Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98637.t1 | XP_013455748.1 | 97.5 | 314 | 8 | 0 | 1 | 314 | 47 | 360 | 2.50E-171 | 611.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98637.t1 | Q54NS9 | 31.7 | 331 | 190 | 9 | 1 | 300 | 71 | 396 | 3.8e-35 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98637.t1 | A0A072UJ51 | 97.5 | 314 | 8 | 0 | 1 | 314 | 47 | 360 | 1.8e-171 | 611.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene98637 | 0.819446 | 1.16E-52 | -1.69E-46 |
| MS.gene051959 | MS.gene98637 | 0.802896 | 4.51E-49 | -1.69E-46 |
| MS.gene051960 | MS.gene98637 | 0.806176 | 9.34E-50 | -1.69E-46 |
| MS.gene052053 | MS.gene98637 | 0.806563 | 7.74E-50 | -1.69E-46 |
| MS.gene056530 | MS.gene98637 | 0.807707 | 4.43E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98637.t1 | MTR_4g051622 | 97.452 | 314 | 8 | 0 | 1 | 314 | 47 | 360 | 0.0 | 628 |
| MS.gene98637.t1 | MTR_4g051645 | 66.987 | 312 | 101 | 2 | 1 | 311 | 50 | 360 | 1.54e-154 | 437 |
| MS.gene98637.t1 | MTR_2g061440 | 55.000 | 80 | 36 | 0 | 92 | 171 | 193 | 272 | 4.04e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98637.t1 | AT3G44190 | 63.344 | 311 | 113 | 1 | 1 | 311 | 1 | 310 | 4.37e-147 | 416 |
| MS.gene98637.t1 | AT5G22140 | 64.309 | 311 | 110 | 1 | 1 | 311 | 1 | 310 | 6.10e-147 | 416 |
| MS.gene98637.t1 | AT3G44190 | 63.344 | 311 | 113 | 1 | 1 | 311 | 55 | 364 | 2.64e-146 | 416 |
| MS.gene98637.t1 | AT5G22140 | 64.309 | 311 | 110 | 1 | 1 | 311 | 55 | 364 | 4.59e-146 | 416 |
Find 60 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAATAGTTTCAGATTCT+TGG | 0.196415 | 4.2:-50611984 | None:intergenic |
| AATGTCTTTCTTGAAGCTTT+TGG | 0.265463 | 4.2:-50611283 | None:intergenic |
| ACTCCTTCACAAATGAAAAT+AGG | 0.292255 | 4.2:+50611362 | MS.gene98637:CDS |
| CTTCAAGAAAGACATTAAAA+TGG | 0.321115 | 4.2:+50611290 | MS.gene98637:CDS |
| ACAATTGTTGGAAGACTTCC+TGG | 0.349182 | 4.2:+50612112 | MS.gene98637:CDS |
| TTCAGATTCAGTTATGTTGA+TGG | 0.355713 | 4.2:-50610643 | None:intergenic |
| GGAGCGAAAGAACGTAAATT+AGG | 0.359944 | 4.2:+50612013 | MS.gene98637:CDS |
| TCAAGATTGCTAGAATATAT+TGG | 0.361205 | 4.2:+50611259 | MS.gene98637:CDS |
| CCAAGTGAAACAATAGATAT+TGG | 0.377879 | 4.2:-50612055 | None:intergenic |
| TTTCCTTTCATGACAATTGT+TGG | 0.378561 | 4.2:+50612100 | MS.gene98637:CDS |
| GGGAAAACAAGAAAGGGATT+AGG | 0.385570 | 4.2:+50612163 | MS.gene98637:CDS |
| ATTGCTTACCTCCTTTGTAT+TGG | 0.393585 | 4.2:-50610764 | None:intergenic |
| GATTATCTTGTTATCGCAAC+TGG | 0.394119 | 4.2:+50610699 | MS.gene98637:CDS |
| GGAAAACAAGAAAGGGATTA+GGG | 0.398328 | 4.2:+50612164 | MS.gene98637:CDS |
| TATTGGTGGTTGTGCCTTGT+AGG | 0.413298 | 4.2:-50612038 | None:intergenic |
| CTCTCAAGTATTCATCAACT+TGG | 0.419612 | 4.2:-50611513 | None:intergenic |
| AGTCAGGAGATTTGTTTGTT+GGG | 0.428035 | 4.2:+50612143 | MS.gene98637:CDS |
| TATCTATTGTTTCACTTGGA+AGG | 0.431104 | 4.2:+50612059 | MS.gene98637:CDS |
| TTTCGCTATTGGAGACATTA+CGG | 0.432085 | 4.2:+50611555 | MS.gene98637:CDS |
| AAGTCAGGAGATTTGTTTGT+TGG | 0.437062 | 4.2:+50612142 | MS.gene98637:CDS |
| GTTTGTTGGGAAAACAAGAA+AGG | 0.452444 | 4.2:+50612156 | MS.gene98637:CDS |
| ATTGTTGGTGGAGGTCCAAC+TGG | 0.452939 | 4.2:+50611169 | MS.gene98637:CDS |
| AATCTGAAACTATTGATAGA+AGG | 0.453316 | 4.2:+50611989 | MS.gene98637:CDS |
| TTTGTTGGGAAAACAAGAAA+GGG | 0.460435 | 4.2:+50612157 | MS.gene98637:CDS |
| CTTCCTGGTATGATCAAGTC+AGG | 0.460740 | 4.2:+50612127 | MS.gene98637:CDS |
| CCAATATCTATTGTTTCACT+TGG | 0.467044 | 4.2:+50612055 | MS.gene98637:CDS |
| TGCGATAACAAGATAATCAT+AGG | 0.469385 | 4.2:-50610694 | None:intergenic |
| CATAGAGAATATTTCACAAA+AGG | 0.477184 | 4.2:+50610600 | MS.gene98637:CDS |
| CATTAAAATGGCTTCAATCA+AGG | 0.485208 | 4.2:+50611302 | MS.gene98637:CDS |
| AGGACTTATCAAACTTCGGT+TGG | 0.486951 | 4.2:+50611382 | MS.gene98637:CDS |
| AAAGTGACTATAGTGCATAA+AGG | 0.487929 | 4.2:+50611235 | MS.gene98637:CDS |
| CCTAGCCATGCTGTGGAAAG+TGG | 0.493960 | 4.2:-50611448 | None:intergenic |
| AAAGATGATTTGGATGGTCA+TGG | 0.509883 | 4.2:+50611484 | MS.gene98637:CDS |
| GATGAATACTTGAGAGTGAA+GGG | 0.516573 | 4.2:+50611520 | MS.gene98637:CDS |
| GATCACTGTCCTTTCTGCGA+AGG | 0.531450 | 4.2:-50610574 | None:intergenic |
| GTTTCACTTGGAAGGAAACA+TGG | 0.536683 | 4.2:+50612067 | MS.gene98637:CDS |
| TCTGAAGTCTTCACTGCTGA+TGG | 0.538947 | 4.2:+50610660 | MS.gene98637:CDS |
| CTTCCAACAATTGTCATGAA+AGG | 0.545832 | 4.2:-50612103 | None:intergenic |
| TGATGAATACTTGAGAGTGA+AGG | 0.546458 | 4.2:+50611519 | MS.gene98637:CDS |
| ACTGTCCTTTCTGCGAAGGA+TGG | 0.552774 | 4.2:-50610570 | None:intergenic |
| AAATAGGACTTATCAAACTT+CGG | 0.554684 | 4.2:+50611378 | MS.gene98637:CDS |
| TGGAGCCATCCTTCGCAGAA+AGG | 0.564663 | 4.2:+50610565 | MS.gene98637:CDS |
| AGTGAAACAATAGATATTGG+TGG | 0.570389 | 4.2:-50612052 | None:intergenic |
| TCTCCTGACTTGATCATACC+AGG | 0.577444 | 4.2:-50612130 | None:intergenic |
| CCACTTTCCACAGCATGGCT+AGG | 0.590873 | 4.2:+50611448 | MS.gene98637:CDS |
| GCTGCTAGCTCAACACCAGT+TGG | 0.599083 | 4.2:-50611184 | None:intergenic |
| AATACTTGAGAGTGAAGGGA+AGG | 0.600149 | 4.2:+50611524 | MS.gene98637:CDS |
| CTGAAACTATTGATAGAAGG+AGG | 0.602874 | 4.2:+50611992 | MS.gene98637:CDS |
| GAAAGACTTGACCAATACAA+AGG | 0.625608 | 4.2:+50610753 | MS.gene98637:CDS |
| AAGATGATTTGGATGGTCAT+GGG | 0.626015 | 4.2:+50611485 | MS.gene98637:CDS |
| AGTTTCACCTAGCCATGCTG+TGG | 0.627017 | 4.2:-50611455 | None:intergenic |
| GATAATCATAGGTGATCTGA+CGG | 0.632076 | 4.2:-50610683 | None:intergenic |
| GGAAACCACTTTCCACAGCA+TGG | 0.632481 | 4.2:+50611443 | MS.gene98637:CDS |
| ACGTAAATTAGGTACCTACA+AGG | 0.632721 | 4.2:+50612024 | MS.gene98637:CDS |
| TGAGCTAGCAGCAGAGATTG+CGG | 0.644801 | 4.2:+50611195 | MS.gene98637:CDS |
| TGATGGCACTTGATATAACA+AGG | 0.655923 | 4.2:-50610626 | None:intergenic |
| AGACTTGACCAATACAAAGG+AGG | 0.681103 | 4.2:+50610756 | MS.gene98637:CDS |
| ATGATTTGGATGGTCATGGG+AGG | 0.683773 | 4.2:+50611488 | MS.gene98637:CDS |
| AAACAAGGAGTGTATGCACA+AGG | 0.686146 | 4.2:+50611944 | MS.gene98637:CDS |
| ATGTTACAGGAAATCAAACA+AGG | 0.698106 | 4.2:+50611929 | MS.gene98637:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGAAATATATGTTAC+AGG | + | chr4.2:50611916-50611935 | MS.gene98637:intron | 15.0% |
| !!! | AACTTTTTTGAAAGATGATT+TGG | + | chr4.2:50611474-50611493 | MS.gene98637:CDS | 20.0% |
| !!! | ATACACATTTTCTATGTATA+GGG | + | chr4.2:50611422-50611441 | MS.gene98637:CDS | 20.0% |
| ! | AAATAGGACTTATCAAACTT+CGG | + | chr4.2:50611378-50611397 | MS.gene98637:CDS | 25.0% |
| ! | CATAGAGAATATTTCACAAA+AGG | + | chr4.2:50610600-50610619 | MS.gene98637:CDS | 25.0% |
| ! | CTTCAAGAAAGACATTAAAA+TGG | + | chr4.2:50611290-50611309 | MS.gene98637:CDS | 25.0% |
| ! | GGAATTGTTAATTAATTGCA+TGG | - | chr4.2:50610829-50610848 | None:intergenic | 25.0% |
| ! | TATCAATAGTTTCAGATTCT+TGG | - | chr4.2:50611987-50612006 | None:intergenic | 25.0% |
| ! | TCAAGATTGCTAGAATATAT+TGG | + | chr4.2:50611259-50611278 | MS.gene98637:CDS | 25.0% |
| ! | TTAACATATGCGTATTATTG+CGG | - | chr4.2:50611877-50611896 | None:intergenic | 25.0% |
| !! | AATCTGAAACTATTGATAGA+AGG | + | chr4.2:50611989-50612008 | MS.gene98637:CDS | 25.0% |
| !! | CTTTTGTGAAATATTCTCTA+TGG | - | chr4.2:50610602-50610621 | None:intergenic | 25.0% |
| !! | GATACACATTTTCTATGTAT+AGG | + | chr4.2:50611421-50611440 | MS.gene98637:CDS | 25.0% |
| !!! | ACTATAGTCACTTTTTTATC+AGG | - | chr4.2:50611229-50611248 | None:intergenic | 25.0% |
| !!! | TTTTTGAAAGATGATTTGGA+TGG | + | chr4.2:50611478-50611497 | MS.gene98637:CDS | 25.0% |
| AAAGTGACTATAGTGCATAA+AGG | + | chr4.2:50611235-50611254 | MS.gene98637:CDS | 30.0% | |
| ACTCCTTCACAAATGAAAAT+AGG | + | chr4.2:50611362-50611381 | MS.gene98637:CDS | 30.0% | |
| AGTGAAACAATAGATATTGG+TGG | - | chr4.2:50612055-50612074 | None:intergenic | 30.0% | |
| ATGTTACAGGAAATCAAACA+AGG | + | chr4.2:50611929-50611948 | MS.gene98637:intron | 30.0% | |
| CATTAAAATGGCTTCAATCA+AGG | + | chr4.2:50611302-50611321 | MS.gene98637:CDS | 30.0% | |
| CCAAGTGAAACAATAGATAT+TGG | - | chr4.2:50612058-50612077 | None:intergenic | 30.0% | |
| CCAATATCTATTGTTTCACT+TGG | + | chr4.2:50612055-50612074 | MS.gene98637:CDS | 30.0% | |
| GCAATAATACGCATATGTTA+AGG | + | chr4.2:50611876-50611895 | MS.gene98637:intron | 30.0% | |
| TAAAAGACGACGAATTGAAT+TGG | - | chr4.2:50611606-50611625 | None:intergenic | 30.0% | |
| TATCTATTGTTTCACTTGGA+AGG | + | chr4.2:50612059-50612078 | MS.gene98637:CDS | 30.0% | |
| TCGATTTCATATGAGTGATA+AGG | + | chr4.2:50611090-50611109 | MS.gene98637:intron | 30.0% | |
| TGCGATAACAAGATAATCAT+AGG | - | chr4.2:50610697-50610716 | None:intergenic | 30.0% | |
| TTCAGATTCAGTTATGTTGA+TGG | - | chr4.2:50610646-50610665 | None:intergenic | 30.0% | |
| TTTCCTTTCATGACAATTGT+TGG | + | chr4.2:50612100-50612119 | MS.gene98637:CDS | 30.0% | |
| TTTGTTGGGAAAACAAGAAA+GGG | + | chr4.2:50612157-50612176 | MS.gene98637:CDS | 30.0% | |
| ! | AATGTCTTTCTTGAAGCTTT+TGG | - | chr4.2:50611286-50611305 | None:intergenic | 30.0% |
| ! | AGTCCTATTTTCATTTGTGA+AGG | - | chr4.2:50611368-50611387 | None:intergenic | 30.0% |
| ACGTAAATTAGGTACCTACA+AGG | + | chr4.2:50612024-50612043 | MS.gene98637:CDS | 35.0% | |
| ATTGCTTACCTCCTTTGTAT+TGG | - | chr4.2:50610767-50610786 | None:intergenic | 35.0% | |
| CAGAATCTATCCCAAAAACA+AGG | + | chr4.2:50610727-50610746 | MS.gene98637:CDS | 35.0% | |
| CTCTCAAGTATTCATCAACT+TGG | - | chr4.2:50611516-50611535 | None:intergenic | 35.0% | |
| CTGAAACTATTGATAGAAGG+AGG | + | chr4.2:50611992-50612011 | MS.gene98637:CDS | 35.0% | |
| CTTCCAACAATTGTCATGAA+AGG | - | chr4.2:50612106-50612125 | None:intergenic | 35.0% | |
| GAAAGACTTGACCAATACAA+AGG | + | chr4.2:50610753-50610772 | MS.gene98637:CDS | 35.0% | |
| GATAATCATAGGTGATCTGA+CGG | - | chr4.2:50610686-50610705 | None:intergenic | 35.0% | |
| GATGAATACTTGAGAGTGAA+GGG | + | chr4.2:50611520-50611539 | MS.gene98637:CDS | 35.0% | |
| GGAAAACAAGAAAGGGATTA+GGG | + | chr4.2:50612164-50612183 | MS.gene98637:CDS | 35.0% | |
| TGATGAATACTTGAGAGTGA+AGG | + | chr4.2:50611519-50611538 | MS.gene98637:CDS | 35.0% | |
| TGATGGCACTTGATATAACA+AGG | - | chr4.2:50610629-50610648 | None:intergenic | 35.0% | |
| TTTCGCTATTGGAGACATTA+CGG | + | chr4.2:50611555-50611574 | MS.gene98637:CDS | 35.0% | |
| ! | AAAGATGATTTGGATGGTCA+TGG | + | chr4.2:50611484-50611503 | MS.gene98637:CDS | 35.0% |
| ! | AACTGTCACTTGACACAAAT+AGG | - | chr4.2:50611060-50611079 | None:intergenic | 35.0% |
| ! | AAGATGATTTGGATGGTCAT+GGG | + | chr4.2:50611485-50611504 | MS.gene98637:CDS | 35.0% |
| ! | AAGTCAGGAGATTTGTTTGT+TGG | + | chr4.2:50612142-50612161 | MS.gene98637:CDS | 35.0% |
| ! | ACTGTCACTTGACACAAATA+GGG | - | chr4.2:50611059-50611078 | None:intergenic | 35.0% |
| ! | AGTCAGGAGATTTGTTTGTT+GGG | + | chr4.2:50612143-50612162 | MS.gene98637:CDS | 35.0% |
| ! | CGTCGTCTTTTATTATCTCT+AGG | + | chr4.2:50611614-50611633 | MS.gene98637:intron | 35.0% |
| ! | GATTATCTTGTTATCGCAAC+TGG | + | chr4.2:50610699-50610718 | MS.gene98637:CDS | 35.0% |
| ! | GTTTGTTGGGAAAACAAGAA+AGG | + | chr4.2:50612156-50612175 | MS.gene98637:CDS | 35.0% |
| !! | ACGACGAATTGAATTGGTTT+TGG | - | chr4.2:50611600-50611619 | None:intergenic | 35.0% |
| !!! | AACTGTTATTTTCCGCTATC+TGG | - | chr4.2:50611849-50611868 | None:intergenic | 35.0% |
| !!! | ACTGTTATTTTCCGCTATCT+GGG | - | chr4.2:50611848-50611867 | None:intergenic | 35.0% |
| !!! | AGTCTTTCAGTCCTTGTTTT+TGG | - | chr4.2:50610741-50610760 | None:intergenic | 35.0% |
| !!! | GTCTTTCAGTCCTTGTTTTT+GGG | - | chr4.2:50610740-50610759 | None:intergenic | 35.0% |
| AATACTTGAGAGTGAAGGGA+AGG | + | chr4.2:50611524-50611543 | MS.gene98637:CDS | 40.0% | |
| ACAATTGTTGGAAGACTTCC+TGG | + | chr4.2:50612112-50612131 | MS.gene98637:CDS | 40.0% | |
| AGACTTGACCAATACAAAGG+AGG | + | chr4.2:50610756-50610775 | MS.gene98637:CDS | 40.0% | |
| AGGACTTATCAAACTTCGGT+TGG | + | chr4.2:50611382-50611401 | MS.gene98637:CDS | 40.0% | |
| CATGCAGTGTTGTCAAATAG+TGG | + | chr4.2:50611657-50611676 | MS.gene98637:intron | 40.0% | |
| CTATTGTCAATCCCAGATAG+CGG | + | chr4.2:50611834-50611853 | MS.gene98637:intron | 40.0% | |
| CTGCATCAATTGCTAGAACT+TGG | + | chr4.2:50610800-50610819 | MS.gene98637:intron | 40.0% | |
| GATACGCTATTTAGCACAGA+TGG | + | chr4.2:50611718-50611737 | MS.gene98637:intron | 40.0% | |
| GGAGCGAAAGAACGTAAATT+AGG | + | chr4.2:50612013-50612032 | MS.gene98637:CDS | 40.0% | |
| GGGAAAACAAGAAAGGGATT+AGG | + | chr4.2:50612163-50612182 | MS.gene98637:CDS | 40.0% | |
| GTCAAATAGTGGCATAGTAG+CGG | + | chr4.2:50611668-50611687 | MS.gene98637:intron | 40.0% | |
| GTTGTTTGGTTGCGATTGAA+CGG | + | chr4.2:50610877-50610896 | MS.gene98637:intron | 40.0% | |
| GTTTCACTTGGAAGGAAACA+TGG | + | chr4.2:50612067-50612086 | MS.gene98637:CDS | 40.0% | |
| ! | AAACAAGGAGTGTATGCACA+AGG | + | chr4.2:50611944-50611963 | MS.gene98637:CDS | 40.0% |
| ! | AGGAACAACGTTTTCGCTAT+TGG | + | chr4.2:50611544-50611563 | MS.gene98637:CDS | 40.0% |
| !!! | CGTTCAGTTTTGATTGTTGG+TGG | + | chr4.2:50611157-50611176 | MS.gene98637:CDS | 40.0% |
| !!! | GCACGTTCAGTTTTGATTGT+TGG | + | chr4.2:50611154-50611173 | MS.gene98637:CDS | 40.0% |
| !!! | TCAGTTTTGATTGTTGGTGG+AGG | + | chr4.2:50611160-50611179 | MS.gene98637:CDS | 40.0% |
| CAAGCACAATAGTGGTCGTT+GGG | - | chr4.2:50610981-50611000 | None:intergenic | 45.0% | |
| CACAGATGGTTTCCAGATAG+TGG | + | chr4.2:50611732-50611751 | MS.gene98637:intron | 45.0% | |
| CTGTGCTAAATAGCGTATCG+TGG | - | chr4.2:50611717-50611736 | None:intergenic | 45.0% | |
| CTTCCTGGTATGATCAAGTC+AGG | + | chr4.2:50612127-50612146 | MS.gene98637:CDS | 45.0% | |
| TGGGATTGACAATAGGTGAC+TGG | - | chr4.2:50611829-50611848 | None:intergenic | 45.0% | |
| ! | ATGATTTGGATGGTCATGGG+AGG | + | chr4.2:50611488-50611507 | MS.gene98637:CDS | 45.0% |
| ! | ATGCTGACTGCGTCAATGAA+TGG | - | chr4.2:50610850-50610869 | None:intergenic | 45.0% |
| ! | CGCTATCTGGGATTGACAAT+AGG | - | chr4.2:50611836-50611855 | None:intergenic | 45.0% |
| ! | GACTGGTCAATCTCAGATAG+CGG | - | chr4.2:50611812-50611831 | None:intergenic | 45.0% |
| ! | TATTGGTGGTTGTGCCTTGT+AGG | - | chr4.2:50612041-50612060 | None:intergenic | 45.0% |
| ! | TCTCCTGACTTGATCATACC+AGG | - | chr4.2:50612133-50612152 | None:intergenic | 45.0% |
| ! | TCTGAAGTCTTCACTGCTGA+TGG | + | chr4.2:50610660-50610679 | MS.gene98637:CDS | 45.0% |
| !! | TCAGCATGTTGGTGGTTGTT+TGG | + | chr4.2:50610863-50610882 | MS.gene98637:intron | 45.0% |
| ACGCTGCTTAAGCCACTATC+TGG | - | chr4.2:50611747-50611766 | None:intergenic | 50.0% | |
| ACTGTCCTTTCTGCGAAGGA+TGG | - | chr4.2:50610573-50610592 | None:intergenic | 50.0% | |
| AGTTTCACCTAGCCATGCTG+TGG | - | chr4.2:50611458-50611477 | None:intergenic | 50.0% | |
| CATTGACGCAGTCAGCATGT+TGG | + | chr4.2:50610852-50610871 | MS.gene98637:intron | 50.0% | |
| GATCACTGTCCTTTCTGCGA+AGG | - | chr4.2:50610577-50610596 | None:intergenic | 50.0% | |
| GCAAGCACAATAGTGGTCGT+TGG | - | chr4.2:50610982-50611001 | None:intergenic | 50.0% | |
| GGAAACCACTTTCCACAGCA+TGG | + | chr4.2:50611443-50611462 | MS.gene98637:CDS | 50.0% | |
| TCGCACAGCAAGCACAATAG+TGG | - | chr4.2:50610989-50611008 | None:intergenic | 50.0% | |
| TGAGCTAGCAGCAGAGATTG+CGG | + | chr4.2:50611195-50611214 | MS.gene98637:CDS | 50.0% | |
| ! | ATTGTTGGTGGAGGTCCAAC+TGG | + | chr4.2:50611169-50611188 | MS.gene98637:CDS | 50.0% |
| CCACTTTCCACAGCATGGCT+AGG | + | chr4.2:50611448-50611467 | MS.gene98637:CDS | 55.0% | |
| CCTAGCCATGCTGTGGAAAG+TGG | - | chr4.2:50611451-50611470 | None:intergenic | 55.0% | |
| GCTGCTAGCTCAACACCAGT+TGG | - | chr4.2:50611187-50611206 | None:intergenic | 55.0% | |
| TGACGCAGTCAGCATGTTGG+TGG | + | chr4.2:50610855-50610874 | MS.gene98637:intron | 55.0% | |
| TGGAGCCATCCTTCGCAGAA+AGG | + | chr4.2:50610565-50610584 | MS.gene98637:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 50610561 | 50612213 | 50610561 | ID=MS.gene98637 |
| chr4.2 | mRNA | 50610561 | 50612213 | 50610561 | ID=MS.gene98637.t1;Parent=MS.gene98637 |
| chr4.2 | exon | 50610561 | 50610777 | 50610561 | ID=MS.gene98637.t1.exon1;Parent=MS.gene98637.t1 |
| chr4.2 | CDS | 50610561 | 50610777 | 50610561 | ID=cds.MS.gene98637.t1;Parent=MS.gene98637.t1 |
| chr4.2 | exon | 50611134 | 50611585 | 50611134 | ID=MS.gene98637.t1.exon2;Parent=MS.gene98637.t1 |
| chr4.2 | CDS | 50611134 | 50611585 | 50611134 | ID=cds.MS.gene98637.t1;Parent=MS.gene98637.t1 |
| chr4.2 | exon | 50611938 | 50612213 | 50611938 | ID=MS.gene98637.t1.exon3;Parent=MS.gene98637.t1 |
| chr4.2 | CDS | 50611938 | 50612213 | 50611938 | ID=cds.MS.gene98637.t1;Parent=MS.gene98637.t1 |
| Gene Sequence |
| Protein sequence |
