.gene050083:CDS 60.0%
TGGACGGCGAGGATTGAACC+GGG - chr5.4:50311858-50311877 None:intergenic 60.0%
! AACCGAGTTGACGAGGCCCT+TGG + chr5.4:50313943-50313962 MS.gene050083:CDS 60.0%
!!! CGGGTTTTTTGCTGGCTCGG+CGG - chr5.4:50311883-50311902 None:intergenic 60.0%
CCAGGACACCGGATCCTCAG+AGG + chr5.4:50312735-50312754 MS.gene050083:CDS 65.0%
CTCGCCCCTTCGATGCCATC+AGG + chr5.4:50314563-50314582 MS.gene050083:CDS 65.0%
GGGCATGGGTTTGAGCCCGA+TGG - chr5.4:50311826-50311845 None:intergenic 65.0%
GGTGGATGCATTGCGGGGGA+CGG - chr5.4:50311946-50311965 None:intergenic 65.0%
! CCTCTGAGGATCCGGTGTCC+TGG - chr5.4:50312738-50312757 None:intergenic 65.0%
!!! TTTTTGCTGGCTCGGCGGCG+TGG - chr5.4:50311878-50311897 None:intergenic 65.0%
GCATTGCGGGGGACGGTGGT+TGG - chr5.4:50311939-50311958 None:intergenic 70.0%
GGATGCATTGCGGGGGACGG+TGG - chr5.4:50311943-50311962 None:intergenic 70.0%
! CGGGGGACGGTGGTTGGTTG+AGG - chr5.4:50311933-50311952 None:intergenic 70.0%
!! TGCTGGCTCGGCGGCGTGGA+CGG - chr5.4:50311874-50311893 None:intergenic 75.0%
! GCTCGGCGGCGTGGACGGCG+AGG - chr5.4:50311869-50311888 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 50311738 50315713 50311738 ID=MS.gene050083
chr5.4 mRNA 50311738 50315713 50311738 ID=MS.gene050083.t1;Parent=MS.gene050083
chr5.4 exon 50311738 50312271 50311738 ID=MS.gene050083.t1.exon1;Parent=MS.gene050083.t1
chr5.4 CDS 50311738 50312271 50311738 ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1
chr5.4 exon 50312614 50312891 50312614 ID=MS.gene050083.t1.exon2;Parent=MS.gene050083.t1
chr5.4 CDS 50312614 50312891 50312614 ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1
chr5.4 exon 50313927 50314203 50313927 ID=MS.gene050083.t1.exon3;Parent=MS.gene050083.t1
chr5.4 CDS 50313927 50314203 50313927 ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1
chr5.4 exon 50314340 50314585 50314340 ID=MS.gene050083.t1.exon4;Parent=MS.gene050083.t1
chr5.4 CDS 50314340 50314585 50314340 ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1
chr5.4 exon 50315447 50315713 50315447 ID=MS.gene050083.t1.exon5;Parent=MS.gene050083.t1
chr5.4 CDS 50315447 50315713 50315447 ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1
Gene Sequence

>MS.gene050083

ATGTCTCTCTCTTCAACATCTTCCACCTCTCTCATTCCCTCCAAATCATTACTCCAACCAAACAAACCAAACCCACCTTCATTCCCCATCGGGCTCAAACCCATGCCCAAAACCAAACCCGGTTCAATCCTCGCCGTCCACGCCGCCGAGCCAGCAAAAAACCCGGTCATCACCGAAAAGCCCACCACCAAACCTCAACCAACCACCGTCCCCCGCAATGCATCCACCAAATGGACCATTGACAGCTGGAAATCCAAGAAGGCTCTTCAACTTCCTGAATACCCGAATCAGGAAGACCTTGAATCGGTTCTGAAGACACTCGATGCTTTCCCACCGATTGTGTTTGCTGGTGAAGCTAGAACTTTGGAGGAGCATTTGGGTGAAGCTGCTATGGGAAACGCGTTTCTTCTTCAAGGTGGTGATTGTGCTGAGAGCTTTAAGGAGTTTAATGCTAATAATATTCGTGATACTTTCAGGATTATTCTTCAGATGAGTGTTGTTATGATGTTTGGTGGTCAAATGCCGGTTATTAAGGTAAAAACTTCAAATTCTGTTATTTCTTTTTTTTAAATTATGTATTATAATCAATCATATGATTTGACTTTAGATGTGTTGTTATTATTGAAGTTAAATATGTTATTATGATTCTGGAAAGAATCAATTTTATCGGTGGAGATGGTAAGGATTTGACTTGTTGGTGGATTTGAATCTGCGAGGATTCAAATTCCAATGTCGATGTTATGCGAATATGTAATAAACTTTAGTAAACCCCGAGATTTTTACTGACCGTGATGAGCTCATAATCTAGTTTTGTGTAAAAAAAGATTCAATTTTTGTGTGAAGATGAAAATGTGAAAGTGGATTTTGTATGTGTAGGTGGGGAGAATGGCGGGTCAATTTGCGAAGCCAAGATCAGATAATTTTGAGGAGAAGAATGGTGTGAAGCTTCCTAGTTACAGAGGGGATAACATCAACGGTGATGCATTTGATGAGAAATCCAGGACACCGGATCCTCAGAGGATGATTCGTGCTTATTGTCAAGCTGCAGCTACTCTGAATCTTCTCAGAGCTTTTGCTACTGGTGGTTATGCTGCTATGCAGAGGGTTACTCAATGGAACTTGGATTTCACTGAACAAAGTGAGCAAGGAGATAGGTATATTGTAACCTTCACTTTGTCTTTTTCTTAATTTTTTTTTTTCAAGGAATTTGTGATTCTTATTTGTTATATGGTTTCCTTGGTATATTTTTTAGTTTATGGTTTTGTTATTCAAATTAGTCTTGTATTTGTTGTTATGGGTTTGATTTGTGAAGATTTTACTGCTTTCAATTATTGATAAATTGACTATTGAAATTATAATACATGACATATTATAAAGATATTTTATTTTACCTTTTAGACTTTGAATTATGTCTAAGAATTATGTCTAAAGGAGATTAATCTGATTCTTGAATTTTTGTTTATGGCAAAAAGCCAAGACATGTTTTTGTCTTTTCCACAGCCTTTTGAGAGTGTCTCAAAGGTATCACCCACTTTTGTTGAGAATATACTCGCTCAAAAAAAAATTGTAGAATGGAAGAAAATTGATTTTATTTTTTTAAGTGAATTTTTTTTGGTTTCATTCATGATTGACAAAGGTATAGTGATGATTGATATAACAAGTGGGGATGCATGTTTAATGTGGTTGGTATTGGGTTGGTATTTTCCCCTCAAATAATGATGTTGACTGCTCACTGTGTTCAATTTCATGTATAATGATGTTGATACTTATGATGATAATTGATAGTTATCTATGTAAATATTTATCTTTTGGTTTTCAATGGTAAAATGAAAGATTAAAAATAAGGATAAAAAAATGTGAAAAAAGATAATAATTTAAAAAAGAGGATTCTTAAAAATTCAGAATGATTGATTCAATAAGCTTTGTGTAGTTGATGTTAATATGAGGTTTAAACATTAAAGAATAGTTAATCTCATGGAAGTGCTAACTTCAATCCTTTGCAATGGCTGCAGCTGTTGGATTGAGATCTAGATTCAATTGTGCCAATCTAAGTCTTTATCCAACGGCTCTGCAGCTGTTAACTTGTGCAGCCACAGCTCTTTATTTTGTTTCTAACATGGTCTAGTTATGTTAATGTTGGATATATAAATGTGAATTTTGGTAAATTAAACGTATTCTTGGCATGGCAGGTACCGTGAGCTTGCTAACCGAGTTGACGAGGCCCTTGGATTCATGGCTGCTGCTGGTCTCACAGTTGACCATCCAATAATGAGAACAACTGATTTCTGGACTTCACATGAATGCTTGTTATTGCCATACGAACAATCACTGACTAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGCTCGGCCCATATGATTTGGGTCGGTGAAAGGACCCGGCAGCTAGATGGTGCCCATGTGGAATTTCTAAGAGGAGTTGCTAATCCCTTGGGAATCAAGGTTTGTACATTATTCTTATCATGCGACTTCAATTTCGTTTTATAATCGCTTATAAGTTGAGGTACTAAATATTATTAAGCAAGTAAATTGAATCACGTAGCATAATCTCTTATATTATTTTGTTATGCATTGGCAGGTAAGTGACAAGATGGATCCAAATGAGCTTGTTAAACTCATTGAGATCTTGAATCCTCAAAACAAACCAGGGAGAATAACTGTGATCACTAGAATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTAATCAGGGCAGTGCGTAGAGCAGGACAAATTGTCACATGGGTCAGCGATCCTATGCATGGAAACACCATAAAGGCTCCATGTGGTCTCAAAACTCGCCCCTTCGATGCCATCAGGGTATGTAATTCTCATCAACTCTTTCTTTTTTAGTTGGTGACATGTTGCTTTCGAGTATCTTTAATATCCTACTTTTTGATTTAAAATCAAATTTTATTTATCACCAAAAAATGAAATTGTTCCACTTGTGGTTCACAATCTTTGCTAGAAATAAATATCATGCGTACTATTAAAAGTTCTACTTAAAATTAAAATAAGGAAAAACATTGAAAAAGATTAGTGGGGAGGAAGTAAATCTTGCTTAATTTGACTAATGTATGTGAGCTGGTCCATGATGGTGGGCTACCAAACTTCAAGGCTTATATATAAAATTTTGAGTTTGGAGTGGTAGGTGGCAAAAGGGCCACTTGTAGTAGGTGAAATAGTTAAGTATGCAAGAAATCATTTTTGTATTCTTTGGTGTTTACGAATGTCATTATTGACCAATTGGGTCTAACATAGTTGAATCCCTTAACTATGTCTGAGGATTGGAAAAACTCACTTTGGCAATCTTTGCGCCTCGGTATGATTCATCTCTGAATTTCGAGTGAACTCACAATTTCGAATAAGTATTCCATTAAATATACGAAACTTGTCCCTTTAGTCTCTTCTGTTAAATTGAGGGTATATTCCCAAATTTTTGTAGAGATGCCCTTGATGATTCGCTGTTCACCTAAAATTGTCAATATGGTGCTAAATTGTAATTCTTTTGGGTAGGTGGGATTAGACTTTAAGGGACCATATTAGTGTGAATTTTTATTCTTTTCCAACTTATAGAAAGAGACATCATACCACTTTATAACTTTAATCCCAATATTTGATTTTTGTGATTTTGATTACCAATAATGTCACTGACTTTTGTTTCACTGAATTAATACACAGGCTGAAGTGAGAGCATTCTTTGATGTTCACGAACAAGAAGGAAGCCACCCAGGAGGAGTTCATCTCGAGATGACAGGTCAAAATGTGACCGAGTGCATTGGTGGGTCAAAGATAGTCACATTTGACGATCTTAGCTCACGCTACCACACACACTGCGATCCTAGACTTAATGCTTCACAATCTCTCGAGCTTGCTTTCATCATTGCTGAAAGGCTAAGAAAGAGTAGAATCAGATCACAGCCTCCTCTTGAATCTACTGGATTTTGA

Protein sequence

>MS.gene050083.t1

MSLSSTSSTSLIPSKSLLQPNKPNPPSFPIGLKPMPKTKPGSILAVHAAEPAKNPVITEKPTTKPQPTTVPRNASTKWTIDSWKSKKALQLPEYPNQEDLESVLKTLDAFPPIVFAGEARTLEEHLGEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDNFEEKNGVKLPSYRGDNINGDAFDEKSRTPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTEQSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMRTTDFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSKIVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRIRSQPPLESTGF