AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98300.t1 MTR_3g074930 90.747 616 52 3 4 615 8 622 0.0 1179
MS.gene98300.t1 MTR_3g074930 89.727 623 52 4 4 615 8 629 0.0 1173
MS.gene98300.t1 MTR_4g103520 78.125 608 123 4 14 615 23 626 0.0 1014
MS.gene98300.t1 MTR_4g103520 79.747 553 102 4 69 615 1 549 0.0 937
MS.gene98300.t1 MTR_5g045600 69.572 608 176 4 14 615 14 618 0.0 888
MS.gene98300.t1 MTR_8g063080 68.130 615 185 4 5 615 4 611 0.0 884
MS.gene98300.t1 MTR_3g074970 82.590 471 33 4 148 614 100 525 0.0 792
MS.gene98300.t1 MTR_3g074970 90.217 92 9 0 517 608 7 98 4.52e-47 174
MS.gene98300.t1 MTR_3g074960 72.245 490 73 5 4 472 8 455 0.0 704
MS.gene98300.t1 MTR_4g037670 35.517 580 306 18 61 596 79 634 2.60e-103 327
MS.gene98300.t1 MTR_1g052505 35.053 562 302 16 78 596 74 615 4.05e-101 320
MS.gene98300.t1 MTR_4g082930 28.239 602 357 19 42 594 5 580 1.95e-57 205
MS.gene98300.t1 MTR_4g082940 27.603 605 346 22 40 594 4 566 2.95e-51 187
MS.gene98300.t1 MTR_6g005650 78.205 78 15 1 189 264 10 87 7.94e-34 131
MS.gene98300.t1 MTR_4g115670 27.394 376 229 12 237 598 106 451 1.57e-27 116
MS.gene98300.t1 MTR_7g104330 26.406 409 227 16 189 585 65 411 2.76e-27 115
MS.gene98300.t1 MTR_7g104360 26.989 352 199 11 244 585 102 405 5.86e-26 111
MS.gene98300.t1 MTR_1g060360 25.791 411 235 15 189 589 57 407 8.90e-26 110
MS.gene98300.t1 MTR_6g013050 27.184 412 186 15 244 585 146 513 1.48e-25 111
MS.gene98300.t1 MTR_3g051240 26.613 372 215 12 244 609 99 418 5.09e-25 108
MS.gene98300.t1 MTR_6g013050 27.342 395 173 15 244 568 146 496 7.15e-23 103
MS.gene98300.t1 MTR_7g056403 26.066 422 202 14 244 596 146 526 1.97e-22 101
MS.gene98300.t1 MTR_3g083810 24.299 428 202 14 244 596 147 527 1.33e-21 99.4
MS.gene98300.t1 MTR_5g092360 26.230 305 183 11 318 609 149 424 3.07e-21 97.4
MS.gene98300.t1 MTR_0188s0020 25.745 369 215 14 244 591 119 449 5.77e-21 96.7
MS.gene98300.t1 MTR_3g083820 24.471 425 205 15 244 596 147 527 8.33e-21 96.7
MS.gene98300.t1 MTR_4g037105 24.658 365 214 15 244 586 113 438 6.12e-19 90.5
MS.gene98300.t1 MTR_1g112630 25.205 365 212 16 244 586 115 440 1.32e-18 89.4
MS.gene98300.t1 MTR_7g405800 93.333 30 2 0 230 259 1 30 6.49e-14 72.0
MS.gene98300.t1 MTR_2g020270 68.085 47 13 1 119 163 33 79 1.06e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98300.t1 AT5G50400 72.504 611 158 5 9 615 6 610 0.0 924
MS.gene98300.t1 AT4G24890 71.619 599 163 4 21 615 19 614 0.0 905
MS.gene98300.t1 AT1G13750 66.179 615 201 3 5 615 1 612 0.0 857
MS.gene98300.t1 AT5G50400 78.039 510 107 3 110 615 30 538 0.0 841
MS.gene98300.t1 AT1G13900 29.716 599 322 27 50 594 24 577 2.52e-58 207
MS.gene98300.t1 AT2G03450 28.501 607 335 24 43 594 15 577 1.71e-57 205
MS.gene98300.t1 AT3G52810 26.807 429 240 18 169 585 42 408 3.15e-27 115
MS.gene98300.t1 AT3G52780 25.472 424 252 15 172 585 36 405 1.61e-25 110
MS.gene98300.t1 AT4G13700 27.134 328 171 11 244 543 140 427 7.17e-24 105
MS.gene98300.t1 AT2G27190 27.297 370 198 15 244 586 118 443 1.33e-23 104
MS.gene98300.t1 AT3G20500 29.964 277 165 10 318 585 147 403 4.63e-23 102
MS.gene98300.t1 AT5G34850 24.932 369 233 12 244 598 112 450 7.74e-23 102
MS.gene98300.t1 AT3G52820 26.724 348 203 13 244 585 103 404 5.88e-22 99.4
MS.gene98300.t1 AT3G52780 26.316 361 211 14 172 525 36 348 1.59e-20 94.0
MS.gene98300.t1 AT4G36350 24.259 371 209 14 244 587 114 439 8.33e-20 93.2
MS.gene98300.t1 AT3G07130 24.764 424 202 16 244 596 140 517 1.21e-19 93.2
MS.gene98300.t1 AT1G56360 24.457 368 212 15 244 587 114 439 6.93e-19 90.5
MS.gene98300.t1 AT4G13700 26.804 291 153 10 244 506 140 398 9.34e-19 89.4
MS.gene98300.t1 AT2G16430 25.000 364 214 15 244 586 117 442 6.00e-17 84.3
MS.gene98300.t1 AT2G18130 26.408 284 170 10 336 598 168 433 1.23e-16 83.2
MS.gene98300.t1 AT2G16430 26.471 272 159 11 336 586 71 322 4.30e-16 80.5
MS.gene98300.t1 AT2G32770 22.196 419 205 15 244 585 149 523 1.38e-14 77.4
MS.gene98300.t1 AT3G07130 25.424 295 165 10 244 513 140 404 1.53e-14 77.4
MS.gene98300.t1 AT2G32770 23.392 342 176 13 244 543 68 365 1.51e-12 70.5

Find 169 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGTTTCATTTACCTTTAT+TGG 0.162930 3.1:-61316497 None:intergenic
TTTAATGCACACCTCATATT+TGG 0.186772 3.1:-61317652 None:intergenic
TAGTAGTTATACCTGATAAA+TGG 0.220072 3.1:-61319400 None:intergenic
GAGTTTCATTTACCTTTATT+GGG 0.220701 3.1:-61316496 None:intergenic
CAGTCTTCATTAGTTGGTTC+TGG 0.230728 3.1:-61315044 None:intergenic
TACCTTACTGCCAAGCAAAA+AGG 0.234836 3.1:-61313000 None:intergenic
TAATATAACTCACCAGAATT+TGG 0.238636 3.1:-61318452 None:intergenic
TGCAGGTATGCCACAGATTA+TGG 0.265751 3.1:+61319096 MS.gene98300:intron
GCGAACCTTGCTATCATATA+TGG 0.299475 3.1:-61318222 None:intergenic
ATTTCTAATTCTCATTATTC+TGG 0.313226 3.1:+61319504 MS.gene98300:CDS
GGGAAAGTTTGCAGGGGCTT+TGG 0.317516 3.1:+61319316 MS.gene98300:CDS
AGAGACAAAGACTATGGTTT+TGG 0.320936 3.1:+61319618 MS.gene98300:CDS
CATGGGAAGGGAAAGTTTGC+AGG 0.323081 3.1:+61319308 MS.gene98300:CDS
TTCTATGACACTCCAGATTC+AGG 0.324023 3.1:+61318373 MS.gene98300:CDS
CGCGGATACACAGGTGCTTT+AGG 0.325055 3.1:-61317149 None:intergenic
CTGCACGTTGATTGATCAAT+TGG 0.331585 3.1:-61316673 None:intergenic
CCGCATTCTCCACCTGAATC+TGG 0.338489 3.1:-61318385 None:intergenic
TTGGGTGATATGAATGGATT+TGG 0.345669 3.1:+61312900 MS.gene98300:CDS
GCAGATTGAATCTCACCCTT+TGG 0.349094 3.1:-61317423 None:intergenic
CATTATTCTGGCACTGTGAA+TGG 0.355958 3.1:+61319516 MS.gene98300:CDS
AAGAGTATGCCCCATTTATC+AGG 0.358857 3.1:+61319389 MS.gene98300:CDS
TTGCAACGTGTTATCATATT+CGG 0.359394 3.1:+61317852 MS.gene98300:CDS
CCCAGGTACGCCTATAGGTT+GGG 0.360573 3.1:+61317750 MS.gene98300:intron
CACCAACTTGAGGATCTGTT+TGG 0.360863 3.1:+61312881 MS.gene98300:CDS
AGTAGTTATACCTGATAAAT+GGG 0.363474 3.1:-61319399 None:intergenic
AGTCTTCATTAGTTGGTTCT+GGG 0.366107 3.1:-61315043 None:intergenic
CGTCCAATGCCACCGGGGTT+GGG 0.366293 3.1:-61316446 None:intergenic
ACCGTTGGCTGGCGCGATCC+TGG 0.370934 3.1:+61317595 MS.gene98300:CDS
CAGATTGAATCTCACCCTTT+GGG 0.371458 3.1:-61317422 None:intergenic
GGCATACTCTTTCGTAGTTA+TGG 0.374674 3.1:-61319377 None:intergenic
ACGATTAAATGTCAATGTTC+CGG 0.375358 3.1:-61317448 None:intergenic
CTGCAAACTTTCCCTTCCCA+TGG 0.377219 3.1:-61319307 None:intergenic
TCACCACAGCACCTCCTGTT+TGG 0.380045 3.1:+61319586 MS.gene98300:CDS
CTTGACATACCAATCATTAG+AGG 0.380285 3.1:-61319265 None:intergenic
AGCTGTACCATTTGTTGAAT+GGG 0.384608 3.1:+61317398 MS.gene98300:CDS
GTATGTTACTTGAAGTTTGC+AGG 0.390132 3.1:-61315083 None:intergenic
CAGGTTTCCTTGAAGAACTT+TGG 0.392296 3.1:+61317629 MS.gene98300:CDS
CCGTCCAATGCCACCGGGGT+TGG 0.396303 3.1:-61316447 None:intergenic
AGGTAAGTTAAACATGAGTT+TGG 0.397660 3.1:+61312839 MS.gene98300:CDS
CTGAGAACAAAGCCAAATTC+TGG 0.397715 3.1:+61318440 MS.gene98300:CDS
AGAATGGGTGACAGTAAAAC+TGG 0.399637 3.1:+61315016 MS.gene98300:CDS
CATGTTGTTGTTGGTGGAGG+GGG 0.399824 3.1:+61319546 MS.gene98300:CDS
TGTCTGATGGCTCTTATGTA+TGG 0.401100 3.1:+61317781 MS.gene98300:CDS
CATATGCTCAGCCCCAATAA+AGG 0.402084 3.1:+61316484 MS.gene98300:CDS
TCATAGAAGGATCCTGAGTT+TGG 0.403373 3.1:-61318358 None:intergenic
CAATAAATGCCCCAACCTAT+AGG 0.409594 3.1:-61317760 None:intergenic
TCTTCCCCAGGTACGCCTAT+AGG 0.412213 3.1:+61317745 MS.gene98300:intron
CCAACCCAGTCTTCATTAGT+TGG 0.419485 3.1:-61315050 None:intergenic
ATCTCTATAGTCCCTGGAAA+TGG 0.436173 3.1:-61319721 None:intergenic
TTCAAGGCATCTCCTTATCC+TGG 0.438321 3.1:+61317819 MS.gene98300:CDS
AAGAACTTTGGCCAAATATG+AGG 0.438770 3.1:+61317641 MS.gene98300:CDS
AATTTGGCTTTGTTCTCAGC+AGG 0.439009 3.1:-61318436 None:intergenic
CCACCCAACCCCGGTGGCAT+TGG 0.440027 3.1:+61316443 MS.gene98300:CDS
AACCTGCGCGAACCGTTGGC+TGG 0.449374 3.1:+61317584 MS.gene98300:CDS
TGAATCTGGAGTGTCATAGA+AGG 0.450964 3.1:-61318371 None:intergenic
TTTGGGCCCCATTCAACAAA+TGG 0.461006 3.1:-61317405 None:intergenic
ACCAACTTGAGGATCTGTTT+GGG 0.461280 3.1:+61312882 MS.gene98300:CDS
TATTTGGCCAAAGTTCTTCA+AGG 0.461537 3.1:-61317636 None:intergenic
GGAACAATTCATGTTGTTGT+TGG 0.462326 3.1:+61319537 MS.gene98300:CDS
GTGGAAATCACGAACGCTCT+TGG 0.464456 3.1:+61318335 MS.gene98300:intron
CTCAGCAGGGTAATAGTACA+TGG 0.467918 3.1:-61318422 None:intergenic
ATCTGTTTGGGTGATATGAA+TGG 0.471658 3.1:+61312894 MS.gene98300:CDS
AGAATAATGAGAATTAGAAA+TGG 0.472790 3.1:-61319502 None:intergenic
ATTCATGTTGTTGTTGGTGG+AGG 0.474320 3.1:+61319543 MS.gene98300:CDS
TTGGGGCATTTATTGTCTGA+TGG 0.475270 3.1:+61317768 MS.gene98300:CDS
CCCCAGGTACGCCTATAGGT+TGG 0.480019 3.1:+61317749 MS.gene98300:intron
TCTCTGAAAATACTCCAAAC+AGG 0.481381 3.1:-61319600 None:intergenic
CAGGGACTATAGAGATGTCT+TGG 0.482107 3.1:+61319728 MS.gene98300:CDS
GTATTTAGGATTGGAGTGGT+TGG 0.482977 3.1:-61316621 None:intergenic
GTGTATCCGCGCCTTGCTCA+TGG 0.485506 3.1:+61317161 MS.gene98300:CDS
AAGCTGTACCATTTGTTGAA+TGG 0.486572 3.1:+61317397 MS.gene98300:CDS
TTCATGTTGTTGTTGGTGGA+GGG 0.486891 3.1:+61319544 MS.gene98300:CDS
TTTGAAACTGCAACAAGCTT+AGG 0.488913 3.1:-61317107 None:intergenic
TCGGTTACTCCTCTAATGAT+TGG 0.490311 3.1:+61319256 MS.gene98300:CDS
TGTCTAAATCCTTGATGAGC+TGG 0.492936 3.1:-61318095 None:intergenic
ATCTACCCGTCCAATGCCAC+CGG 0.493173 3.1:-61316453 None:intergenic
TTTGTTGAATGGGGCCCAAA+GGG 0.494047 3.1:+61317408 MS.gene98300:CDS
GCTCTTATGTATGGAGTAAG+AGG 0.494084 3.1:+61317790 MS.gene98300:CDS
ACAATTCATGTTGTTGTTGG+TGG 0.495571 3.1:+61319540 MS.gene98300:CDS
CAGAACCAACTAATGAAGAC+TGG 0.498767 3.1:+61315045 MS.gene98300:CDS
CGCCAGCCAACGGTTCGCGC+AGG 0.499949 3.1:-61317586 None:intergenic
TGCAAACTTTCCCTTCCCAT+GGG 0.500947 3.1:-61319306 None:intergenic
ATTGGGGCTGAGCATATGAA+TGG 0.502132 3.1:-61316479 None:intergenic
AGAATCATGGATCGCAAGAA+TGG 0.504874 3.1:-61312958 None:intergenic
GGAGATCTGCCATATGCAAA+TGG 0.505321 3.1:+61318141 MS.gene98300:CDS
AGTTTCATTTACCTTTATTG+GGG 0.515764 3.1:-61316495 None:intergenic
CCAACCCCGGTGGCATTGGA+CGG 0.516793 3.1:+61316447 MS.gene98300:CDS
GAGTAAGAGGTATTCATTCA+AGG 0.520098 3.1:+61317803 MS.gene98300:CDS
GGTCAACCTGCGCGAACCGT+TGG 0.521129 3.1:+61317580 MS.gene98300:intron
CAACCCCGGTGGCATTGGAC+GGG 0.532592 3.1:+61316448 MS.gene98300:CDS
TGAGCAAGGCGCGGATACAC+AGG 0.538957 3.1:-61317158 None:intergenic
GAACGCTCTTGGCCAAACTC+AGG 0.539098 3.1:+61318346 MS.gene98300:CDS
CAGTAACGGAGGCAGAATCA+TGG 0.541508 3.1:-61312971 None:intergenic
TAATAGTACATGGTTTCTGC+AGG 0.541874 3.1:-61318412 None:intergenic
CAAGAAAAGTAGTGATGGAA+AGG 0.542299 3.1:+61319683 MS.gene98300:CDS
TGAGAATTAGAAATGGATGT+AGG 0.542644 3.1:-61319495 None:intergenic
GTCCTTTAGGCTGAGCGTGA+TGG 0.547365 3.1:+61318024 MS.gene98300:intron
GTCTTCATTAGTTGGTTCTG+GGG 0.549003 3.1:-61315042 None:intergenic
TCCAAGACTTTCCATGAGCA+AGG 0.549311 3.1:-61317172 None:intergenic
TCATGTTGTTGTTGGTGGAG+GGG 0.552640 3.1:+61319545 MS.gene98300:CDS
TATGACAGATGACAGTTACC+TGG 0.552868 3.1:+61317352 MS.gene98300:intron
TGTTATCATATTCGGTGACA+TGG 0.552892 3.1:+61317860 MS.gene98300:CDS
CCAATGCCACCGGGGTTGGG+TGG 0.553233 3.1:-61316443 None:intergenic
GGGTTCATTTGAAGAGCCCA+TGG 0.554005 3.1:+61319290 MS.gene98300:CDS
TCTACCCGTCCAATGCCACC+GGG 0.555257 3.1:-61316452 None:intergenic
CCAGGTACGCCTATAGGTTG+GGG 0.555647 3.1:+61317751 MS.gene98300:intron
CTCTAATGATTGGTATGTCA+AGG 0.557320 3.1:+61319266 MS.gene98300:CDS
ATTTGTTGAATGGGGCCCAA+AGG 0.559998 3.1:+61317407 MS.gene98300:CDS
TAGCAGACACTGAACATGAC+TGG 0.560714 3.1:+61319136 MS.gene98300:CDS
GCAGGGCGAGGATACAGAAT+GGG 0.561327 3.1:+61315001 MS.gene98300:intron
TATGTCATATCCACTTGTCC+AGG 0.562397 3.1:-61317370 None:intergenic
GCCTCTTCATCACCAACTTG+AGG 0.562952 3.1:+61312871 MS.gene98300:CDS
TCCTCAAGTTGGTGATGAAG+AGG 0.564410 3.1:-61312872 None:intergenic
ATTTGAAGAGCCCATGGGAA+GGG 0.565074 3.1:+61319296 MS.gene98300:CDS
GAGATGTATCCATTTGCATA+TGG 0.566529 3.1:-61318150 None:intergenic
CAAGACATCTCTATAGTCCC+TGG 0.567071 3.1:-61319727 None:intergenic
GAATATGCTAATTATCAACC+TGG 0.571971 3.1:+61318054 MS.gene98300:CDS
ACTGAACATGACTGGAGAGA+AGG 0.580541 3.1:+61319144 MS.gene98300:CDS
CACCACTGACCAGCTCATCA+AGG 0.584625 3.1:+61318086 MS.gene98300:CDS
ACCAGGATCGCGCCAGCCAA+CGG 0.585321 3.1:-61317596 None:intergenic
GAGTACAAGAAAAGTAGTGA+TGG 0.585752 3.1:+61319678 MS.gene98300:CDS
TGCAGGGCGAGGATACAGAA+TGG 0.587032 3.1:+61315000 MS.gene98300:intron
CATATTCGGTGACATGGGAA+AGG 0.587852 3.1:+61317866 MS.gene98300:CDS
ATGACAGTTACCTGGACAAG+TGG 0.589057 3.1:+61317360 MS.gene98300:CDS
ACCCAAACAGATCCTCAAGT+TGG 0.593043 3.1:-61312883 None:intergenic
CAGTTCCATATATGATAGCA+AGG 0.595584 3.1:+61318217 MS.gene98300:CDS
ATGGGAAGGGAAAGTTTGCA+GGG 0.596275 3.1:+61319309 MS.gene98300:CDS
CCAACTAATGAAGACTGGGT+TGG 0.597652 3.1:+61315050 MS.gene98300:CDS
TCCACCTGAAAATAGTGCAA+AGG 0.604263 3.1:-61316702 None:intergenic
TTTGCAGCACATCGCCCACT+CGG 0.606514 3.1:+61319237 MS.gene98300:CDS
GGTGAGATTCAATCTGCTGC+CGG 0.606800 3.1:+61317429 MS.gene98300:CDS
TGAATGGCAATCTTTGAAAG+TGG 0.607314 3.1:-61312930 None:intergenic
CATTTGAAGAGCCCATGGGA+AGG 0.608262 3.1:+61319295 MS.gene98300:CDS
CATATGGCAGATCTCCTATG+TGG 0.608314 3.1:-61318134 None:intergenic
GCCTTGCTCATGGAAAGTCT+TGG 0.610045 3.1:+61317171 MS.gene98300:CDS
AAACCTGTGTGTATAAAACC+AGG 0.612380 3.1:-61317613 None:intergenic
GTTATCATATTCGGTGACAT+GGG 0.619175 3.1:+61317861 MS.gene98300:CDS
ACATGACTGGAGAGAAGGAT+CGG 0.620114 3.1:+61319149 MS.gene98300:CDS
CCAGATTCAGGTGGAGAATG+CGG 0.625344 3.1:+61318385 MS.gene98300:CDS
ATTTGGCTTTGTTCTCAGCA+GGG 0.626371 3.1:-61318435 None:intergenic
CTCACAACCATCGTGCACAC+AGG 0.626678 3.1:-61319751 None:intergenic
ACTCCAAACAGGAGGTGCTG+TGG 0.627083 3.1:-61319589 None:intergenic
AGAACCAACTAATGAAGACT+GGG 0.631293 3.1:+61315046 MS.gene98300:CDS
AATGATTGGTATGTCAAGGA+GGG 0.632086 3.1:+61319270 MS.gene98300:CDS
ATCCTTGATGAGCTGGTCAG+TGG 0.633150 3.1:-61318088 None:intergenic
GGTTCATTTGAAGAGCCCAT+GGG 0.633987 3.1:+61319291 MS.gene98300:CDS
GACTTTCCATGAGCAAGGCG+CGG 0.635264 3.1:-61317167 None:intergenic
TCAGTGGTGTTAAGTGAACC+AGG 0.637131 3.1:-61318072 None:intergenic
TTTAATCGTAACAGCATGTG+TGG 0.639129 3.1:+61317462 MS.gene98300:CDS
TCAACATGTCCACCCAACCC+CGG 0.639236 3.1:+61316434 MS.gene98300:CDS
TATGACACTCCAGATTCAGG+TGG 0.641435 3.1:+61318376 MS.gene98300:CDS
TAATGATTGGTATGTCAAGG+AGG 0.645513 3.1:+61319269 MS.gene98300:CDS
CATAATTCAGAGTGCCAAGG+TGG 0.647479 3.1:-61319778 None:intergenic
GCTGTACCATTTGTTGAATG+GGG 0.649227 3.1:+61317399 MS.gene98300:CDS
ACGAAACATGCCATAATCTG+TGG 0.650821 3.1:-61319106 None:intergenic
TAGATAGAAAACAACAACCA+TGG 0.654457 3.1:+61319208 MS.gene98300:CDS
AAATGGATACATCTCACAGT+GGG 0.656289 3.1:+61318158 MS.gene98300:CDS
CTACATAATTCAGAGTGCCA+AGG 0.658085 3.1:-61319781 None:intergenic
GTCTTGGCCTGTGTGCACGA+TGG 0.663436 3.1:+61319744 MS.gene98300:CDS
GTAGTTATACCTGATAAATG+GGG 0.675933 3.1:-61319398 None:intergenic
CATTAGAGGAGTAACCGAGT+GGG 0.692825 3.1:-61319251 None:intergenic
CTGAAAATACTCCAAACAGG+AGG 0.700173 3.1:-61319597 None:intergenic
TGGGAAGGGAAAGTTTGCAG+GGG 0.702638 3.1:+61319310 MS.gene98300:CDS
TCATTAGAGGAGTAACCGAG+TGG 0.714971 3.1:-61319252 None:intergenic
TGGTTGTGAGAAAACCACCT+TGG 0.719747 3.1:+61319764 MS.gene98300:CDS
ACATGTCCACCCAACCCCGG+TGG 0.724016 3.1:+61316437 MS.gene98300:CDS
CTACCCGTCCAATGCCACCG+GGG 0.725369 3.1:-61316451 None:intergenic
CAAATGGATACATCTCACAG+TGG 0.732996 3.1:+61318157 MS.gene98300:CDS
TGTGCTGCAAAGATTAACCA+TGG 0.735965 3.1:-61319225 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr3.1 gene 61312834 61319794 61312834 ID=MS.gene98300
chr3.1 mRNA 61312834 61319794 61312834 ID=MS.gene98300.t1;Parent=MS.gene98300
chr3.1 exon 61312834 61313019 61312834 ID=MS.gene98300.t1.exon1;Parent=MS.gene98300.t1
chr3.1 CDS 61312834 61313019 61312834 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61315005 61315096 61315005 ID=MS.gene98300.t1.exon2;Parent=MS.gene98300.t1
chr3.1 CDS 61315005 61315096 61315005 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61316430 61316505 61316430 ID=MS.gene98300.t1.exon3;Parent=MS.gene98300.t1
chr3.1 CDS 61316430 61316505 61316430 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61316611 61316733 61316611 ID=MS.gene98300.t1.exon4;Parent=MS.gene98300.t1
chr3.1 CDS 61316611 61316733 61316611 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61317107 61317199 61317107 ID=MS.gene98300.t1.exon5;Parent=MS.gene98300.t1
chr3.1 CDS 61317107 61317199 61317107 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61317360 61317483 61317360 ID=MS.gene98300.t1.exon6;Parent=MS.gene98300.t1
chr3.1 CDS 61317360 61317483 61317360 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61317581 61317662 61317581 ID=MS.gene98300.t1.exon7;Parent=MS.gene98300.t1
chr3.1 CDS 61317581 61317662 61317581 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61317755 61317887 61317755 ID=MS.gene98300.t1.exon8;Parent=MS.gene98300.t1
chr3.1 CDS 61317755 61317887 61317755 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61318033 61318238 61318033 ID=MS.gene98300.t1.exon9;Parent=MS.gene98300.t1
chr3.1 CDS 61318033 61318238 61318033 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61318336 61318461 61318336 ID=MS.gene98300.t1.exon10;Parent=MS.gene98300.t1
chr3.1 CDS 61318336 61318461 61318336 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61319101 61319410 61319101 ID=MS.gene98300.t1.exon11;Parent=MS.gene98300.t1
chr3.1 CDS 61319101 61319410 61319101 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
chr3.1 exon 61319495 61319794 61319495 ID=MS.gene98300.t1.exon12;Parent=MS.gene98300.t1
chr3.1 CDS 61319495 61319794 61319495 ID=cds.MS.gene98300.t1;Parent=MS.gene98300.t1
Gene Sequence

>MS.gene98300

ATGGAAGGTAAGTTAAACATGAGTTTGGTAATATTGTGCCTCTTCATCACCAACTTGAGGATCTGTTTGGGTGATATGAATGGATTTGGAGAGCAGCCACTTTCAAAGATTGCCATTCACAAAACCATTCTTGCGATCCATGATTCTGCCTCCGTTACTGCTTCCCCCTTTTTGCTTGGCAGTAAGGTAGTATCTTCTACCCCGTTTCATTAATTTAACCTATTTATTTTGTTCTCACTAGCATGACATTAACATGCATGTTTTTCCACTTTTATTAGCAATGAATGATAATATGTTACAAAACAATTAAGTGAAATGTTAAATTGGAAGAAAAAATGTTACACCAAAATAGTTAAGTAATTCATTAATAGAAATTTTGTCTTGTAAATATAAGCTTTTACTTTTGTCTTAGTAATAATCACACCATTTTTTGATACAAACTTACTAATTTTAACACTTTAACCAATATCTCAAGGGCATTCATTAGCATTCTCCTTCCTTTATATATTGATATAGATTTATCAACAAATGTTTTGATTAAAAAAAATAACTATATTATTTTTTGAGAGAACTAATGAAATTTAGTTTTTTGAGGGGAGAATTAATGAAAGTTAAATAGTACTTGTTTCCCTCAACAAAACAAAACAGAAAATAGTACTTGATCAAGACATTTTATTTCTGCACAACTACACCCCTTGATTTTACTTTCTACACCTGTTTGAGGCGATTTGAGCTTGGTATTTTTCTCCAGCCAGAGAAAAACGATACAATTACTGTAATTTTAGCTAGTACTAGCATGAAAATAGTTTTTTTTTTTAGAGAAGCATGAAAATAGTTTAAAAGATGCAAAATTGTTTGCATGTAGCTCATAAATCTTTTATATGTTCGGTTTTCGTTGATTAGTGTCACATTTATTAAAATAACTATAATTTAAAATAAATCTTGTTTTTAATATTTTATAGGCTTAAATGCGCTTTTGGTCCCTTAACTATTTATTTGATATCGCTTTGGTCCCTTAACTAAAAAAAAGATTGTTTTGGTATTTTATCTTTATCTCCGTTACCTGTTTTGGTCCCTTCCGTTAAATAAATTCAAAAAAACGTTAGGGTTTGTACTATTCATCTTCTTCCTTCTCCTTCCATCCTGTTCTTCATGATCTTCATCATCAACAACACACCAATCCATATTTTGGGACCAAAACGATACCAAATAAATACTTAAGGGATCAAAAGAACATTTAAGTTTTTTTTTTTATCATCTTCTTCATCTTCATCAAAACTCATATTCATCAATTAAATCCAGAAAAAAAAAAAAAAACACAGAATGCTCATATTTGGAAGAGTTATGCATAACGCTCAAATCAAAACTCATATTTGGCTTAAACTCATCAAAATAAAAAAAAAAACACATAATGCTCAAATCAAAACTCAAATTTGGCTTAAACTCGTATCAAAATCAAAACTTCAAAAGAGTTATGCATAATGCTCAAATTTGAAAAAACCTCCTTTAGAAAAACCCATCCTTCAAAAATTCGAAACAGGAGAAGAGTAAGGTTCTGCAGAATGAATTTGAAACAGGAAAAGAGTAAGATTATGCAGTGAAAATTAAGGTTCAAAAATTTGAGTTTTGCGAGAAGAGATTGAGGTTGTAAACAGGAGAAGATTTGAGTTTGAGATTCAACAAAGGATTACTTAAAGAAGGAGGTTTAAGTTTGAGATTCAACACAAGACACATAAGAGGAAAAGATTGAAGGATATGCTATTTTTTAGTTTTTTTTTGGATTATTTTCTGTGTTTTTTTTTCTGGATTTAATTGATGAATATGAGTTTTGATGAAGATGAAGAAGAAAAACTTAAATGTTCTTTTGGTCCCTTAATTATTTATTTGGTATCGTTTTGGTCCCAAAATCTGGGTTTAGTTGATGAATGATGAAGGTCTGGGTTTAGTTGATGAATGATGAAGGTTTTGAGAAGGAAGAAGATGAATAGTACAAACCCTAACGTTTTTTTGAATTTATTTAACGGAAAGGACCAAAACAGGTAACAGAGATAAAGATAAAATACTAAAACAATCTTTTTTTTAGTTAAGGGACCAAAGCGATACCAAATAAATAGTTAAGGGACCAAAAGCGCATTTAAGCCTATTTTACAGTTGTACTCATACTATTGCAGGGCGAGGATACAGAATGGGTGACAGTAAAACTGGAGTCCCCAGAACCAACTAATGAAGACTGGGTTGGAGTTTTTACTCCTGCAAACTTCAAGTAACATACAACAATTCTCTCTCTCTCTCTTTCTCACTTTTAATATTGTTCTTTAAACACATTTTTCAAAAACATCATATCATACATATACTAAGACACTTGAGTGAATTTTGTATGAATCATATTGGTACATATTCACAATGTTAACACAGTCATGAAAAAGTACATTGACAATAGGAGTTTTTTGATTCCTCTTATGTTTTCTCTCTCTGTTTTATAATTGGAATAAAAAAAAAGAACTTGTAGTAAGTTTGCTCTCTAAAATTCAGCTCCATAACATTGCATGGTAGCCATGTGGAAAGATATGCCTTGGACTAACACAGAAGGAGTTAGTCACATGATCACACAACCTTATCTACACTTAGTCACATGAAACACCTTGGATGTAGGCAACATTCTGAATATGTCTAAAACAAAACCAACGTGAGTTAACTTACGGTGTTTGGAACGTTACTTAAGTTACGTAGGTTTTATTTCAATGTGATTTAAGTCATGTTGGGTTTAATATCTGCGCGACTTAAGTCACGTGGAGAGTATTTTAGGAAGTTTGATTGGGAGCAAGCAAATCTTGATGGGAGAAGAGCAATTTTCTTTATTTTACTTAATGACCCCTTAATTTTATGTTTGGGGTCCAAATTTTGAACTTATTTTTTGGGACTGACGGTCGTCCTCCTCATCCTGCCTCAGATACGGCCCTTGTCATACCTATGTCTAGTAAACCTTATGTCATGTTCCTTAAATCCAATTTATCCAATGAGAGTTTCTTTTTTCACTCGCACGATTCTTAAGAACCGTTCGCATCTAAAAAAGGGATGGGAGGGGAGAGTCTTGAAGGAAAAAAAAATGAAGAATGAAGTGGATATAACAAAATATTTTGAAAGGGGAGGGTTTAGGAGTTTATTTTTCTTCATGGTACAAAATTCTTCCAACTTAAAACTTGTTTTTGTCGACAAATTCTAATTTAGAATTTAAAAAATTGTATTGAAGGATGATTTTGGAGGATTTTAGAAGATTAGGATAAATTTTCCAAATTTAATTTTTTTTTTAAGGAAGGATAAATTTTCCAAATTTAATAGGAGTATATATTGTTATAATATTTTCAATATTAAAAATATATTAATCATAAGTATTTATTTATCATTTTCTACAAAACATTTCAAAAAAATAATCAATTCTCTAGTCTTTTCGCTACTCCCTCCTTCCCGAAGTTCTCCCATCCTTTTTCCTCCAAACTCTCCAACATCGCCTAAAGAGTCATGGCCATAAACTATGCATATATCTCACTATTATGGCTGAAAAACGAACTAAAGGAAATATATTATTGAAATCACAGTTCGTCAACATGTCCACCCAACCCCGGTGGCATTGGACGGGTAGATACTCCATTCATATGCTCAGCCCCAATAAAGGTAAATGAAACTCCATCTCATATAAATTGTGTATGAAATGAATGAACAACATAACAAGGATGAACCTCTCATGTGTGTTGATTATAATTTGAATCTTTGTAATAGTACAAGTATGCCAACCACTCCAATCCTAAATACAAAAAGACTGGGAAAACTACTTTGAAGTTCCAATTGATCAATCAACGTGCAGATTTCTCCTTTGCACTATTTTCAGGTGGATTATCCAATGTAAGTCATATCTACTGATCTTTTTTTTTTTTTACTATCTTTAAATTTTTTTGTCTTTGCTTAGATGTAGATTTCACATTTAAAAAATCAGTGTCATATACTAGTGCTATTAGAGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGAAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAACAGGGTAAGGCTGTGTACAATACACCAAATGGTGGGACCCCTTCCCAGACCCTGCATATGCGGGAGCTCTAGTGCACCGGGTTGCCCCTTTATATACTAGTGCTATTAGTATGCAATGATCCTTATTCAATTGTATGCTAACAAGTGTTCATTTGATTGAGCATTGCAGCCTAAGCTTGTTGCAGTTTCAAACTTCATTGCATTTGCAAATCCTAAAGCACCTGTGTATCCGCGCCTTGCTCATGGAAAGTCTTGGAATGAAGTAAGTTTATCTAGTCAATTTAATTACATACTAGTTGCCTAACATTTCCTAATTATACATTGGTTCTTATCATCTAAAACTTTTGTAATTGAAATTGCTGCATGAATCGTCTAACTTAAACGTTTAGAATAATGATAAGAAATTTGTTCTTCTATGACAGATGACAGTTACCTGGACAAGTGGATATGACATAAGTGAAGCTGTACCATTTGTTGAATGGGGCCCAAAGGGTGAGATTCAATCTGCTGCCGGAACATTGACATTTAATCGTAACAGCATGTGTGGTATGGATTAATACATCGTAACTCAATTTCATACCTTATTATCTTTTTCTAAAAATGATTCTCAACATATAATGAGGGACATTTTGTTAATCTGTAGGTCAACCTGCGCGAACCGTTGGCTGGCGCGATCCTGGTTTTATACACACAGGTTTCCTTGAAGAACTTTGGCCAAATATGAGGTGTGCATTAAACTATATTTATGTTTATGAGACTATAATTGATAAGTAGAGTTCTGAAAGCTTAGCTACCTTCCCTCCCTATTCTTCCCCAGGTACGCCTATAGGTTGGGGCATTTATTGTCTGATGGCTCTTATGTATGGAGTAAGAGGTATTCATTCAAGGCATCTCCTTATCCTGGACAAAACTCATTGCAACGTGTTATCATATTCGGTGACATGGGAAAGGTAGCGTCGATTATTTAATGTTTATAACATTGGAAAGATTGATCACCTAACTAGATAATTTTCCAACTTTTTATCTAAAAACTCTAATTTGAAGCTTGATTTGTACAATGGGGAGAACACTTATTTTGGTTCACATGTCCTTTAGGCTGAGCGTGATGGTTCAAATGAATATGCTAATTATCAACCTGGTTCACTTAACACCACTGACCAGCTCATCAAGGATTTAGACAATATTGACATTGTTTTCCACATAGGAGATCTGCCATATGCAAATGGATACATCTCACAGTGGGATCAATTCACAGCTCAAGTACAACAAATTTCATCAACAGTTCCATATATGATAGCAAGGTTCGCTTGCTTGCAATCATTTTAGGCCATAGAAATTTGAATTGAGTGTTACATATTCTTTTAGACTGAAAGGATATCACATTTATTCATACTGCAGTGGAAATCACGAACGCTCTTGGCCAAACTCAGGATCCTTCTATGACACTCCAGATTCAGGTGGAGAATGCGGAGTTCCTGCAGAAACCATGTACTATTACCCTGCTGAGAACAAAGCCAAATTCTGGTGAGTTATATTAATCTAAATGTAAACCATGACATGTTTAGCATTAATAAAACAGATTTTCTTTTCTCAACTGAATTTTTCACTACTTGGTCCAAGATAGTACGTATGATCCTGACCAATGGTTGCGTAATTATTTCTATAATTTCATTGTTGGAACAAAGTATGGTTTTGTGTTGATTTTTGAAAGAATGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGAGATTGAGATTAAGAGATTAAGAGTTTGAGAATAATGAGAGGAGTAATATTGCTTTCTCAAATTCAGTTACAAAATGCATACAACATAGAAGCTATTTATAGGCATGGTTTTGTTACAATAGATTGCTTAACACGCAAGCAATGCATATAACAAACCCTAACTGTTTTATTTGCAAGCTAAACAAACTTAAAACTAACTTCTAACAAACTTAACAAACTGAATTAACACATTCCAGCATTCATGATATCTGCAAAAGATACATTTTCATCCTTATAGTTCATGGAATCATGGTGCAGTTTCTAGTTTTTGCAAGTGAAAAATAAACTAGGAGGTACTATTTTTCCATTCCTAATTAATGACGAAAATTGGAAATATGCAGGTATGCCACAGATTATGGCATGTTTCGTTTCTGTATAGCAGACACTGAACATGACTGGAGAGAAGGATCGGAACAGTACAAATTCATCGAGCATTGCCTTGCAACAGTAGATAGAAAACAACAACCATGGTTAATCTTTGCAGCACATCGCCCACTCGGTTACTCCTCTAATGATTGGTATGTCAAGGAGGGTTCATTTGAAGAGCCCATGGGAAGGGAAAGTTTGCAGGGGCTTTGGCAAAAGTATAAAGTAGACATTGCATTTTATGGTCACGTCCATAACTACGAAAGAGTATGCCCCATTTATCAGGTATAACTACTATTGTCACATTTCAGTTAAAGCGAGATGTGCTGTCTATATTAAGTACTTGATTGTTACAGTTTTTACCGACAGCCTACATCCATTTCTAATTCTCATTATTCTGGCACTGTGAATGGAACAATTCATGTTGTTGTTGGTGGAGGGGGAAGTCACTTGTCAGACTTCACCACAGCACCTCCTGTTTGGAGTATTTTCAGAGACAAAGACTATGGTTTTGGCAAACTGACAGCATTTAATCACTCATATCTCTTGTTTGAGTACAAGAAAAGTAGTGATGGAAAGGTCTATGATTCTTTTACCATTTCCAGGGACTATAGAGATGTCTTGGCCTGTGTGCACGATGGTTGTGAGAAAACCACCTTGGCACTCTGA
Protein sequence

>MS.gene98300.t1

MEGKLNMSLVILCLFITNLRICLGDMNGFGEQPLSKIAIHKTILAIHDSASVTASPFLLGSKGEDTEWVTVKLESPEPTNEDWVGVFTPANFNSSTCPPNPGGIGRVDTPFICSAPIKYKYANHSNPKYKKTGKTTLKFQLINQRADFSFALFSGGLSNPKLVAVSNFIAFANPKAPVYPRLAHGKSWNEMTVTWTSGYDISEAVPFVEWGPKGEIQSAAGTLTFNRNSMCGQPARTVGWRDPGFIHTGFLEELWPNMRYAYRLGHLLSDGSYVWSKRYSFKASPYPGQNSLQRVIIFGDMGKAERDGSNEYANYQPGSLNTTDQLIKDLDNIDIVFHIGDLPYANGYISQWDQFTAQVQQISSTVPYMIASGNHERSWPNSGSFYDTPDSGGECGVPAETMYYYPAENKAKFWYATDYGMFRFCIADTEHDWREGSEQYKFIEHCLATVDRKQQPWLIFAAHRPLGYSSNDWYVKEGSFEEPMGRESLQGLWQKYKVDIAFYGHVHNYERVCPIYQPTSISNSHYSGTVNGTIHVVVGGGGSHLSDFTTAPPVWSIFRDKDYGFGKLTAFNHSYLLFEYKKSSDGKVYDSFTISRDYRDVLACVHDGCEKTTLAL