Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057494.t1 | XP_003621403.1 | 100 | 480 | 0 | 0 | 1 | 480 | 1 | 480 | 3.60E-278 | 966.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057494.t1 | Q96558 | 95.4 | 480 | 22 | 0 | 1 | 480 | 1 | 480 | 8.1e-271 | 933.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057494.t1 | G7L571 | 100.0 | 480 | 0 | 0 | 1 | 480 | 1 | 480 | 2.6e-278 | 966.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057081 | MS.gene057494 | 0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene057494 | MS.gene057768 | 0.821388 | 4.15E-53 | -1.69E-46 |
| MS.gene057494 | MS.gene23184 | 0.816634 | 5.00E-52 | -1.69E-46 |
| MS.gene057494 | MS.gene23185 | 0.823065 | 1.69E-53 | -1.69E-46 |
| MS.gene057494 | MS.gene23404 | 0.82201 | 2.98E-53 | -1.69E-46 |
| MS.gene057494 | MS.gene23588 | 0.802744 | 4.85E-49 | -1.69E-46 |
| MS.gene057494 | MS.gene38615 | 0.803327 | 3.68E-49 | -1.69E-46 |
| MS.gene057494 | MS.gene40846 | 0.804713 | 1.89E-49 | -1.69E-46 |
| MS.gene057494 | MS.gene54667 | 0.807115 | 5.92E-50 | -1.69E-46 |
| MS.gene057494 | MS.gene57085 | 0.809745 | 1.63E-50 | -1.69E-46 |
| MS.gene057494 | MS.gene58786 | 0.800251 | 1.57E-48 | -1.69E-46 |
| MS.gene057494 | MS.gene69635 | 0.825882 | 3.68E-54 | -1.69E-46 |
| MS.gene057494 | MS.gene71758 | 0.809835 | 1.56E-50 | -1.69E-46 |
| MS.gene057494 | MS.gene73439 | 0.801109 | 1.05E-48 | -1.69E-46 |
| MS.gene057494 | MS.gene97558 | 0.821844 | 3.25E-53 | -1.69E-46 |
| MS.gene057494 | MS.gene99043 | 0.810292 | 1.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057494.t1 | MTR_7g012950 | 100.000 | 480 | 0 | 0 | 1 | 480 | 1 | 480 | 0.0 | 993 |
| MS.gene057494.t1 | MTR_5g043970 | 87.110 | 481 | 61 | 1 | 1 | 480 | 1 | 481 | 0.0 | 887 |
| MS.gene057494.t1 | MTR_4g082990 | 83.333 | 480 | 80 | 0 | 1 | 480 | 1 | 480 | 0.0 | 850 |
| MS.gene057494.t1 | MTR_4g109360 | 75.476 | 473 | 114 | 2 | 3 | 473 | 4 | 476 | 0.0 | 759 |
| MS.gene057494.t1 | MTR_6g014890 | 61.165 | 103 | 38 | 1 | 12 | 114 | 16 | 116 | 1.38e-34 | 127 |
| MS.gene057494.t1 | MTR_6g014930 | 56.436 | 101 | 21 | 2 | 17 | 117 | 1 | 78 | 3.73e-25 | 99.0 |
| MS.gene057494.t1 | MTR_6g033430 | 72.222 | 72 | 20 | 0 | 64 | 135 | 1 | 72 | 2.15e-24 | 96.7 |
| MS.gene057494.t1 | MTR_6g014530 | 44.961 | 129 | 37 | 2 | 14 | 142 | 8 | 102 | 7.30e-24 | 96.3 |
| MS.gene057494.t1 | MTR_6g014840 | 57.471 | 87 | 28 | 1 | 1 | 87 | 1 | 78 | 3.50e-23 | 93.6 |
| MS.gene057494.t1 | MTR_6g014870 | 54.945 | 91 | 18 | 1 | 49 | 139 | 16 | 83 | 8.52e-21 | 89.0 |
| MS.gene057494.t1 | MTR_6g014850 | 36.813 | 182 | 54 | 6 | 174 | 348 | 71 | 198 | 4.12e-18 | 83.6 |
| MS.gene057494.t1 | MTR_6g014850 | 48.039 | 102 | 26 | 2 | 1 | 102 | 1 | 75 | 6.99e-17 | 80.1 |
| MS.gene057494.t1 | MTR_6g014820 | 46.739 | 92 | 13 | 1 | 1 | 92 | 23 | 78 | 7.98e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057494.t1 | AT3G29360 | 91.458 | 480 | 41 | 0 | 1 | 480 | 1 | 480 | 0.0 | 926 |
| MS.gene057494.t1 | AT3G29360 | 91.458 | 480 | 41 | 0 | 1 | 480 | 1 | 480 | 0.0 | 926 |
| MS.gene057494.t1 | AT5G15490 | 90.833 | 480 | 44 | 0 | 1 | 480 | 1 | 480 | 0.0 | 918 |
| MS.gene057494.t1 | AT5G39320 | 89.958 | 478 | 48 | 0 | 1 | 478 | 1 | 478 | 0.0 | 909 |
| MS.gene057494.t1 | AT1G26570 | 84.407 | 481 | 74 | 1 | 1 | 480 | 1 | 481 | 0.0 | 858 |
| MS.gene057494.t1 | AT3G01010 | 83.436 | 163 | 22 | 2 | 318 | 480 | 1 | 158 | 5.50e-97 | 289 |
Find 120 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAGCAGATTTGACTTAT+TGG | 0.244863 | 7.2:+84548420 | MS.gene057494:CDS |
| TTCACAGTTGTTGGACTCAT+TGG | 0.269285 | 7.2:-84549295 | None:intergenic |
| CTCACTTTCTTCACAGTTGT+TGG | 0.276565 | 7.2:-84549304 | None:intergenic |
| TGGATAGATCCCTCTGGATT+TGG | 0.283487 | 7.2:-84549234 | None:intergenic |
| AATCCGGACCGTGTTCTTAT+TGG | 0.290407 | 7.2:+84548632 | MS.gene057494:CDS |
| GTTCCCTCAGCAAGGAATTC+CGG | 0.290654 | 7.2:-84548590 | None:intergenic |
| AGCAGCAGATTTGACTTATT+GGG | 0.299764 | 7.2:+84548421 | MS.gene057494:CDS |
| GGTTTCATTGTTTACTCAAT+TGG | 0.314253 | 7.2:+84549499 | MS.gene057494:CDS |
| CTTAACGCTAGTGTCGGTTT+TGG | 0.319151 | 7.2:+84548908 | MS.gene057494:CDS |
| AGTCAAATCTGCTGCTTTGC+CGG | 0.327091 | 7.2:-84548414 | None:intergenic |
| TATCCATGAACAAGTTTGAT+TGG | 0.332354 | 7.2:+84549251 | MS.gene057494:CDS |
| TGGAAGGGTGTCACTGTTCC+AGG | 0.345471 | 7.2:-84548246 | None:intergenic |
| ACTGTTCCAGGCTGCAATGC+GGG | 0.355570 | 7.2:-84548234 | None:intergenic |
| CGAAATCCTCTGAGCCAAAA+AGG | 0.362463 | 7.2:-84548786 | None:intergenic |
| TTCCTGAGGTTGCAGAATAC+TGG | 0.365060 | 7.2:+84548990 | MS.gene057494:CDS |
| ATTCCGGGTTTGATAGAATC+TGG | 0.368775 | 7.2:-84548574 | None:intergenic |
| TTCCCTCAGCAAGGAATTCC+GGG | 0.378588 | 7.2:-84548589 | None:intergenic |
| AGATACTAACCACAAATCTT+TGG | 0.407402 | 7.2:+84548732 | MS.gene057494:CDS |
| CAACTACACGGTTCACAAAA+CGG | 0.410241 | 7.2:-84549048 | None:intergenic |
| GACACTAGCGTTAAGGAACT+TGG | 0.418129 | 7.2:-84548900 | None:intergenic |
| CAAGGTTCAAGATATCCTTC+TGG | 0.418226 | 7.2:-84548943 | None:intergenic |
| GCTGAGAAGTTACGTGAGAT+TGG | 0.419372 | 7.2:+84549478 | MS.gene057494:CDS |
| TGAAGAGTGTTTATGCTCAC+TGG | 0.422588 | 7.2:+84548696 | MS.gene057494:CDS |
| GTCCCAATCAAACTTGTTCA+TGG | 0.427996 | 7.2:-84549254 | None:intergenic |
| TTTGGTCCTCGGTAACTTGT+GGG | 0.434652 | 7.2:-84549216 | None:intergenic |
| TCAGCACTTTGCGAGGCAAC+CGG | 0.440606 | 7.2:+84548824 | MS.gene057494:CDS |
| CTCAGCAGACCAAAGATTTG+TGG | 0.441168 | 7.2:-84548741 | None:intergenic |
| CAAAACCGACACTAGCGTTA+AGG | 0.442710 | 7.2:-84548907 | None:intergenic |
| TGAAGAAAGTGAGTGTGGTT+TGG | 0.443618 | 7.2:+84549314 | MS.gene057494:CDS |
| AAGATTTGCTGCATTGGTGC+TGG | 0.447077 | 7.2:+84548131 | MS.gene057494:CDS |
| ATCCATGAACAAGTTTGATT+GGG | 0.448775 | 7.2:+84549252 | MS.gene057494:CDS |
| GAAGAAAGTGAGTGTGGTTT+GGG | 0.451541 | 7.2:+84549315 | MS.gene057494:CDS |
| TCAAGGCCAGGTTCATAGAT+TGG | 0.464203 | 7.2:-84548266 | None:intergenic |
| ACCGTGTTCTTATTGGAGGC+AGG | 0.464804 | 7.2:+84548639 | MS.gene057494:CDS |
| ATCCCTCTGGATTTGGTCCT+CGG | 0.465116 | 7.2:-84549227 | None:intergenic |
| AGTGCAATGACTGCCATTGT+TGG | 0.474498 | 7.2:-84548167 | None:intergenic |
| TTACTCAATTGGAAAACCAT+TGG | 0.475272 | 7.2:+84549510 | MS.gene057494:CDS |
| CTCATTGGCTGCAAGTGGAT+TGG | 0.475733 | 7.2:-84549280 | None:intergenic |
| CCGGACCGTGTTCTTATTGG+AGG | 0.477174 | 7.2:+84548635 | MS.gene057494:CDS |
| CAACATCTGTGCTGAAGAAG+AGG | 0.478588 | 7.2:-84548319 | None:intergenic |
| ATTTGGTCCTCGGTAACTTG+TGG | 0.482296 | 7.2:-84549217 | None:intergenic |
| CTTTATCGCCGAGTAGCCCT+TGG | 0.484533 | 7.2:-84549174 | None:intergenic |
| TGTTGAAAAGCATGTCTTTG+AGG | 0.486060 | 7.2:+84548337 | MS.gene057494:CDS |
| TTCCAGTATTCTGCAACCTC+AGG | 0.488676 | 7.2:-84548992 | None:intergenic |
| GTCGGCACTGACTCAAGGAT+TGG | 0.493453 | 7.2:+84548875 | MS.gene057494:CDS |
| GTGGTTAGTATCTGCTCCTC+GGG | 0.496401 | 7.2:-84548722 | None:intergenic |
| TAACACCCCAACTAAAACTC+AGG | 0.498878 | 7.2:+84548382 | MS.gene057494:CDS |
| GTATCTGCATTCTGACTGAA+TGG | 0.500895 | 7.2:+84549368 | MS.gene057494:CDS |
| TGTGGTTAGTATCTGCTCCT+CGG | 0.501604 | 7.2:-84548723 | None:intergenic |
| AGGAGTCTCCCTTGTGTCAC+CGG | 0.503396 | 7.2:-84549137 | None:intergenic |
| AAAACTCAGGGTCTTGGTGC+CGG | 0.510086 | 7.2:+84548395 | MS.gene057494:CDS |
| GTCGACAACAGCCACTTCAA+TGG | 0.519962 | 7.2:-84548201 | None:intergenic |
| TTGGAAAACCATTGGATGCA+TGG | 0.520140 | 7.2:+84549518 | MS.gene057494:CDS |
| TTGGACTCATTGGCTGCAAG+TGG | 0.522664 | 7.2:-84549285 | None:intergenic |
| GGCCAGGTTCATAGATTGGA+AGG | 0.531980 | 7.2:-84548262 | None:intergenic |
| TAGCCCTTGGCAAACATCAA+TGG | 0.532703 | 7.2:-84549161 | None:intergenic |
| GAAGAGTGTTTATGCTCACT+GGG | 0.534298 | 7.2:+84548697 | MS.gene057494:CDS |
| CCTGCCATTGATGTTTGCCA+AGG | 0.535085 | 7.2:+84549157 | MS.gene057494:CDS |
| TGTTCATGGATAGATCCCTC+TGG | 0.540616 | 7.2:-84549240 | None:intergenic |
| CTAAACCCCGCATTGCAGCC+TGG | 0.548047 | 7.2:+84548228 | MS.gene057494:CDS |
| TCCTTGAGCCATGCATCCAA+TGG | 0.549377 | 7.2:-84549526 | None:intergenic |
| TGGGTCGAATATGCTTATGT+TGG | 0.549577 | 7.2:-84549197 | None:intergenic |
| CCGTGTTCTTATTGGAGGCA+GGG | 0.551450 | 7.2:+84548640 | MS.gene057494:CDS |
| ATGGTGAAGATTTGCTGCAT+TGG | 0.551855 | 7.2:+84548125 | MS.gene057494:CDS |
| CCTTGGCAAACATCAATGGC+AGG | 0.551877 | 7.2:-84549157 | None:intergenic |
| TGGTGGATCTTGCTTCCAGA+AGG | 0.555042 | 7.2:+84548928 | MS.gene057494:CDS |
| TTCGCATTCAAGAAAGATAC+CGG | 0.556970 | 7.2:+84549118 | MS.gene057494:CDS |
| CCAACTAAAACTCAGGGTCT+TGG | 0.557034 | 7.2:+84548389 | MS.gene057494:CDS |
| GATGTTTGCCAAGGGCTACT+CGG | 0.558346 | 7.2:+84549166 | MS.gene057494:CDS |
| CACTTGTTGAATGTTTGCAC+CGG | 0.560696 | 7.2:-84548843 | None:intergenic |
| ATGCTGTCGGCACTGACTCA+AGG | 0.561093 | 7.2:+84548870 | MS.gene057494:CDS |
| TGCATTGGTGCTGGATATGT+CGG | 0.561538 | 7.2:+84548140 | MS.gene057494:CDS |
| TTTACAACATCGTCAAGGCC+AGG | 0.562538 | 7.2:-84548278 | None:intergenic |
| CTGTTCCAGGCTGCAATGCG+GGG | 0.564023 | 7.2:-84548233 | None:intergenic |
| TCAAGACACTTGATTATCAG+AGG | 0.564119 | 7.2:+84549398 | MS.gene057494:CDS |
| ACCATTGGATGCATGGCTCA+AGG | 0.567026 | 7.2:+84549525 | MS.gene057494:CDS |
| CCTCCAATAAGAACACGGTC+CGG | 0.568819 | 7.2:-84548635 | None:intergenic |
| TGAGTCAGTGCCGACAGCAT+AGG | 0.569368 | 7.2:-84548867 | None:intergenic |
| ACCCTTCCAATCTATGAACC+TGG | 0.569593 | 7.2:+84548260 | MS.gene057494:CDS |
| CACTGTTCCAGGCTGCAATG+CGG | 0.572759 | 7.2:-84548235 | None:intergenic |
| AGAAAGATACCGGTGACACA+AGG | 0.573409 | 7.2:+84549128 | MS.gene057494:CDS |
| TTTGTCAGACTTTGAGACAT+CGG | 0.579194 | 7.2:-84548465 | None:intergenic |
| CAACAAGTGGCCTATGCTGT+CGG | 0.580264 | 7.2:+84548857 | MS.gene057494:CDS |
| TGCAATGTCAGCACTTTGCG+AGG | 0.585037 | 7.2:+84548817 | MS.gene057494:CDS |
| TTGGCTGCAAGTGGATTGGA+TGG | 0.586131 | 7.2:-84549276 | None:intergenic |
| CGAGTGCAACGGCCTTCCTG+AGG | 0.586491 | 7.2:+84548976 | MS.gene057494:CDS |
| ACAACAGCCACTTCAATGGA+TGG | 0.588532 | 7.2:-84548197 | None:intergenic |
| TATCTGCATTCTGACTGAAT+GGG | 0.596014 | 7.2:+84549369 | MS.gene057494:CDS |
| CTGCCATTGATGTTTGCCAA+GGG | 0.597889 | 7.2:+84549158 | MS.gene057494:CDS |
| AAGTTCCTTAACGCTAGTGT+CGG | 0.598964 | 7.2:+84548902 | MS.gene057494:CDS |
| AACCCGGAATTCCTTGCTGA+GGG | 0.599051 | 7.2:+84548587 | MS.gene057494:CDS |
| CGGTGCAAACATTCAACAAG+TGG | 0.601557 | 7.2:+84548844 | MS.gene057494:CDS |
| GTCTACATCTGCGAGTGCAA+CGG | 0.601622 | 7.2:+84548965 | MS.gene057494:CDS |
| TAAGTGTCCATCCATTGAAG+TGG | 0.605836 | 7.2:+84548190 | MS.gene057494:CDS |
| TTATGCTCACTGGGTTCCCG+AGG | 0.611107 | 7.2:+84548706 | MS.gene057494:CDS |
| ATTCCAGATTCTATCAAACC+CGG | 0.620754 | 7.2:+84548571 | MS.gene057494:CDS |
| ACACTAGCGTTAAGGAACTT+GGG | 0.622226 | 7.2:-84548899 | None:intergenic |
| CCCTGCCTCCAATAAGAACA+CGG | 0.625522 | 7.2:-84548640 | None:intergenic |
| AAACCCGGAATTCCTTGCTG+AGG | 0.626241 | 7.2:+84548586 | MS.gene057494:CDS |
| TGAAGAAGAGGTTCTTGCCA+CGG | 0.630240 | 7.2:-84548307 | None:intergenic |
| AACACCCCAACTAAAACTCA+GGG | 0.634113 | 7.2:+84548383 | MS.gene057494:CDS |
| TGTTCCTGTCAAAACTGCTG+AGG | 0.636569 | 7.2:+84548508 | MS.gene057494:CDS |
| TGATTGCGGTTCCCTCAGCA+AGG | 0.637397 | 7.2:-84548598 | None:intergenic |
| GGAGGCAGGGAAACCCCTGA+AGG | 0.651550 | 7.2:+84548653 | MS.gene057494:CDS |
| AGTATTCTGCAACCTCAGGA+AGG | 0.651827 | 7.2:-84548988 | None:intergenic |
| TGAACATAGACGCAACTACA+CGG | 0.656125 | 7.2:-84549060 | None:intergenic |
| ATATGTCGGTGGTCCAACAA+TGG | 0.658539 | 7.2:+84548154 | MS.gene057494:CDS |
| TACCGAGGACCAAATCCAGA+GGG | 0.661300 | 7.2:+84549225 | MS.gene057494:CDS |
| GCCAGGTTCATAGATTGGAA+GGG | 0.662860 | 7.2:-84548261 | None:intergenic |
| GAAAGATACCGGTGACACAA+GGG | 0.663967 | 7.2:+84549129 | MS.gene057494:CDS |
| ATTGCTTTACAACATCGTCA+AGG | 0.664980 | 7.2:-84548283 | None:intergenic |
| AACTGTGAAGAAAGTGAGTG+TGG | 0.665071 | 7.2:+84549309 | MS.gene057494:CDS |
| GCTCAAGGATATGCCAGCTG+TGG | 0.666287 | 7.2:+84549540 | MS.gene057494:CDS |
| TGCACTCGCAGATGTAGACA+AGG | 0.669616 | 7.2:-84548961 | None:intergenic |
| AGTTGCGTCTATGTTCAACA+CGG | 0.689968 | 7.2:+84549066 | MS.gene057494:CDS |
| ATTGGTGCTGGATATGTCGG+TGG | 0.703962 | 7.2:+84548143 | MS.gene057494:CDS |
| GAAGCAACAAAAGATGCACA+TGG | 0.706553 | 7.2:+84549346 | MS.gene057494:CDS |
| ATTCGACCCACAAGTTACCG+AGG | 0.712173 | 7.2:+84549210 | MS.gene057494:CDS |
| TTACCGAGGACCAAATCCAG+AGG | 0.725401 | 7.2:+84549224 | MS.gene057494:CDS |
| GATGTTGTAAAGCAATGCCG+TGG | 0.754742 | 7.2:+84548290 | MS.gene057494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATTAAAAAGATCTCTGATTG+CGG | - | chr7.2:84548615-84548634 | None:intergenic | 25.0% |
| !! | AATCAGAGATCTTTTTAATC+CGG | + | chr7.2:84548616-84548635 | MS.gene057494:CDS | 25.0% |
| AACAAAAAGATCGCTATTCT+TGG | + | chr7.2:84549094-84549113 | MS.gene057494:CDS | 30.0% | |
| AGATACTAACCACAAATCTT+TGG | + | chr7.2:84548732-84548751 | MS.gene057494:CDS | 30.0% | |
| ATCCATGAACAAGTTTGATT+GGG | + | chr7.2:84549252-84549271 | MS.gene057494:CDS | 30.0% | |
| GGTTTCATTGTTTACTCAAT+TGG | + | chr7.2:84549499-84549518 | MS.gene057494:CDS | 30.0% | |
| TATCCATGAACAAGTTTGAT+TGG | + | chr7.2:84549251-84549270 | MS.gene057494:CDS | 30.0% | |
| TTACTCAATTGGAAAACCAT+TGG | + | chr7.2:84549510-84549529 | MS.gene057494:CDS | 30.0% | |
| !!! | AAACCAGCATTTGTTTTTGA+TGG | + | chr7.2:84549439-84549458 | MS.gene057494:CDS | 30.0% |
| !!! | AATTTTGACTCACAATAGCA+AGG | + | chr7.2:84548541-84548560 | MS.gene057494:CDS | 30.0% |
| !!! | ATTTTGACTCACAATAGCAA+GGG | + | chr7.2:84548542-84548561 | MS.gene057494:CDS | 30.0% |
| ATTCCAGATTCTATCAAACC+CGG | + | chr7.2:84548571-84548590 | MS.gene057494:CDS | 35.0% | |
| ATTGCTTTACAACATCGTCA+AGG | - | chr7.2:84548286-84548305 | None:intergenic | 35.0% | |
| CTTCCATCAAAAACAAATGC+TGG | - | chr7.2:84549445-84549464 | None:intergenic | 35.0% | |
| TATCTGCATTCTGACTGAAT+GGG | + | chr7.2:84549369-84549388 | MS.gene057494:CDS | 35.0% | |
| TCAAGACACTTGATTATCAG+AGG | + | chr7.2:84549398-84549417 | MS.gene057494:CDS | 35.0% | |
| TTCGCATTCAAGAAAGATAC+CGG | + | chr7.2:84549118-84549137 | MS.gene057494:CDS | 35.0% | |
| ! | AAGCAGCAGATTTGACTTAT+TGG | + | chr7.2:84548420-84548439 | MS.gene057494:CDS | 35.0% |
| ! | AGCAGCAGATTTGACTTATT+GGG | + | chr7.2:84548421-84548440 | MS.gene057494:CDS | 35.0% |
| ! | TGTTGAAAAGCATGTCTTTG+AGG | + | chr7.2:84548337-84548356 | MS.gene057494:CDS | 35.0% |
| !! | TTTGTCAGACTTTGAGACAT+CGG | - | chr7.2:84548468-84548487 | None:intergenic | 35.0% |
| !!! | CAGCATTTGTTTTTGATGGA+AGG | + | chr7.2:84549443-84549462 | MS.gene057494:CDS | 35.0% |
| AACACCCCAACTAAAACTCA+GGG | + | chr7.2:84548383-84548402 | MS.gene057494:CDS | 40.0% | |
| AACTGTGAAGAAAGTGAGTG+TGG | + | chr7.2:84549309-84549328 | MS.gene057494:CDS | 40.0% | |
| AAGTTCCTTAACGCTAGTGT+CGG | + | chr7.2:84548902-84548921 | MS.gene057494:CDS | 40.0% | |
| ACACTAGCGTTAAGGAACTT+GGG | - | chr7.2:84548902-84548921 | None:intergenic | 40.0% | |
| AGTTGCGTCTATGTTCAACA+CGG | + | chr7.2:84549066-84549085 | MS.gene057494:CDS | 40.0% | |
| ATTCCGGGTTTGATAGAATC+TGG | - | chr7.2:84548577-84548596 | None:intergenic | 40.0% | |
| CAACTACACGGTTCACAAAA+CGG | - | chr7.2:84549051-84549070 | None:intergenic | 40.0% | |
| CAAGGTTCAAGATATCCTTC+TGG | - | chr7.2:84548946-84548965 | None:intergenic | 40.0% | |
| CTCACTTTCTTCACAGTTGT+TGG | - | chr7.2:84549307-84549326 | None:intergenic | 40.0% | |
| GAAGAAAGTGAGTGTGGTTT+GGG | + | chr7.2:84549315-84549334 | MS.gene057494:CDS | 40.0% | |
| GAAGCAACAAAAGATGCACA+TGG | + | chr7.2:84549346-84549365 | MS.gene057494:CDS | 40.0% | |
| GTATCTGCATTCTGACTGAA+TGG | + | chr7.2:84549368-84549387 | MS.gene057494:CDS | 40.0% | |
| TAACACCCCAACTAAAACTC+AGG | + | chr7.2:84548382-84548401 | MS.gene057494:CDS | 40.0% | |
| TAAGTGTCCATCCATTGAAG+TGG | + | chr7.2:84548190-84548209 | MS.gene057494:CDS | 40.0% | |
| TGAACATAGACGCAACTACA+CGG | - | chr7.2:84549063-84549082 | None:intergenic | 40.0% | |
| TGAAGAAAGTGAGTGTGGTT+TGG | + | chr7.2:84549314-84549333 | MS.gene057494:CDS | 40.0% | |
| TGGGTCGAATATGCTTATGT+TGG | - | chr7.2:84549200-84549219 | None:intergenic | 40.0% | |
| TTCACAGTTGTTGGACTCAT+TGG | - | chr7.2:84549298-84549317 | None:intergenic | 40.0% | |
| TTGGAAAACCATTGGATGCA+TGG | + | chr7.2:84549518-84549537 | MS.gene057494:CDS | 40.0% | |
| ! | AACAGCTTTTAGACCTTCAG+GGG | - | chr7.2:84548669-84548688 | None:intergenic | 40.0% |
| ! | CACTTGTTGAATGTTTGCAC+CGG | - | chr7.2:84548846-84548865 | None:intergenic | 40.0% |
| ! | GAACAGCTTTTAGACCTTCA+GGG | - | chr7.2:84548670-84548689 | None:intergenic | 40.0% |
| ! | GTCCCAATCAAACTTGTTCA+TGG | - | chr7.2:84549257-84549276 | None:intergenic | 40.0% |
| ! | TGAACAGCTTTTAGACCTTC+AGG | - | chr7.2:84548671-84548690 | None:intergenic | 40.0% |
| !! | ATGGTGAAGATTTGCTGCAT+TGG | + | chr7.2:84548125-84548144 | MS.gene057494:CDS | 40.0% |
| !! | GAAGAGTGTTTATGCTCACT+GGG | + | chr7.2:84548697-84548716 | MS.gene057494:CDS | 40.0% |
| !! | TGAAGAGTGTTTATGCTCAC+TGG | + | chr7.2:84548696-84548715 | MS.gene057494:CDS | 40.0% |
| !!! | AAGACCCTGAGTTTTAGTTG+GGG | - | chr7.2:84548390-84548409 | None:intergenic | 40.0% |
| !!! | CAAGACCCTGAGTTTTAGTT+GGG | - | chr7.2:84548391-84548410 | None:intergenic | 40.0% |
| AATCCGGACCGTGTTCTTAT+TGG | + | chr7.2:84548632-84548651 | MS.gene057494:CDS | 45.0% | |
| ACAACAGCCACTTCAATGGA+TGG | - | chr7.2:84548200-84548219 | None:intergenic | 45.0% | |
| ACCCTTCCAATCTATGAACC+TGG | + | chr7.2:84548260-84548279 | MS.gene057494:CDS | 45.0% | |
| AGAAAGATACCGGTGACACA+AGG | + | chr7.2:84549128-84549147 | MS.gene057494:CDS | 45.0% | |
| AGTATTCTGCAACCTCAGGA+AGG | - | chr7.2:84548991-84549010 | None:intergenic | 45.0% | |
| AGTGCAATGACTGCCATTGT+TGG | - | chr7.2:84548170-84548189 | None:intergenic | 45.0% | |
| ATATGTCGGTGGTCCAACAA+TGG | + | chr7.2:84548154-84548173 | MS.gene057494:CDS | 45.0% | |
| ATTTGGTCCTCGGTAACTTG+TGG | - | chr7.2:84549220-84549239 | None:intergenic | 45.0% | |
| CAAAACCGACACTAGCGTTA+AGG | - | chr7.2:84548910-84548929 | None:intergenic | 45.0% | |
| CAACATCTGTGCTGAAGAAG+AGG | - | chr7.2:84548322-84548341 | None:intergenic | 45.0% | |
| CCAACTAAAACTCAGGGTCT+TGG | + | chr7.2:84548389-84548408 | MS.gene057494:CDS | 45.0% | |
| CGAAATCCTCTGAGCCAAAA+AGG | - | chr7.2:84548789-84548808 | None:intergenic | 45.0% | |
| CGGTGCAAACATTCAACAAG+TGG | + | chr7.2:84548844-84548863 | MS.gene057494:CDS | 45.0% | |
| CTCAGCAGACCAAAGATTTG+TGG | - | chr7.2:84548744-84548763 | None:intergenic | 45.0% | |
| CTGCCATTGATGTTTGCCAA+GGG | + | chr7.2:84549158-84549177 | MS.gene057494:CDS | 45.0% | |
| GAAAGATACCGGTGACACAA+GGG | + | chr7.2:84549129-84549148 | MS.gene057494:CDS | 45.0% | |
| GACACTAGCGTTAAGGAACT+TGG | - | chr7.2:84548903-84548922 | None:intergenic | 45.0% | |
| GATGTTGTAAAGCAATGCCG+TGG | + | chr7.2:84548290-84548309 | MS.gene057494:CDS | 45.0% | |
| GCCAGGTTCATAGATTGGAA+GGG | - | chr7.2:84548264-84548283 | None:intergenic | 45.0% | |
| GCTGAGAAGTTACGTGAGAT+TGG | + | chr7.2:84549478-84549497 | MS.gene057494:CDS | 45.0% | |
| TAGCCCTTGGCAAACATCAA+TGG | - | chr7.2:84549164-84549183 | None:intergenic | 45.0% | |
| TCAAGGCCAGGTTCATAGAT+TGG | - | chr7.2:84548269-84548288 | None:intergenic | 45.0% | |
| TGAAGAAGAGGTTCTTGCCA+CGG | - | chr7.2:84548310-84548329 | None:intergenic | 45.0% | |
| TGGATAGATCCCTCTGGATT+TGG | - | chr7.2:84549237-84549256 | None:intergenic | 45.0% | |
| TGTGGTTAGTATCTGCTCCT+CGG | - | chr7.2:84548726-84548745 | None:intergenic | 45.0% | |
| TGTTCATGGATAGATCCCTC+TGG | - | chr7.2:84549243-84549262 | None:intergenic | 45.0% | |
| TGTTCCTGTCAAAACTGCTG+AGG | + | chr7.2:84548508-84548527 | MS.gene057494:CDS | 45.0% | |
| TTCCAGTATTCTGCAACCTC+AGG | - | chr7.2:84548995-84549014 | None:intergenic | 45.0% | |
| TTCCTGAGGTTGCAGAATAC+TGG | + | chr7.2:84548990-84549009 | MS.gene057494:CDS | 45.0% | |
| TTTACAACATCGTCAAGGCC+AGG | - | chr7.2:84548281-84548300 | None:intergenic | 45.0% | |
| ! | TTTGGTCCTCGGTAACTTGT+GGG | - | chr7.2:84549219-84549238 | None:intergenic | 45.0% |
| !! | AAGATTTGCTGCATTGGTGC+TGG | + | chr7.2:84548131-84548150 | MS.gene057494:CDS | 45.0% |
| !! | AGTCAAATCTGCTGCTTTGC+CGG | - | chr7.2:84548417-84548436 | None:intergenic | 45.0% |
| !! | ATTGCCTCAGCAGTTTTGAC+AGG | - | chr7.2:84548515-84548534 | None:intergenic | 45.0% |
| !! | CCAAGACCCTGAGTTTTAGT+TGG | - | chr7.2:84548392-84548411 | None:intergenic | 45.0% |
| !! | TGCATTGGTGCTGGATATGT+CGG | + | chr7.2:84548140-84548159 | MS.gene057494:CDS | 45.0% |
| !!! | CTTAACGCTAGTGTCGGTTT+TGG | + | chr7.2:84548908-84548927 | MS.gene057494:CDS | 45.0% |
| AAACCCGGAATTCCTTGCTG+AGG | + | chr7.2:84548586-84548605 | MS.gene057494:CDS | 50.0% | |
| AACCCGGAATTCCTTGCTGA+GGG | + | chr7.2:84548587-84548606 | MS.gene057494:CDS | 50.0% | |
| ACCATTGGATGCATGGCTCA+AGG | + | chr7.2:84549525-84549544 | MS.gene057494:CDS | 50.0% | |
| ACCGTGTTCTTATTGGAGGC+AGG | + | chr7.2:84548639-84548658 | MS.gene057494:CDS | 50.0% | |
| ATTCGACCCACAAGTTACCG+AGG | + | chr7.2:84549210-84549229 | MS.gene057494:CDS | 50.0% | |
| CAACAAGTGGCCTATGCTGT+CGG | + | chr7.2:84548857-84548876 | MS.gene057494:CDS | 50.0% | |
| CCCTGCCTCCAATAAGAACA+CGG | - | chr7.2:84548643-84548662 | None:intergenic | 50.0% | |
| CCGTGTTCTTATTGGAGGCA+GGG | + | chr7.2:84548640-84548659 | MS.gene057494:CDS | 50.0% | |
| CCTCCAATAAGAACACGGTC+CGG | - | chr7.2:84548638-84548657 | None:intergenic | 50.0% | |
| CCTGCCATTGATGTTTGCCA+AGG | + | chr7.2:84549157-84549176 | MS.gene057494:CDS | 50.0% | |
| CCTTGGCAAACATCAATGGC+AGG | - | chr7.2:84549160-84549179 | None:intergenic | 50.0% | |
| GATGTTTGCCAAGGGCTACT+CGG | + | chr7.2:84549166-84549185 | MS.gene057494:CDS | 50.0% | |
| GGCCAGGTTCATAGATTGGA+AGG | - | chr7.2:84548265-84548284 | None:intergenic | 50.0% | |
| GTCGACAACAGCCACTTCAA+TGG | - | chr7.2:84548204-84548223 | None:intergenic | 50.0% | |
| GTCTACATCTGCGAGTGCAA+CGG | + | chr7.2:84548965-84548984 | MS.gene057494:CDS | 50.0% | |
| GTGGTTAGTATCTGCTCCTC+GGG | - | chr7.2:84548725-84548744 | None:intergenic | 50.0% | |
| GTTCCCTCAGCAAGGAATTC+CGG | - | chr7.2:84548593-84548612 | None:intergenic | 50.0% | |
| TACCGAGGACCAAATCCAGA+GGG | + | chr7.2:84549225-84549244 | MS.gene057494:CDS | 50.0% | |
| TCCTTGAGCCATGCATCCAA+TGG | - | chr7.2:84549529-84549548 | None:intergenic | 50.0% | |
| TGCAATGTCAGCACTTTGCG+AGG | + | chr7.2:84548817-84548836 | MS.gene057494:CDS | 50.0% | |
| TGCACTCGCAGATGTAGACA+AGG | - | chr7.2:84548964-84548983 | None:intergenic | 50.0% | |
| TTACCGAGGACCAAATCCAG+AGG | + | chr7.2:84549224-84549243 | MS.gene057494:CDS | 50.0% | |
| TTCCCTCAGCAAGGAATTCC+GGG | - | chr7.2:84548592-84548611 | None:intergenic | 50.0% | |
| ! | AAAACTCAGGGTCTTGGTGC+CGG | + | chr7.2:84548395-84548414 | MS.gene057494:CDS | 50.0% |
| ! | ATCCCTCTGGATTTGGTCCT+CGG | - | chr7.2:84549230-84549249 | None:intergenic | 50.0% |
| ! | CTCATTGGCTGCAAGTGGAT+TGG | - | chr7.2:84549283-84549302 | None:intergenic | 50.0% |
| ! | TGGTGGATCTTGCTTCCAGA+AGG | + | chr7.2:84548928-84548947 | MS.gene057494:CDS | 50.0% |
| ! | TTGGACTCATTGGCTGCAAG+TGG | - | chr7.2:84549288-84549307 | None:intergenic | 50.0% |
| !! | ATTGGTGCTGGATATGTCGG+TGG | + | chr7.2:84548143-84548162 | MS.gene057494:CDS | 50.0% |
| !! | GCTTGCTGCTAACGCCTTTT+TGG | + | chr7.2:84548772-84548791 | MS.gene057494:CDS | 50.0% |
| !! | TTGGCTGCAAGTGGATTGGA+TGG | - | chr7.2:84549279-84549298 | None:intergenic | 50.0% |
| !!! | AACGCTAGTGTCGGTTTTGG+TGG | + | chr7.2:84548911-84548930 | MS.gene057494:CDS | 50.0% |
| !!! | CTAACGCCTTTTTGGCTCAG+AGG | + | chr7.2:84548780-84548799 | MS.gene057494:CDS | 50.0% |
| ACTGTTCCAGGCTGCAATGC+GGG | - | chr7.2:84548237-84548256 | None:intergenic | 55.0% | |
| AGGAGTCTCCCTTGTGTCAC+CGG | - | chr7.2:84549140-84549159 | None:intergenic | 55.0% | |
| CACTGTTCCAGGCTGCAATG+CGG | - | chr7.2:84548238-84548257 | None:intergenic | 55.0% | |
| CCGGACCGTGTTCTTATTGG+AGG | + | chr7.2:84548635-84548654 | MS.gene057494:CDS | 55.0% | |
| CTTTATCGCCGAGTAGCCCT+TGG | - | chr7.2:84549177-84549196 | None:intergenic | 55.0% | |
| GCTCAAGGATATGCCAGCTG+TGG | + | chr7.2:84549540-84549559 | MS.gene057494:CDS | 55.0% | |
| TCAGCACTTTGCGAGGCAAC+CGG | + | chr7.2:84548824-84548843 | MS.gene057494:CDS | 55.0% | |
| TGATTGCGGTTCCCTCAGCA+AGG | - | chr7.2:84548601-84548620 | None:intergenic | 55.0% | |
| TTATGCTCACTGGGTTCCCG+AGG | + | chr7.2:84548706-84548725 | MS.gene057494:CDS | 55.0% | |
| !! | ATGCTGTCGGCACTGACTCA+AGG | + | chr7.2:84548870-84548889 | MS.gene057494:CDS | 55.0% |
| !! | GTCGGCACTGACTCAAGGAT+TGG | + | chr7.2:84548875-84548894 | MS.gene057494:CDS | 55.0% |
| !! | TGAGTCAGTGCCGACAGCAT+AGG | - | chr7.2:84548870-84548889 | None:intergenic | 55.0% |
| !! | TGGAAGGGTGTCACTGTTCC+AGG | - | chr7.2:84548249-84548268 | None:intergenic | 55.0% |
| CTAAACCCCGCATTGCAGCC+TGG | + | chr7.2:84548228-84548247 | MS.gene057494:CDS | 60.0% | |
| CTGTTCCAGGCTGCAATGCG+GGG | - | chr7.2:84548236-84548255 | None:intergenic | 60.0% | |
| CGAGTGCAACGGCCTTCCTG+AGG | + | chr7.2:84548976-84548995 | MS.gene057494:CDS | 65.0% | |
| GGAGGCAGGGAAACCCCTGA+AGG | + | chr7.2:84548653-84548672 | MS.gene057494:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 84548125 | 84549567 | 84548125 | ID=MS.gene057494 |
| chr7.2 | mRNA | 84548125 | 84549567 | 84548125 | ID=MS.gene057494.t1;Parent=MS.gene057494 |
| chr7.2 | exon | 84548125 | 84549567 | 84548125 | ID=MS.gene057494.t1.exon1;Parent=MS.gene057494.t1 |
| chr7.2 | CDS | 84548125 | 84549567 | 84548125 | ID=cds.MS.gene057494.t1;Parent=MS.gene057494.t1 |
| Gene Sequence |
| Protein sequence |
