AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98513

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98513.t1 MTR_2g046710 99.495 396 2 0 1 396 1 396 0.0 816
MS.gene98513.t1 MTR_4g123810 93.878 392 24 0 1 392 1 392 0.0 743
MS.gene98513.t1 MTR_7g110310 93.573 389 25 0 4 392 3 391 0.0 740
MS.gene98513.t1 MTR_7g102120 90.674 386 36 0 4 389 2 387 0.0 706
MS.gene98513.t1 MTR_1g063060 88.083 386 46 0 4 389 2 387 0.0 695
MS.gene98513.t1 MTR_1g063060 88.083 386 46 0 4 389 20 405 0.0 695
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98513.t1 AT3G17390 94.615 390 21 0 4 393 2 391 0.0 746
MS.gene98513.t1 AT1G02500 93.059 389 27 0 4 392 2 390 0.0 727
MS.gene98513.t1 AT1G02500 93.059 389 27 0 4 392 2 390 0.0 727
MS.gene98513.t1 AT4G01850 91.003 389 35 0 4 392 2 390 0.0 722
MS.gene98513.t1 AT4G01850 91.003 389 35 0 4 392 2 390 0.0 722
MS.gene98513.t1 AT2G36880 90.674 386 36 0 4 389 2 387 0.0 709
MS.gene98513.t1 AT2G36880 90.674 386 36 0 4 389 2 387 0.0 709

Find 114 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTGCTTATGGTCATTT+TGG 0.234247 2.1:+44823176 MS.gene98513:CDS
ATGTTAAGGATTTCCTTATC+AGG 0.261463 2.1:-44823068 None:intergenic
TTCCTTATCAGGGATCTTTC+CGG 0.289318 2.1:-44823057 None:intergenic
GTTGCAAGAACATGGGTTAA+AGG 0.294303 2.1:-44822498 None:intergenic
CATGTTCTTGCAACCAAGTT+AGG 0.294943 2.1:+44822507 MS.gene98513:CDS
ACCAACATGGTTATGGTCTT+TGG 0.296902 2.1:+44822225 MS.gene98513:CDS
TTCTCATCAAGGTACTTCTC+TGG 0.310083 2.1:-44822741 None:intergenic
TGAAAGAATCCTTTGACTTC+AGG 0.314473 2.1:+44823093 MS.gene98513:CDS
CATCGATACCTACGGTGGTT+GGG 0.340499 2.1:+44822848 MS.gene98513:CDS
ATCTGGTCGCAAAGCTTGTC+GGG 0.354536 2.1:-44822129 None:intergenic
CTATTAACCTTGATCTTAAG+AGG 0.359987 2.1:+44823129 MS.gene98513:CDS
TTAAGAGGGGTGGAAATAAC+AGG 0.368924 2.1:+44823144 MS.gene98513:CDS
AGGATTCTTTCACAATGTTA+AGG 0.378326 2.1:-44823082 None:intergenic
TCACATGCAACTTTGCTGTC+TGG 0.378990 2.1:-44822189 None:intergenic
GTGATCAAGGTCACATGTTC+GGG 0.391846 2.1:+44822445 MS.gene98513:CDS
GATATTGCTCAAGGTGTTCA+TGG 0.399050 2.1:+44822387 MS.gene98513:CDS
GGTGATCAAGGTCACATGTT+CGG 0.414273 2.1:+44822444 MS.gene98513:CDS
AGGTTAATAGAGATCATTCC+TGG 0.417762 2.1:-44823116 None:intergenic
CACAAAGACCAACATGGTTA+TGG 0.418184 2.1:+44822218 MS.gene98513:CDS
TTCCACCCCTCTTAAGATCA+AGG 0.432234 2.1:-44823136 None:intergenic
TCTCATCAAGGTACTTCTCT+GGG 0.433415 2.1:-44822740 None:intergenic
ATCTTCCACTTGAACCCTTC+AGG 0.443169 2.1:+44822768 MS.gene98513:CDS
TGAACACCTTGAGCAATATC+AGG 0.445358 2.1:-44822384 None:intergenic
TCACAGATTCAGATGTGTAT+AGG 0.445528 2.1:-44822095 None:intergenic
GGTTGGGGTGCACACGGTGG+TGG 0.446281 2.1:+44822864 MS.gene98513:CDS
CATGGTGACGCTGGTCTAAC+CGG 0.447546 2.1:+44822813 MS.gene98513:CDS
CACGGTGGTGGTGCTTTCTC+CGG 0.452162 2.1:+44822876 MS.gene98513:CDS
GCAAAGAGTATTGTTGCTAA+TGG 0.456252 2.1:+44822951 MS.gene98513:CDS
CTAACTTGGTTGCAAGAACA+TGG 0.459951 2.1:-44822506 None:intergenic
CGTCGTGCTGTGTTGAGATA+AGG 0.460565 2.1:-44822656 None:intergenic
GAATCCTTTGACTTCAGGCC+AGG 0.462379 2.1:+44823098 MS.gene98513:CDS
CAAGAACGGCATCAGAGATC+TGG 0.466047 2.1:-44822146 None:intergenic
GTGACTTGGGTCTTTCCATC+AGG 0.467493 2.1:-44822579 None:intergenic
CCTTCAGGCCGTTTCGTCAT+CGG 0.467571 2.1:+44822783 MS.gene98513:CDS
TTGCTAATGGACTTGCTAGA+AGG 0.469452 2.1:+44822964 MS.gene98513:CDS
CTATGTTCCTGCATGTGTTA+CGG 0.472577 2.1:-44822290 None:intergenic
ATCGATACCTACGGTGGTTG+GGG 0.475144 2.1:+44822849 MS.gene98513:CDS
TTTGTTGATTCTTACGGTAC+CGG 0.476307 2.1:+44823038 MS.gene98513:CDS
ACAAACACAGACAATGGCTC+TGG 0.491840 2.1:-44823020 None:intergenic
GTTCAAGTTTCCTATGCTAT+CGG 0.494037 2.1:+44822993 MS.gene98513:CDS
ATCAGCTGCAATTTCATCGT+TGG 0.496338 2.1:-44822688 None:intergenic
TGAAGGGTTCAAGTGGAAGA+TGG 0.500503 2.1:-44822766 None:intergenic
TTCGTCATCGGTGGTCCTCA+TGG 0.503356 2.1:+44822795 MS.gene98513:CDS
GATCTGGTCGCAAAGCTTGT+CGG 0.504899 2.1:-44822130 None:intergenic
AGTGAGCTTAGCTCCTAACT+TGG 0.505858 2.1:-44822520 None:intergenic
GAAATTGGTGCTGGTGATCA+AGG 0.514486 2.1:+44822432 MS.gene98513:CDS
TGTTAAGGATTTCCTTATCA+GGG 0.514572 2.1:-44823067 None:intergenic
AAGGTACTTCTCTGGGATCA+CGG 0.517512 2.1:-44822733 None:intergenic
TACGGTGGTTGGGGTGCACA+CGG 0.522520 2.1:+44822858 MS.gene98513:CDS
TGCTGTCTGGATCTTGCTCA+AGG 0.528629 2.1:-44822176 None:intergenic
GCAAGAACGGAACATGCCCT+TGG 0.529608 2.1:+44822550 MS.gene98513:CDS
TACCGGAAAGATCCCTGATA+AGG 0.532446 2.1:+44823055 MS.gene98513:CDS
CGTAACACATGCAGGAACAT+AGG 0.532819 2.1:+44822291 MS.gene98513:CDS
GCTAACTTTCCACCCTTGAG+TGG 0.533954 2.1:-44823236 None:intergenic
TCATCGATACCTACGGTGGT+TGG 0.534200 2.1:+44822847 MS.gene98513:CDS
AGGTACTTCTCTGGGATCAC+GGG 0.534979 2.1:-44822732 None:intergenic
TCACCAGCACCAATTTCCTC+AGG 0.537693 2.1:-44822426 None:intergenic
AACCTTGATCTTAAGAGGGG+TGG 0.538816 2.1:+44823134 MS.gene98513:CDS
GGTGGTCCTCATGGTGACGC+TGG 0.540442 2.1:+44822804 MS.gene98513:CDS
CTCACTGAAGTTCGCAAGAA+CGG 0.541655 2.1:+44822537 MS.gene98513:CDS
CGATGACGAAACGGCCTGAA+GGG 0.544735 2.1:-44822782 None:intergenic
TATTAACCTTGATCTTAAGA+GGG 0.546800 2.1:+44823130 MS.gene98513:CDS
GAAATACTCAATAGTGACTT+GGG 0.547189 2.1:-44822592 None:intergenic
CATAAGCTCAGGTGTTTCAT+CGG 0.547507 2.1:-44822475 None:intergenic
TCTGTGTTTGTTGATTCTTA+CGG 0.549967 2.1:+44823032 MS.gene98513:CDS
GAGGACCACCGATGACGAAA+CGG 0.552401 2.1:-44822791 None:intergenic
TGAAATACTCAATAGTGACT+TGG 0.552787 2.1:-44822593 None:intergenic
TGCCCTTGGTTGAGACCTGA+TGG 0.559477 2.1:+44822564 MS.gene98513:CDS
CATTCCTGGCCTGAAGTCAA+AGG 0.564202 2.1:-44823102 None:intergenic
TGGGTTAAAGGCATAAGCTC+AGG 0.565243 2.1:-44822486 None:intergenic
AGATTGTCCGTAACACATGC+AGG 0.567401 2.1:+44822283 MS.gene98513:CDS
CACATCTGAATCTGTGAACG+AGG 0.567405 2.1:+44822101 MS.gene98513:CDS
GGAGGTTGTGAAGCCACTCA+AGG 0.570115 2.1:+44823223 MS.gene98513:CDS
CCGATGACGAAACGGCCTGA+AGG 0.572989 2.1:-44822783 None:intergenic
TTCCATCAGGTCTCAACCAA+GGG 0.579295 2.1:-44822566 None:intergenic
ATCGATGATGATCTTGCGGC+CGG 0.584426 2.1:-44822832 None:intergenic
GTGTTGAGATAAGGACGGTA+TGG 0.586897 2.1:-44822647 None:intergenic
AAGATCCAACAAAAGTCGAT+AGG 0.589834 2.1:+44822901 MS.gene98513:CDS
CCATCACTTCACTTAGGCAG+TGG 0.590313 2.1:-44823258 None:intergenic
AGACCTGAGGAAATTGGTGC+TGG 0.593942 2.1:+44822423 MS.gene98513:CDS
TATTGAGTATTTCAATGACA+AGG 0.595054 2.1:+44822602 MS.gene98513:CDS
TTTCAATGACAAGGGCGCCA+TGG 0.602020 2.1:+44822611 MS.gene98513:CDS
CAAACACAGACAATGGCTCT+GGG 0.603316 2.1:-44823019 None:intergenic
TCAGGCCGTTTCGTCATCGG+TGG 0.606053 2.1:+44822786 MS.gene98513:CDS
AACGGCCTGAAGGGTTCAAG+TGG 0.607726 2.1:-44822773 None:intergenic
CAGAGTCCTGATATTGCTCA+AGG 0.609518 2.1:+44822378 MS.gene98513:CDS
GAGATGATGCTGATTTCACA+TGG 0.613131 2.1:+44823201 MS.gene98513:CDS
CTCAAGGCAAGCATCAAGAA+CGG 0.613435 2.1:-44822160 None:intergenic
ACCAAAGACCATAACCATGT+TGG 0.617396 2.1:-44822226 None:intergenic
GAATCAACAAACACAGACAA+TGG 0.619495 2.1:-44823026 None:intergenic
CTCTGGGACACCGATAGCAT+AGG 0.620591 2.1:-44823003 None:intergenic
AGGACGGTATGGACACGGAT+CGG 0.620832 2.1:-44822636 None:intergenic
AGATAAGGACGGTATGGACA+CGG 0.625832 2.1:-44822641 None:intergenic
ATTGAGTATTTCAATGACAA+GGG 0.626222 2.1:+44822603 MS.gene98513:CDS
TTTCCATCAGGTCTCAACCA+AGG 0.628406 2.1:-44822567 None:intergenic
GAGGTTGTGAAGCCACTCAA+GGG 0.631025 2.1:+44823224 MS.gene98513:CDS
AAGATCATCATCGATACCTA+CGG 0.632923 2.1:+44822840 MS.gene98513:CDS
TCTGTTGTTCAATGTTGACA+AGG 0.633149 2.1:-44822359 None:intergenic
ATGGACACGGATCGGAACCA+TGG 0.634239 2.1:-44822628 None:intergenic
TAACTTGGTTGCAAGAACAT+GGG 0.635065 2.1:-44822505 None:intergenic
ATTAACCTTGATCTTAAGAG+GGG 0.646766 2.1:+44823131 MS.gene98513:CDS
GTTGTGAAGCCACTCAAGGG+TGG 0.650129 2.1:+44823227 MS.gene98513:CDS
CCAACAAAAGTCGATAGGAG+TGG 0.651342 2.1:+44822906 MS.gene98513:CDS
AGGTATCGATGATGATCTTG+CGG 0.652737 2.1:-44822836 None:intergenic
GTGTGCACCCCAACCACCGT+AGG 0.659434 2.1:-44822856 None:intergenic
GGTGGTTGGGGTGCACACGG+TGG 0.663588 2.1:+44822861 MS.gene98513:CDS
TCTGGTCGCAAAGCTTGTCG+GGG 0.671297 2.1:-44822128 None:intergenic
GTTAGACCAGCGTCACCATG+AGG 0.685537 2.1:-44822810 None:intergenic
ACATCTGAATCTGTGAACGA+GGG 0.708400 2.1:+44822102 MS.gene98513:CDS
TGATGCTGATTTCACATGGG+AGG 0.722876 2.1:+44823205 MS.gene98513:CDS
AGATGATGCTGATTTCACAT+GGG 0.723185 2.1:+44823202 MS.gene98513:CDS
ATCATCATCGATACCTACGG+TGG 0.735632 2.1:+44822843 MS.gene98513:CDS
GTGCTGTGTTGAGATAAGGA+CGG 0.743744 2.1:-44822652 None:intergenic
AACTTGCACAAAGACCAACA+TGG 0.753910 2.1:+44822212 MS.gene98513:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTGAGTATTTCAATGACAA+GGG + chr2.1:44822603-44822622 MS.gene98513:CDS 25.0%
! TATTAACCTTGATCTTAAGA+GGG + chr2.1:44823130-44823149 MS.gene98513:CDS 25.0%
! TATTGAGTATTTCAATGACA+AGG + chr2.1:44822602-44822621 MS.gene98513:CDS 25.0%
AGGATTCTTTCACAATGTTA+AGG - chr2.1:44823085-44823104 None:intergenic 30.0%
ATGTTAAGGATTTCCTTATC+AGG - chr2.1:44823071-44823090 None:intergenic 30.0%
ATTAACCTTGATCTTAAGAG+GGG + chr2.1:44823131-44823150 MS.gene98513:CDS 30.0%
CTATTAACCTTGATCTTAAG+AGG + chr2.1:44823129-44823148 MS.gene98513:CDS 30.0%
GAAATACTCAATAGTGACTT+GGG - chr2.1:44822595-44822614 None:intergenic 30.0%
TGAAATACTCAATAGTGACT+TGG - chr2.1:44822596-44822615 None:intergenic 30.0%
TGTTAAGGATTTCCTTATCA+GGG - chr2.1:44823070-44823089 None:intergenic 30.0%
!! TCTGTGTTTGTTGATTCTTA+CGG + chr2.1:44823032-44823051 MS.gene98513:CDS 30.0%
AAGATCATCATCGATACCTA+CGG + chr2.1:44822840-44822859 MS.gene98513:CDS 35.0%
AAGATCCAACAAAAGTCGAT+AGG + chr2.1:44822901-44822920 MS.gene98513:CDS 35.0%
ACAAAAAGACCTGAGGAAAT+TGG + chr2.1:44822417-44822436 MS.gene98513:CDS 35.0%
AGGTTAATAGAGATCATTCC+TGG - chr2.1:44823119-44823138 None:intergenic 35.0%
GAATCAACAAACACAGACAA+TGG - chr2.1:44823029-44823048 None:intergenic 35.0%
TAACTTGGTTGCAAGAACAT+GGG - chr2.1:44822508-44822527 None:intergenic 35.0%
TCACAGATTCAGATGTGTAT+AGG - chr2.1:44822098-44822117 None:intergenic 35.0%
TCTGTTGTTCAATGTTGACA+AGG - chr2.1:44822362-44822381 None:intergenic 35.0%
! GACTTTTGTTGGATCTTTAC+CGG - chr2.1:44822898-44822917 None:intergenic 35.0%
! GTTCAAGTTTCCTATGCTAT+CGG + chr2.1:44822993-44823012 MS.gene98513:CDS 35.0%
! TGAAAGAATCCTTTGACTTC+AGG + chr2.1:44823093-44823112 MS.gene98513:CDS 35.0%
!! AGATGATGCTGATTTCACAT+GGG + chr2.1:44823202-44823221 MS.gene98513:CDS 35.0%
!! GCAAAGAGTATTGTTGCTAA+TGG + chr2.1:44822951-44822970 MS.gene98513:CDS 35.0%
!! TTTGTTGATTCTTACGGTAC+CGG + chr2.1:44823038-44823057 MS.gene98513:CDS 35.0%
!! TTTTTGAAGACTGCTGCTTA+TGG + chr2.1:44823167-44823186 MS.gene98513:CDS 35.0%
AACTTGCACAAAGACCAACA+TGG + chr2.1:44822212-44822231 MS.gene98513:CDS 40.0%
ACATCTGAATCTGTGAACGA+GGG + chr2.1:44822102-44822121 MS.gene98513:CDS 40.0%
ACCAAAGACCATAACCATGT+TGG - chr2.1:44822229-44822248 None:intergenic 40.0%
ACCAACATGGTTATGGTCTT+TGG + chr2.1:44822225-44822244 MS.gene98513:CDS 40.0%
ATCAGCTGCAATTTCATCGT+TGG - chr2.1:44822691-44822710 None:intergenic 40.0%
CACAAAGACCAACATGGTTA+TGG + chr2.1:44822218-44822237 MS.gene98513:CDS 40.0%
CATAAGCTCAGGTGTTTCAT+CGG - chr2.1:44822478-44822497 None:intergenic 40.0%
CATGTTCTTGCAACCAAGTT+AGG + chr2.1:44822507-44822526 MS.gene98513:CDS 40.0%
CCATCTTACAAAAAGACCTG+AGG + chr2.1:44822410-44822429 MS.gene98513:CDS 40.0%
CTAACTTGGTTGCAAGAACA+TGG - chr2.1:44822509-44822528 None:intergenic 40.0%
CTATGTTCCTGCATGTGTTA+CGG - chr2.1:44822293-44822312 None:intergenic 40.0%
TGAACACCTTGAGCAATATC+AGG - chr2.1:44822387-44822406 None:intergenic 40.0%
TTAAGAGGGGTGGAAATAAC+AGG + chr2.1:44823144-44823163 MS.gene98513:CDS 40.0%
TTCCTTATCAGGGATCTTTC+CGG - chr2.1:44823060-44823079 None:intergenic 40.0%
! CCTCAGGTCTTTTTGTAAGA+TGG - chr2.1:44822413-44822432 None:intergenic 40.0%
! GATATTGCTCAAGGTGTTCA+TGG + chr2.1:44822387-44822406 MS.gene98513:CDS 40.0%
! GGAAGATGGTTTTCTCATCA+AGG - chr2.1:44822755-44822774 None:intergenic 40.0%
! GTTGCAAGAACATGGGTTAA+AGG - chr2.1:44822501-44822520 None:intergenic 40.0%
! TCTCATCAAGGTACTTCTCT+GGG - chr2.1:44822743-44822762 None:intergenic 40.0%
! TTCTCATCAAGGTACTTCTC+TGG - chr2.1:44822744-44822763 None:intergenic 40.0%
!! ACTGCTGCTTATGGTCATTT+TGG + chr2.1:44823176-44823195 MS.gene98513:CDS 40.0%
!! AGGTATCGATGATGATCTTG+CGG - chr2.1:44822839-44822858 None:intergenic 40.0%
!! GAGATGATGCTGATTTCACA+TGG + chr2.1:44823201-44823220 MS.gene98513:CDS 40.0%
!! TTGCTAATGGACTTGCTAGA+AGG + chr2.1:44822964-44822983 MS.gene98513:CDS 40.0%
!!! GGTTTTGTTTCAGACGATGT+TGG + chr2.1:44822312-44822331 MS.gene98513:CDS 40.0%
AACCTTGATCTTAAGAGGGG+TGG + chr2.1:44823134-44823153 MS.gene98513:CDS 45.0%
ACAAACACAGACAATGGCTC+TGG - chr2.1:44823023-44823042 None:intergenic 45.0%
AGATAAGGACGGTATGGACA+CGG - chr2.1:44822644-44822663 None:intergenic 45.0%
AGATTGTCCGTAACACATGC+AGG + chr2.1:44822283-44822302 MS.gene98513:CDS 45.0%
AGTGAGCTTAGCTCCTAACT+TGG - chr2.1:44822523-44822542 None:intergenic 45.0%
ATCATCATCGATACCTACGG+TGG + chr2.1:44822843-44822862 MS.gene98513:CDS 45.0%
ATCTTCCACTTGAACCCTTC+AGG + chr2.1:44822768-44822787 MS.gene98513:CDS 45.0%
CAAACACAGACAATGGCTCT+GGG - chr2.1:44823022-44823041 None:intergenic 45.0%
CACATCTGAATCTGTGAACG+AGG + chr2.1:44822101-44822120 MS.gene98513:CDS 45.0%
CAGAGTCCTGATATTGCTCA+AGG + chr2.1:44822378-44822397 MS.gene98513:CDS 45.0%
CCAACAAAAGTCGATAGGAG+TGG + chr2.1:44822906-44822925 MS.gene98513:CDS 45.0%
CGTAACACATGCAGGAACAT+AGG + chr2.1:44822291-44822310 MS.gene98513:CDS 45.0%
CTCAAGGCAAGCATCAAGAA+CGG - chr2.1:44822163-44822182 None:intergenic 45.0%
CTCACTGAAGTTCGCAAGAA+CGG + chr2.1:44822537-44822556 MS.gene98513:CDS 45.0%
GGTGATCAAGGTCACATGTT+CGG + chr2.1:44822444-44822463 MS.gene98513:CDS 45.0%
GTGATCAAGGTCACATGTTC+GGG + chr2.1:44822445-44822464 MS.gene98513:CDS 45.0%
GTGCTGTGTTGAGATAAGGA+CGG - chr2.1:44822655-44822674 None:intergenic 45.0%
GTGTTGAGATAAGGACGGTA+TGG - chr2.1:44822650-44822669 None:intergenic 45.0%
TACCGGAAAGATCCCTGATA+AGG + chr2.1:44823055-44823074 MS.gene98513:CDS 45.0%
TGAAGGGTTCAAGTGGAAGA+TGG - chr2.1:44822769-44822788 None:intergenic 45.0%
TTCCACCCCTCTTAAGATCA+AGG - chr2.1:44823139-44823158 None:intergenic 45.0%
TTCCATCAGGTCTCAACCAA+GGG - chr2.1:44822569-44822588 None:intergenic 45.0%
TTTCCATCAGGTCTCAACCA+AGG - chr2.1:44822570-44822589 None:intergenic 45.0%
! TCACATGCAACTTTGCTGTC+TGG - chr2.1:44822192-44822211 None:intergenic 45.0%
! TGGGTTAAAGGCATAAGCTC+AGG - chr2.1:44822489-44822508 None:intergenic 45.0%
!! AAGGTACTTCTCTGGGATCA+CGG - chr2.1:44822736-44822755 None:intergenic 45.0%
!! GAAATTGGTGCTGGTGATCA+AGG + chr2.1:44822432-44822451 MS.gene98513:CDS 45.0%
!! TGATGCTGATTTCACATGGG+AGG + chr2.1:44823205-44823224 MS.gene98513:CDS 45.0%
!!! CCACTCCTATCGACTTTTGT+TGG - chr2.1:44822909-44822928 None:intergenic 45.0%
AGACCTGAGGAAATTGGTGC+TGG + chr2.1:44822423-44822442 MS.gene98513:CDS 50.0%
ATCGATACCTACGGTGGTTG+GGG + chr2.1:44822849-44822868 MS.gene98513:CDS 50.0%
ATCGATGATGATCTTGCGGC+CGG - chr2.1:44822835-44822854 None:intergenic 50.0%
ATCTGGTCGCAAAGCTTGTC+GGG - chr2.1:44822132-44822151 None:intergenic 50.0%
CAAGAACGGCATCAGAGATC+TGG - chr2.1:44822149-44822168 None:intergenic 50.0%
CATCGATACCTACGGTGGTT+GGG + chr2.1:44822848-44822867 MS.gene98513:CDS 50.0%
CATTCCTGGCCTGAAGTCAA+AGG - chr2.1:44823105-44823124 None:intergenic 50.0%
CGTCGTGCTGTGTTGAGATA+AGG - chr2.1:44822659-44822678 None:intergenic 50.0%
GAGGTTGTGAAGCCACTCAA+GGG + chr2.1:44823224-44823243 MS.gene98513:CDS 50.0%
GATCTGGTCGCAAAGCTTGT+CGG - chr2.1:44822133-44822152 None:intergenic 50.0%
GCTAACTTTCCACCCTTGAG+TGG - chr2.1:44823239-44823258 None:intergenic 50.0%
TCACCAGCACCAATTTCCTC+AGG - chr2.1:44822429-44822448 None:intergenic 50.0%
TCATCGATACCTACGGTGGT+TGG + chr2.1:44822847-44822866 MS.gene98513:CDS 50.0%
TGCTGTCTGGATCTTGCTCA+AGG - chr2.1:44822179-44822198 None:intergenic 50.0%
! GAATCCTTTGACTTCAGGCC+AGG + chr2.1:44823098-44823117 MS.gene98513:CDS 50.0%
! GTGACTTGGGTCTTTCCATC+AGG - chr2.1:44822582-44822601 None:intergenic 50.0%
!! AGGTACTTCTCTGGGATCAC+GGG - chr2.1:44822735-44822754 None:intergenic 50.0%
!! TTTCAATGACAAGGGCGCCA+TGG + chr2.1:44822611-44822630 MS.gene98513:CDS 50.0%
AACGGCCTGAAGGGTTCAAG+TGG - chr2.1:44822776-44822795 None:intergenic 55.0%
AGGACGGTATGGACACGGAT+CGG - chr2.1:44822639-44822658 None:intergenic 55.0%
ATGGACACGGATCGGAACCA+TGG - chr2.1:44822631-44822650 None:intergenic 55.0%
CCTTCAGGCCGTTTCGTCAT+CGG + chr2.1:44822783-44822802 MS.gene98513:CDS 55.0%
CGATGACGAAACGGCCTGAA+GGG - chr2.1:44822785-44822804 None:intergenic 55.0%
GAGGACCACCGATGACGAAA+CGG - chr2.1:44822794-44822813 None:intergenic 55.0%
GCAAGAACGGAACATGCCCT+TGG + chr2.1:44822550-44822569 MS.gene98513:CDS 55.0%
GGAGGTTGTGAAGCCACTCA+AGG + chr2.1:44823223-44823242 MS.gene98513:CDS 55.0%
GTTAGACCAGCGTCACCATG+AGG - chr2.1:44822813-44822832 None:intergenic 55.0%
GTTGTGAAGCCACTCAAGGG+TGG + chr2.1:44823227-44823246 MS.gene98513:CDS 55.0%
TCTGGTCGCAAAGCTTGTCG+GGG - chr2.1:44822131-44822150 None:intergenic 55.0%
TGCCCTTGGTTGAGACCTGA+TGG + chr2.1:44822564-44822583 MS.gene98513:CDS 55.0%
TTCGTCATCGGTGGTCCTCA+TGG + chr2.1:44822795-44822814 MS.gene98513:CDS 55.0%
! CATGGTGACGCTGGTCTAAC+CGG + chr2.1:44822813-44822832 MS.gene98513:CDS 55.0%
!! CTCTGGGACACCGATAGCAT+AGG - chr2.1:44823006-44823025 None:intergenic 55.0%
CCGATGACGAAACGGCCTGA+AGG - chr2.1:44822786-44822805 None:intergenic 60.0%
TACGGTGGTTGGGGTGCACA+CGG + chr2.1:44822858-44822877 MS.gene98513:CDS 60.0%
TCAGGCCGTTTCGTCATCGG+TGG + chr2.1:44822786-44822805 MS.gene98513:CDS 60.0%
! CACGGTGGTGGTGCTTTCTC+CGG + chr2.1:44822876-44822895 MS.gene98513:CDS 60.0%
GTGTGCACCCCAACCACCGT+AGG - chr2.1:44822859-44822878 None:intergenic 65.0%
! GGTGGTCCTCATGGTGACGC+TGG + chr2.1:44822804-44822823 MS.gene98513:CDS 65.0%
GGTGGTTGGGGTGCACACGG+TGG + chr2.1:44822861-44822880 MS.gene98513:CDS 70.0%
GGTTGGGGTGCACACGGTGG+TGG + chr2.1:44822864-44822883 MS.gene98513:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 44822078 44823268 44822078 ID=MS.gene98513
chr2.1 mRNA 44822078 44823268 44822078 ID=MS.gene98513.t1;Parent=MS.gene98513
chr2.1 exon 44822078 44823268 44822078 ID=MS.gene98513.t1.exon1;Parent=MS.gene98513.t1
chr2.1 CDS 44822078 44823268 44822078 ID=cds.MS.gene98513.t1;Parent=MS.gene98513.t1
Gene Sequence

>MS.gene98513

ATGGCAACAGAAACTTTCCTATACACATCTGAATCTGTGAACGAGGGACACCCCGACAAGCTTTGCGACCAGATCTCTGATGCCGTTCTTGATGCTTGCCTTGAGCAAGATCCAGACAGCAAAGTTGCATGTGAAACTTGCACAAAGACCAACATGGTTATGGTCTTTGGTGAGATCACAACAAAAGCAAATGTTGACTATGAAAAGATTGTCCGTAACACATGCAGGAACATAGGTTTTGTTTCAGACGATGTTGGTCTTGATGCTGACAACTGCAAAGTCCTTGTCAACATTGAACAACAGAGTCCTGATATTGCTCAAGGTGTTCATGGCCATCTTACAAAAAGACCTGAGGAAATTGGTGCTGGTGATCAAGGTCACATGTTCGGGTATGCTACCGATGAAACACCTGAGCTTATGCCTTTAACCCATGTTCTTGCAACCAAGTTAGGAGCTAAGCTCACTGAAGTTCGCAAGAACGGAACATGCCCTTGGTTGAGACCTGATGGAAAGACCCAAGTCACTATTGAGTATTTCAATGACAAGGGCGCCATGGTTCCGATCCGTGTCCATACCGTCCTTATCTCAACACAGCACGACGAAACTGTGACCAACGATGAAATTGCAGCTGATTTGAAAGAACATGTGATCAAGCCCGTGATCCCAGAGAAGTACCTTGATGAGAAAACCATCTTCCACTTGAACCCTTCAGGCCGTTTCGTCATCGGTGGTCCTCATGGTGACGCTGGTCTAACCGGCCGCAAGATCATCATCGATACCTACGGTGGTTGGGGTGCACACGGTGGTGGTGCTTTCTCCGGTAAAGATCCAACAAAAGTCGATAGGAGTGGAGCTTACATTGTGAGACAAGCTGCAAAGAGTATTGTTGCTAATGGACTTGCTAGAAGGTGCATTGTTCAAGTTTCCTATGCTATCGGTGTCCCAGAGCCATTGTCTGTGTTTGTTGATTCTTACGGTACCGGAAAGATCCCTGATAAGGAAATCCTTAACATTGTGAAAGAATCCTTTGACTTCAGGCCAGGAATGATCTCTATTAACCTTGATCTTAAGAGGGGTGGAAATAACAGGTTTTTGAAGACTGCTGCTTATGGTCATTTTGGTAGAGATGATGCTGATTTCACATGGGAGGTTGTGAAGCCACTCAAGGGTGGAAAGTTAGCCACTGCCTAA
Protein sequence

>MS.gene98513.t1

MATETFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYFNDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILNIVKESFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGKLATA