Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98458.t1 | XP_024639230.1 | 65.7 | 744 | 195 | 4 | 3 | 688 | 5 | 746 | 4.50E-266 | 927.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98458.t1 | A0A396HN66 | 65.7 | 744 | 195 | 4 | 3 | 688 | 5 | 746 | 3.3e-266 | 927.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene98458 | MS.gene85146 | PPI |
MS.gene36347 | MS.gene98458 | PPI |
MS.gene98458 | MS.gene069865 | PPI |
MS.gene36348 | MS.gene98458 | PPI |
MS.gene85145 | MS.gene98458 | PPI |
MS.gene98458 | MS.gene76530 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98458.t1 | MTR_5g028190 | 80.360 | 555 | 87 | 2 | 137 | 689 | 1 | 535 | 0.0 | 899 |
MS.gene98458.t1 | MTR_5g028130 | 73.746 | 339 | 85 | 2 | 353 | 688 | 1 | 338 | 1.34e-175 | 504 |
MS.gene98458.t1 | MTR_5g028930 | 43.566 | 645 | 315 | 14 | 60 | 686 | 3 | 616 | 2.17e-152 | 456 |
MS.gene98458.t1 | MTR_5g028450 | 65.763 | 295 | 95 | 2 | 395 | 685 | 2 | 294 | 3.93e-124 | 371 |
MS.gene98458.t1 | MTR_5g028110 | 75.648 | 193 | 29 | 1 | 497 | 689 | 2 | 176 | 2.71e-93 | 286 |
MS.gene98458.t1 | MTR_2g438740 | 34.489 | 577 | 317 | 16 | 120 | 687 | 44 | 568 | 8.33e-88 | 286 |
MS.gene98458.t1 | MTR_5g091220 | 34.421 | 613 | 325 | 14 | 117 | 689 | 30 | 605 | 4.25e-85 | 280 |
MS.gene98458.t1 | MTR_2g438440 | 30.275 | 654 | 382 | 15 | 62 | 685 | 76 | 685 | 2.16e-71 | 246 |
MS.gene98458.t1 | MTR_2g438400 | 30.915 | 579 | 345 | 14 | 120 | 689 | 16 | 548 | 1.27e-68 | 235 |
MS.gene98458.t1 | MTR_2g438720 | 29.718 | 673 | 387 | 20 | 49 | 685 | 69 | 691 | 2.00e-68 | 238 |
MS.gene98458.t1 | MTR_2g438760 | 29.364 | 613 | 347 | 16 | 61 | 672 | 15 | 542 | 8.79e-68 | 233 |
MS.gene98458.t1 | MTR_2g438700 | 29.690 | 677 | 379 | 19 | 49 | 684 | 68 | 688 | 4.15e-67 | 234 |
MS.gene98458.t1 | MTR_3g055310 | 32.582 | 488 | 291 | 11 | 203 | 675 | 8 | 472 | 5.59e-67 | 228 |
MS.gene98458.t1 | MTR_3g055310 | 32.762 | 467 | 282 | 10 | 224 | 675 | 21 | 470 | 8.93e-67 | 228 |
MS.gene98458.t1 | MTR_3g455790 | 30.783 | 575 | 348 | 14 | 117 | 668 | 32 | 579 | 1.17e-66 | 230 |
MS.gene98458.t1 | MTR_3g055310 | 32.762 | 467 | 282 | 10 | 224 | 675 | 48 | 497 | 1.87e-66 | 228 |
MS.gene98458.t1 | MTR_6g017215 | 59.783 | 184 | 74 | 0 | 497 | 680 | 6 | 189 | 3.80e-66 | 218 |
MS.gene98458.t1 | MTR_3g055310 | 33.806 | 423 | 251 | 8 | 265 | 675 | 39 | 444 | 7.90e-66 | 224 |
MS.gene98458.t1 | MTR_5g028510 | 41.194 | 335 | 163 | 6 | 22 | 333 | 6 | 329 | 2.04e-65 | 219 |
MS.gene98458.t1 | MTR_3g055310 | 34.230 | 409 | 240 | 8 | 279 | 675 | 1 | 392 | 1.10e-64 | 220 |
MS.gene98458.t1 | MTR_2g438640 | 27.692 | 715 | 429 | 16 | 15 | 685 | 20 | 690 | 5.66e-64 | 225 |
MS.gene98458.t1 | MTR_5g028690 | 52.500 | 200 | 90 | 1 | 492 | 686 | 36 | 235 | 1.24e-63 | 211 |
MS.gene98458.t1 | MTR_3g055310 | 35.866 | 329 | 197 | 5 | 350 | 675 | 12 | 329 | 2.48e-60 | 206 |
MS.gene98458.t1 | MTR_2g438640 | 26.993 | 715 | 408 | 16 | 15 | 685 | 20 | 664 | 6.17e-60 | 214 |
MS.gene98458.t1 | MTR_3g452020 | 29.401 | 568 | 364 | 13 | 117 | 667 | 32 | 579 | 1.90e-58 | 208 |
MS.gene98458.t1 | MTR_3g452020 | 30.637 | 408 | 263 | 7 | 270 | 667 | 6 | 403 | 1.25e-46 | 171 |
MS.gene98458.t1 | MTR_5g028900 | 51.534 | 163 | 63 | 3 | 499 | 657 | 4 | 154 | 8.06e-46 | 160 |
MS.gene98458.t1 | MTR_5g028840 | 43.590 | 195 | 105 | 1 | 497 | 686 | 2 | 196 | 8.44e-43 | 154 |
MS.gene98458.t1 | MTR_2g020510 | 35.354 | 297 | 181 | 4 | 374 | 669 | 369 | 655 | 1.61e-39 | 155 |
MS.gene98458.t1 | MTR_2g020510 | 26.126 | 222 | 132 | 8 | 127 | 335 | 15 | 217 | 2.34e-11 | 67.4 |
MS.gene98458.t1 | MTR_3g058570 | 33.660 | 306 | 182 | 4 | 393 | 686 | 83 | 379 | 7.20e-38 | 145 |
MS.gene98458.t1 | MTR_2g017930 | 25.538 | 650 | 385 | 18 | 126 | 688 | 9 | 646 | 2.25e-37 | 149 |
MS.gene98458.t1 | MTR_2g020470 | 33.333 | 297 | 164 | 5 | 377 | 669 | 371 | 637 | 7.63e-35 | 141 |
MS.gene98458.t1 | MTR_2g020470 | 27.027 | 222 | 130 | 8 | 127 | 335 | 15 | 217 | 7.44e-12 | 68.9 |
MS.gene98458.t1 | MTR_2g438640 | 41.579 | 190 | 109 | 2 | 497 | 685 | 399 | 587 | 8.45e-34 | 137 |
MS.gene98458.t1 | MTR_5g085360 | 31.962 | 316 | 186 | 8 | 381 | 678 | 418 | 722 | 7.98e-33 | 135 |
MS.gene98458.t1 | MTR_2g020450 | 34.314 | 306 | 186 | 5 | 377 | 678 | 372 | 666 | 9.74e-33 | 135 |
MS.gene98458.t1 | MTR_5g028830 | 35.060 | 251 | 109 | 4 | 299 | 496 | 39 | 288 | 1.91e-32 | 127 |
MS.gene98458.t1 | MTR_3g050500 | 29.341 | 334 | 215 | 6 | 366 | 681 | 389 | 719 | 5.69e-32 | 132 |
MS.gene98458.t1 | MTR_3g051060 | 30.034 | 293 | 200 | 3 | 395 | 683 | 435 | 726 | 2.33e-31 | 130 |
MS.gene98458.t1 | MTR_5g085350 | 33.110 | 299 | 193 | 5 | 395 | 689 | 438 | 733 | 3.45e-29 | 124 |
MS.gene98458.t1 | MTR_5g085350 | 33.110 | 299 | 193 | 5 | 395 | 689 | 425 | 720 | 3.73e-29 | 124 |
MS.gene98458.t1 | MTR_5g085340 | 32.333 | 300 | 196 | 5 | 395 | 689 | 444 | 741 | 1.20e-28 | 122 |
MS.gene98458.t1 | MTR_1g113820 | 26.871 | 521 | 306 | 20 | 127 | 637 | 62 | 517 | 1.63e-28 | 121 |
MS.gene98458.t1 | MTR_5g028920 | 41.935 | 155 | 86 | 2 | 345 | 499 | 77 | 227 | 1.08e-27 | 112 |
MS.gene98458.t1 | MTR_2g438470 | 44.262 | 122 | 67 | 1 | 452 | 573 | 377 | 497 | 3.27e-21 | 98.2 |
MS.gene98458.t1 | MTR_3g055750 | 25.750 | 400 | 229 | 14 | 117 | 497 | 32 | 382 | 5.18e-21 | 96.3 |
MS.gene98458.t1 | MTR_1g113730 | 28.444 | 225 | 151 | 5 | 385 | 606 | 37 | 254 | 2.28e-16 | 81.6 |
MS.gene98458.t1 | MTR_1g113760 | 26.159 | 302 | 205 | 7 | 385 | 679 | 231 | 521 | 2.58e-16 | 83.2 |
MS.gene98458.t1 | MTR_6g016185 | 28.837 | 215 | 129 | 8 | 406 | 619 | 6 | 197 | 4.37e-16 | 77.8 |
MS.gene98458.t1 | MTR_2g438580 | 38.554 | 83 | 50 | 1 | 511 | 593 | 2 | 83 | 7.22e-12 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98458.t1 | AT3G18670 | 34.300 | 621 | 349 | 14 | 105 | 685 | 37 | 638 | 1.66e-112 | 353 |
MS.gene98458.t1 | AT3G18670 | 34.732 | 596 | 325 | 14 | 105 | 685 | 37 | 583 | 3.06e-109 | 343 |
MS.gene98458.t1 | AT5G04700 | 34.244 | 549 | 326 | 11 | 158 | 685 | 121 | 655 | 1.07e-79 | 267 |
MS.gene98458.t1 | AT5G04690 | 32.550 | 596 | 366 | 11 | 109 | 685 | 67 | 645 | 5.35e-79 | 265 |
MS.gene98458.t1 | AT5G04690 | 32.215 | 596 | 354 | 12 | 109 | 685 | 67 | 631 | 6.20e-76 | 256 |
MS.gene98458.t1 | AT5G04690 | 32.014 | 581 | 355 | 10 | 109 | 685 | 67 | 611 | 6.26e-74 | 251 |
MS.gene98458.t1 | AT5G04730 | 33.026 | 542 | 331 | 13 | 165 | 685 | 58 | 588 | 7.64e-73 | 247 |
MS.gene98458.t1 | AT5G04680 | 31.418 | 557 | 339 | 10 | 158 | 685 | 108 | 650 | 2.23e-68 | 236 |
MS.gene98458.t1 | AT5G04680 | 31.402 | 535 | 326 | 9 | 178 | 685 | 7 | 527 | 3.12e-67 | 231 |
MS.gene98458.t1 | AT5G04680 | 31.295 | 556 | 327 | 11 | 158 | 685 | 108 | 636 | 8.87e-66 | 229 |
MS.gene98458.t1 | AT5G04680 | 30.375 | 586 | 336 | 13 | 158 | 685 | 108 | 679 | 2.03e-65 | 229 |
MS.gene98458.t1 | AT5G35810 | 37.349 | 332 | 200 | 4 | 364 | 689 | 6 | 335 | 8.78e-63 | 213 |
MS.gene98458.t1 | AT3G54065 | 46.512 | 172 | 86 | 1 | 483 | 648 | 8 | 179 | 2.42e-45 | 162 |
MS.gene98458.t1 | AT5G04700 | 27.298 | 359 | 228 | 9 | 158 | 497 | 121 | 465 | 9.66e-25 | 108 |
Find 119 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACATCTTGCTGGATATTT+AGG | 0.111175 | 5.4:-18830778 | MS.gene98458:CDS |
TACCAAACACTTTGCTATAT+TGG | 0.169167 | 5.4:+18835973 | None:intergenic |
TTCACTTGCTATGCTCTTAA+AGG | 0.230566 | 5.4:-18828232 | MS.gene98458:CDS |
CATGCGTGCCAATGCAAATA+AGG | 0.231488 | 5.4:+18835565 | None:intergenic |
AACAGGAATTTCACCATTCT+TGG | 0.246309 | 5.4:+18835901 | None:intergenic |
TGTATCAATGCAGAAATATT+TGG | 0.262871 | 5.4:-18835767 | MS.gene98458:intron |
TACATCTTGCTGGATATTTA+GGG | 0.280918 | 5.4:-18830777 | MS.gene98458:CDS |
GTAGCTTCTGTTTCTACAAT+AGG | 0.290851 | 5.4:-18837865 | MS.gene98458:CDS |
TTTCAAAGTGGAAGCAAATA+TGG | 0.297937 | 5.4:-18835533 | MS.gene98458:CDS |
TTATCAGAGCCTGTTATCTA+TGG | 0.300284 | 5.4:-18835927 | MS.gene98458:CDS |
ATAAAATCTCTCTTTGCATT+TGG | 0.303142 | 5.4:+18830716 | None:intergenic |
CTGCTTTCACTAGCTCTTTG+TGG | 0.335333 | 5.4:+18828586 | None:intergenic |
AGGCTAACCCTGACTTGTTA+TGG | 0.342215 | 5.4:-18830945 | MS.gene98458:CDS |
ATCTGATTCAGATTGAGATT+TGG | 0.343325 | 5.4:+18835598 | None:intergenic |
CAAGAGACAACTACGATAAC+TGG | 0.344006 | 5.4:-18837936 | MS.gene98458:CDS |
ACTTCAGTCCTGCTCTTCAT+TGG | 0.349241 | 5.4:-18828372 | MS.gene98458:CDS |
TGTGTTGTCATGTAAGAATA+GGG | 0.353990 | 5.4:+18828443 | None:intergenic |
TCGTAGTTGTCTCTTGTTAG+TGG | 0.354498 | 5.4:+18837943 | None:intergenic |
ACTAATCATTAAGTTTCATT+TGG | 0.358347 | 5.4:+18828098 | None:intergenic |
GCTGCAGCTTTCACTGTGCC+TGG | 0.360785 | 5.4:-18828492 | MS.gene98458:CDS |
AATACCTTCTTACATCTTGC+TGG | 0.361216 | 5.4:-18830787 | MS.gene98458:CDS |
GGCTAACCCTGACTTGTTAT+GGG | 0.366915 | 5.4:-18830944 | MS.gene98458:CDS |
TCACTTGCTATGCTCTTAAA+GGG | 0.367624 | 5.4:-18828231 | MS.gene98458:CDS |
AAGAAGTTAAAGCATGGAAC+AGG | 0.374228 | 5.4:-18837828 | MS.gene98458:CDS |
TATGTCATTTGCAAGTATTC+CGG | 0.374494 | 5.4:-18828184 | MS.gene98458:CDS |
CTGGTTAGAAACTATCTTGC+GGG | 0.375400 | 5.4:-18837907 | MS.gene98458:CDS |
CTTCATGTTGCAGCGATTGC+TGG | 0.380658 | 5.4:-18836109 | MS.gene98458:CDS |
TTTCTCTGTGGTGTCTATGA+TGG | 0.383413 | 5.4:-18828268 | MS.gene98458:CDS |
TCAAAAGCCCATAACAAGTC+AGG | 0.387367 | 5.4:+18830937 | None:intergenic |
TCAATATTTCAAGCACTAGA+TGG | 0.391376 | 5.4:+18831088 | None:intergenic |
ATGCAAAATTATTCATGAAA+AGG | 0.393604 | 5.4:-18836177 | MS.gene98458:CDS |
ATGTGTTGTCATGTAAGAAT+AGG | 0.396480 | 5.4:+18828442 | None:intergenic |
TGTTCTTCTTGCTGCAGCTA+AGG | 0.399795 | 5.4:-18835882 | MS.gene98458:CDS |
TCTTGGTCTCCATAGATAAC+AGG | 0.406319 | 5.4:+18835918 | None:intergenic |
GGTTTATTGAGAGAGGTAAC+TGG | 0.408072 | 5.4:-18836204 | MS.gene98458:CDS |
GATATTACGAAATCTTGAAA+TGG | 0.428084 | 5.4:+18833188 | None:intergenic |
CAGATTGAGATTTGGATTTG+TGG | 0.429807 | 5.4:+18835606 | None:intergenic |
TTCATACTGCTAAAGATGCT+TGG | 0.430531 | 5.4:-18837735 | MS.gene98458:CDS |
TGCAAAATTATTCATGAAAA+GGG | 0.432987 | 5.4:-18836176 | MS.gene98458:CDS |
AAAGTGTTTGGTAAAGAAGA+AGG | 0.434242 | 5.4:-18835963 | MS.gene98458:CDS |
TACCAATATAGCAAAGTGTT+TGG | 0.435024 | 5.4:-18835975 | MS.gene98458:CDS |
AGATTGAGATTTGGATTTGT+GGG | 0.438980 | 5.4:+18835607 | None:intergenic |
CACGTCACGTTATGCAGAAA+AGG | 0.440187 | 5.4:-18828343 | MS.gene98458:CDS |
CGTGCAACCCTTATTTGCAT+TGG | 0.442341 | 5.4:-18835573 | MS.gene98458:CDS |
TCTCTTTGCATTTGGAGAGC+AGG | 0.442521 | 5.4:+18830724 | None:intergenic |
TCTGATCTTCACCGTAGATC+TGG | 0.458865 | 5.4:-18830748 | MS.gene98458:CDS |
TTCGTAATATCAAAGTTGTC+TGG | 0.460344 | 5.4:-18833176 | MS.gene98458:intron |
GTTCTTCTTGCTGCAGCTAA+GGG | 0.462009 | 5.4:-18835881 | MS.gene98458:CDS |
GCTCGTGTTGCTGAGTTGAC+TGG | 0.464647 | 5.4:-18836001 | MS.gene98458:CDS |
TTAGCTGCAGCAAGAAGAAC+AGG | 0.465319 | 5.4:+18835884 | None:intergenic |
GTGAAGAAATTAGTGAAGGA+AGG | 0.471677 | 5.4:-18836073 | MS.gene98458:CDS |
ATACATGATGCAAGTGCAAA+TGG | 0.476155 | 5.4:-18830850 | MS.gene98458:CDS |
CTTATTTGCATTGGCACGCA+TGG | 0.476694 | 5.4:-18835564 | MS.gene98458:CDS |
TCAACTCAGCAACACGAGCT+AGG | 0.482311 | 5.4:+18836005 | None:intergenic |
GGAAGGGAAAGGTAAGTTAG+TGG | 0.485999 | 5.4:-18836056 | MS.gene98458:CDS |
AATCGTGCACCCCAAGTGTA+AGG | 0.493640 | 5.4:-18828658 | MS.gene98458:CDS |
TCAATTATACGGCTCAGAAT+CGG | 0.496291 | 5.4:-18837701 | MS.gene98458:CDS |
TCTTGCGGGGCATGATGTGT+GGG | 0.499106 | 5.4:-18837893 | MS.gene98458:CDS |
TTGTCTTGATTGTTTCCGCC+AGG | 0.500878 | 5.4:+18828474 | None:intergenic |
TTCTGTTTCTACAATAGGTG+TGG | 0.501630 | 5.4:-18837860 | MS.gene98458:CDS |
GCTTGAAATATTGAATTGCT+TGG | 0.504787 | 5.4:-18831079 | MS.gene98458:CDS |
CTACGATAACTGGAGCTGTC+TGG | 0.507082 | 5.4:-18837926 | MS.gene98458:CDS |
CTCAGAATCGGAAGCCGAGT+TGG | 0.508699 | 5.4:-18837689 | MS.gene98458:CDS |
TACCTCTCTCAATAAACCTA+TGG | 0.508908 | 5.4:+18836209 | None:intergenic |
TAGCTGCTTTCAACGTTGCA+CGG | 0.515660 | 5.4:+18831004 | None:intergenic |
ATGCGTGCCAATGCAAATAA+GGG | 0.517366 | 5.4:+18835566 | None:intergenic |
ATCTTGCGGGGCATGATGTG+TGG | 0.527818 | 5.4:-18837894 | MS.gene98458:CDS |
CACAAAGAGCTAGTGAAAGC+AGG | 0.533738 | 5.4:-18828585 | MS.gene98458:CDS |
AGACCGAAAAGTAACTTAAG+TGG | 0.534759 | 5.4:+18828303 | None:intergenic |
AAGTGTTTGGTAAAGAAGAA+GGG | 0.536459 | 5.4:-18835962 | MS.gene98458:CDS |
TGAGAATTCCAATGAAGAGC+AGG | 0.540919 | 5.4:+18828364 | None:intergenic |
CAACTCAGCAACACGAGCTA+GGG | 0.549780 | 5.4:+18836006 | None:intergenic |
GAAGAGCAGGACTGAAGTTG+AGG | 0.550261 | 5.4:+18828377 | None:intergenic |
ATGCTCTTAAAGGGACATCA+AGG | 0.552072 | 5.4:-18828222 | MS.gene98458:CDS |
CATATTATTCAACTAGCATG+TGG | 0.553341 | 5.4:-18837787 | MS.gene98458:CDS |
ATATCCAGCAAGATGTAAGA+AGG | 0.555781 | 5.4:+18830783 | None:intergenic |
TTGTGGGCAAGTGGCAATCG+TGG | 0.555916 | 5.4:+18835623 | None:intergenic |
CTCCATAGGTTTATTGAGAG+AGG | 0.559925 | 5.4:-18836211 | MS.gene98458:CDS |
TGAAGAAATTAGTGAAGGAA+GGG | 0.560034 | 5.4:-18836072 | MS.gene98458:CDS |
AAATGGGCAAAAGATACAGC+TGG | 0.563052 | 5.4:-18828558 | MS.gene98458:CDS |
TTATCTATGGAGACCAAGAA+TGG | 0.563666 | 5.4:-18835914 | MS.gene98458:CDS |
TCTGTTTCTACAATAGGTGT+GGG | 0.565916 | 5.4:-18837859 | MS.gene98458:CDS |
TAAGGAATCTGAACTGAGAG+AGG | 0.568722 | 5.4:-18831037 | MS.gene98458:CDS |
TGATATAATGCATAAAGACA+TGG | 0.568825 | 5.4:-18835831 | MS.gene98458:CDS |
TGTTTGGTAAAGAAGAAGGG+AGG | 0.583192 | 5.4:-18835959 | MS.gene98458:CDS |
GGAGAGCAGGACCAGATCTA+CGG | 0.583724 | 5.4:+18830737 | None:intergenic |
CAAAAGCCCATAACAAGTCA+GGG | 0.584135 | 5.4:+18830938 | None:intergenic |
ATGGCAAGCATTGCAGCAAG+TGG | 0.585270 | 5.4:-18837979 | MS.gene98458:CDS |
TCTGGTTAGAAACTATCTTG+CGG | 0.586107 | 5.4:-18837908 | MS.gene98458:CDS |
GTTTGGTAAAGAAGAAGGGA+GGG | 0.588275 | 5.4:-18835958 | MS.gene98458:CDS |
CTAAAGAAGAAGTTAAAGCA+TGG | 0.590593 | 5.4:-18837834 | MS.gene98458:CDS |
AAATCTCAATCTGAATCAGA+TGG | 0.593156 | 5.4:-18835596 | MS.gene98458:CDS |
AATTGTGAAGAAATTAGTGA+AGG | 0.596793 | 5.4:-18836077 | MS.gene98458:CDS |
TATGGAGTGGTCTATAGTGA+AGG | 0.597660 | 5.4:+18836227 | None:intergenic |
ATGGAACAGGGATAATGCTA+AGG | 0.598375 | 5.4:-18837815 | MS.gene98458:CDS |
TGCAAGTGCAAATGGACGAA+AGG | 0.599737 | 5.4:-18830842 | MS.gene98458:CDS |
GTTCATAGATGCAATGAGGA+AGG | 0.603974 | 5.4:-18830965 | MS.gene98458:CDS |
ACGTTGAAAGCAGCTAAGCA+TGG | 0.604300 | 5.4:-18830997 | MS.gene98458:CDS |
GTGTTGTCATGTAAGAATAG+GGG | 0.605196 | 5.4:+18828444 | None:intergenic |
ACCTTGCTCAATGTCCAACT+CGG | 0.610226 | 5.4:+18837675 | None:intergenic |
TGTGGGCAAGTGGCAATCGT+GGG | 0.610872 | 5.4:+18835624 | None:intergenic |
ATGAAGAGTCGCAACTGTGA+AGG | 0.615755 | 5.4:+18828147 | None:intergenic |
GGCGGAAACAATCAAGACAA+TGG | 0.616390 | 5.4:-18828471 | MS.gene98458:CDS |
TTCACTATAGACCACTCCAT+AGG | 0.616473 | 5.4:-18836225 | MS.gene98458:CDS |
CTACGGTGAAGATCAGATGA+AGG | 0.617676 | 5.4:+18830754 | None:intergenic |
AAATTAGTGAAGGAAGGGAA+AGG | 0.621160 | 5.4:-18836067 | MS.gene98458:CDS |
CTTGCGGGGCATGATGTGTG+GGG | 0.629225 | 5.4:-18837892 | MS.gene98458:CDS |
GCAGCTTTCACTGTGCCTGG+CGG | 0.630442 | 5.4:-18828489 | MS.gene98458:CDS |
GCCGAGTTGGACATTGAGCA+AGG | 0.637988 | 5.4:-18837676 | MS.gene98458:intron |
ATGGCTTCTGTGTTTCAAAG+TGG | 0.641468 | 5.4:-18835545 | MS.gene98458:CDS |
ACTCATTCCCGATGAAGACG+TGG | 0.645991 | 5.4:+18836135 | None:intergenic |
GATTTGGATTTGTGGGCAAG+TGG | 0.650465 | 5.4:+18835614 | None:intergenic |
CTCTCAATAAACCTATGGAG+TGG | 0.651763 | 5.4:+18836214 | None:intergenic |
GAAAGCTGCAGCAAACATGA+TGG | 0.654889 | 5.4:+18828503 | None:intergenic |
AGAAGTTAAAGCATGGAACA+GGG | 0.655186 | 5.4:-18837827 | MS.gene98458:CDS |
TGGTTAGAAACTATCTTGCG+GGG | 0.659418 | 5.4:-18837906 | MS.gene98458:CDS |
GAAGGTACAAGAGCAATCAC+CGG | 0.664403 | 5.4:+18828165 | None:intergenic |
TAGAGTTCATAGATGCAATG+AGG | 0.684116 | 5.4:-18830969 | MS.gene98458:CDS |
GTGGAAATGAAAGACAATCG+TGG | 0.708151 | 5.4:-18836037 | MS.gene98458:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 18828113 | 18838001 | 18828113 | ID=MS.gene98458 |
chr5.4 | mRNA | 18828113 | 18838001 | 18828113 | ID=MS.gene98458.t1;Parent=MS.gene98458 |
chr5.4 | exon | 18837677 | 18838001 | 18837677 | ID=MS.gene98458.t1.exon1;Parent=MS.gene98458.t1 |
chr5.4 | CDS | 18837677 | 18838001 | 18837677 | ID=cds.MS.gene98458.t1;Parent=MS.gene98458.t1 |
chr5.4 | exon | 18835768 | 18836268 | 18835768 | ID=MS.gene98458.t1.exon2;Parent=MS.gene98458.t1 |
chr5.4 | CDS | 18835768 | 18836268 | 18835768 | ID=cds.MS.gene98458.t1;Parent=MS.gene98458.t1 |
chr5.4 | exon | 18835507 | 18835674 | 18835507 | ID=MS.gene98458.t1.exon3;Parent=MS.gene98458.t1 |
chr5.4 | CDS | 18835507 | 18835674 | 18835507 | ID=cds.MS.gene98458.t1;Parent=MS.gene98458.t1 |
chr5.4 | exon | 18833177 | 18833236 | 18833177 | ID=MS.gene98458.t1.exon4;Parent=MS.gene98458.t1 |
chr5.4 | CDS | 18833177 | 18833236 | 18833177 | ID=cds.MS.gene98458.t1;Parent=MS.gene98458.t1 |
chr5.4 | exon | 18830708 | 18831144 | 18830708 | ID=MS.gene98458.t1.exon5;Parent=MS.gene98458.t1 |
chr5.4 | CDS | 18830708 | 18831144 | 18830708 | ID=cds.MS.gene98458.t1;Parent=MS.gene98458.t1 |
chr5.4 | exon | 18828113 | 18828691 | 18828113 | ID=MS.gene98458.t1.exon6;Parent=MS.gene98458.t1 |
chr5.4 | CDS | 18828113 | 18828691 | 18828113 | ID=cds.MS.gene98458.t1;Parent=MS.gene98458.t1 |
Gene Sequence |
Protein sequence |