Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98405.t1 | XP_013463678.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 3.80E-136 | 494.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98405.t1 | Q9LRP1 | 81.8 | 264 | 47 | 1 | 1 | 263 | 1 | 264 | 1.2e-114 | 414.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98405.t1 | A0A072V8M0 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 2.7e-136 | 494.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene98405 | MS.gene46386 | PPI |
MS.gene98405 | MS.gene011609 | PPI |
MS.gene98405 | MS.gene61249 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98405.t1 | MTR_2g045960 | 97.358 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 0.0 | 533 |
MS.gene98405.t1 | MTR_4g123910 | 88.302 | 265 | 31 | 0 | 1 | 265 | 1 | 265 | 9.87e-167 | 462 |
MS.gene98405.t1 | MTR_4g099140 | 63.813 | 257 | 88 | 2 | 7 | 261 | 7 | 260 | 6.19e-106 | 308 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98405.t1 | AT3G17440 | 81.818 | 264 | 47 | 1 | 1 | 263 | 1 | 264 | 3.82e-153 | 427 |
MS.gene98405.t1 | AT1G48240 | 79.545 | 264 | 53 | 1 | 1 | 263 | 1 | 264 | 5.46e-150 | 419 |
MS.gene98405.t1 | AT3G17440 | 81.221 | 213 | 39 | 1 | 1 | 212 | 1 | 213 | 4.76e-124 | 352 |
MS.gene98405.t1 | AT1G48240 | 81.221 | 213 | 39 | 1 | 52 | 263 | 1 | 213 | 3.78e-121 | 345 |
MS.gene98405.t1 | AT2G35190 | 66.795 | 259 | 79 | 3 | 7 | 261 | 7 | 262 | 2.47e-110 | 319 |
Find 58 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAGCTGTTTGTTCACTTC+TGG | 0.121538 | 2.4:+44959996 | None:intergenic |
CTTTCAAGGTTGTGGCAGTT+TGG | 0.234955 | 2.4:+44956189 | None:intergenic |
CTTTAATCTTGTCCAACTTC+TGG | 0.246151 | 2.4:+44960564 | None:intergenic |
CAGCTGATTACTTTGTCTAT+TGG | 0.268705 | 2.4:+44960538 | None:intergenic |
GGAGCTGGAGGCGCCAATCC+TGG | 0.275218 | 2.4:+44955313 | None:intergenic |
TTTCAAGGTTGTGGCAGTTT+GGG | 0.302727 | 2.4:+44956190 | None:intergenic |
TGAGCTGTTTGTTCACTTCT+GGG | 0.306392 | 2.4:+44959997 | None:intergenic |
TGAACTTACTTGGCCTTTCA+AGG | 0.384292 | 2.4:+44956175 | None:intergenic |
CCTCAGGTGGAGCAGATTCA+TGG | 0.410127 | 2.4:-44963249 | MS.gene98405:CDS |
AATCAAGAACTTATAAATGC+TGG | 0.421675 | 2.4:-44956361 | MS.gene98405:CDS |
TTCCGATCTCCTTCACAAGC+TGG | 0.426038 | 2.4:+44955998 | None:intergenic |
AAAAGCCTCCTGGTCGGAGC+TGG | 0.446002 | 2.4:+44955298 | None:intergenic |
TACTTGGCCTTTCAAGGTTG+TGG | 0.454866 | 2.4:+44956181 | None:intergenic |
CAGAAATGGCTTCCAGAAGT+TGG | 0.457785 | 2.4:-44960576 | MS.gene98405:CDS |
TCCGATCTCCTTCACAAGCT+GGG | 0.461441 | 2.4:+44955999 | None:intergenic |
AATTCAGTTCTCAATTAAGA+AGG | 0.463648 | 2.4:-44956025 | MS.gene98405:CDS |
GAGCTGGAGGCGCCAATCCT+GGG | 0.464083 | 2.4:+44955314 | None:intergenic |
AATTGCCATCATTGTTGTAA+AGG | 0.471683 | 2.4:-44955831 | MS.gene98405:intron |
GACGATGGATGAAACTGATC+AGG | 0.474838 | 2.4:-44956332 | MS.gene98405:CDS |
CGTGAAATTAAAGATGAAGA+TGG | 0.477484 | 2.4:-44960029 | MS.gene98405:CDS |
CAATTACACCACAGACGATA+AGG | 0.479487 | 2.4:+44955849 | None:intergenic |
AGCCTCCTGGTCGGAGCTGG+AGG | 0.485326 | 2.4:+44955301 | None:intergenic |
GAAAATGTTCAATTAGCATC+AGG | 0.489426 | 2.4:-44958355 | MS.gene98405:intron |
AGCTGTTTGTTCACTTCTGG+GGG | 0.490045 | 2.4:+44959999 | None:intergenic |
GGCTATAGAAAGATCTAAGC+AGG | 0.501232 | 2.4:-44956311 | MS.gene98405:intron |
CAATAGACAAAGTAATCAGC+TGG | 0.502517 | 2.4:-44960537 | MS.gene98405:CDS |
ATCAAGAACTTATAAATGCT+GGG | 0.502792 | 2.4:-44956360 | MS.gene98405:CDS |
CAAACTGCCACAACCTTGAA+AGG | 0.503625 | 2.4:-44956188 | MS.gene98405:CDS |
TGATACCTTTACAACAATGA+TGG | 0.507547 | 2.4:+44955826 | None:intergenic |
GTACATCAAACAATTGAAGT+AGG | 0.511074 | 2.4:-44956215 | MS.gene98405:CDS |
TGGCGCCTCCAGCTCCGACC+AGG | 0.516723 | 2.4:-44955306 | MS.gene98405:CDS |
GAGCTGTTTGTTCACTTCTG+GGG | 0.520474 | 2.4:+44959998 | None:intergenic |
TCTCTAATATCTTTGTTGTG+TGG | 0.527853 | 2.4:+44955340 | None:intergenic |
TCGCCGGCGACAATGGCTAC+AGG | 0.530326 | 2.4:-44963285 | None:intergenic |
GGAAGATGAGGGAGTGCAAA+GGG | 0.533469 | 2.4:-44960502 | MS.gene98405:intron |
TATTAGAGATATCCCAGGAT+TGG | 0.535138 | 2.4:-44955326 | MS.gene98405:CDS |
TGTGAAGGAGATCGGAAGAA+AGG | 0.540410 | 2.4:-44955992 | MS.gene98405:intron |
TCCCAGCTTGTGAAGGAGAT+CGG | 0.543339 | 2.4:-44956000 | MS.gene98405:CDS |
AGGCTTGCAGATGACTCCTC+AGG | 0.544493 | 2.4:-44963265 | MS.gene98405:CDS |
CAAGGAACTAAATTCATATG+TGG | 0.554861 | 2.4:-44958761 | MS.gene98405:CDS |
CAATGATGAAAAGCAATCAA+TGG | 0.557115 | 2.4:-44959976 | MS.gene98405:intron |
TTTCTGTTCCTTATCGTCTG+TGG | 0.557552 | 2.4:-44955857 | MS.gene98405:CDS |
AAGAACTCACAGGGAAGATG+AGG | 0.558682 | 2.4:-44960514 | MS.gene98405:CDS |
AATCAGCTGGAAGAACTCAC+AGG | 0.559325 | 2.4:-44960524 | MS.gene98405:CDS |
TACATCAAACAATTGAAGTA+GGG | 0.569693 | 2.4:-44956214 | MS.gene98405:CDS |
CGCCTCCAGCTCCGACCAGG+AGG | 0.578460 | 2.4:-44955303 | MS.gene98405:CDS |
CCTTGCATACAAAAGCCTCC+TGG | 0.583817 | 2.4:+44955288 | None:intergenic |
GAAGGCTTCCCAGCTTGTGA+AGG | 0.586477 | 2.4:-44956007 | MS.gene98405:CDS |
GGCAGGGTCAAGTCAACCCA+TGG | 0.588474 | 2.4:-44958383 | MS.gene98405:CDS |
AATAGGTACATGAGTACACT+TGG | 0.600694 | 2.4:-44958436 | MS.gene98405:intron |
CCATGAATCTGCTCCACCTG+AGG | 0.609029 | 2.4:+44963249 | None:intergenic |
CTTGCAGATGACTCCTCAGG+TGG | 0.612756 | 2.4:-44963262 | MS.gene98405:CDS |
GGGAAGATGAGGGAGTGCAA+AGG | 0.614547 | 2.4:-44960503 | MS.gene98405:CDS |
AGAACTCACAGGGAAGATGA+GGG | 0.620040 | 2.4:-44960513 | MS.gene98405:CDS |
AAAGATATTAGAGATATCCC+AGG | 0.626294 | 2.4:-44955331 | MS.gene98405:CDS |
AAATGCTGGGACGAAGACGA+TGG | 0.653074 | 2.4:-44956347 | MS.gene98405:CDS |
GCATACAAAAGCCTCCTGGT+CGG | 0.681321 | 2.4:+44955292 | None:intergenic |
ATCAGCTGGAAGAACTCACA+GGG | 0.683497 | 2.4:-44960523 | MS.gene98405:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 44955279 | 44963295 | 44955279 | ID=MS.gene98405 |
chr2.4 | mRNA | 44955279 | 44963295 | 44955279 | ID=MS.gene98405.t1;Parent=MS.gene98405 |
chr2.4 | exon | 44963219 | 44963295 | 44963219 | ID=MS.gene98405.t1.exon1;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44963219 | 44963295 | 44963219 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44960503 | 44960595 | 44960503 | ID=MS.gene98405.t1.exon2;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44960503 | 44960595 | 44960503 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44959977 | 44960070 | 44959977 | ID=MS.gene98405.t1.exon3;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44959977 | 44960070 | 44959977 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44958748 | 44958785 | 44958748 | ID=MS.gene98405.t1.exon4;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44958748 | 44958785 | 44958748 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44958356 | 44958453 | 44958356 | ID=MS.gene98405.t1.exon5;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44958356 | 44958453 | 44958356 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44956312 | 44956391 | 44956312 | ID=MS.gene98405.t1.exon6;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44956312 | 44956391 | 44956312 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44956184 | 44956240 | 44956184 | ID=MS.gene98405.t1.exon7;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44956184 | 44956240 | 44956184 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44955993 | 44956085 | 44955993 | ID=MS.gene98405.t1.exon8;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44955993 | 44956085 | 44955993 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44955832 | 44955906 | 44955832 | ID=MS.gene98405.t1.exon9;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44955832 | 44955906 | 44955832 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
chr2.4 | exon | 44955279 | 44955371 | 44955279 | ID=MS.gene98405.t1.exon10;Parent=MS.gene98405.t1 |
chr2.4 | CDS | 44955279 | 44955371 | 44955279 | ID=cds.MS.gene98405.t1;Parent=MS.gene98405.t1 |
Gene Sequence |
Protein sequence |