Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050083.t1 | XP_003615152.1 | 98.1 | 533 | 9 | 1 | 1 | 533 | 1 | 532 | 8.60E-305 | 1055.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050083.t1 | P27608 | 82.2 | 540 | 78 | 5 | 1 | 525 | 1 | 537 | 1.3e-256 | 886.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050083.t1 | G7KAF6 | 98.1 | 533 | 9 | 1 | 1 | 533 | 1 | 532 | 6.2e-305 | 1055.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050083 | MS.gene050809 | 0.837262 | 5.77E-57 | -1.69E-46 |
MS.gene050083 | MS.gene054290 | 0.811125 | 8.19E-51 | -1.69E-46 |
MS.gene050083 | MS.gene058323 | -0.800711 | 1.27E-48 | -1.69E-46 |
MS.gene050083 | MS.gene058603 | 0.80144 | 9.00E-49 | -1.69E-46 |
MS.gene050083 | MS.gene06223 | -0.807893 | 4.05E-50 | -1.69E-46 |
MS.gene050083 | MS.gene062941 | -0.823212 | 1.56E-53 | -1.69E-46 |
MS.gene050083 | MS.gene062942 | -0.800046 | 1.73E-48 | -1.69E-46 |
MS.gene050083 | MS.gene072609 | 0.829604 | 4.69E-55 | -1.69E-46 |
MS.gene050083 | MS.gene073806 | -0.80105 | 1.08E-48 | -1.69E-46 |
MS.gene050083 | MS.gene07438 | -0.805579 | 1.25E-49 | -1.69E-46 |
MS.gene050083 | MS.gene08732 | 0.827111 | 1.87E-54 | -1.69E-46 |
MS.gene050083 | MS.gene24570 | -0.802451 | 5.57E-49 | -1.69E-46 |
MS.gene050083 | MS.gene27061 | -0.80034 | 1.51E-48 | -1.69E-46 |
MS.gene050083 | MS.gene28267 | -0.807935 | 3.96E-50 | -1.69E-46 |
MS.gene050083 | MS.gene36594 | -0.800173 | 1.63E-48 | -1.69E-46 |
MS.gene050083 | MS.gene36703 | -0.80086 | 1.18E-48 | -1.69E-46 |
MS.gene050083 | MS.gene37079 | -0.807202 | 5.67E-50 | -1.69E-46 |
MS.gene050083 | MS.gene38586 | -0.802911 | 4.48E-49 | -1.69E-46 |
MS.gene050083 | MS.gene50725 | -0.800138 | 1.66E-48 | -1.69E-46 |
MS.gene050083 | MS.gene51118 | 0.807506 | 4.89E-50 | -1.69E-46 |
MS.gene050083 | MS.gene52149 | -0.803792 | 2.94E-49 | -1.69E-46 |
MS.gene050083 | MS.gene56599 | -0.805662 | 1.20E-49 | -1.69E-46 |
MS.gene050083 | MS.gene56844 | 0.809915 | 1.49E-50 | -1.69E-46 |
MS.gene050083 | MS.gene58120 | -0.800056 | 1.72E-48 | -1.69E-46 |
MS.gene050083 | MS.gene58153 | -0.811634 | 6.35E-51 | -1.69E-46 |
MS.gene050083 | MS.gene64070 | 0.985024 | 2.69E-162 | -1.69E-46 |
MS.gene050083 | MS.gene64372 | 0.81052 | 1.11E-50 | -1.69E-46 |
MS.gene050083 | MS.gene66460 | -0.800563 | 1.36E-48 | -1.69E-46 |
MS.gene050083 | MS.gene66627 | -0.80144 | 9.00E-49 | -1.69E-46 |
MS.gene050083 | MS.gene70297 | -0.811529 | 6.69E-51 | -1.69E-46 |
MS.gene050083 | MS.gene76628 | -0.807066 | 6.06E-50 | -1.69E-46 |
MS.gene050083 | MS.gene77842 | 0.81711 | 3.91E-52 | -1.69E-46 |
MS.gene050083 | MS.gene79304 | -0.800303 | 1.54E-48 | -1.69E-46 |
MS.gene050083 | MS.gene85478 | -0.805185 | 1.51E-49 | -1.69E-46 |
MS.gene050083 | MS.gene89332 | -0.800731 | 1.26E-48 | -1.69E-46 |
MS.gene050083 | MS.gene90011 | 0.805784 | 1.13E-49 | -1.69E-46 |
MS.gene050083 | MS.gene92143 | -0.80903 | 2.31E-50 | -1.69E-46 |
MS.gene050083 | MS.gene96299 | 0.813626 | 2.33E-51 | -1.69E-46 |
MS.gene050083 | MS.gene97558 | 0.808328 | 3.27E-50 | -1.69E-46 |
MS.gene050083 | MS.gene98131 | -0.817411 | 3.34E-52 | -1.69E-46 |
MS.gene050083 | MS.gene98170 | -0.800023 | 1.75E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050083.t1 | MTR_5g064500 | 98.124 | 533 | 9 | 1 | 1 | 533 | 1 | 532 | 0.0 | 1094 |
MS.gene050083.t1 | MTR_5g064500 | 97.753 | 445 | 9 | 1 | 1 | 445 | 1 | 444 | 0.0 | 909 |
MS.gene050083.t1 | MTR_2g009080 | 76.981 | 530 | 98 | 4 | 1 | 530 | 1 | 506 | 0.0 | 844 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050083.t1 | AT1G22410 | 87.689 | 463 | 54 | 1 | 63 | 525 | 63 | 522 | 0.0 | 864 |
MS.gene050083.t1 | AT4G39980 | 77.083 | 528 | 112 | 2 | 1 | 525 | 1 | 522 | 0.0 | 853 |
MS.gene050083.t1 | AT4G33510 | 77.203 | 522 | 95 | 4 | 3 | 524 | 1 | 498 | 0.0 | 842 |
MS.gene050083.t1 | AT4G33510 | 72.527 | 364 | 76 | 4 | 3 | 366 | 1 | 340 | 0.0 | 551 |
Find 161 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATCAGTTGTTCTCATTAT+TGG | 0.134462 | 5.4:-50314000 | None:intergenic |
GATTGAACCGGGTTTGGTTT+TGG | 0.181209 | 5.4:-50311844 | None:intergenic |
GAGACCACATGGAGCCTTTA+TGG | 0.184574 | 5.4:-50314536 | None:intergenic |
ATAATATTCGTGATACTTTC+AGG | 0.200922 | 5.4:+50312192 | MS.gene050083:CDS |
CCATTTGGTGGATGCATTGC+GGG | 0.212646 | 5.4:-50311949 | None:intergenic |
TAATGAGAACAACTGATTTC+TGG | 0.220444 | 5.4:+50314004 | MS.gene050083:CDS |
TCTTCCTGATTCGGGTATTC+AGG | 0.267996 | 5.4:-50312011 | None:intergenic |
TGATTGTGCTGAGAGCTTTA+AGG | 0.274674 | 5.4:+50312157 | MS.gene050083:CDS |
TGGTCAAATGCCGGTTATTA+AGG | 0.287437 | 5.4:+50312250 | MS.gene050083:CDS |
TAGAACTTTGGAGGAGCATT+TGG | 0.303044 | 5.4:+50312094 | MS.gene050083:CDS |
GACGGTGGTTGGTTGAGGTT+TGG | 0.308857 | 5.4:-50311925 | None:intergenic |
GTGGGTTTGGTTTGTTTGGT+TGG | 0.312074 | 5.4:-50311791 | None:intergenic |
TCCTCAAAATTATCTGATCT+TGG | 0.314286 | 5.4:-50312644 | None:intergenic |
ATGAGTTTAACAAGCTCATT+TGG | 0.319944 | 5.4:-50314358 | None:intergenic |
CCAGCTGTCAATGGTCCATT+TGG | 0.323106 | 5.4:-50311964 | None:intergenic |
AGGAAGTTGAAGAGCCTTCT+TGG | 0.327085 | 5.4:-50311991 | None:intergenic |
ACTGCTCGGCCCATATGATT+TGG | 0.332701 | 5.4:+50314103 | MS.gene050083:CDS |
CTTGGATTTCCAGCTGTCAA+TGG | 0.335989 | 5.4:-50311973 | None:intergenic |
GTTGGTTGAGGTTTGGTGGT+GGG | 0.339855 | 5.4:-50311918 | None:intergenic |
TTCCCACCGATTGTGTTTGC+TGG | 0.344055 | 5.4:+50312065 | MS.gene050083:CDS |
TGAAGCTTCCACATCTAATC+AGG | 0.349284 | 5.4:+50314455 | MS.gene050083:CDS |
ATGAGTGTTGTTATGATGTT+TGG | 0.350568 | 5.4:+50312227 | MS.gene050083:CDS |
GTTTGGTTGGAGTAATGATT+TGG | 0.352344 | 5.4:-50311778 | None:intergenic |
ACTAGGTTGGATTCAACTTC+TGG | 0.353531 | 5.4:+50314069 | MS.gene050083:CDS |
TGACGAGGCCCTTGGATTCA+TGG | 0.361274 | 5.4:+50313951 | MS.gene050083:CDS |
ATGGGGAATGAAGGTGGGTT+TGG | 0.362499 | 5.4:-50311804 | None:intergenic |
GGCGAGGATTGAACCGGGTT+TGG | 0.365889 | 5.4:-50311850 | None:intergenic |
GAAGGTGGGTTTGGTTTGTT+TGG | 0.373405 | 5.4:-50311795 | None:intergenic |
GATTCAAGGTCTTCCTGATT+CGG | 0.382092 | 5.4:-50312020 | None:intergenic |
ATCTCGAGATGAACTCCTCC+TGG | 0.383136 | 5.4:-50315495 | None:intergenic |
CTTGGATTCATGGCTGCTGC+TGG | 0.388264 | 5.4:+50313961 | MS.gene050083:CDS |
CTCGCCCCTTCGATGCCATC+AGG | 0.398912 | 5.4:+50314563 | MS.gene050083:CDS |
TGCTGGCTCGGCGGCGTGGA+CGG | 0.401136 | 5.4:-50311871 | None:intergenic |
ATTCAAGGTCTTCCTGATTC+GGG | 0.401205 | 5.4:-50312019 | None:intergenic |
CTGCTCGGCCCATATGATTT+GGG | 0.405345 | 5.4:+50314104 | MS.gene050083:CDS |
TGCTGGTGAAGCTAGAACTT+TGG | 0.406539 | 5.4:+50312082 | MS.gene050083:CDS |
TGCTAATCCCTTGGGAATCA+AGG | 0.411682 | 5.4:+50314182 | MS.gene050083:CDS |
TTTCACCGACCCAAATCATA+TGG | 0.414155 | 5.4:-50314113 | None:intergenic |
ACTTCCTGAATACCCGAATC+AGG | 0.417101 | 5.4:+50312007 | MS.gene050083:CDS |
CAGCCTCCTCTTGAATCTAC+TGG | 0.419266 | 5.4:+50315684 | MS.gene050083:CDS |
CCTCTGAGGATCCGGTGTCC+TGG | 0.425550 | 5.4:-50312735 | None:intergenic |
GAATGGGAGCTGAAAATATG+AGG | 0.428665 | 5.4:+50314431 | MS.gene050083:CDS |
GGGCATGGGTTTGAGCCCGA+TGG | 0.431240 | 5.4:-50311823 | None:intergenic |
AGAACTTTGGAGGAGCATTT+GGG | 0.432167 | 5.4:+50312095 | MS.gene050083:CDS |
GGCATGGGTTTGAGCCCGAT+GGG | 0.435648 | 5.4:-50311822 | None:intergenic |
GGAAACGCGTTTCTTCTTCA+AGG | 0.435848 | 5.4:+50312131 | MS.gene050083:CDS |
GAAAGGACCCGGCAGCTAGA+TGG | 0.442378 | 5.4:+50314132 | MS.gene050083:CDS |
CGAATCATCCTCTGAGGATC+CGG | 0.446078 | 5.4:-50312743 | None:intergenic |
GCATTTGGGTGAAGCTGCTA+TGG | 0.448723 | 5.4:+50312109 | MS.gene050083:CDS |
GTGTAGGTGGGGAGAATGGC+GGG | 0.452534 | 5.4:+50312608 | MS.gene050083:intron |
GTGGACGGCGAGGATTGAAC+CGG | 0.454085 | 5.4:-50311856 | None:intergenic |
TATGCATGGAAACACCATAA+AGG | 0.458987 | 5.4:+50314522 | MS.gene050083:CDS |
GGTTGGTTGAGGTTTGGTGG+TGG | 0.462949 | 5.4:-50311919 | None:intergenic |
GTGATCACAGTTATTCTCCC+TGG | 0.464414 | 5.4:-50314406 | None:intergenic |
AATAACTGTGATCACTAGAA+TGG | 0.468302 | 5.4:+50314414 | MS.gene050083:CDS |
AAGAGGAGTTGCTAATCCCT+TGG | 0.471432 | 5.4:+50314173 | MS.gene050083:CDS |
GTGTCTTCAGAACCGATTCA+AGG | 0.475152 | 5.4:-50312034 | None:intergenic |
AACCGAGTTGACGAGGCCCT+TGG | 0.475450 | 5.4:+50313943 | MS.gene050083:CDS |
GAGGGTTACTCAATGGAACT+TGG | 0.475465 | 5.4:+50312838 | MS.gene050083:CDS |
CATGGGCACCATCTAGCTGC+CGG | 0.479264 | 5.4:-50314140 | None:intergenic |
CCCGCAATGCATCCACCAAA+TGG | 0.485320 | 5.4:+50311949 | MS.gene050083:CDS |
ACCCACCTTCATTCCCCATC+GGG | 0.485451 | 5.4:+50311808 | MS.gene050083:CDS |
ATCAGGGCAGTGCGTAGAGC+AGG | 0.486709 | 5.4:+50314472 | MS.gene050083:CDS |
AGTGTTGTTATGATGTTTGG+TGG | 0.495904 | 5.4:+50312230 | MS.gene050083:CDS |
GGTGGTTGGTTGAGGTTTGG+TGG | 0.498933 | 5.4:-50311922 | None:intergenic |
GTATGTGTAGGTGGGGAGAA+TGG | 0.499019 | 5.4:+50312604 | MS.gene050083:intron |
ATGTTATCCCCTCTGTAACT+AGG | 0.500156 | 5.4:-50312686 | None:intergenic |
CTAGTCAGTGATTGTTCGTA+TGG | 0.504178 | 5.4:-50314051 | None:intergenic |
AGAGGAGTTGCTAATCCCTT+GGG | 0.505158 | 5.4:+50314174 | MS.gene050083:CDS |
ATAACTGTGATCACTAGAAT+GGG | 0.510424 | 5.4:+50314415 | MS.gene050083:CDS |
TGGTGAAGCTAGAACTTTGG+AGG | 0.510903 | 5.4:+50312085 | MS.gene050083:CDS |
GCTGTCAATGGTCCATTTGG+TGG | 0.510953 | 5.4:-50311961 | None:intergenic |
TCCATTTGGTGGATGCATTG+CGG | 0.511516 | 5.4:-50311950 | None:intergenic |
AACAAAGTGAGCAAGGAGAT+AGG | 0.513379 | 5.4:+50312870 | MS.gene050083:CDS |
CAGCAGCAGCCATGAATCCA+AGG | 0.514701 | 5.4:-50313960 | None:intergenic |
TTGAGCCCGATGGGGAATGA+AGG | 0.515160 | 5.4:-50311813 | None:intergenic |
GCTTCACCAGCAAACACAAT+CGG | 0.517024 | 5.4:-50312071 | None:intergenic |
CATTTGGTGGATGCATTGCG+GGG | 0.520482 | 5.4:-50311948 | None:intergenic |
ATATGATTTGGGTCGGTGAA+AGG | 0.524061 | 5.4:+50314115 | MS.gene050083:CDS |
AGCCCGATGGGGAATGAAGG+TGG | 0.524170 | 5.4:-50311810 | None:intergenic |
CTATGCAGAGGGTTACTCAA+TGG | 0.527213 | 5.4:+50312831 | MS.gene050083:CDS |
CGAACAATCACTGACTAGGT+TGG | 0.528366 | 5.4:+50314056 | MS.gene050083:CDS |
ATGCATTTGATGAGAAATCC+AGG | 0.533532 | 5.4:+50312717 | MS.gene050083:CDS |
CAGTTGTTCTCATTATTGGA+TGG | 0.535636 | 5.4:-50313996 | None:intergenic |
GGTTGGAGTAATGATTTGGA+GGG | 0.537013 | 5.4:-50311774 | None:intergenic |
GATTGTGAAGCATTAAGTCT+AGG | 0.540354 | 5.4:-50315606 | None:intergenic |
ACATACCCTGATGGCATCGA+AGG | 0.544063 | 5.4:-50314569 | None:intergenic |
ATGGGCACCATCTAGCTGCC+GGG | 0.546243 | 5.4:-50314139 | None:intergenic |
CCCATGCCCAAAACCAAACC+CGG | 0.547092 | 5.4:+50311837 | MS.gene050083:CDS |
TGGTTGGAGTAATGATTTGG+AGG | 0.552825 | 5.4:-50311775 | None:intergenic |
GATGTTTGGTGGTCAAATGC+CGG | 0.554132 | 5.4:+50312241 | MS.gene050083:CDS |
GGAGTTCATCTCGAGATGAC+AGG | 0.554494 | 5.4:+50315501 | MS.gene050083:CDS |
AACCCACCTTCATTCCCCAT+CGG | 0.554852 | 5.4:+50311807 | MS.gene050083:CDS |
TGGTCTCTACTATGACTGCT+CGG | 0.558656 | 5.4:+50314089 | MS.gene050083:CDS |
CTTTGACCCACCAATGCACT+CGG | 0.560562 | 5.4:-50315535 | None:intergenic |
CCAAATGGACCATTGACAGC+TGG | 0.562154 | 5.4:+50311964 | MS.gene050083:CDS |
TGTGTAGGTGGGGAGAATGG+CGG | 0.564279 | 5.4:+50312607 | MS.gene050083:intron |
ATCCAAGGGCCTCGTCAACT+CGG | 0.564332 | 5.4:-50313945 | None:intergenic |
TTGCTTTCATCATTGCTGAA+AGG | 0.565069 | 5.4:+50315637 | MS.gene050083:CDS |
GCCCATGTGGAATTTCTAAG+AGG | 0.566044 | 5.4:+50314156 | MS.gene050083:CDS |
TTGGCAGGTAAGTGACAAGA+TGG | 0.566076 | 5.4:+50314333 | MS.gene050083:intron |
GTGAAGCTTCCTAGTTACAG+AGG | 0.567289 | 5.4:+50312677 | MS.gene050083:CDS |
TTTATGGTGTTTCCATGCAT+AGG | 0.567351 | 5.4:-50314520 | None:intergenic |
TTTGATGTTCACGAACAAGA+AGG | 0.569277 | 5.4:+50315465 | MS.gene050083:CDS |
CTCCTCTTAGAAATTCCACA+TGG | 0.569920 | 5.4:-50314158 | None:intergenic |
CATACGAACAATCACTGACT+AGG | 0.572547 | 5.4:+50314052 | MS.gene050083:CDS |
GTCTAGGATCGCAGTGTGTG+TGG | 0.573843 | 5.4:-50315590 | None:intergenic |
TTCACCGACCCAAATCATAT+GGG | 0.576952 | 5.4:-50314112 | None:intergenic |
CGCACTGCCCTGATTAGATG+TGG | 0.581273 | 5.4:-50314463 | None:intergenic |
GAACAAGAAGGAAGCCACCC+AGG | 0.583974 | 5.4:+50315477 | MS.gene050083:CDS |
TGATTTGGAGGGAATGAGAG+AGG | 0.585499 | 5.4:-50311763 | None:intergenic |
TTCACTGAACAAAGTGAGCA+AGG | 0.586199 | 5.4:+50312863 | MS.gene050083:CDS |
GAATCAGGAAGACCTTGAAT+CGG | 0.587258 | 5.4:+50312022 | MS.gene050083:CDS |
TTTGGGTCGGTGAAAGGACC+CGG | 0.587829 | 5.4:+50314121 | MS.gene050083:CDS |
GTGGTTATGCTGCTATGCAG+AGG | 0.589556 | 5.4:+50312819 | MS.gene050083:CDS |
CATTTGGGTGAAGCTGCTAT+GGG | 0.590193 | 5.4:+50312110 | MS.gene050083:CDS |
GTACAAACCTTGATTCCCAA+GGG | 0.590839 | 5.4:-50314189 | None:intergenic |
TTGAATCCTCAAAACAAACC+AGG | 0.591600 | 5.4:+50314388 | MS.gene050083:CDS |
TTTGGAGGGAATGAGAGAGG+TGG | 0.594242 | 5.4:-50311760 | None:intergenic |
GCCCGATGGGGAATGAAGGT+GGG | 0.597597 | 5.4:-50311809 | None:intergenic |
TCTCGAGATGAACTCCTCCT+GGG | 0.600054 | 5.4:-50315494 | None:intergenic |
AGCAGCAGCCATGAATCCAA+GGG | 0.602803 | 5.4:-50313959 | None:intergenic |
AATGTGACCGAGTGCATTGG+TGG | 0.602808 | 5.4:+50315528 | MS.gene050083:CDS |
TGTACAAACCTTGATTCCCA+AGG | 0.603751 | 5.4:-50314190 | None:intergenic |
CATACCCTGATGGCATCGAA+GGG | 0.606030 | 5.4:-50314568 | None:intergenic |
TGGGTCAGCGATCCTATGCA+TGG | 0.606343 | 5.4:+50314508 | MS.gene050083:CDS |
TGAAGCTTCCTAGTTACAGA+GGG | 0.612272 | 5.4:+50312678 | MS.gene050083:CDS |
CACCAGCAAACACAATCGGT+GGG | 0.618762 | 5.4:-50312067 | None:intergenic |
TCACCAGCAAACACAATCGG+TGG | 0.619065 | 5.4:-50312068 | None:intergenic |
GAGCAGGACAAATTGTCACA+TGG | 0.619461 | 5.4:+50314488 | MS.gene050083:CDS |
TGGTTATGCTGCTATGCAGA+GGG | 0.620511 | 5.4:+50312820 | MS.gene050083:CDS |
TGACAGCTGGAAATCCAAGA+AGG | 0.620877 | 5.4:+50311977 | MS.gene050083:CDS |
GCTCGGCGGCGTGGACGGCG+AGG | 0.621822 | 5.4:-50311866 | None:intergenic |
CAAAATCCAGTAGATTCAAG+AGG | 0.624319 | 5.4:-50315690 | None:intergenic |
TCGGCCCATATGATTTGGGT+CGG | 0.625917 | 5.4:+50314108 | MS.gene050083:CDS |
CAAAATGTGACCGAGTGCAT+TGG | 0.625971 | 5.4:+50315525 | MS.gene050083:CDS |
TGAATCCTCAAAACAAACCA+GGG | 0.631348 | 5.4:+50314389 | MS.gene050083:CDS |
ATGAGAATTACATACCCTGA+TGG | 0.631649 | 5.4:-50314578 | None:intergenic |
AGCAGGACAAATTGTCACAT+GGG | 0.633535 | 5.4:+50314489 | MS.gene050083:CDS |
AATCCAGTAGATTCAAGAGG+AGG | 0.634268 | 5.4:-50315687 | None:intergenic |
GCAGCTAGATGGTGCCCATG+TGG | 0.634651 | 5.4:+50314143 | MS.gene050083:CDS |
TGGACGGCGAGGATTGAACC+GGG | 0.636196 | 5.4:-50311855 | None:intergenic |
AACGCGTTTCTTCTTCAAGG+TGG | 0.636605 | 5.4:+50312134 | MS.gene050083:CDS |
GCTTGCTAACCGAGTTGACG+AGG | 0.637217 | 5.4:+50313936 | MS.gene050083:CDS |
TCGCCCCTTCGATGCCATCA+GGG | 0.638610 | 5.4:+50314564 | MS.gene050083:CDS |
AATGGGAGCTGAAAATATGA+GGG | 0.641776 | 5.4:+50314432 | MS.gene050083:CDS |
GCATGGGTTTGAGCCCGATG+GGG | 0.643491 | 5.4:-50311821 | None:intergenic |
GAAGCTTCCACATCTAATCA+GGG | 0.649089 | 5.4:+50314456 | MS.gene050083:CDS |
CGAGATGAACTCCTCCTGGG+TGG | 0.649169 | 5.4:-50315491 | None:intergenic |
ATTTGGTGGATGCATTGCGG+GGG | 0.649793 | 5.4:-50311947 | None:intergenic |
CCAGGACACCGGATCCTCAG+AGG | 0.650897 | 5.4:+50312735 | MS.gene050083:CDS |
TGATGAGAAATCCAGGACAC+CGG | 0.656139 | 5.4:+50312724 | MS.gene050083:CDS |
TACAGAGGGGATAACATCAA+CGG | 0.665031 | 5.4:+50312692 | MS.gene050083:CDS |
CAAGAAGGAAGCCACCCAGG+AGG | 0.672096 | 5.4:+50315480 | MS.gene050083:CDS |
TCCTCTTAGAAATTCCACAT+GGG | 0.686989 | 5.4:-50314157 | None:intergenic |
ATACCCTGATGGCATCGAAG+GGG | 0.693071 | 5.4:-50314567 | None:intergenic |
CAACTCGGTTAGCAAGCTCA+CGG | 0.698471 | 5.4:-50313930 | None:intergenic |
TAAGCACGAATCATCCTCTG+AGG | 0.708055 | 5.4:-50312749 | None:intergenic |
ATGTGACCGAGTGCATTGGT+GGG | 0.709519 | 5.4:+50315529 | MS.gene050083:CDS |
AACACCATAAAGGCTCCATG+TGG | 0.710721 | 5.4:+50314532 | MS.gene050083:CDS |
GAAGCTTCCTAGTTACAGAG+GGG | 0.779581 | 5.4:+50312679 | MS.gene050083:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATGAAAGATTAAAAATA+AGG | + | chr5.4:50313561-50313580 | MS.gene050083:intron | 10.0% |
!! | AAGATAATAATTTAAAAAAG+AGG | + | chr5.4:50313601-50313620 | MS.gene050083:intron | 10.0% |
!! | TTCTACTTAAAATTAAAATA+AGG | + | chr5.4:50314762-50314781 | MS.gene050083:intron | 10.0% |
!!! | TATATATAAAATTTTGAGTT+TGG | + | chr5.4:50314886-50314905 | MS.gene050083:intron | 10.0% |
!!! | TTCTTAATTTTTTTTTTTCA+AGG | + | chr5.4:50312919-50312938 | MS.gene050083:intron | 10.0% |
!!! | TTTTTTAAGTGAATTTTTTT+TGG | + | chr5.4:50313330-50313349 | MS.gene050083:intron | 10.0% |
!! | AAATCACAAAAATCAAATAT+TGG | - | chr5.4:50315378-50315397 | None:intergenic | 15.0% |
!! | AATAAAAATTCACACTAATA+TGG | - | chr5.4:50315306-50315325 | None:intergenic | 15.0% |
!! | AATCACAAAAATCAAATATT+GGG | - | chr5.4:50315377-50315396 | None:intergenic | 15.0% |
!! | ATAAACTAAAAAATATACCA+AGG | - | chr5.4:50312975-50312994 | None:intergenic | 15.0% |
!! | TAAATATGTTATTATGATTC+TGG | + | chr5.4:50312366-50312385 | MS.gene050083:intron | 15.0% |
!!! | CTATGTAAATATTTATCTTT+TGG | + | chr5.4:50313527-50313546 | MS.gene050083:intron | 15.0% |
!!! | TATATTATTTTGTTATGCAT+TGG | + | chr5.4:50314314-50314333 | MS.gene050083:intron | 15.0% |
!!! | TTGATTTTAAATCAAAAAGT+AGG | - | chr5.4:50314656-50314675 | None:intergenic | 15.0% |
!!! | TTGGTATATTTTTTAGTTTA+TGG | + | chr5.4:50312974-50312993 | MS.gene050083:intron | 15.0% |
!! | AAAACATTGAAAAAGATTAG+TGG | + | chr5.4:50314786-50314805 | MS.gene050083:intron | 20.0% |
!! | AAACATTGAAAAAGATTAGT+GGG | + | chr5.4:50314787-50314806 | MS.gene050083:intron | 20.0% |
!! | CTCAAAAAAAAATTGTAGAA+TGG | + | chr5.4:50313290-50313309 | MS.gene050083:intron | 20.0% |
!! | TTAAAGAATAGTTAATCTCA+TGG | + | chr5.4:50313693-50313712 | MS.gene050083:intron | 20.0% |
!!! | ATTTATCTTTTGGTTTTCAA+TGG | + | chr5.4:50313537-50313556 | MS.gene050083:intron | 20.0% |
!!! | GAAATCATTTTTGTATTCTT+TGG | + | chr5.4:50314963-50314982 | MS.gene050083:intron | 20.0% |
!!! | GATTCTTGAATTTTTGTTTA+TGG | + | chr5.4:50313180-50313199 | MS.gene050083:intron | 20.0% |
!!! | GGATATATAAATGTGAATTT+TGG | + | chr5.4:50313876-50313895 | MS.gene050083:intron | 20.0% |
!!! | TCTTTATTTTGTTTCTAACA+TGG | + | chr5.4:50313835-50313854 | MS.gene050083:intron | 20.0% |
!!! | TGCTAAATTGTAATTCTTTT+GGG | + | chr5.4:50315256-50315275 | MS.gene050083:intron | 20.0% |
!!! | TGTGATTCTTATTTGTTATA+TGG | + | chr5.4:50312946-50312965 | MS.gene050083:intron | 20.0% |
! | AAATCAGTTGTTCTCATTAT+TGG | - | chr5.4:50314003-50314022 | None:intergenic | 25.0% |
! | AACATTGAAAAAGATTAGTG+GGG | + | chr5.4:50314788-50314807 | MS.gene050083:intron | 25.0% |
! | AATGTCATTATTGACCAATT+GGG | + | chr5.4:50314994-50315013 | MS.gene050083:intron | 25.0% |
! | AATTTAACAGAAGAGACTAA+AGG | - | chr5.4:50315165-50315184 | None:intergenic | 25.0% |
! | AGTATATTCTCAACAAAAGT+GGG | - | chr5.4:50313268-50313287 | None:intergenic | 25.0% |
! | ATAATATTCGTGATACTTTC+AGG | + | chr5.4:50312192-50312211 | MS.gene050083:CDS | 25.0% |
! | ATTTAACAGAAGAGACTAAA+GGG | - | chr5.4:50315164-50315183 | None:intergenic | 25.0% |
! | GACAAGTTTCGTATATTTAA+TGG | - | chr5.4:50315142-50315161 | None:intergenic | 25.0% |
! | GACATAATTCAAAGTCTAAA+AGG | - | chr5.4:50313131-50313150 | None:intergenic | 25.0% |
! | TATATATAAGCCTTGAAGTT+TGG | - | chr5.4:50314874-50314893 | None:intergenic | 25.0% |
! | TGATGATTGATATAACAAGT+GGG | + | chr5.4:50313380-50313399 | MS.gene050083:intron | 25.0% |
! | TGGTAAATTAAACGTATTCT+TGG | + | chr5.4:50313896-50313915 | MS.gene050083:intron | 25.0% |
! | TGTCTAAGAATTATGTCTAA+AGG | + | chr5.4:50313147-50313166 | MS.gene050083:intron | 25.0% |
! | TTAAGAAAAAGACAAAGTGA+AGG | - | chr5.4:50312906-50312925 | None:intergenic | 25.0% |
! | TTATAATCGCTTATAAGTTG+AGG | + | chr5.4:50314243-50314262 | MS.gene050083:intron | 25.0% |
! | TTCACCTAAAATTGTCAATA+TGG | + | chr5.4:50315233-50315252 | MS.gene050083:intron | 25.0% |
! | TTGGGATTAAAGTTATAAAG+TGG | - | chr5.4:50315359-50315378 | None:intergenic | 25.0% |
!! | CTGGAAAGAATCAATTTTAT+CGG | + | chr5.4:50312385-50312404 | MS.gene050083:intron | 25.0% |
!! | GAAGTTTTTACCTTAATAAC+CGG | - | chr5.4:50312263-50312282 | None:intergenic | 25.0% |
!! | GTGCTAAATTGTAATTCTTT+TGG | + | chr5.4:50315255-50315274 | MS.gene050083:intron | 25.0% |
!!! | AAATTGTAATTCTTTTGGGT+AGG | + | chr5.4:50315260-50315279 | MS.gene050083:intron | 25.0% |
!!! | AGTCTTGTATTTGTTGTTAT+GGG | + | chr5.4:50313013-50313032 | MS.gene050083:intron | 25.0% |
!!! | AGTGGAACAATTTCATTTTT+TGG | - | chr5.4:50314692-50314711 | None:intergenic | 25.0% |
!!! | ATAAAATTTTGAGTTTGGAG+TGG | + | chr5.4:50314891-50314910 | MS.gene050083:intron | 25.0% |
!!! | TAGTCTTGTATTTGTTGTTA+TGG | + | chr5.4:50313012-50313031 | MS.gene050083:intron | 25.0% |
!!! | TATTTGTTATATGGTTTCCT+TGG | + | chr5.4:50312955-50312974 | MS.gene050083:intron | 25.0% |
!!! | TCAACTCTTTCTTTTTTAGT+TGG | + | chr5.4:50314600-50314619 | MS.gene050083:intron | 25.0% |
AAATGAAATTGTTCCACTTG+TGG | + | chr5.4:50314694-50314713 | MS.gene050083:intron | 30.0% | |
AATAACTGTGATCACTAGAA+TGG | + | chr5.4:50314414-50314433 | MS.gene050083:CDS | 30.0% | |
AATTAAACGTATTCTTGGCA+TGG | + | chr5.4:50313901-50313920 | MS.gene050083:intron | 30.0% | |
ACAAAAGTCAGTGACATTAT+TGG | - | chr5.4:50315407-50315426 | None:intergenic | 30.0% | |
AGAAACAAAATAAAGAGCTG+TGG | - | chr5.4:50313831-50313850 | None:intergenic | 30.0% | |
AGTCAACATCATTATTTGAG+GGG | - | chr5.4:50313445-50313464 | None:intergenic | 30.0% | |
AGTCTCTTCTGTTAAATTGA+GGG | + | chr5.4:50315167-50315186 | MS.gene050083:intron | 30.0% | |
ATAACTGTGATCACTAGAAT+GGG | + | chr5.4:50314415-50314434 | MS.gene050083:CDS | 30.0% | |
ATGAGTTTAACAAGCTCATT+TGG | - | chr5.4:50314361-50314380 | None:intergenic | 30.0% | |
CAATCTAAGTCTTTATCCAA+CGG | + | chr5.4:50313781-50313800 | MS.gene050083:intron | 30.0% | |
CAGTCAACATCATTATTTGA+GGG | - | chr5.4:50313446-50313465 | None:intergenic | 30.0% | |
GAAAAGACAAAAACATGTCT+TGG | - | chr5.4:50313213-50313232 | None:intergenic | 30.0% | |
GAATGTCATTATTGACCAAT+TGG | + | chr5.4:50314993-50315012 | MS.gene050083:intron | 30.0% | |
GAGTATATTCTCAACAAAAG+TGG | - | chr5.4:50313269-50313288 | None:intergenic | 30.0% | |
GATGATTGATATAACAAGTG+GGG | + | chr5.4:50313381-50313400 | MS.gene050083:intron | 30.0% | |
GTGATGATTGATATAACAAG+TGG | + | chr5.4:50313379-50313398 | MS.gene050083:intron | 30.0% | |
GTTTCACTGAATTAATACAC+AGG | + | chr5.4:50315425-50315444 | MS.gene050083:intron | 30.0% | |
GTTTCATTCATGATTGACAA+AGG | + | chr5.4:50313352-50313371 | MS.gene050083:intron | 30.0% | |
TAGTCTCTTCTGTTAAATTG+AGG | + | chr5.4:50315166-50315185 | MS.gene050083:intron | 30.0% | |
TCCTCAAAATTATCTGATCT+TGG | - | chr5.4:50312647-50312666 | None:intergenic | 30.0% | |
TGAAGATGAAAATGTGAAAG+TGG | + | chr5.4:50312576-50312595 | MS.gene050083:intron | 30.0% | |
TGATGTCTCTTTCTATAAGT+TGG | - | chr5.4:50315334-50315353 | None:intergenic | 30.0% | |
TGGTCTAGTTATGTTAATGT+TGG | + | chr5.4:50313855-50313874 | MS.gene050083:intron | 30.0% | |
! | AGCACCATATTGACAATTTT+AGG | - | chr5.4:50315240-50315259 | None:intergenic | 30.0% |
! | ATGAGTGTTGTTATGATGTT+TGG | + | chr5.4:50312227-50312246 | MS.gene050083:CDS | 30.0% |
! | ATGTTTAATGTGGTTGGTAT+TGG | + | chr5.4:50313408-50313427 | MS.gene050083:intron | 30.0% |
! | GAAAGAATCAATTTTATCGG+TGG | + | chr5.4:50312388-50312407 | MS.gene050083:intron | 30.0% |
! | GTGTAGTTGATGTTAATATG+AGG | + | chr5.4:50313662-50313681 | MS.gene050083:intron | 30.0% |
! | TAATGAGAACAACTGATTTC+TGG | + | chr5.4:50314004-50314023 | MS.gene050083:CDS | 30.0% |
! | TGTTTAATGTGGTTGGTATT+GGG | + | chr5.4:50313409-50313428 | MS.gene050083:intron | 30.0% |
!! | AAAGTGGATTTTGTATGTGT+AGG | + | chr5.4:50312592-50312611 | MS.gene050083:intron | 30.0% |
!! | GATAATTTTGAGGAGAAGAA+TGG | + | chr5.4:50312653-50312672 | MS.gene050083:CDS | 30.0% |
!! | TTATTTTGTTATGCATTGGC+AGG | + | chr5.4:50314318-50314337 | MS.gene050083:intron | 30.0% |
AATGGGAGCTGAAAATATGA+GGG | + | chr5.4:50314432-50314451 | MS.gene050083:CDS | 35.0% | |
ACTAGATTATGAGCTCATCA+CGG | - | chr5.4:50312527-50312546 | None:intergenic | 35.0% | |
ACTATTTCACCTACTACAAG+TGG | - | chr5.4:50314932-50314951 | None:intergenic | 35.0% | |
AGGATTGGAAAAACTCACTT+TGG | + | chr5.4:50315049-50315068 | MS.gene050083:intron | 35.0% | |
ATCACGGTCAGTAAAAATCT+CGG | - | chr5.4:50312511-50312530 | None:intergenic | 35.0% | |
ATGAGAATTACATACCCTGA+TGG | - | chr5.4:50314581-50314600 | None:intergenic | 35.0% | |
ATGCATTTGATGAGAAATCC+AGG | + | chr5.4:50312717-50312736 | MS.gene050083:CDS | 35.0% | |
ATTGAAAAAGATTAGTGGGG+AGG | + | chr5.4:50314791-50314810 | MS.gene050083:intron | 35.0% | |
CAAAATCCAGTAGATTCAAG+AGG | - | chr5.4:50315693-50315712 | None:intergenic | 35.0% | |
CAATCCTCAGACATAGTTAA+GGG | - | chr5.4:50315036-50315055 | None:intergenic | 35.0% | |
CAGTTGTTCTCATTATTGGA+TGG | - | chr5.4:50313999-50314018 | None:intergenic | 35.0% | |
CGTTGGATAAAGACTTAGAT+TGG | - | chr5.4:50313783-50313802 | None:intergenic | 35.0% | |
CTAACTTCAATCCTTTGCAA+TGG | + | chr5.4:50313721-50313740 | MS.gene050083:intron | 35.0% | |
GCAGTCAACATCATTATTTG+AGG | - | chr5.4:50313447-50313466 | None:intergenic | 35.0% | |
GGGCATCTCTACAAAAATTT+GGG | - | chr5.4:50315199-50315218 | None:intergenic | 35.0% | |
GTTTGGTTGGAGTAATGATT+TGG | - | chr5.4:50311781-50311800 | None:intergenic | 35.0% | |
TAGGTGGGATTAGACTTTAA+GGG | + | chr5.4:50315279-50315298 | MS.gene050083:intron | 35.0% | |
TATGCATGGAAACACCATAA+AGG | + | chr5.4:50314522-50314541 | MS.gene050083:CDS | 35.0% | |
TATTCGCATAACATCGACAT+TGG | - | chr5.4:50312467-50312486 | None:intergenic | 35.0% | |
TCAACTATGTTAGACCCAAT+TGG | - | chr5.4:50315011-50315030 | None:intergenic | 35.0% | |
TCCTCTTAGAAATTCCACAT+GGG | - | chr5.4:50314160-50314179 | None:intergenic | 35.0% | |
TGAATCCTCAAAACAAACCA+GGG | + | chr5.4:50314389-50314408 | MS.gene050083:CDS | 35.0% | |
TTGAATCCTCAAAACAAACC+AGG | + | chr5.4:50314388-50314407 | MS.gene050083:CDS | 35.0% | |
TTGCTTTCATCATTGCTGAA+AGG | + | chr5.4:50315637-50315656 | MS.gene050083:CDS | 35.0% | |
TTTATGGTGTTTCCATGCAT+AGG | - | chr5.4:50314523-50314542 | None:intergenic | 35.0% | |
TTTGACTAATGTATGTGAGC+TGG | + | chr5.4:50314831-50314850 | MS.gene050083:intron | 35.0% | |
TTTGATGTTCACGAACAAGA+AGG | + | chr5.4:50315465-50315484 | MS.gene050083:CDS | 35.0% | |
! | AGGGCATCTCTACAAAAATT+TGG | - | chr5.4:50315200-50315219 | None:intergenic | 35.0% |
! | AGTGTTGTTATGATGTTTGG+TGG | + | chr5.4:50312230-50312249 | MS.gene050083:CDS | 35.0% |
! | ATCAATTTTATCGGTGGAGA+TGG | + | chr5.4:50312394-50312413 | MS.gene050083:intron | 35.0% |
! | GATTGTGAAGCATTAAGTCT+AGG | - | chr5.4:50315609-50315628 | None:intergenic | 35.0% |
! | GCCAAGATCAGATAATTTTG+AGG | + | chr5.4:50312643-50312662 | MS.gene050083:CDS | 35.0% |
! | TGGATTTTGTATGTGTAGGT+GGG | + | chr5.4:50312596-50312615 | MS.gene050083:intron | 35.0% |
!! | ATGGTAAGGATTTGACTTGT+TGG | + | chr5.4:50312413-50312432 | MS.gene050083:intron | 35.0% |
!! | TGTAATTCTTTTGGGTAGGT+GGG | + | chr5.4:50315264-50315283 | MS.gene050083:intron | 35.0% |
!! | TTGTAATTCTTTTGGGTAGG+TGG | + | chr5.4:50315263-50315282 | MS.gene050083:intron | 35.0% |
!!! | AATTTTGAGTTTGGAGTGGT+AGG | + | chr5.4:50314895-50314914 | MS.gene050083:intron | 35.0% |
AACAAAGTGAGCAAGGAGAT+AGG | + | chr5.4:50312870-50312889 | MS.gene050083:CDS | 40.0% | |
AATCCAGTAGATTCAAGAGG+AGG | - | chr5.4:50315690-50315709 | None:intergenic | 40.0% | |
AGCAGGACAAATTGTCACAT+GGG | + | chr5.4:50314489-50314508 | MS.gene050083:CDS | 40.0% | |
ATGTTATCCCCTCTGTAACT+AGG | - | chr5.4:50312689-50312708 | None:intergenic | 40.0% | |
ATTCAAGGTCTTCCTGATTC+GGG | - | chr5.4:50312022-50312041 | None:intergenic | 40.0% | |
CAAAGATTGTGAACCACAAG+TGG | - | chr5.4:50314710-50314729 | None:intergenic | 40.0% | |
CCAATCCTCAGACATAGTTA+AGG | - | chr5.4:50315037-50315056 | None:intergenic | 40.0% | |
CCTTAACTATGTCTGAGGAT+TGG | + | chr5.4:50315034-50315053 | MS.gene050083:intron | 40.0% | |
CTAGTCAGTGATTGTTCGTA+TGG | - | chr5.4:50314054-50314073 | None:intergenic | 40.0% | |
CTCCTCTTAGAAATTCCACA+TGG | - | chr5.4:50314161-50314180 | None:intergenic | 40.0% | |
GAAGCTTCCACATCTAATCA+GGG | + | chr5.4:50314456-50314475 | MS.gene050083:CDS | 40.0% | |
GAATCAGGAAGACCTTGAAT+CGG | + | chr5.4:50312022-50312041 | MS.gene050083:CDS | 40.0% | |
GAATCCCTTAACTATGTCTG+AGG | + | chr5.4:50315029-50315048 | MS.gene050083:intron | 40.0% | |
GAATGGGAGCTGAAAATATG+AGG | + | chr5.4:50314431-50314450 | MS.gene050083:CDS | 40.0% | |
GATTCAAGGTCTTCCTGATT+CGG | - | chr5.4:50312023-50312042 | None:intergenic | 40.0% | |
GGATGCATGTTTAATGTGGT+TGG | + | chr5.4:50313402-50313421 | MS.gene050083:intron | 40.0% | |
GTACAAACCTTGATTCCCAA+GGG | - | chr5.4:50314192-50314211 | None:intergenic | 40.0% | |
GTAGGTGGGATTAGACTTTA+AGG | + | chr5.4:50315278-50315297 | MS.gene050083:intron | 40.0% | |
TACAGAGGGGATAACATCAA+CGG | + | chr5.4:50312692-50312711 | MS.gene050083:CDS | 40.0% | |
TCACGGTCAGTAAAAATCTC+GGG | - | chr5.4:50312510-50312529 | None:intergenic | 40.0% | |
TGAAGCTTCCACATCTAATC+AGG | + | chr5.4:50314455-50314474 | MS.gene050083:CDS | 40.0% | |
TGAAGCTTCCTAGTTACAGA+GGG | + | chr5.4:50312678-50312697 | MS.gene050083:CDS | 40.0% | |
TGATTGTGCTGAGAGCTTTA+AGG | + | chr5.4:50312157-50312176 | MS.gene050083:CDS | 40.0% | |
TGTACAAACCTTGATTCCCA+AGG | - | chr5.4:50314193-50314212 | None:intergenic | 40.0% | |
TTCACCGACCCAAATCATAT+GGG | - | chr5.4:50314115-50314134 | None:intergenic | 40.0% | |
TTCACTGAACAAAGTGAGCA+AGG | + | chr5.4:50312863-50312882 | MS.gene050083:CDS | 40.0% | |
TTCAGAGATGAATCATACCG+AGG | - | chr5.4:50315086-50315105 | None:intergenic | 40.0% | |
TTTCACCGACCCAAATCATA+TGG | - | chr5.4:50314116-50314135 | None:intergenic | 40.0% | |
! | ACTAGGTTGGATTCAACTTC+TGG | + | chr5.4:50314069-50314088 | MS.gene050083:CDS | 40.0% |
! | ATATGATTTGGGTCGGTGAA+AGG | + | chr5.4:50314115-50314134 | MS.gene050083:CDS | 40.0% |
! | CATACGAACAATCACTGACT+AGG | + | chr5.4:50314052-50314071 | MS.gene050083:CDS | 40.0% |
! | GGATTTTGTATGTGTAGGTG+GGG | + | chr5.4:50312597-50312616 | MS.gene050083:intron | 40.0% |
! | GGTTGGAGTAATGATTTGGA+GGG | - | chr5.4:50311777-50311796 | None:intergenic | 40.0% |
! | GTGGATTTTGTATGTGTAGG+TGG | + | chr5.4:50312595-50312614 | MS.gene050083:intron | 40.0% |
! | TAATGTGGTTGGTATTGGGT+TGG | + | chr5.4:50313413-50313432 | MS.gene050083:intron | 40.0% |
! | TGGTCAAATGCCGGTTATTA+AGG | + | chr5.4:50312250-50312269 | MS.gene050083:CDS | 40.0% |
! | TGGTTGGAGTAATGATTTGG+AGG | - | chr5.4:50311778-50311797 | None:intergenic | 40.0% |
! | TTTTATCGGTGGAGATGGTA+AGG | + | chr5.4:50312399-50312418 | MS.gene050083:intron | 40.0% |
!! | ACCTTTGAGACACTCTCAAA+AGG | - | chr5.4:50313241-50313260 | None:intergenic | 40.0% |
!! | AGAACTTTGGAGGAGCATTT+GGG | + | chr5.4:50312095-50312114 | MS.gene050083:CDS | 40.0% |
!! | GTAAGGATTTGACTTGTTGG+TGG | + | chr5.4:50312416-50312435 | MS.gene050083:intron | 40.0% |
!! | TAGAACTTTGGAGGAGCATT+TGG | + | chr5.4:50312094-50312113 | MS.gene050083:CDS | 40.0% |
!!! | ATTCTCCCTGGTTTGTTTTG+AGG | - | chr5.4:50314397-50314416 | None:intergenic | 40.0% |
!!! | ATTGAACCGGGTTTGGTTTT+GGG | - | chr5.4:50311846-50311865 | None:intergenic | 40.0% |
AAACGTATTCTTGGCATGGC+AGG | + | chr5.4:50313905-50313924 | MS.gene050083:intron | 45.0% | |
AACACCATAAAGGCTCCATG+TGG | + | chr5.4:50314532-50314551 | MS.gene050083:CDS | 45.0% | |
AACGCGTTTCTTCTTCAAGG+TGG | + | chr5.4:50312134-50312153 | MS.gene050083:CDS | 45.0% | |
AAGAGGAGTTGCTAATCCCT+TGG | + | chr5.4:50314173-50314192 | MS.gene050083:CDS | 45.0% | |
ACTTCCTGAATACCCGAATC+AGG | + | chr5.4:50312007-50312026 | MS.gene050083:CDS | 45.0% | |
AGAGGAGTTGCTAATCCCTT+GGG | + | chr5.4:50314174-50314193 | MS.gene050083:CDS | 45.0% | |
AGGAAGTTGAAGAGCCTTCT+TGG | - | chr5.4:50311994-50312013 | None:intergenic | 45.0% | |
AGGTGAACAGCGAATCATCA+AGG | - | chr5.4:50315220-50315239 | None:intergenic | 45.0% | |
CAAAATGTGACCGAGTGCAT+TGG | + | chr5.4:50315525-50315544 | MS.gene050083:CDS | 45.0% | |
CACGGTCAGTAAAAATCTCG+GGG | - | chr5.4:50312509-50312528 | None:intergenic | 45.0% | |
CATTTGGGTGAAGCTGCTAT+GGG | + | chr5.4:50312110-50312129 | MS.gene050083:CDS | 45.0% | |
CTATGCAGAGGGTTACTCAA+TGG | + | chr5.4:50312831-50312850 | MS.gene050083:CDS | 45.0% | |
CTTGGATTTCCAGCTGTCAA+TGG | - | chr5.4:50311976-50311995 | None:intergenic | 45.0% | |
GAAGCTTCCTAGTTACAGAG+GGG | + | chr5.4:50312679-50312698 | MS.gene050083:CDS | 45.0% | |
GAGCAGGACAAATTGTCACA+TGG | + | chr5.4:50314488-50314507 | MS.gene050083:CDS | 45.0% | |
GAGGGTTACTCAATGGAACT+TGG | + | chr5.4:50312838-50312857 | MS.gene050083:CDS | 45.0% | |
GCCCATGTGGAATTTCTAAG+AGG | + | chr5.4:50314156-50314175 | MS.gene050083:CDS | 45.0% | |
GCTTCACCAGCAAACACAAT+CGG | - | chr5.4:50312074-50312093 | None:intergenic | 45.0% | |
GGAAACGCGTTTCTTCTTCA+AGG | + | chr5.4:50312131-50312150 | MS.gene050083:CDS | 45.0% | |
GGTGAACAGCGAATCATCAA+GGG | - | chr5.4:50315219-50315238 | None:intergenic | 45.0% | |
GTGAAGCTTCCTAGTTACAG+AGG | + | chr5.4:50312677-50312696 | MS.gene050083:CDS | 45.0% | |
GTGATCACAGTTATTCTCCC+TGG | - | chr5.4:50314409-50314428 | None:intergenic | 45.0% | |
GTGGGGATGCATGTTTAATG+TGG | + | chr5.4:50313398-50313417 | MS.gene050083:intron | 45.0% | |
TAAGCACGAATCATCCTCTG+AGG | - | chr5.4:50312752-50312771 | None:intergenic | 45.0% | |
TGACAGCTGGAAATCCAAGA+AGG | + | chr5.4:50311977-50311996 | MS.gene050083:CDS | 45.0% | |
TGATGAGAAATCCAGGACAC+CGG | + | chr5.4:50312724-50312743 | MS.gene050083:CDS | 45.0% | |
TGCTAATCCCTTGGGAATCA+AGG | + | chr5.4:50314182-50314201 | MS.gene050083:CDS | 45.0% | |
TGCTGGTGAAGCTAGAACTT+TGG | + | chr5.4:50312082-50312101 | MS.gene050083:CDS | 45.0% | |
TGGTCTCTACTATGACTGCT+CGG | + | chr5.4:50314089-50314108 | MS.gene050083:CDS | 45.0% | |
TGGTGAAGCTAGAACTTTGG+AGG | + | chr5.4:50312085-50312104 | MS.gene050083:CDS | 45.0% | |
TGGTTATGCTGCTATGCAGA+GGG | + | chr5.4:50312820-50312839 | MS.gene050083:CDS | 45.0% | |
TTGGCAGGTAAGTGACAAGA+TGG | + | chr5.4:50314333-50314352 | MS.gene050083:intron | 45.0% | |
! | CGAACAATCACTGACTAGGT+TGG | + | chr5.4:50314056-50314075 | MS.gene050083:CDS | 45.0% |
! | CTTCTCAGAGCTTTTGCTAC+TGG | + | chr5.4:50312797-50312816 | MS.gene050083:CDS | 45.0% |
! | GATGTTTGGTGGTCAAATGC+CGG | + | chr5.4:50312241-50312260 | MS.gene050083:CDS | 45.0% |
! | GTGTCTTCAGAACCGATTCA+AGG | - | chr5.4:50312037-50312056 | None:intergenic | 45.0% |
! | TCCATTTGGTGGATGCATTG+CGG | - | chr5.4:50311953-50311972 | None:intergenic | 45.0% |
! | TGATTTGGAGGGAATGAGAG+AGG | - | chr5.4:50311766-50311785 | None:intergenic | 45.0% |
! | TTTGAGTTTGGAGTGGTAGG+TGG | + | chr5.4:50314898-50314917 | MS.gene050083:intron | 45.0% |
!! | GAAGGTGGGTTTGGTTTGTT+TGG | - | chr5.4:50311798-50311817 | None:intergenic | 45.0% |
!! | GATTGAACCGGGTTTGGTTT+TGG | - | chr5.4:50311847-50311866 | None:intergenic | 45.0% |
!! | GTGGGTTTGGTTTGTTTGGT+TGG | - | chr5.4:50311794-50311813 | None:intergenic | 45.0% |
!! | TCTTCCTGATTCGGGTATTC+AGG | - | chr5.4:50312014-50312033 | None:intergenic | 45.0% |
!! | TTGGTGGATTTGAATCTGCG+AGG | + | chr5.4:50312432-50312451 | MS.gene050083:intron | 45.0% |
!!! | GCCTTTTGAGAGTGTCTCAA+AGG | + | chr5.4:50313237-50313256 | MS.gene050083:intron | 45.0% |
AACAGCTGCAGCCATTGCAA+AGG | - | chr5.4:50313735-50313754 | None:intergenic | 50.0% | |
AACCCACCTTCATTCCCCAT+CGG | + | chr5.4:50311807-50311826 | MS.gene050083:CDS | 50.0% | |
AATGTGACCGAGTGCATTGG+TGG | + | chr5.4:50315528-50315547 | MS.gene050083:CDS | 50.0% | |
ACTGCTCGGCCCATATGATT+TGG | + | chr5.4:50314103-50314122 | MS.gene050083:CDS | 50.0% | |
AGCAGCAGCCATGAATCCAA+GGG | - | chr5.4:50313962-50313981 | None:intergenic | 50.0% | |
ATCTCGAGATGAACTCCTCC+TGG | - | chr5.4:50315498-50315517 | None:intergenic | 50.0% | |
CAACTCGGTTAGCAAGCTCA+CGG | - | chr5.4:50313933-50313952 | None:intergenic | 50.0% | |
CACCAGCAAACACAATCGGT+GGG | - | chr5.4:50312070-50312089 | None:intergenic | 50.0% | |
CAGCCTCCTCTTGAATCTAC+TGG | + | chr5.4:50315684-50315703 | MS.gene050083:CDS | 50.0% | |
CCAAATGGACCATTGACAGC+TGG | + | chr5.4:50311964-50311983 | MS.gene050083:CDS | 50.0% | |
CCAGCTGTCAATGGTCCATT+TGG | - | chr5.4:50311967-50311986 | None:intergenic | 50.0% | |
CTGCTCGGCCCATATGATTT+GGG | + | chr5.4:50314104-50314123 | MS.gene050083:CDS | 50.0% | |
CTTTGACCCACCAATGCACT+CGG | - | chr5.4:50315538-50315557 | None:intergenic | 50.0% | |
CTTTGGCAATCTTTGCGCCT+CGG | + | chr5.4:50315066-50315085 | MS.gene050083:intron | 50.0% | |
GAGACACTCTCAAAAGGCTG+TGG | - | chr5.4:50313235-50313254 | None:intergenic | 50.0% | |
GAGACCACATGGAGCCTTTA+TGG | - | chr5.4:50314539-50314558 | None:intergenic | 50.0% | |
GCAAAAGGGCCACTTGTAGT+AGG | + | chr5.4:50314920-50314939 | MS.gene050083:intron | 50.0% | |
GCATTTGGGTGAAGCTGCTA+TGG | + | chr5.4:50312109-50312128 | MS.gene050083:CDS | 50.0% | |
GCTGTCAATGGTCCATTTGG+TGG | - | chr5.4:50311964-50311983 | None:intergenic | 50.0% | |
GGAGTTCATCTCGAGATGAC+AGG | + | chr5.4:50315501-50315520 | MS.gene050083:CDS | 50.0% | |
GTATGTGAGCTGGTCCATGA+TGG | + | chr5.4:50314841-50314860 | MS.gene050083:intron | 50.0% | |
GTATGTGTAGGTGGGGAGAA+TGG | + | chr5.4:50312604-50312623 | MS.gene050083:intron | 50.0% | |
GTGGTTATGCTGCTATGCAG+AGG | + | chr5.4:50312819-50312838 | MS.gene050083:CDS | 50.0% | |
TCACCAGCAAACACAATCGG+TGG | - | chr5.4:50312071-50312090 | None:intergenic | 50.0% | |
TCTCGAGATGAACTCCTCCT+GGG | - | chr5.4:50315497-50315516 | None:intergenic | 50.0% | |
TGGAGTGGTAGGTGGCAAAA+GGG | + | chr5.4:50314906-50314925 | MS.gene050083:intron | 50.0% | |
TTGGAGTGGTAGGTGGCAAA+AGG | + | chr5.4:50314905-50314924 | MS.gene050083:intron | 50.0% | |
TTTGCAATGGCTGCAGCTGT+TGG | + | chr5.4:50313734-50313753 | MS.gene050083:intron | 50.0% | |
TTTGGAGGGAATGAGAGAGG+TGG | - | chr5.4:50311763-50311782 | None:intergenic | 50.0% | |
! | ACATACCCTGATGGCATCGA+AGG | - | chr5.4:50314572-50314591 | None:intergenic | 50.0% |
! | AGTTTGGTAGCCCACCATCA+TGG | - | chr5.4:50314858-50314877 | None:intergenic | 50.0% |
! | ATACCCTGATGGCATCGAAG+GGG | - | chr5.4:50314570-50314589 | None:intergenic | 50.0% |
! | ATGGGGAATGAAGGTGGGTT+TGG | - | chr5.4:50311807-50311826 | None:intergenic | 50.0% |
! | ATGTGACCGAGTGCATTGGT+GGG | + | chr5.4:50315529-50315548 | MS.gene050083:CDS | 50.0% |
! | ATTTGGTGGATGCATTGCGG+GGG | - | chr5.4:50311950-50311969 | None:intergenic | 50.0% |
! | CATACCCTGATGGCATCGAA+GGG | - | chr5.4:50314571-50314590 | None:intergenic | 50.0% |
! | CATTTGGTGGATGCATTGCG+GGG | - | chr5.4:50311951-50311970 | None:intergenic | 50.0% |
! | CCATTTGGTGGATGCATTGC+GGG | - | chr5.4:50311952-50311971 | None:intergenic | 50.0% |
! | CGAATCATCCTCTGAGGATC+CGG | - | chr5.4:50312746-50312765 | None:intergenic | 50.0% |
! | CTCAGAGCTTTTGCTACTGG+TGG | + | chr5.4:50312800-50312819 | MS.gene050083:CDS | 50.0% |
! | TCGGCCCATATGATTTGGGT+CGG | + | chr5.4:50314108-50314127 | MS.gene050083:CDS | 50.0% |
! | TTCCCACCGATTGTGTTTGC+TGG | + | chr5.4:50312065-50312084 | MS.gene050083:CDS | 50.0% |
!! | GTTGGTTGAGGTTTGGTGGT+GGG | - | chr5.4:50311921-50311940 | None:intergenic | 50.0% |
!! | TGGTGGGCTACCAAACTTCA+AGG | + | chr5.4:50314861-50314880 | MS.gene050083:intron | 50.0% |
!!! | AGGTTTGGTGGTGGGCTTTT+CGG | - | chr5.4:50311913-50311932 | None:intergenic | 50.0% |
!!! | GTGATGACCGGGTTTTTTGC+TGG | - | chr5.4:50311891-50311910 | None:intergenic | 50.0% |
ACCCACCTTCATTCCCCATC+GGG | + | chr5.4:50311808-50311827 | MS.gene050083:CDS | 55.0% | |
ATCCAAGGGCCTCGTCAACT+CGG | - | chr5.4:50313948-50313967 | None:intergenic | 55.0% | |
CAGCAGCAGCCATGAATCCA+AGG | - | chr5.4:50313963-50313982 | None:intergenic | 55.0% | |
CCCATGCCCAAAACCAAACC+CGG | + | chr5.4:50311837-50311856 | MS.gene050083:CDS | 55.0% | |
CCCGCAATGCATCCACCAAA+TGG | + | chr5.4:50311949-50311968 | MS.gene050083:CDS | 55.0% | |
CGCACTGCCCTGATTAGATG+TGG | - | chr5.4:50314466-50314485 | None:intergenic | 55.0% | |
CTTGGATTCATGGCTGCTGC+TGG | + | chr5.4:50313961-50313980 | MS.gene050083:CDS | 55.0% | |
GAACAAGAAGGAAGCCACCC+AGG | + | chr5.4:50315477-50315496 | MS.gene050083:CDS | 55.0% | |
GTGAGCTGGTCCATGATGGT+GGG | + | chr5.4:50314845-50314864 | MS.gene050083:intron | 55.0% | |
GTTAACAGCTGCAGAGCCGT+TGG | - | chr5.4:50313800-50313819 | None:intergenic | 55.0% | |
TGACGAGGCCCTTGGATTCA+TGG | + | chr5.4:50313951-50313970 | MS.gene050083:CDS | 55.0% | |
TGGGTCAGCGATCCTATGCA+TGG | + | chr5.4:50314508-50314527 | MS.gene050083:CDS | 55.0% | |
TGTGAGCTGGTCCATGATGG+TGG | + | chr5.4:50314844-50314863 | MS.gene050083:intron | 55.0% | |
TGTGTAGGTGGGGAGAATGG+CGG | + | chr5.4:50312607-50312626 | MS.gene050083:intron | 55.0% | |
TTGAGCCCGATGGGGAATGA+AGG | - | chr5.4:50311816-50311835 | None:intergenic | 55.0% | |
TTTGGGTCGGTGAAAGGACC+CGG | + | chr5.4:50314121-50314140 | MS.gene050083:CDS | 55.0% | |
! | GACGGTGGTTGGTTGAGGTT+TGG | - | chr5.4:50311928-50311947 | None:intergenic | 55.0% |
! | GCTTGCTAACCGAGTTGACG+AGG | + | chr5.4:50313936-50313955 | MS.gene050083:CDS | 55.0% |
! | GGTGGTTGGTTGAGGTTTGG+TGG | - | chr5.4:50311925-50311944 | None:intergenic | 55.0% |
! | GTCTAGGATCGCAGTGTGTG+TGG | - | chr5.4:50315593-50315612 | None:intergenic | 55.0% |
! | GTGGGCTTTTCGGTGATGAC+CGG | - | chr5.4:50311903-50311922 | None:intergenic | 55.0% |
! | TGGGCTTTTCGGTGATGACC+GGG | - | chr5.4:50311902-50311921 | None:intergenic | 55.0% |
!! | GGTTGGTTGAGGTTTGGTGG+TGG | - | chr5.4:50311922-50311941 | None:intergenic | 55.0% |
!!! | ACCGGGTTTGGTTTTGGGCA+TGG | - | chr5.4:50311841-50311860 | None:intergenic | 55.0% |
!!! | CCGGGTTTGGTTTTGGGCAT+GGG | - | chr5.4:50311840-50311859 | None:intergenic | 55.0% |
!!! | GACCGGGTTTTTTGCTGGCT+CGG | - | chr5.4:50311886-50311905 | None:intergenic | 55.0% |
!!! | GGGCGAGTTTTGAGACCACA+TGG | - | chr5.4:50314550-50314569 | None:intergenic | 55.0% |
AGCCCGATGGGGAATGAAGG+TGG | - | chr5.4:50311813-50311832 | None:intergenic | 60.0% | |
ATCAGGGCAGTGCGTAGAGC+AGG | + | chr5.4:50314472-50314491 | MS.gene050083:CDS | 60.0% | |
ATGGGCACCATCTAGCTGCC+GGG | - | chr5.4:50314142-50314161 | None:intergenic | 60.0% | |
CAAGAAGGAAGCCACCCAGG+AGG | + | chr5.4:50315480-50315499 | MS.gene050083:CDS | 60.0% | |
CATGGGCACCATCTAGCTGC+CGG | - | chr5.4:50314143-50314162 | None:intergenic | 60.0% | |
CGAGATGAACTCCTCCTGGG+TGG | - | chr5.4:50315494-50315513 | None:intergenic | 60.0% | |
CGCCGAGCCAGCAAAAAACC+CGG | + | chr5.4:50311881-50311900 | MS.gene050083:CDS | 60.0% | |
GAAAGGACCCGGCAGCTAGA+TGG | + | chr5.4:50314132-50314151 | MS.gene050083:CDS | 60.0% | |
GCAGCTAGATGGTGCCCATG+TGG | + | chr5.4:50314143-50314162 | MS.gene050083:CDS | 60.0% | |
GCATGGGTTTGAGCCCGATG+GGG | - | chr5.4:50311824-50311843 | None:intergenic | 60.0% | |
GCCCGATGGGGAATGAAGGT+GGG | - | chr5.4:50311812-50311831 | None:intergenic | 60.0% | |
GGCATGGGTTTGAGCCCGAT+GGG | - | chr5.4:50311825-50311844 | None:intergenic | 60.0% | |
GGCGAGGATTGAACCGGGTT+TGG | - | chr5.4:50311853-50311872 | None:intergenic | 60.0% | |
GTGGACGGCGAGGATTGAAC+CGG | - | chr5.4:50311859-50311878 | None:intergenic | 60.0% | |
GTGTAGGTGGGGAGAATGGC+GGG | + | chr5.4:50312608-50312627 | MS.gene050083:intron | 60.0% | |
TCGCCCCTTCGATGCCATCA+GGG | + | chr5.4:50314564-50314583 | MS.gene050083:CDS | 60.0% | |
TGGACGGCGAGGATTGAACC+GGG | - | chr5.4:50311858-50311877 | None:intergenic | 60.0% | |
! | AACCGAGTTGACGAGGCCCT+TGG | + | chr5.4:50313943-50313962 | MS.gene050083:CDS | 60.0% |
!!! | CGGGTTTTTTGCTGGCTCGG+CGG | - | chr5.4:50311883-50311902 | None:intergenic | 60.0% |
CCAGGACACCGGATCCTCAG+AGG | + | chr5.4:50312735-50312754 | MS.gene050083:CDS | 65.0% | |
CTCGCCCCTTCGATGCCATC+AGG | + | chr5.4:50314563-50314582 | MS.gene050083:CDS | 65.0% | |
GGGCATGGGTTTGAGCCCGA+TGG | - | chr5.4:50311826-50311845 | None:intergenic | 65.0% | |
GGTGGATGCATTGCGGGGGA+CGG | - | chr5.4:50311946-50311965 | None:intergenic | 65.0% | |
! | CCTCTGAGGATCCGGTGTCC+TGG | - | chr5.4:50312738-50312757 | None:intergenic | 65.0% |
!!! | TTTTTGCTGGCTCGGCGGCG+TGG | - | chr5.4:50311878-50311897 | None:intergenic | 65.0% |
GCATTGCGGGGGACGGTGGT+TGG | - | chr5.4:50311939-50311958 | None:intergenic | 70.0% | |
GGATGCATTGCGGGGGACGG+TGG | - | chr5.4:50311943-50311962 | None:intergenic | 70.0% | |
! | CGGGGGACGGTGGTTGGTTG+AGG | - | chr5.4:50311933-50311952 | None:intergenic | 70.0% |
!! | TGCTGGCTCGGCGGCGTGGA+CGG | - | chr5.4:50311874-50311893 | None:intergenic | 75.0% |
! | GCTCGGCGGCGTGGACGGCG+AGG | - | chr5.4:50311869-50311888 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 50311738 | 50315713 | 50311738 | ID=MS.gene050083 |
chr5.4 | mRNA | 50311738 | 50315713 | 50311738 | ID=MS.gene050083.t1;Parent=MS.gene050083 |
chr5.4 | exon | 50311738 | 50312271 | 50311738 | ID=MS.gene050083.t1.exon1;Parent=MS.gene050083.t1 |
chr5.4 | CDS | 50311738 | 50312271 | 50311738 | ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1 |
chr5.4 | exon | 50312614 | 50312891 | 50312614 | ID=MS.gene050083.t1.exon2;Parent=MS.gene050083.t1 |
chr5.4 | CDS | 50312614 | 50312891 | 50312614 | ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1 |
chr5.4 | exon | 50313927 | 50314203 | 50313927 | ID=MS.gene050083.t1.exon3;Parent=MS.gene050083.t1 |
chr5.4 | CDS | 50313927 | 50314203 | 50313927 | ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1 |
chr5.4 | exon | 50314340 | 50314585 | 50314340 | ID=MS.gene050083.t1.exon4;Parent=MS.gene050083.t1 |
chr5.4 | CDS | 50314340 | 50314585 | 50314340 | ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1 |
chr5.4 | exon | 50315447 | 50315713 | 50315447 | ID=MS.gene050083.t1.exon5;Parent=MS.gene050083.t1 |
chr5.4 | CDS | 50315447 | 50315713 | 50315447 | ID=cds.MS.gene050083.t1;Parent=MS.gene050083.t1 |
Gene Sequence |
Protein sequence |