Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97594.t1 | XP_003621350.1 | 97.2 | 322 | 8 | 1 | 1 | 321 | 1 | 322 | 6.30E-178 | 633.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97594.t1 | Q72GI1 | 33.5 | 167 | 109 | 1 | 110 | 276 | 5 | 169 | 7.2e-21 | 102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97594.t1 | G7L451 | 97.2 | 322 | 8 | 1 | 1 | 321 | 1 | 322 | 4.6e-178 | 633.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene97594 | 0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene049758 | MS.gene97594 | 0.810529 | 1.10E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene97594 | 0.827537 | 1.48E-54 | -1.69E-46 |
| MS.gene051663 | MS.gene97594 | 0.831458 | 1.65E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene97594 | 0.833253 | 5.93E-56 | -1.69E-46 |
| MS.gene054942 | MS.gene97594 | 0.813584 | 2.38E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene97594 | 0.817125 | 3.88E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene97594 | 0.804889 | 1.74E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene97594 | 0.804315 | 2.29E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene97594 | 0.801131 | 1.04E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene97594 | 0.826067 | 3.32E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene97594 | 0.827305 | 1.68E-54 | -1.69E-46 |
| MS.gene060476 | MS.gene97594 | 0.812127 | 4.96E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97594.t1 | MTR_7g012240 | 97.205 | 322 | 8 | 1 | 1 | 321 | 1 | 322 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97594.t1 | AT5G15390 | 65.371 | 283 | 92 | 3 | 39 | 316 | 62 | 343 | 2.74e-133 | 383 |
| MS.gene97594.t1 | AT5G15390 | 63.000 | 200 | 68 | 3 | 39 | 233 | 62 | 260 | 2.64e-86 | 260 |
Find 80 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAAGGGTTGTGTGATTT+TGG | 0.242135 | 7.4:-87201535 | MS.gene97594:CDS |
| GTTTGCTTGTCACAGGTATA+AGG | 0.315980 | 7.4:-87199786 | MS.gene97594:intron |
| TAGTAGTCGGGAACGAAAAT+AGG | 0.320600 | 7.4:-87199433 | MS.gene97594:intron |
| GAAACGAGGAAGGAGAGATT+TGG | 0.353406 | 7.4:-87201598 | MS.gene97594:CDS |
| CGGCATTTGCAGGGCTGTCA+TGG | 0.355640 | 7.4:-87198552 | MS.gene97594:intron |
| GAGAGAGGGTTTGAATTTGA+AGG | 0.375465 | 7.4:+87201885 | None:intergenic |
| GGGTATTAGTGACGAGGCTT+TGG | 0.401379 | 7.4:-87199100 | MS.gene97594:CDS |
| AATGTTTGTCTTGTTGTTGA+AGG | 0.409274 | 7.4:-87201550 | MS.gene97594:CDS |
| ATGGTTAGACATTGAACTTT+GGG | 0.409657 | 7.4:-87199732 | MS.gene97594:CDS |
| TTTCGGTCTGCTGATGCTCT+TGG | 0.411307 | 7.4:-87201496 | MS.gene97594:CDS |
| AGAGAGTGATGAACACAATA+TGG | 0.416986 | 7.4:+87201912 | None:intergenic |
| TTCAATGTTTCAGTTGCTGC+AGG | 0.418832 | 7.4:-87199027 | MS.gene97594:CDS |
| GGCATTTGCAGGGCTGTCAT+GGG | 0.424090 | 7.4:-87198551 | MS.gene97594:intron |
| GAGTCCACCATCCCTTTCAT+TGG | 0.432958 | 7.4:+87199051 | None:intergenic |
| TGCACCATGCTGTTTGTGAT+AGG | 0.439772 | 7.4:-87198996 | MS.gene97594:CDS |
| TAAGCATGGGTGCGGAGAAA+TGG | 0.443836 | 7.4:-87199751 | MS.gene97594:CDS |
| AATGGTTAGACATTGAACTT+TGG | 0.449768 | 7.4:-87199733 | MS.gene97594:CDS |
| TCTCCGCACCCATGCTTACA+TGG | 0.459755 | 7.4:+87199756 | None:intergenic |
| TGGATGGTGTCGTTTGGTTG+AGG | 0.465669 | 7.4:+87201793 | None:intergenic |
| ATGTTGTGGATGGTGTCGTT+TGG | 0.471323 | 7.4:+87201787 | None:intergenic |
| CACTGCAGTATTCCAATGAA+AGG | 0.473386 | 7.4:-87199063 | MS.gene97594:CDS |
| GACTACTATTGCAGTTGGAC+AGG | 0.474059 | 7.4:+87199448 | None:intergenic |
| TTTCTTCTGATGCTAACAAA+AGG | 0.479941 | 7.4:-87201453 | MS.gene97594:intron |
| ATGTTTGTCTTGTTGTTGAA+GGG | 0.487440 | 7.4:-87201549 | MS.gene97594:CDS |
| CATCGAAAACTGTCAAGGTA+AGG | 0.487532 | 7.4:+87201682 | None:intergenic |
| GGAACCACCGAGGTTGAGAT+TGG | 0.496679 | 7.4:+87201704 | None:intergenic |
| TGAGGAATAGCGGCGGTTTG+TGG | 0.501769 | 7.4:+87201811 | None:intergenic |
| TTCCCGACTACTATTGCAGT+TGG | 0.501892 | 7.4:+87199443 | None:intergenic |
| TCTGAAGTTATTGAAGCTGT+TGG | 0.523811 | 7.4:-87201634 | MS.gene97594:CDS |
| GTCCAACTGCAATAGTAGTC+GGG | 0.524303 | 7.4:-87199445 | MS.gene97594:CDS |
| TGAAGAAAGACAAATTCTAC+TGG | 0.526302 | 7.4:-87198517 | MS.gene97594:CDS |
| GGACAATCGCCATGTAAGCA+TGG | 0.526685 | 7.4:-87199765 | MS.gene97594:CDS |
| AGAGGGTTTGAATTTGAAGG+TGG | 0.531658 | 7.4:+87201888 | None:intergenic |
| GCGGAGTGAAGAGGAGAGAG+AGG | 0.536433 | 7.4:+87201870 | None:intergenic |
| TTTCTATCTATGACATGGAC+TGG | 0.537177 | 7.4:-87199472 | MS.gene97594:CDS |
| GAGGGTTGTGACACCTTCGT+TGG | 0.539801 | 7.4:+87201756 | None:intergenic |
| TTCCTCGTTTCAGAAATACA+TGG | 0.543625 | 7.4:+87201610 | None:intergenic |
| AGCATCGTGAGGTTGATTTG+TGG | 0.546348 | 7.4:+87201845 | None:intergenic |
| TGTCCAACTGCAATAGTAGT+CGG | 0.560483 | 7.4:-87199446 | MS.gene97594:CDS |
| GTGAGGTTGATTTGTGGCGG+CGG | 0.560896 | 7.4:+87201851 | None:intergenic |
| CACAAACAGCATGGTGCATG+AGG | 0.572207 | 7.4:+87199001 | None:intergenic |
| AACATCCTCACCTCCAACGA+AGG | 0.576742 | 7.4:-87201769 | MS.gene97594:CDS |
| GACAATCGCCATGTAAGCAT+GGG | 0.576984 | 7.4:-87199764 | MS.gene97594:CDS |
| TCGAATTGCAACGACTCATG+TGG | 0.580175 | 7.4:-87199666 | MS.gene97594:CDS |
| TGACACCTTCGTTGGAGGTG+AGG | 0.585666 | 7.4:+87201764 | None:intergenic |
| ATCGAAAACTGTCAAGGTAA+GGG | 0.588501 | 7.4:+87201683 | None:intergenic |
| ACTGCAGTATTCCAATGAAA+GGG | 0.590576 | 7.4:-87199062 | MS.gene97594:CDS |
| CGTTGGAGGTGAGGATGTTG+TGG | 0.591361 | 7.4:+87201773 | None:intergenic |
| CGAATTGCAACGACTCATGT+GGG | 0.591975 | 7.4:-87199665 | MS.gene97594:CDS |
| ATCGTGAGGTTGATTTGTGG+CGG | 0.592183 | 7.4:+87201848 | None:intergenic |
| GGTTGTGACACCTTCGTTGG+AGG | 0.592186 | 7.4:+87201759 | None:intergenic |
| TTGTGATAGGATTTCTCGCA+CGG | 0.592744 | 7.4:-87198983 | MS.gene97594:intron |
| TCGCCATGTAAGCATGGGTG+CGG | 0.596200 | 7.4:-87199759 | MS.gene97594:CDS |
| GGAGGTGAGGATGTTGTGGA+TGG | 0.597992 | 7.4:+87201777 | None:intergenic |
| GTCGTTTGGTTGAGGAATAG+CGG | 0.599599 | 7.4:+87201801 | None:intergenic |
| TGAACTTTGGGACTCTACAA+AGG | 0.604689 | 7.4:-87199720 | MS.gene97594:CDS |
| GCATTTGCAGGGCTGTCATG+GGG | 0.606787 | 7.4:-87198550 | MS.gene97594:intron |
| TTCATCACCAATCTCAACCT+CGG | 0.607523 | 7.4:-87201711 | MS.gene97594:CDS |
| TTGCAGGGGTATTAGTGACG+AGG | 0.607935 | 7.4:-87199106 | MS.gene97594:intron |
| TATTCCAATGAAAGGGATGG+TGG | 0.609611 | 7.4:-87199055 | MS.gene97594:CDS |
| ATGTATTTCTGAAACGAGGA+AGG | 0.610984 | 7.4:-87201608 | MS.gene97594:CDS |
| GGTTGAGATTGGTGATGAAG+TGG | 0.618911 | 7.4:+87201715 | None:intergenic |
| GAACTAAGAAACAAGATGAG+TGG | 0.624734 | 7.4:-87201943 | None:intergenic |
| TTTGTGGCGGCGGAGTGAAG+AGG | 0.627280 | 7.4:+87201861 | None:intergenic |
| CAGTATTCCAATGAAAGGGA+TGG | 0.627284 | 7.4:-87199058 | MS.gene97594:CDS |
| TATCGCATCGAAAACTGTCA+AGG | 0.629447 | 7.4:+87201677 | None:intergenic |
| AATAGCGGCGGTTTGTGGTG+TGG | 0.634221 | 7.4:+87201816 | None:intergenic |
| CGAAGATTATGCAAATCGCA+AGG | 0.638049 | 7.4:-87198451 | MS.gene97594:CDS |
| CGGAGTGAAGAGGAGAGAGA+GGG | 0.639831 | 7.4:+87201871 | None:intergenic |
| GTCCATGTATTTCTGAAACG+AGG | 0.646809 | 7.4:-87201612 | MS.gene97594:CDS |
| GAAGGAGAGATTTGGAAAAG+CGG | 0.653862 | 7.4:-87201590 | MS.gene97594:CDS |
| ATAGGTTTCTATCTATGACA+TGG | 0.656344 | 7.4:-87199477 | MS.gene97594:intron |
| TCGATGCGATAATGGTTGCG+AGG | 0.665914 | 7.4:-87201665 | MS.gene97594:CDS |
| AAATCCTATCACAAACAGCA+TGG | 0.670020 | 7.4:+87198992 | None:intergenic |
| ATCACCAATCTCAACCTCGG+TGG | 0.691337 | 7.4:-87201708 | MS.gene97594:CDS |
| GACTCATGTGGGAATCGATG+CGG | 0.703307 | 7.4:-87199654 | MS.gene97594:intron |
| TTTGAAATGTTGAAATCACG+TGG | 0.705619 | 7.4:-87199692 | MS.gene97594:CDS |
| TGTGGTGTAGCAGCATCGTG+AGG | 0.726344 | 7.4:+87201834 | None:intergenic |
| GTTTGGTTGAGGAATAGCGG+CGG | 0.735664 | 7.4:+87201804 | None:intergenic |
| TCAAGGTAAGGGAACCACCG+AGG | 0.756098 | 7.4:+87201694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATGAATATATTATAG+TGG | - | chr7.4:87200066-87200085 | MS.gene97594:intron | 10.0% |
| !! | TATAAGAAAAACTAATAAAA+AGG | - | chr7.4:87199322-87199341 | MS.gene97594:intron | 10.0% |
| !!! | AAGAAAAAAAAAGTTTTTAT+AGG | + | chr7.4:87199184-87199203 | None:intergenic | 10.0% |
| !!! | ATAGTTCTATAATTTATATT+TGG | - | chr7.4:87201742-87201761 | MS.gene97594:CDS | 10.0% |
| !!! | ATTAATATTTTACAATTCTA+GGG | - | chr7.4:87199868-87199887 | MS.gene97594:intron | 10.0% |
| !!! | TTTTAATTTTATACTTTATG+TGG | - | chr7.4:87201408-87201427 | MS.gene97594:intron | 10.0% |
| !! | ATATTTACTCTTCATAAAAT+AGG | - | chr7.4:87199994-87200013 | MS.gene97594:intron | 15.0% |
| !! | ATTAATTTCTTATAAGAGAA+AGG | + | chr7.4:87201553-87201572 | None:intergenic | 15.0% |
| !! | GATAATTTAAGAATATAGTA+AGG | + | chr7.4:87200236-87200255 | None:intergenic | 15.0% |
| !! | TTAATTTCTTATAAGAGAAA+GGG | + | chr7.4:87201552-87201571 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTATATTTAACCA+GGG | - | chr7.4:87201222-87201241 | MS.gene97594:intron | 15.0% |
| !!! | GATTAATATTTTACAATTCT+AGG | - | chr7.4:87199867-87199886 | MS.gene97594:intron | 15.0% |
| !!! | GTTTTGAATTATTGATAATA+TGG | - | chr7.4:87199927-87199946 | MS.gene97594:intron | 15.0% |
| !! | AAAGTAACATTATTCAAGAA+GGG | + | chr7.4:87200432-87200451 | None:intergenic | 20.0% |
| !! | AATTCAACATAAATAACTGT+TGG | + | chr7.4:87200384-87200403 | None:intergenic | 20.0% |
| !! | AGACTATAATGATATTAAGT+TGG | - | chr7.4:87199769-87199788 | MS.gene97594:CDS | 20.0% |
| !! | ATTTAACTATACAATACTGT+TGG | + | chr7.4:87201583-87201602 | None:intergenic | 20.0% |
| !! | CTATATTCTTAAATTATCAG+TGG | - | chr7.4:87200238-87200257 | MS.gene97594:intron | 20.0% |
| !! | CTTTGAATAACCAAAAAATA+AGG | + | chr7.4:87201677-87201696 | None:intergenic | 20.0% |
| !! | GAATGGAAAATATAATAGAA+TGG | + | chr7.4:87200340-87200359 | None:intergenic | 20.0% |
| !! | TAAAGTAACATTATTCAAGA+AGG | + | chr7.4:87200433-87200452 | None:intergenic | 20.0% |
| !!! | ATAACAATTTTCTACAATAG+AGG | + | chr7.4:87200169-87200188 | None:intergenic | 20.0% |
| !!! | GATTTTGTTTATATTTAACC+AGG | - | chr7.4:87201221-87201240 | MS.gene97594:intron | 20.0% |
| !!! | GTTTTTCTTATAGTTTTTCT+AGG | + | chr7.4:87199314-87199333 | None:intergenic | 20.0% |
| !!! | TAACAATTTTCTACAATAGA+GGG | + | chr7.4:87200168-87200187 | None:intergenic | 20.0% |
| !!! | TATTGATAATATGGAGAATT+AGG | - | chr7.4:87199936-87199955 | MS.gene97594:intron | 20.0% |
| !!! | TTCAATTTGTTGTGTATTTT+TGG | - | chr7.4:87198991-87199010 | MS.gene97594:CDS | 20.0% |
| ! | ATTATACATTTCCTTAGTGT+TGG | - | chr7.4:87201062-87201081 | MS.gene97594:intron | 25.0% |
| ! | CTTCTTTGGTTATTATTGTT+GGG | - | chr7.4:87200295-87200314 | MS.gene97594:intron | 25.0% |
| ! | GAATAACCAAAAAATAAGGT+GGG | + | chr7.4:87201673-87201692 | None:intergenic | 25.0% |
| ! | GGATCTAAAGATTAATGAAT+TGG | - | chr7.4:87199343-87199362 | MS.gene97594:intron | 25.0% |
| ! | TATTCATAATTAAGTTCCCA+AGG | + | chr7.4:87200058-87200077 | None:intergenic | 25.0% |
| ! | TGAATAACCAAAAAATAAGG+TGG | + | chr7.4:87201674-87201693 | None:intergenic | 25.0% |
| ! | TGCATTTGATATTAGATAGA+TGG | - | chr7.4:87199836-87199855 | MS.gene97594:intron | 25.0% |
| !! | AACAATTTTCTACAATAGAG+GGG | + | chr7.4:87200167-87200186 | None:intergenic | 25.0% |
| !! | TTTTGAATTAGGGATCTTTT+TGG | - | chr7.4:87199903-87199922 | MS.gene97594:intron | 25.0% |
| !!! | CTTTTTGGAGTTTTGAATTA+GGG | - | chr7.4:87199893-87199912 | MS.gene97594:intron | 25.0% |
| !!! | TCTTTTTGGAGTTTTGAATT+AGG | - | chr7.4:87199892-87199911 | MS.gene97594:intron | 25.0% |
| AAGTGATTGAATATCCTAAC+TGG | - | chr7.4:87199634-87199653 | MS.gene97594:intron | 30.0% | |
| AATGGTTAGACATTGAACTT+TGG | - | chr7.4:87200629-87200648 | MS.gene97594:intron | 30.0% | |
| AATTCAAAACACCTTAACCT+TGG | - | chr7.4:87200038-87200057 | MS.gene97594:intron | 30.0% | |
| ACTTCATTTATGGTTGAGAA+TGG | + | chr7.4:87200357-87200376 | None:intergenic | 30.0% | |
| AGATGTTGTAGTAATGAGAA+TGG | - | chr7.4:87199120-87199139 | MS.gene97594:intron | 30.0% | |
| AGCACCTATAGTATAAAAGA+CGG | - | chr7.4:87199052-87199071 | MS.gene97594:CDS | 30.0% | |
| ATAGAGTATAGTATCACTAG+AGG | - | chr7.4:87199148-87199167 | MS.gene97594:intron | 30.0% | |
| ATAGGTTTCTATCTATGACA+TGG | - | chr7.4:87200885-87200904 | MS.gene97594:intron | 30.0% | |
| ATGCATCAATACATGATTAC+AGG | + | chr7.4:87200788-87200807 | None:intergenic | 30.0% | |
| ATGGTTAGACATTGAACTTT+GGG | - | chr7.4:87200630-87200649 | MS.gene97594:intron | 30.0% | |
| ATTCAAAACACCTTAACCTT+GGG | - | chr7.4:87200039-87200058 | MS.gene97594:intron | 30.0% | |
| CTAAGTCAAATTGAACTGAA+CGG | + | chr7.4:87201028-87201047 | None:intergenic | 30.0% | |
| GCTTCTTTGGTTATTATTGT+TGG | - | chr7.4:87200294-87200313 | MS.gene97594:intron | 30.0% | |
| GTTGAGGTGAAATTTGATAA+TGG | - | chr7.4:87198945-87198964 | MS.gene97594:intron | 30.0% | |
| TAACAAAAAGCTCATGAGAT+TGG | + | chr7.4:87200463-87200482 | None:intergenic | 30.0% | |
| TAACTGGTGCTTGAAATTAT+AGG | - | chr7.4:87199650-87199669 | MS.gene97594:intron | 30.0% | |
| TAAGTCAAATTGAACTGAAC+GGG | + | chr7.4:87201027-87201046 | None:intergenic | 30.0% | |
| TAATTAAGTTCCCAAGGTTA+AGG | + | chr7.4:87200052-87200071 | None:intergenic | 30.0% | |
| TATAATTTCAAGCACCAGTT+AGG | + | chr7.4:87199651-87199670 | None:intergenic | 30.0% | |
| TATGTTACACGTAGTAGTAA+AGG | + | chr7.4:87200556-87200575 | None:intergenic | 30.0% | |
| TCTTACAGTTCTATACACAT+TGG | - | chr7.4:87201508-87201527 | MS.gene97594:CDS | 30.0% | |
| TGAAGAAAGACAAATTCTAC+TGG | - | chr7.4:87201845-87201864 | MS.gene97594:CDS | 30.0% | |
| TGCATCAATACATGATTACA+GGG | + | chr7.4:87200787-87200806 | None:intergenic | 30.0% | |
| TGTTCTATGTCTTGTAACTT+GGG | - | chr7.4:87201181-87201200 | MS.gene97594:intron | 30.0% | |
| TTTCTTCTGATGCTAACAAA+AGG | - | chr7.4:87198909-87198928 | MS.gene97594:intron | 30.0% | |
| ! | AGTGAAGTCTGAATTTTTCA+CGG | - | chr7.4:87201790-87201809 | MS.gene97594:CDS | 30.0% |
| ! | ATACAGAAATAACCTTTTGC+TGG | - | chr7.4:87201464-87201483 | MS.gene97594:CDS | 30.0% |
| ! | GCATCTTCAAAAGTTTTACA+TGG | + | chr7.4:87201120-87201139 | None:intergenic | 30.0% |
| ! | TTTCCCGTCTTTTATACTAT+AGG | + | chr7.4:87199059-87199078 | None:intergenic | 30.0% |
| ! | TTTGAAATGTTGAAATCACG+TGG | - | chr7.4:87200670-87200689 | MS.gene97594:intron | 30.0% |
| ! | TTTTCGTTGCATTTTCATGA+GGG | + | chr7.4:87198627-87198646 | None:intergenic | 30.0% |
| !! | AATGTTTGTCTTGTTGTTGA+AGG | - | chr7.4:87198812-87198831 | MS.gene97594:intron | 30.0% |
| !! | ATGTTTGTCTTGTTGTTGAA+GGG | - | chr7.4:87198813-87198832 | MS.gene97594:intron | 30.0% |
| !! | GTGTGATTTTGGAAATGTTT+CGG | - | chr7.4:87198838-87198857 | MS.gene97594:intron | 30.0% |
| !! | TACAATTCTAGGGATCTTTT+TGG | - | chr7.4:87199878-87199897 | MS.gene97594:intron | 30.0% |
| !! | TGTTGGCTTAACTTCATTTA+TGG | + | chr7.4:87200367-87200386 | None:intergenic | 30.0% |
| !!! | AGGGTTTTATTCTTTTTGCA+GGG | - | chr7.4:87201241-87201260 | MS.gene97594:intron | 30.0% |
| !!! | GTGTATTTTTGGTTTGTAGA+CGG | - | chr7.4:87199002-87199021 | MS.gene97594:CDS | 30.0% |
| !!! | GTTATTCCCACCTTATTTTT+TGG | - | chr7.4:87201664-87201683 | MS.gene97594:CDS | 30.0% |
| AAAACTAGGTTTAGGTGGTT+TGG | - | chr7.4:87199076-87199095 | MS.gene97594:CDS | 35.0% | |
| AAACTAGGTTTAGGTGGTTT+GGG | - | chr7.4:87199077-87199096 | MS.gene97594:CDS | 35.0% | |
| AAATAAGGTGGGAATAACCA+TGG | + | chr7.4:87201662-87201681 | None:intergenic | 35.0% | |
| AAATCCTATCACAAACAGCA+TGG | + | chr7.4:87201373-87201392 | None:intergenic | 35.0% | |
| AACCTATACACAGCAAGAAA+AGG | + | chr7.4:87200872-87200891 | None:intergenic | 35.0% | |
| AAGACAAGCGACATATATGA+AGG | + | chr7.4:87200961-87200980 | None:intergenic | 35.0% | |
| AATCATATTCGTCCTTCTGT+TGG | - | chr7.4:87199737-87199756 | MS.gene97594:CDS | 35.0% | |
| ACTGCAGTATTCCAATGAAA+GGG | - | chr7.4:87201300-87201319 | MS.gene97594:intron | 35.0% | |
| AGAGAGTGATGAACACAATA+TGG | + | chr7.4:87198453-87198472 | None:intergenic | 35.0% | |
| AGTCAATCCTTGACATTGTA+CGG | + | chr7.4:87199971-87199990 | None:intergenic | 35.0% | |
| ATCGAAAACTGTCAAGGTAA+GGG | + | chr7.4:87198682-87198701 | None:intergenic | 35.0% | |
| CCAAATGCAATGAGTTTGTA+AGG | + | chr7.4:87199607-87199626 | None:intergenic | 35.0% | |
| CCTTACAAACTCATTGCATT+TGG | - | chr7.4:87199604-87199623 | MS.gene97594:intron | 35.0% | |
| CTAAATTAGCCCACCTAAAT+TGG | - | chr7.4:87199213-87199232 | MS.gene97594:intron | 35.0% | |
| CTGCAAAAAGAATAAAACCC+TGG | + | chr7.4:87201242-87201261 | None:intergenic | 35.0% | |
| CTGTTCTATGTCTTGTAACT+TGG | - | chr7.4:87201180-87201199 | MS.gene97594:intron | 35.0% | |
| GCACCTATAGTATAAAAGAC+GGG | - | chr7.4:87199053-87199072 | MS.gene97594:CDS | 35.0% | |
| GTATAAAAGACGGGAAAACT+AGG | - | chr7.4:87199062-87199081 | MS.gene97594:CDS | 35.0% | |
| TACAATGTCAAGGATTGACT+TGG | - | chr7.4:87199971-87199990 | MS.gene97594:intron | 35.0% | |
| TGTTTGTATCAGTGCTTCTT+TGG | - | chr7.4:87200281-87200300 | MS.gene97594:intron | 35.0% | |
| TTCCTCGTTTCAGAAATACA+TGG | + | chr7.4:87198755-87198774 | None:intergenic | 35.0% | |
| TTTCTATCTATGACATGGAC+TGG | - | chr7.4:87200890-87200909 | MS.gene97594:intron | 35.0% | |
| TTTCTGTTCTAACCAGCAAA+AGG | + | chr7.4:87201479-87201498 | None:intergenic | 35.0% | |
| ! | AAAGCCTTATCCCACTAAAT+GGG | + | chr7.4:87199424-87199443 | None:intergenic | 35.0% |
| ! | AATTTTTCACGGCATTTGCA+GGG | - | chr7.4:87201801-87201820 | MS.gene97594:CDS | 35.0% |
| ! | AGGTGTTTACATTGTTGTTG+AGG | - | chr7.4:87198929-87198948 | MS.gene97594:intron | 35.0% |
| ! | ATGTGAGCTTGTTTGTATGT+TGG | - | chr7.4:87201142-87201161 | MS.gene97594:intron | 35.0% |
| ! | ATTCTATCTGGTGCCAATTT+AGG | + | chr7.4:87199229-87199248 | None:intergenic | 35.0% |
| ! | CTATAGTGCAGTTGATTTAG+TGG | - | chr7.4:87200113-87200132 | MS.gene97594:intron | 35.0% |
| ! | GTTGTTGTTGTTGTTGTAGA+CGG | - | chr7.4:87199459-87199478 | MS.gene97594:CDS | 35.0% |
| ! | GTTTTCGTTGCATTTTCATG+AGG | + | chr7.4:87198628-87198647 | None:intergenic | 35.0% |
| ! | TCTGAAGTTATTGAAGCTGT+TGG | - | chr7.4:87198728-87198747 | MS.gene97594:intron | 35.0% |
| ! | TGGTTTTTCTGCATCTCATT+TGG | - | chr7.4:87201762-87201781 | MS.gene97594:CDS | 35.0% |
| !! | ATGTATTTCTGAAACGAGGA+AGG | - | chr7.4:87198754-87198773 | MS.gene97594:intron | 35.0% |
| !! | TAACATAGTTTGCTTGTCAC+AGG | - | chr7.4:87200569-87200588 | MS.gene97594:intron | 35.0% |
| !! | TATCAAAAGCACCAACACTA+AGG | + | chr7.4:87201076-87201095 | None:intergenic | 35.0% |
| !! | TGATTTTGGAAATGTTTCGG+CGG | - | chr7.4:87198841-87198860 | MS.gene97594:intron | 35.0% |
| !!! | CAGGGTTTTATTCTTTTTGC+AGG | - | chr7.4:87201240-87201259 | MS.gene97594:intron | 35.0% |
| !!! | GGGTTTTATTCTTTTTGCAG+GGG | - | chr7.4:87201242-87201261 | MS.gene97594:intron | 35.0% |
| AAGACGGGAAAACTAGGTTT+AGG | - | chr7.4:87199068-87199087 | MS.gene97594:CDS | 40.0% | |
| AATGTTCGGCCTAACAATCT+CGG | - | chr7.4:87199562-87199581 | MS.gene97594:intron | 40.0% | |
| ACACACAAAGGGGATATCTT+GGG | - | chr7.4:87199516-87199535 | MS.gene97594:intron | 40.0% | |
| AGAGGGTTTGAATTTGAAGG+TGG | + | chr7.4:87198477-87198496 | None:intergenic | 40.0% | |
| AGGTAACCACGGAAAATGTT+CGG | - | chr7.4:87199548-87199567 | MS.gene97594:intron | 40.0% | |
| ATCTCAGGTTCGATTCTATC+TGG | + | chr7.4:87199241-87199260 | None:intergenic | 40.0% | |
| ATGTGACCAACCCATTTAGT+GGG | - | chr7.4:87199411-87199430 | MS.gene97594:intron | 40.0% | |
| CACTGCAGTATTCCAATGAA+AGG | - | chr7.4:87201299-87201318 | MS.gene97594:intron | 40.0% | |
| CAGTATTCCAATGAAAGGGA+TGG | - | chr7.4:87201304-87201323 | MS.gene97594:intron | 40.0% | |
| CATCGAAAACTGTCAAGGTA+AGG | + | chr7.4:87198683-87198702 | None:intergenic | 40.0% | |
| CGAAGATTATGCAAATCGCA+AGG | - | chr7.4:87201911-87201930 | MS.gene97594:CDS | 40.0% | |
| GAAGGAGAGATTTGGAAAAG+CGG | - | chr7.4:87198772-87198791 | MS.gene97594:intron | 40.0% | |
| GAATCGAACCTGAGATATTG+AGG | - | chr7.4:87199245-87199264 | MS.gene97594:intron | 40.0% | |
| GAGAGAGGGTTTGAATTTGA+AGG | + | chr7.4:87198480-87198499 | None:intergenic | 40.0% | |
| GTTTGCTTGTCACAGGTATA+AGG | - | chr7.4:87200576-87200595 | MS.gene97594:intron | 40.0% | |
| TAGTAGTCGGGAACGAAAAT+AGG | - | chr7.4:87200929-87200948 | MS.gene97594:intron | 40.0% | |
| TATACGACCGTACAATGTCA+AGG | - | chr7.4:87199961-87199980 | MS.gene97594:intron | 40.0% | |
| TATCGCATCGAAAACTGTCA+AGG | + | chr7.4:87198688-87198707 | None:intergenic | 40.0% | |
| TATTCCAATGAAAGGGATGG+TGG | - | chr7.4:87201307-87201326 | MS.gene97594:intron | 40.0% | |
| TCTCTGCAAAAACCAACAGA+AGG | + | chr7.4:87199752-87199771 | None:intergenic | 40.0% | |
| TGTCCAACTGCAATAGTAGT+CGG | - | chr7.4:87200916-87200935 | MS.gene97594:intron | 40.0% | |
| TTCAATGTTTCAGTTGCTGC+AGG | - | chr7.4:87201335-87201354 | MS.gene97594:intron | 40.0% | |
| TTCATCACCAATCTCAACCT+CGG | - | chr7.4:87198651-87198670 | MS.gene97594:intron | 40.0% | |
| TTGTGATAGGATTTCTCGCA+CGG | - | chr7.4:87201379-87201398 | MS.gene97594:intron | 40.0% | |
| ! | AACATTTTCCGTGGTTACCT+GGG | + | chr7.4:87199548-87199567 | None:intergenic | 40.0% |
| ! | CAAAGCCTTATCCCACTAAA+TGG | + | chr7.4:87199425-87199444 | None:intergenic | 40.0% |
| ! | GAATTTTTCACGGCATTTGC+AGG | - | chr7.4:87201800-87201819 | MS.gene97594:CDS | 40.0% |
| ! | GACAGTTTTCGATGCGATAA+TGG | - | chr7.4:87198689-87198708 | MS.gene97594:intron | 40.0% |
| ! | GTTGAAGGGTTGTGTGATTT+TGG | - | chr7.4:87198827-87198846 | MS.gene97594:intron | 40.0% |
| ! | TAGTTTTTCTAGGTCAAGCC+TGG | + | chr7.4:87199304-87199323 | None:intergenic | 40.0% |
| ! | TATCTGGTGCCAATTTAGGT+GGG | + | chr7.4:87199225-87199244 | None:intergenic | 40.0% |
| !! | GACCTTTTCTTGCTGTGTAT+AGG | - | chr7.4:87200867-87200886 | MS.gene97594:intron | 40.0% |
| !! | GTCCATGTATTTCTGAAACG+AGG | - | chr7.4:87198750-87198769 | MS.gene97594:intron | 40.0% |
| !! | TGAACTTTGGGACTCTACAA+AGG | - | chr7.4:87200642-87200661 | MS.gene97594:intron | 40.0% |
| ACACACACACACACACAAAG+GGG | - | chr7.4:87199506-87199525 | MS.gene97594:intron | 45.0% | |
| ACGGGAAAACTAGGTTTAGG+TGG | - | chr7.4:87199071-87199090 | MS.gene97594:CDS | 45.0% | |
| CACACACAAAGGGGATATCT+TGG | - | chr7.4:87199515-87199534 | MS.gene97594:intron | 45.0% | |
| CACACACACACACACACAAA+GGG | - | chr7.4:87199505-87199524 | MS.gene97594:intron | 45.0% | |
| CATGTGACCAACCCATTTAG+TGG | - | chr7.4:87199410-87199429 | MS.gene97594:intron | 45.0% | |
| CCAACCCATTTAGTGGGATA+AGG | - | chr7.4:87199417-87199436 | MS.gene97594:intron | 45.0% | |
| CCTTATCCCACTAAATGGGT+TGG | + | chr7.4:87199420-87199439 | None:intergenic | 45.0% | |
| CGAATTGCAACGACTCATGT+GGG | - | chr7.4:87200697-87200716 | MS.gene97594:intron | 45.0% | |
| GAAACGAGGAAGGAGAGATT+TGG | - | chr7.4:87198764-87198783 | MS.gene97594:intron | 45.0% | |
| GACAATCGCCATGTAAGCAT+GGG | - | chr7.4:87200598-87200617 | MS.gene97594:intron | 45.0% | |
| GACTACTATTGCAGTTGGAC+AGG | + | chr7.4:87200917-87200936 | None:intergenic | 45.0% | |
| GCTGTGTATTCTTTCCTCCA+TGG | - | chr7.4:87201642-87201661 | MS.gene97594:CDS | 45.0% | |
| GTCCAACTGCAATAGTAGTC+GGG | - | chr7.4:87200917-87200936 | MS.gene97594:intron | 45.0% | |
| GTCGTTTGGTTGAGGAATAG+CGG | + | chr7.4:87198564-87198583 | None:intergenic | 45.0% | |
| TAAGGTGGGAATAACCATGG+AGG | + | chr7.4:87201659-87201678 | None:intergenic | 45.0% | |
| TCACACACACACACACACAA+AGG | - | chr7.4:87199504-87199523 | MS.gene97594:intron | 45.0% | |
| TCGAACCTGAGATATTGAGG+AGG | - | chr7.4:87199248-87199267 | MS.gene97594:intron | 45.0% | |
| TCGAATTGCAACGACTCATG+TGG | - | chr7.4:87200696-87200715 | MS.gene97594:intron | 45.0% | |
| TTCCCGACTACTATTGCAGT+TGG | + | chr7.4:87200922-87200941 | None:intergenic | 45.0% | |
| TTTGTAAGGCCTAGCTCAAC+TGG | + | chr7.4:87199593-87199612 | None:intergenic | 45.0% | |
| ! | CAGGGTTCAGACTATTTCTC+AGG | + | chr7.4:87200769-87200788 | None:intergenic | 45.0% |
| ! | CTATCTGGTGCCAATTTAGG+TGG | + | chr7.4:87199226-87199245 | None:intergenic | 45.0% |
| ! | GAAATGTTTCGGCGGCTTTT+CGG | - | chr7.4:87198849-87198868 | MS.gene97594:intron | 45.0% |
| ! | GAACATTTTCCGTGGTTACC+TGG | + | chr7.4:87199549-87199568 | None:intergenic | 45.0% |
| ! | GTGTGTGTGTGAGTTTTCAG+TGG | + | chr7.4:87199496-87199515 | None:intergenic | 45.0% |
| ! | TGCACCATGCTGTTTGTGAT+AGG | - | chr7.4:87201366-87201385 | MS.gene97594:intron | 45.0% |
| ! | TTTTTCTAGGTCAAGCCTGG+TGG | + | chr7.4:87199301-87199320 | None:intergenic | 45.0% |
| !! | AAGCCTGGTGGTATTGACTT+GGG | + | chr7.4:87199289-87199308 | None:intergenic | 45.0% |
| !! | AGCATCGTGAGGTTGATTTG+TGG | + | chr7.4:87198520-87198539 | None:intergenic | 45.0% |
| !! | ATCGTGAGGTTGATTTGTGG+CGG | + | chr7.4:87198517-87198536 | None:intergenic | 45.0% |
| !! | ATGTTGTGGATGGTGTCGTT+TGG | + | chr7.4:87198578-87198597 | None:intergenic | 45.0% |
| !! | GGTTGAGATTGGTGATGAAG+TGG | + | chr7.4:87198650-87198669 | None:intergenic | 45.0% |
| !!! | TAATTGTTATTATTAAAATA+AGG | + | chr7.4:87201609-87201628 | None:intergenic | 5.0% |
| AACATCCTCACCTCCAACGA+AGG | - | chr7.4:87198593-87198612 | MS.gene97594:intron | 50.0% | |
| ACGCCTTCAACCTGAAGTGT+CGG | + | chr7.4:87200205-87200224 | None:intergenic | 50.0% | |
| ATCACCAATCTCAACCTCGG+TGG | - | chr7.4:87198654-87198673 | MS.gene97594:intron | 50.0% | |
| CACAAACAGCATGGTGCATG+AGG | + | chr7.4:87201364-87201383 | None:intergenic | 50.0% | |
| CTGGCAATGCCGAGATTGTT+AGG | + | chr7.4:87199574-87199593 | None:intergenic | 50.0% | |
| GACTCATGTGGGAATCGATG+CGG | - | chr7.4:87200708-87200727 | MS.gene97594:intron | 50.0% | |
| GAGTCCACCATCCCTTTCAT+TGG | + | chr7.4:87201314-87201333 | None:intergenic | 50.0% | |
| GATATCTTGGGTTTGAGCCC+AGG | - | chr7.4:87199528-87199547 | MS.gene97594:intron | 50.0% | |
| GGACAATCGCCATGTAAGCA+TGG | - | chr7.4:87200597-87200616 | MS.gene97594:intron | 50.0% | |
| GGGTATTAGTGACGAGGCTT+TGG | - | chr7.4:87201262-87201281 | MS.gene97594:intron | 50.0% | |
| GTGCTCCTCCTCAATATCTC+AGG | + | chr7.4:87199256-87199275 | None:intergenic | 50.0% | |
| GTTTGGTTGAGGAATAGCGG+CGG | + | chr7.4:87198561-87198580 | None:intergenic | 50.0% | |
| TAAGCATGGGTGCGGAGAAA+TGG | - | chr7.4:87200611-87200630 | MS.gene97594:intron | 50.0% | |
| TTTCGGTCTGCTGATGCTCT+TGG | - | chr7.4:87198866-87198885 | MS.gene97594:intron | 50.0% | |
| ! | GTTAGGCCGAACATTTTCCG+TGG | + | chr7.4:87199557-87199576 | None:intergenic | 50.0% |
| ! | TCGATGCGATAATGGTTGCG+AGG | - | chr7.4:87198697-87198716 | MS.gene97594:intron | 50.0% |
| !! | CAAGCCTGGTGGTATTGACT+TGG | + | chr7.4:87199290-87199309 | None:intergenic | 50.0% |
| !! | CTATGTAGCACCGACACTTC+AGG | - | chr7.4:87200192-87200211 | MS.gene97594:intron | 50.0% |
| !! | TGGATGGTGTCGTTTGGTTG+AGG | + | chr7.4:87198572-87198591 | None:intergenic | 50.0% |
| !! | TTGCAGGGGTATTAGTGACG+AGG | - | chr7.4:87201256-87201275 | MS.gene97594:intron | 50.0% |
| AATAGCGGCGGTTTGTGGTG+TGG | + | chr7.4:87198549-87198568 | None:intergenic | 55.0% | |
| CGGAGTGAAGAGGAGAGAGA+GGG | + | chr7.4:87198494-87198513 | None:intergenic | 55.0% | |
| CGTTGGAGGTGAGGATGTTG+TGG | + | chr7.4:87198592-87198611 | None:intergenic | 55.0% | |
| GAGGGTTGTGACACCTTCGT+TGG | + | chr7.4:87198609-87198628 | None:intergenic | 55.0% | |
| GCATTTGCAGGGCTGTCATG+GGG | - | chr7.4:87201812-87201831 | MS.gene97594:CDS | 55.0% | |
| GGAACCACCGAGGTTGAGAT+TGG | + | chr7.4:87198661-87198680 | None:intergenic | 55.0% | |
| GGAGGTGAGGATGTTGTGGA+TGG | + | chr7.4:87198588-87198607 | None:intergenic | 55.0% | |
| GGCATTTGCAGGGCTGTCAT+GGG | - | chr7.4:87201811-87201830 | MS.gene97594:CDS | 55.0% | |
| GGTCCCAAGTCAATACCACC+AGG | - | chr7.4:87199283-87199302 | MS.gene97594:intron | 55.0% | |
| GGTTGTGACACCTTCGTTGG+AGG | + | chr7.4:87198606-87198625 | None:intergenic | 55.0% | |
| GGTTTGAGCCCAGGTAACCA+CGG | - | chr7.4:87199537-87199556 | MS.gene97594:intron | 55.0% | |
| TCAAGGTAAGGGAACCACCG+AGG | + | chr7.4:87198671-87198690 | None:intergenic | 55.0% | |
| TCGCCATGTAAGCATGGGTG+CGG | - | chr7.4:87200603-87200622 | MS.gene97594:intron | 55.0% | |
| TCGGCATTGCCAGTTGAGCT+AGG | - | chr7.4:87199581-87199600 | MS.gene97594:intron | 55.0% | |
| TCTCCGCACCCATGCTTACA+TGG | + | chr7.4:87200609-87200628 | None:intergenic | 55.0% | |
| TGACACCTTCGTTGGAGGTG+AGG | + | chr7.4:87198601-87198620 | None:intergenic | 55.0% | |
| TGAGGAATAGCGGCGGTTTG+TGG | + | chr7.4:87198554-87198573 | None:intergenic | 55.0% | |
| TGTGGTGTAGCAGCATCGTG+AGG | + | chr7.4:87198531-87198550 | None:intergenic | 55.0% | |
| ! | ATTGAGGAGGAGCACACTCC+CGG | - | chr7.4:87199261-87199280 | MS.gene97594:intron | 55.0% |
| !! | CTTCAGGTTGAAGGCGTGTC+TGG | - | chr7.4:87200208-87200227 | MS.gene97594:intron | 55.0% |
| !! | GCACCGACACTTCAGGTTGA+AGG | - | chr7.4:87200199-87200218 | MS.gene97594:intron | 55.0% |
| !! | GGTGGTATTGACTTGGGACC+CGG | + | chr7.4:87199283-87199302 | None:intergenic | 55.0% |
| !! | GTGAGGTTGATTTGTGGCGG+CGG | + | chr7.4:87198514-87198533 | None:intergenic | 55.0% |
| !! | GTGGTATTGACTTGGGACCC+GGG | + | chr7.4:87199282-87199301 | None:intergenic | 55.0% |
| CGGCATTTGCAGGGCTGTCA+TGG | - | chr7.4:87201810-87201829 | MS.gene97594:CDS | 60.0% | |
| GCGGAGTGAAGAGGAGAGAG+AGG | + | chr7.4:87198495-87198514 | None:intergenic | 60.0% | |
| TTTGTGGCGGCGGAGTGAAG+AGG | + | chr7.4:87198504-87198523 | None:intergenic | 60.0% | |
| ! | TTGAGGAGGAGCACACTCCC+GGG | - | chr7.4:87199262-87199281 | MS.gene97594:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 87198434 | 87201950 | 87198434 | ID=MS.gene97594 |
| chr7.4 | mRNA | 87198434 | 87201950 | 87198434 | ID=MS.gene97594.t1;Parent=MS.gene97594 |
| chr7.4 | exon | 87201454 | 87201950 | 87201454 | ID=MS.gene97594.t1.exon1;Parent=MS.gene97594.t1 |
| chr7.4 | CDS | 87201454 | 87201950 | 87201454 | ID=cds.MS.gene97594.t1;Parent=MS.gene97594.t1 |
| chr7.4 | exon | 87199655 | 87199793 | 87199655 | ID=MS.gene97594.t1.exon2;Parent=MS.gene97594.t1 |
| chr7.4 | CDS | 87199655 | 87199793 | 87199655 | ID=cds.MS.gene97594.t1;Parent=MS.gene97594.t1 |
| chr7.4 | exon | 87199434 | 87199495 | 87199434 | ID=MS.gene97594.t1.exon3;Parent=MS.gene97594.t1 |
| chr7.4 | CDS | 87199434 | 87199495 | 87199434 | ID=cds.MS.gene97594.t1;Parent=MS.gene97594.t1 |
| chr7.4 | exon | 87198984 | 87199122 | 87198984 | ID=MS.gene97594.t1.exon4;Parent=MS.gene97594.t1 |
| chr7.4 | CDS | 87198984 | 87199122 | 87198984 | ID=cds.MS.gene97594.t1;Parent=MS.gene97594.t1 |
| chr7.4 | exon | 87198434 | 87198562 | 87198434 | ID=MS.gene97594.t1.exon5;Parent=MS.gene97594.t1 |
| chr7.4 | CDS | 87198434 | 87198562 | 87198434 | ID=cds.MS.gene97594.t1;Parent=MS.gene97594.t1 |
| Gene Sequence |
| Protein sequence |
