AlfalfaGEDB | MS.gene98513

M. sativa cultivar XinJiangDaYe / MS.gene98513

KEGG: K00789
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004478 GO:0005488 GO:0005524 GO:0006556 GO:0006732 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016740 GO:0016765 GO:0017076 GO:0017144 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044237 GO:0044249 GO:0044272 GO:0046500 GO:0051186 GO:0051188 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901576
PFAM: PF00438.23 PF02772.19 PF02773.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98513.t1	A4ULF8.1	99.5	396	2	0	1	396	1	396	2.10E-231	811.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98513.t1	A4ULF8	99.5	396	2	0	1	396	1	396	5.0e-234	811.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98513.t1	A0A072V8Q4	99.5	396	2	0	1	396	1	396	3.4e-231	810.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene050426	MS.gene98513	PPI
MS.gene072659	MS.gene98513	PPI
MS.gene28651	MS.gene98513	PPI
MS.gene28853	MS.gene98513	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene98513.t1	MTR_2g046710	99.495	396	2	1	396	1	396	816
MS.gene98513.t1	MTR_4g123810	93.878	392	24	1	392	1	392	743
MS.gene98513.t1	MTR_7g110310	93.573	389	25	4	392	3	391	740
MS.gene98513.t1	MTR_7g102120	90.674	386	36	4	389	2	387	706
MS.gene98513.t1	MTR_1g063060	88.083	386	46	4	389	2	387	695
MS.gene98513.t1	MTR_1g063060	88.083	386	46	4	389	20	405	695

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene98513.t1	AT3G17390	94.615	390	21	4	393	2	391	746
MS.gene98513.t1	AT1G02500	93.059	389	27	4	392	2	390	727
MS.gene98513.t1	AT1G02500	93.059	389	27	4	392	2	390	727
MS.gene98513.t1	AT4G01850	91.003	389	35	4	392	2	390	722
MS.gene98513.t1	AT4G01850	91.003	389	35	4	392	2	390	722
MS.gene98513.t1	AT2G36880	90.674	386	36	4	389	2	387	709
MS.gene98513.t1	AT2G36880	90.674	386	36	4	389	2	387	709

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Find 114 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTGATCTTAAGAGGGG+TGG	0.538816	2.1:+44823134	MS.gene98513:CDS
AACGGCCTGAAGGGTTCAAG+TGG	0.607726	2.1:-44822773	None:intergenic
AACTTGCACAAAGACCAACA+TGG	0.753910	2.1:+44822212	MS.gene98513:CDS
AAGATCATCATCGATACCTA+CGG	0.632923	2.1:+44822840	MS.gene98513:CDS
AAGATCCAACAAAAGTCGAT+AGG	0.589834	2.1:+44822901	MS.gene98513:CDS
AAGGTACTTCTCTGGGATCA+CGG	0.517512	2.1:-44822733	None:intergenic
ACAAACACAGACAATGGCTC+TGG	0.491840	2.1:-44823020	None:intergenic
ACATCTGAATCTGTGAACGA+GGG	0.708400	2.1:+44822102	MS.gene98513:CDS
ACCAAAGACCATAACCATGT+TGG	0.617396	2.1:-44822226	None:intergenic
ACCAACATGGTTATGGTCTT+TGG	0.296902	2.1:+44822225	MS.gene98513:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGATTCTTTCACAATGTTA+AGG	-	chr2.1:44823085-44823104	None:intergenic	30.0%
ATGTTAAGGATTTCCTTATC+AGG	-	chr2.1:44823071-44823090	None:intergenic	30.0%
ATTAACCTTGATCTTAAGAG+GGG	+	chr2.1:44823131-44823150	MS.gene98513:CDS	30.0%
CTATTAACCTTGATCTTAAG+AGG	+	chr2.1:44823129-44823148	MS.gene98513:CDS	30.0%
GAAATACTCAATAGTGACTT+GGG	-	chr2.1:44822595-44822614	None:intergenic	30.0%
TGAAATACTCAATAGTGACT+TGG	-	chr2.1:44822596-44822615	None:intergenic	30.0%
TGTTAAGGATTTCCTTATCA+GGG	-	chr2.1:44823070-44823089	None:intergenic	30.0%
AAGATCATCATCGATACCTA+CGG	+	chr2.1:44822840-44822859	MS.gene98513:CDS	35.0%
AAGATCCAACAAAAGTCGAT+AGG	+	chr2.1:44822901-44822920	MS.gene98513:CDS	35.0%
ACAAAAAGACCTGAGGAAAT+TGG	+	chr2.1:44822417-44822436	MS.gene98513:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	44822078	44823268	44822078	ID=MS.gene98513
chr2.1	mRNA	44822078	44823268	44822078	ID=MS.gene98513.t1;Parent=MS.gene98513
chr2.1	exon	44822078	44823268	44822078	ID=MS.gene98513.t1.exon1;Parent=MS.gene98513.t1
chr2.1	CDS	44822078	44823268	44822078	ID=cds.MS.gene98513.t1;Parent=MS.gene98513.t1

Gene Sequence

>MS.gene98513

ATGGCAACAGAAACTTTCCTATACACATCTGAATCTGTGAACGAGGGACACCCCGACAAGCTTTGCGACCAGATCTCTGATGCCGTTCTTGATGCTTGCCTTGAGCAAGATCCAGACAGCAAAGTTGCATGTGAAACTTGCACAAAGACCAACATGGTTATGGTCTTTGGTGAGATCACAACAAAAGCAAATGTTGACTATGAAAAGATTGTCCGTAACACATGCAGGAACATAGGTTTTGTTTCAGACGATGTTGGTCTTGATGCTGACAACTGCAAAGTCCTTGTCAACATTGAACAACAGAGTCCTGATATTGCTCAAGGTGTTCATGGCCATCTTACAAAAAGACCTGAGGAAATTGGTGCTGGTGATCAAGGTCACATGTTCGGGTATGCTACCGATGAAACACCTGAGCTTATGCCTTTAACCCATGTTCTTGCAACCAAGTTAGGAGCTAAGCTCACTGAAGTTCGCAAGAACGGAACATGCCCTTGGTTGAGACCTGATGGAAAGACCCAAGTCACTATTGAGTATTTCAATGACAAGGGCGCCATGGTTCCGATCCGTGTCCATACCGTCCTTATCTCAACACAGCACGACGAAACTGTGACCAACGATGAAATTGCAGCTGATTTGAAAGAACATGTGATCAAGCCCGTGATCCCAGAGAAGTACCTTGATGAGAAAACCATCTTCCACTTGAACCCTTCAGGCCGTTTCGTCATCGGTGGTCCTCATGGTGACGCTGGTCTAACCGGCCGCAAGATCATCATCGATACCTACGGTGGTTGGGGTGCACACGGTGGTGGTGCTTTCTCCGGTAAAGATCCAACAAAAGTCGATAGGAGTGGAGCTTACATTGTGAGACAAGCTGCAAAGAGTATTGTTGCTAATGGACTTGCTAGAAGGTGCATTGTTCAAGTTTCCTATGCTATCGGTGTCCCAGAGCCATTGTCTGTGTTTGTTGATTCTTACGGTACCGGAAAGATCCCTGATAAGGAAATCCTTAACATTGTGAAAGAATCCTTTGACTTCAGGCCAGGAATGATCTCTATTAACCTTGATCTTAAGAGGGGTGGAAATAACAGGTTTTTGAAGACTGCTGCTTATGGTCATTTTGGTAGAGATGATGCTGATTTCACATGGGAGGTTGTGAAGCCACTCAAGGGTGGAAAGTTAGCCACTGCCTAA

Protein sequence

>MS.gene98513.t1

MATETFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYFNDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILNIVKESFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGKLATA