Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98925.t1 | XP_003626350.1 | 84 | 581 | 85 | 3 | 1 | 573 | 1 | 581 | 3.10E-276 | 960.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98925.t1 | Q5XQC7 | 65.8 | 582 | 184 | 5 | 1 | 568 | 1 | 581 | 1.6e-217 | 756.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98925.t1 | A2Q3G1 | 84.0 | 581 | 85 | 3 | 1 | 573 | 1 | 581 | 2.2e-276 | 960.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000424 | MS.gene98925 | PPI |
| MS.gene98925 | MS.gene70112 | PPI |
| MS.gene030511 | MS.gene98925 | PPI |
| MS.gene98925 | MS.gene49772 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98925.t1 | MTR_7g114130 | 83.993 | 581 | 85 | 3 | 1 | 573 | 1 | 581 | 0.0 | 997 |
| MS.gene98925.t1 | MTR_1g048160 | 81.771 | 576 | 101 | 2 | 1 | 572 | 1 | 576 | 0.0 | 976 |
| MS.gene98925.t1 | MTR_8g096190 | 58.651 | 578 | 225 | 4 | 1 | 565 | 1 | 577 | 0.0 | 686 |
| MS.gene98925.t1 | MTR_8g096190 | 57.818 | 550 | 218 | 4 | 1 | 537 | 1 | 549 | 0.0 | 641 |
| MS.gene98925.t1 | MTR_8g096190 | 57.006 | 521 | 210 | 4 | 1 | 508 | 1 | 520 | 0.0 | 596 |
| MS.gene98925.t1 | MTR_7g114100 | 70.439 | 433 | 91 | 6 | 145 | 573 | 13 | 412 | 0.0 | 590 |
| MS.gene98925.t1 | MTR_7g033100 | 30.545 | 275 | 138 | 11 | 330 | 574 | 107 | 358 | 2.59e-22 | 100 |
| MS.gene98925.t1 | MTR_7g033100 | 30.545 | 275 | 138 | 11 | 330 | 574 | 107 | 358 | 4.06e-22 | 99.4 |
| MS.gene98925.t1 | MTR_3g086520 | 32.271 | 251 | 121 | 11 | 330 | 554 | 125 | 352 | 1.65e-20 | 95.1 |
| MS.gene98925.t1 | MTR_3g086520 | 32.271 | 251 | 121 | 11 | 330 | 554 | 122 | 349 | 1.75e-20 | 95.1 |
| MS.gene98925.t1 | MTR_3g086520 | 32.271 | 251 | 121 | 11 | 330 | 554 | 125 | 352 | 1.79e-20 | 95.1 |
| MS.gene98925.t1 | MTR_3g075530 | 29.078 | 282 | 147 | 12 | 324 | 574 | 88 | 347 | 8.74e-20 | 92.4 |
| MS.gene98925.t1 | MTR_8g089670 | 30.403 | 273 | 140 | 10 | 330 | 577 | 132 | 379 | 9.84e-20 | 92.8 |
| MS.gene98925.t1 | MTR_6g092020 | 28.364 | 275 | 143 | 9 | 330 | 572 | 74 | 326 | 2.76e-19 | 90.5 |
| MS.gene98925.t1 | MTR_2g063843 | 28.364 | 275 | 143 | 9 | 330 | 572 | 87 | 339 | 3.47e-19 | 90.5 |
| MS.gene98925.t1 | MTR_8g447220 | 26.686 | 341 | 185 | 13 | 278 | 576 | 26 | 343 | 4.98e-19 | 90.1 |
| MS.gene98925.t1 | MTR_2g063857 | 27.698 | 278 | 144 | 9 | 330 | 572 | 95 | 350 | 1.56e-18 | 88.6 |
| MS.gene98925.t1 | MTR_8g447220 | 28.070 | 285 | 161 | 10 | 278 | 541 | 26 | 287 | 1.63e-18 | 87.0 |
| MS.gene98925.t1 | MTR_2g063907 | 28.058 | 278 | 143 | 9 | 330 | 572 | 81 | 336 | 1.77e-18 | 88.6 |
| MS.gene98925.t1 | MTR_6g092100 | 28.261 | 276 | 143 | 9 | 330 | 572 | 29 | 282 | 2.17e-18 | 86.7 |
| MS.gene98925.t1 | MTR_2g063857 | 27.698 | 278 | 144 | 9 | 330 | 572 | 95 | 350 | 2.68e-18 | 87.4 |
| MS.gene98925.t1 | MTR_3g096520 | 30.483 | 269 | 138 | 12 | 315 | 554 | 87 | 335 | 1.78e-17 | 85.5 |
| MS.gene98925.t1 | MTR_3g096520 | 29.693 | 293 | 153 | 14 | 315 | 574 | 87 | 359 | 1.80e-17 | 85.5 |
| MS.gene98925.t1 | MTR_3g096520 | 29.740 | 269 | 140 | 11 | 315 | 554 | 104 | 352 | 1.97e-17 | 85.5 |
| MS.gene98925.t1 | MTR_6g021730 | 29.032 | 248 | 133 | 8 | 330 | 554 | 127 | 354 | 2.48e-17 | 85.5 |
| MS.gene98925.t1 | MTR_7g081170 | 27.742 | 155 | 95 | 4 | 359 | 504 | 85 | 231 | 1.29e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98925.t1 | AT1G08860 | 65.808 | 582 | 184 | 5 | 1 | 568 | 1 | 581 | 0.0 | 785 |
| MS.gene98925.t1 | AT5G61910 | 58.579 | 577 | 227 | 3 | 1 | 566 | 769 | 1344 | 0.0 | 693 |
| MS.gene98925.t1 | AT5G61900 | 58.579 | 577 | 227 | 3 | 1 | 566 | 1 | 576 | 0.0 | 691 |
| MS.gene98925.t1 | AT5G61900 | 58.579 | 577 | 227 | 3 | 1 | 566 | 1 | 576 | 0.0 | 691 |
| MS.gene98925.t1 | AT5G07300 | 55.979 | 577 | 239 | 4 | 1 | 563 | 1 | 576 | 0.0 | 663 |
| MS.gene98925.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 93 | 320 | 3.11e-21 | 97.1 |
| MS.gene98925.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 93 | 320 | 3.11e-21 | 97.1 |
| MS.gene98925.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 93 | 320 | 3.11e-21 | 97.1 |
| MS.gene98925.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 93 | 320 | 3.11e-21 | 97.1 |
| MS.gene98925.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 113 | 340 | 4.53e-21 | 96.7 |
| MS.gene98925.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 113 | 340 | 4.62e-21 | 96.3 |
| MS.gene98925.t1 | AT3G01650 | 31.600 | 250 | 124 | 9 | 330 | 554 | 156 | 383 | 2.29e-20 | 94.7 |
| MS.gene98925.t1 | AT3G01650 | 31.600 | 250 | 124 | 9 | 330 | 554 | 156 | 383 | 2.29e-20 | 94.7 |
| MS.gene98925.t1 | AT5G14420 | 29.455 | 275 | 141 | 11 | 330 | 574 | 122 | 373 | 6.96e-20 | 93.2 |
| MS.gene98925.t1 | AT5G14420 | 29.455 | 275 | 141 | 11 | 330 | 574 | 122 | 373 | 6.96e-20 | 93.2 |
| MS.gene98925.t1 | AT5G14420 | 29.455 | 275 | 141 | 11 | 330 | 574 | 122 | 373 | 6.96e-20 | 93.2 |
| MS.gene98925.t1 | AT5G14420 | 29.455 | 275 | 141 | 11 | 330 | 574 | 122 | 373 | 6.96e-20 | 93.2 |
| MS.gene98925.t1 | AT5G63970 | 28.669 | 293 | 155 | 11 | 315 | 574 | 16 | 287 | 7.63e-19 | 89.0 |
| MS.gene98925.t1 | AT5G63970 | 28.669 | 293 | 155 | 11 | 315 | 574 | 16 | 287 | 7.63e-19 | 89.0 |
| MS.gene98925.t1 | AT1G79380 | 28.625 | 269 | 143 | 10 | 315 | 554 | 58 | 306 | 5.29e-18 | 87.0 |
Find 115 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTAACCACAGCATTTA+TGG | 0.114808 | 6.2:+38266870 | None:intergenic |
| CTATATGGACCCACATTATT+TGG | 0.120245 | 6.2:-38267174 | MS.gene98925:CDS |
| TTCTGTTGTACAAGCTCTTT+TGG | 0.196545 | 6.2:-38266194 | MS.gene98925:CDS |
| AGACAAAGTGGTCTCCATTT+TGG | 0.203247 | 6.2:+38268964 | None:intergenic |
| GCTTAACCTTGACGGTTAAA+AGG | 0.247446 | 6.2:-38269300 | MS.gene98925:CDS |
| TTACGAAGTGTGAGTCTATA+TGG | 0.268277 | 6.2:-38267189 | MS.gene98925:CDS |
| TAATAAAATGTTTCCTGCTT+GGG | 0.269847 | 6.2:-38267567 | MS.gene98925:CDS |
| ATAACTTCAGTCTTTGAAAT+AGG | 0.278320 | 6.2:+38269003 | None:intergenic |
| CACGGCATCATTGTTCTTCT+CGG | 0.285193 | 6.2:+38270687 | None:intergenic |
| TTTGCAGCCATGTTCATTAC+AGG | 0.304763 | 6.2:+38267150 | None:intergenic |
| TTGAGGTGGATAAGGGTATT+GGG | 0.323260 | 6.2:+38266111 | None:intergenic |
| TTCTCACCTCGGAGTTGATT+GGG | 0.326578 | 6.2:+38267486 | None:intergenic |
| TGGATTCGAACTAAATTTCA+TGG | 0.331679 | 6.2:-38268239 | MS.gene98925:CDS |
| CCCTTATCGATTCTTATAGT+TGG | 0.331752 | 6.2:-38266838 | MS.gene98925:CDS |
| ATTGCATATGCCACAATCAT+AGG | 0.336592 | 6.2:+38270288 | None:intergenic |
| CTTACTATGCACTTCTTTCA+TGG | 0.340719 | 6.2:+38266518 | None:intergenic |
| TTTGAGGTGGATAAGGGTAT+TGG | 0.344180 | 6.2:+38266110 | None:intergenic |
| ACAACAATTTAAATCCAAAA+TGG | 0.352815 | 6.2:-38268978 | MS.gene98925:CDS |
| GATGGAAAATTGGAAGAATT+AGG | 0.355883 | 6.2:-38270258 | MS.gene98925:CDS |
| AGAGGCAAGTTGCACTTTAT+CGG | 0.361128 | 6.2:-38269478 | MS.gene98925:CDS |
| TTGACCAGCCACCTCTTGTT+TGG | 0.365121 | 6.2:+38270717 | None:intergenic |
| CATTCTGGGTTCAAAGAATT+CGG | 0.369769 | 6.2:+38270219 | None:intergenic |
| TTTCTCACCTCGGAGTTGAT+TGG | 0.371473 | 6.2:+38267485 | None:intergenic |
| TTGCATTACATCGATTTATC+TGG | 0.374898 | 6.2:-38268079 | MS.gene98925:CDS |
| AATGAAAGGAGATGGAAAAT+TGG | 0.379656 | 6.2:-38270268 | MS.gene98925:CDS |
| AACGGAAAACATGTACTTAT+CGG | 0.385169 | 6.2:-38268619 | MS.gene98925:CDS |
| CTATGTATTGCTTATCATTA+CGG | 0.385951 | 6.2:-38267085 | MS.gene98925:intron |
| CCCATAGGACGGCGTTGTTA+CGG | 0.386213 | 6.2:-38266905 | MS.gene98925:intron |
| AGCATGTAATTTACTTGATC+GGG | 0.388048 | 6.2:-38270423 | MS.gene98925:CDS |
| AAAATTTATGTAGGCTATCA+TGG | 0.398003 | 6.2:-38267621 | MS.gene98925:intron |
| TTCTCTTGTCCGTGTGTCAA+TGG | 0.399081 | 6.2:+38268413 | None:intergenic |
| TGTAGGAGTTGAAGGCATAA+TGG | 0.403444 | 6.2:-38267229 | MS.gene98925:CDS |
| CTAATAAAATGTTTCCTGCT+TGG | 0.407672 | 6.2:-38267568 | MS.gene98925:CDS |
| GGTTAAGCTTCGGCTTGGTT+TGG | 0.418360 | 6.2:+38269315 | None:intergenic |
| TCGATGTAATGCAAAGAATC+TGG | 0.423247 | 6.2:+38268088 | None:intergenic |
| TGTGGATCATTATTGTGAAA+AGG | 0.427709 | 6.2:-38268293 | MS.gene98925:CDS |
| CGAATTCTTTGAACCCAGAA+TGG | 0.434251 | 6.2:-38270218 | MS.gene98925:CDS |
| TCTGAAGGGTCAACTATTTG+TGG | 0.435296 | 6.2:-38268311 | MS.gene98925:CDS |
| ACCAACTATAAGAATCGATA+AGG | 0.436043 | 6.2:+38266837 | None:intergenic |
| TATCTTTCGTTGTTCTCGCT+TGG | 0.436588 | 6.2:-38269200 | MS.gene98925:CDS |
| CAGGTATTGGATGCTGATAA+TGG | 0.440119 | 6.2:-38266600 | MS.gene98925:CDS |
| ATTCTTGATATCCTTAGAAA+AGG | 0.440145 | 6.2:+38269048 | None:intergenic |
| CAGCATGTAATTTACTTGAT+CGG | 0.441863 | 6.2:-38270424 | MS.gene98925:CDS |
| TTACTATGCACTTCTTTCAT+GGG | 0.442233 | 6.2:+38266519 | None:intergenic |
| AATAAAATGTTTCCTGCTTG+GGG | 0.447902 | 6.2:-38267566 | MS.gene98925:CDS |
| ATTATATGTCCAGCTTCAAA+TGG | 0.448349 | 6.2:-38268124 | MS.gene98925:intron |
| TGTCTTAACATGCAGCAGTT+TGG | 0.454468 | 6.2:-38268946 | MS.gene98925:CDS |
| TCGATTCTTATAGTTGGTGT+TGG | 0.472872 | 6.2:-38266832 | MS.gene98925:CDS |
| TTCTGCGTTATAGGTTCTGA+AGG | 0.477097 | 6.2:-38268326 | MS.gene98925:intron |
| AACAGTCTCCTCAGCATGAA+TGG | 0.478571 | 6.2:+38269246 | None:intergenic |
| AAGCCGAAGCTTAACCTTGA+CGG | 0.478776 | 6.2:-38269308 | MS.gene98925:CDS |
| AAAAGAGGGAATAGAAATGA+TGG | 0.479000 | 6.2:-38269277 | MS.gene98925:CDS |
| TAACCGTCAAGGTTAAGCTT+CGG | 0.479312 | 6.2:+38269305 | None:intergenic |
| ATGGTTGCGGTAGATTTCAC+TGG | 0.480284 | 6.2:-38268220 | MS.gene98925:intron |
| CTGAGTGATCAAGACTTCCT+AGG | 0.482617 | 6.2:-38269501 | MS.gene98925:CDS |
| CGAACTAAATTTCATGGTTG+CGG | 0.485552 | 6.2:-38268233 | MS.gene98925:CDS |
| GTGTAGGTTGTAGGAGTTGA+AGG | 0.486099 | 6.2:-38267237 | MS.gene98925:intron |
| TCGGTTAAATTCATACCAAA+AGG | 0.492733 | 6.2:-38268056 | MS.gene98925:intron |
| ATATCAAGAATAGTTGAGAA+TGG | 0.495352 | 6.2:-38269036 | MS.gene98925:CDS |
| GACATTGACACAAGATATCA+TGG | 0.496552 | 6.2:-38269717 | MS.gene98925:CDS |
| TGATCGGGACATTGCGTCGA+AGG | 0.510329 | 6.2:-38270408 | MS.gene98925:intron |
| GTCAAGGTTAAGCTTCGGCT+TGG | 0.518785 | 6.2:+38269310 | None:intergenic |
| AAATGTTTACAAACCTTGGT+GGG | 0.518875 | 6.2:+38269690 | None:intergenic |
| ACGGAAAACATGTACTTATC+GGG | 0.523025 | 6.2:-38268618 | MS.gene98925:intron |
| CGCCTCATAAAAGAAATTCA+CGG | 0.528129 | 6.2:+38270669 | None:intergenic |
| CATTACAGGTCCAAATAATG+TGG | 0.528168 | 6.2:+38267164 | None:intergenic |
| TCTTGCTTTAGTGATTTGAA+TGG | 0.529244 | 6.2:-38270742 | MS.gene98925:CDS |
| TCAAAACACTCAATAAGTAA+TGG | 0.531349 | 6.2:+38268652 | None:intergenic |
| AAAATGTTTACAAACCTTGG+TGG | 0.535594 | 6.2:+38269689 | None:intergenic |
| AAGTGCAACTTGCCTCTCCT+AGG | 0.543366 | 6.2:+38269484 | None:intergenic |
| CCAACTATAAGAATCGATAA+GGG | 0.543759 | 6.2:+38266838 | None:intergenic |
| CGTCGCTTAAGAAGTTCTAC+TGG | 0.546983 | 6.2:-38266576 | MS.gene98925:CDS |
| AGTGCTGTTATATGATGAAA+CGG | 0.551687 | 6.2:+38267113 | None:intergenic |
| AAACGCTGATTTCAAGAGCA+TGG | 0.551958 | 6.2:-38266809 | MS.gene98925:CDS |
| TTTATTGACTACATATCTAG+TGG | 0.553134 | 6.2:-38268259 | MS.gene98925:CDS |
| TTGACGGTTAAAAGGAAAAG+AGG | 0.553289 | 6.2:-38269292 | MS.gene98925:CDS |
| TGCAAAGAATCTGGCTTGTG+AGG | 0.553928 | 6.2:+38268097 | None:intergenic |
| ATGTAGGCTATCATGGAGGT+TGG | 0.561867 | 6.2:-38267614 | MS.gene98925:intron |
| TACTATGCACTTCTTTCATG+GGG | 0.565387 | 6.2:+38266520 | None:intergenic |
| TCAGAGTGATCCTATGATTG+TGG | 0.565783 | 6.2:-38270298 | MS.gene98925:intron |
| GCGATTGTGCACGCAAGTTG+AGG | 0.567202 | 6.2:-38270635 | MS.gene98925:intron |
| AAAGAGGGAATAGAAATGAT+GGG | 0.570110 | 6.2:-38269276 | MS.gene98925:CDS |
| TGCTGCATGTTAAGACAAAG+TGG | 0.570565 | 6.2:+38268952 | None:intergenic |
| TAGGCTATCATGGAGGTTGG+AGG | 0.578214 | 6.2:-38267611 | MS.gene98925:CDS |
| GGAGCCAAACAAGAGGTGGC+TGG | 0.584629 | 6.2:-38270721 | MS.gene98925:CDS |
| GCATATGCAATGAAAGGAGA+TGG | 0.584810 | 6.2:-38270276 | MS.gene98925:CDS |
| ATTGACACACGGACAAGAGA+AGG | 0.588157 | 6.2:-38268411 | MS.gene98925:intron |
| TTTGTCATGCCATTGACACA+CGG | 0.590225 | 6.2:-38268422 | MS.gene98925:CDS |
| TAAGGGTATTGGGAAGCAAG+TGG | 0.591113 | 6.2:+38266121 | None:intergenic |
| TTTGGAGGAAAGTTACCTGC+GGG | 0.593775 | 6.2:-38267542 | MS.gene98925:CDS |
| ATTACATCGATTTATCTGGT+CGG | 0.601030 | 6.2:-38268075 | MS.gene98925:CDS |
| GGCAATTACCATTCATGCTG+AGG | 0.602088 | 6.2:-38269254 | MS.gene98925:CDS |
| ATAAAATGTTTCCTGCTTGG+GGG | 0.603588 | 6.2:-38267565 | MS.gene98925:CDS |
| TCTCGCTTGGATAACAAAGA+CGG | 0.608320 | 6.2:-38269187 | MS.gene98925:CDS |
| AAGCTCTATCAAGAGAGAAG+TGG | 0.613696 | 6.2:-38268452 | MS.gene98925:CDS |
| TCAAGAAACCATAAATGCTG+TGG | 0.616964 | 6.2:-38266878 | MS.gene98925:CDS |
| TCTGCGTTATAGGTTCTGAA+GGG | 0.617688 | 6.2:-38268325 | MS.gene98925:intron |
| GAAGCAATAGCTTACACAAG+TGG | 0.619505 | 6.2:+38270153 | None:intergenic |
| GAATGGAGCCAAACAAGAGG+TGG | 0.626205 | 6.2:-38270725 | MS.gene98925:CDS |
| GGCAAGTTGCACTTTATCGG+AGG | 0.628489 | 6.2:-38269475 | MS.gene98925:intron |
| CTGAGGAGACTGTTGCAGCA+AGG | 0.629529 | 6.2:-38269237 | MS.gene98925:CDS |
| TGACGGTTAAAAGGAAAAGA+GGG | 0.631939 | 6.2:-38269291 | MS.gene98925:CDS |
| ATTACAGGTCCAAATAATGT+GGG | 0.639830 | 6.2:+38267165 | None:intergenic |
| CAATGAGATACGTTACCCGC+AGG | 0.641741 | 6.2:+38267527 | None:intergenic |
| ATTGTGGCATATGCAATGAA+AGG | 0.656157 | 6.2:-38270282 | MS.gene98925:CDS |
| ATATCATGGTGTTCCCACCA+AGG | 0.656561 | 6.2:-38269703 | MS.gene98925:intron |
| TGATCAAGACTTCCTAGGAG+AGG | 0.663008 | 6.2:-38269496 | MS.gene98925:CDS |
| TTTGAATGGAGCCAAACAAG+AGG | 0.663232 | 6.2:-38270728 | MS.gene98925:CDS |
| ATTTGGACCTGTAATGAACA+TGG | 0.666765 | 6.2:-38267157 | MS.gene98925:CDS |
| AAGAGGGAATAGAAATGATG+GGG | 0.673284 | 6.2:-38269275 | MS.gene98925:CDS |
| TCAAGAATAGTTGAGAATGG+AGG | 0.680094 | 6.2:-38269033 | MS.gene98925:CDS |
| GTTTGGAGGAAAGTTACCTG+CGG | 0.698546 | 6.2:-38267543 | MS.gene98925:CDS |
| CGCTGATTTCAAGAGCATGG+AGG | 0.715202 | 6.2:-38266806 | MS.gene98925:intron |
| TGGGAGCCCAATCAACTCCG+AGG | 0.723297 | 6.2:-38267492 | MS.gene98925:intron |
| ATTTATGTAGGCTATCATGG+AGG | 0.738507 | 6.2:-38267618 | MS.gene98925:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATTCAAATAATTAAA+AGG | - | chr6.2:38267005-38267024 | MS.gene98925:intron | 10.0% |
| !! | AATTTCAAGATTATAAAATA+AGG | + | chr6.2:38266277-38266296 | None:intergenic | 10.0% |
| !! | TAGTTATAACTTATATATTT+AGG | + | chr6.2:38266800-38266819 | None:intergenic | 10.0% |
| !!! | CATTCATTTTTTTTTTTTTT+TGG | - | chr6.2:38270500-38270519 | MS.gene98925:intron | 10.0% |
| !!! | CTATATAAAAATAGTAATTT+TGG | + | chr6.2:38266889-38266908 | None:intergenic | 10.0% |
| !! | ATAAAAGTCAAAAATTGATT+AGG | + | chr6.2:38270684-38270703 | None:intergenic | 15.0% |
| !! | CATTAATTACTTAATAAATG+TGG | - | chr6.2:38269446-38269465 | MS.gene98925:intron | 15.0% |
| !! | TATTAAGTAATTAATGTATC+TGG | + | chr6.2:38269442-38269461 | None:intergenic | 15.0% |
| !!! | ATTGATTGGTTATTTTTAAT+TGG | + | chr6.2:38269903-38269922 | None:intergenic | 15.0% |
| !!! | TATTTTCTTATATATGAGAT+CGG | - | chr6.2:38269556-38269575 | MS.gene98925:intron | 15.0% |
| !!! | TCATTTTTTTTTTTTTTTGG+TGG | - | chr6.2:38270503-38270522 | MS.gene98925:intron | 15.0% |
| !!! | TTATTTTCTCAAATTTTTGT+CGG | + | chr6.2:38270125-38270144 | None:intergenic | 15.0% |
| !!! | TTTCTATTTTGAATAACATA+GGG | - | chr6.2:38269166-38269185 | MS.gene98925:intron | 15.0% |
| !!! | TTTTCTATTTTGAATAACAT+AGG | - | chr6.2:38269165-38269184 | MS.gene98925:intron | 15.0% |
| !! | AAAATCGATGTACAAAAATT+TGG | + | chr6.2:38268842-38268861 | None:intergenic | 20.0% |
| !! | ACAACAATTTAAATCCAAAA+TGG | - | chr6.2:38267866-38267885 | MS.gene98925:intron | 20.0% |
| !! | CAATCAATTATAATCATTGA+CGG | + | chr6.2:38269846-38269865 | None:intergenic | 20.0% |
| !! | GTATAATATTTCATTATAGC+TGG | - | chr6.2:38267395-38267414 | MS.gene98925:intron | 20.0% |
| !! | TAATAAAATTTCTGCGTTAT+AGG | - | chr6.2:38268509-38268528 | MS.gene98925:intron | 20.0% |
| !! | TATATATAGACCATATATGT+TGG | + | chr6.2:38267717-38267736 | None:intergenic | 20.0% |
| !! | TATTAAGTAATTAATGCATC+TGG | + | chr6.2:38269519-38269538 | None:intergenic | 20.0% |
| !!! | ATAAATTGTTCTATTGACTA+AGG | - | chr6.2:38268652-38268671 | MS.gene98925:CDS | 20.0% |
| !!! | ATGAATGAAATATTTTAGTG+TGG | + | chr6.2:38270487-38270506 | None:intergenic | 20.0% |
| !!! | GAAATGCTTTATGTTTTTTT+AGG | - | chr6.2:38269378-38269397 | MS.gene98925:intron | 20.0% |
| !!! | TAAATTTTAGTATGTGGATT+AGG | + | chr6.2:38269211-38269230 | None:intergenic | 20.0% |
| !!! | TAATTTTTTCTATCCATTCT+GGG | + | chr6.2:38266642-38266661 | None:intergenic | 20.0% |
| !!! | TAGATTTGTTTTAGTTAGTT+AGG | + | chr6.2:38269069-38269088 | None:intergenic | 20.0% |
| !!! | TCACTATGATAATTTTAGAA+AGG | - | chr6.2:38267232-38267251 | MS.gene98925:CDS | 20.0% |
| !!! | TTTTTTTTTTTTTTGGTGGT+CGG | - | chr6.2:38270507-38270526 | MS.gene98925:intron | 20.0% |
| ! | AAAATTTATGTAGGCTATCA+TGG | - | chr6.2:38269223-38269242 | MS.gene98925:CDS | 25.0% |
| ! | ACAAACTATAGCTCAAAAAT+AGG | - | chr6.2:38269023-38269042 | MS.gene98925:CDS | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | + | chr6.2:38270547-38270566 | None:intergenic | 25.0% |
| ! | AGGTTTATTATTACAGGTAT+TGG | - | chr6.2:38270231-38270250 | MS.gene98925:CDS | 25.0% |
| ! | ATAAGTTATAACTAACTCCA+AGG | - | chr6.2:38266806-38266825 | MS.gene98925:intron | 25.0% |
| ! | ATATCAAGAATAGTTGAGAA+TGG | - | chr6.2:38267808-38267827 | MS.gene98925:intron | 25.0% |
| ! | ATATGCATTCTCATATGTAT+AGG | + | chr6.2:38266469-38266488 | None:intergenic | 25.0% |
| ! | ATCAATGAACAAAATTTGCA+TGG | + | chr6.2:38268470-38268489 | None:intergenic | 25.0% |
| ! | ATCGGGTAATGTAATATTAA+TGG | - | chr6.2:38268243-38268262 | MS.gene98925:CDS | 25.0% |
| ! | ATTCTTGATATCCTTAGAAA+AGG | + | chr6.2:38267799-38267818 | None:intergenic | 25.0% |
| ! | CATAAAATGTTTACAAACCT+TGG | + | chr6.2:38267161-38267180 | None:intergenic | 25.0% |
| ! | CCACATACTAAAATTTATGT+AGG | - | chr6.2:38269214-38269233 | MS.gene98925:CDS | 25.0% |
| ! | CTATGTATTGCTTATCATTA+CGG | - | chr6.2:38269759-38269778 | MS.gene98925:intron | 25.0% |
| ! | CTTGTATTAGATTATTCACA+AGG | - | chr6.2:38268941-38268960 | MS.gene98925:CDS | 25.0% |
| ! | GTACTAAGGTTTATTATTAC+AGG | - | chr6.2:38270225-38270244 | MS.gene98925:CDS | 25.0% |
| ! | GTTGCATCATATTCATATAT+AGG | - | chr6.2:38268125-38268144 | MS.gene98925:intron | 25.0% |
| ! | TAAGTTATAACTAACTCCAA+GGG | - | chr6.2:38266807-38266826 | MS.gene98925:CDS | 25.0% |
| ! | TAATAAAATGTTTCCTGCTT+GGG | - | chr6.2:38269277-38269296 | MS.gene98925:CDS | 25.0% |
| ! | TACAACTTAAGATGTATTCA+TGG | - | chr6.2:38266232-38266251 | MS.gene98925:intron | 25.0% |
| ! | TCAAAACACTCAATAAGTAA+TGG | + | chr6.2:38268195-38268214 | None:intergenic | 25.0% |
| ! | TGTTTAGACTAAACTTCTTT+AGG | - | chr6.2:38268272-38268291 | MS.gene98925:CDS | 25.0% |
| !! | TTTATTGACTACATATCTAG+TGG | - | chr6.2:38268585-38268604 | MS.gene98925:intron | 25.0% |
| !!! | ACTATTTTCAAGCTTAAAGT+TGG | - | chr6.2:38270387-38270406 | MS.gene98925:intron | 25.0% |
| !!! | ATAACTTCAGTCTTTGAAAT+AGG | + | chr6.2:38267844-38267863 | None:intergenic | 25.0% |
| !!! | CAATTATATACATTTTGAGG+TGG | + | chr6.2:38270750-38270769 | None:intergenic | 25.0% |
| !!! | CCTACATAAATTTTAGTATG+TGG | + | chr6.2:38269217-38269236 | None:intergenic | 25.0% |
| !!! | CGATTTTTCAAGATTTTGTT+GGG | - | chr6.2:38268855-38268874 | MS.gene98925:intron | 25.0% |
| !!! | CTAATTTTTTCTATCCATTC+TGG | + | chr6.2:38266643-38266662 | None:intergenic | 25.0% |
| !!! | CTCATTGTTTTAATCTGAAT+GGG | - | chr6.2:38269333-38269352 | MS.gene98925:intron | 25.0% |
| !!! | GATTTTTCAAGATTTTGTTG+GGG | - | chr6.2:38268856-38268875 | MS.gene98925:intron | 25.0% |
| !!! | TCGATTTTTCAAGATTTTGT+TGG | - | chr6.2:38268854-38268873 | MS.gene98925:intron | 25.0% |
| !!! | TCTCATTGTTTTAATCTGAA+TGG | - | chr6.2:38269332-38269351 | MS.gene98925:intron | 25.0% |
| !!! | TGTTTTGATTTCAATAGCAA+CGG | - | chr6.2:38268207-38268226 | MS.gene98925:intron | 25.0% |
| !!! | TTATTTTTAATTGGTATGCG+CGG | + | chr6.2:38269894-38269913 | None:intergenic | 25.0% |
| !!! | TTTAGAAAGGTGTAATTTTG+TGG | - | chr6.2:38267245-38267264 | MS.gene98925:intron | 25.0% |
| !!! | TTTTATTTCTTTCACTATGC+AGG | - | chr6.2:38268164-38268183 | MS.gene98925:intron | 25.0% |
| !!! | TTTTTTTGATATTAACCCTC+CGG | - | chr6.2:38267988-38268007 | MS.gene98925:intron | 25.0% |
| !!! | TTTTTTTTTTTTTGGTGGTC+GGG | - | chr6.2:38270508-38270527 | MS.gene98925:intron | 25.0% |
| AAAAGAGGGAATAGAAATGA+TGG | - | chr6.2:38267567-38267586 | MS.gene98925:CDS | 30.0% | |
| AAAATGTTTACAAACCTTGG+TGG | + | chr6.2:38267158-38267177 | None:intergenic | 30.0% | |
| AAAGAGGGAATAGAAATGAT+GGG | - | chr6.2:38267568-38267587 | MS.gene98925:CDS | 30.0% | |
| AAATGTTTACAAACCTTGGT+GGG | + | chr6.2:38267157-38267176 | None:intergenic | 30.0% | |
| AACGGAAAACATGTACTTAT+CGG | - | chr6.2:38268225-38268244 | MS.gene98925:CDS | 30.0% | |
| AACTCATTGCAATATGTTCA+AGG | + | chr6.2:38266760-38266779 | None:intergenic | 30.0% | |
| AATAAAATGTTTCCTGCTTG+GGG | - | chr6.2:38269278-38269297 | MS.gene98925:CDS | 30.0% | |
| AATGAAAGGAGATGGAAAAT+TGG | - | chr6.2:38266576-38266595 | MS.gene98925:CDS | 30.0% | |
| ACCAACTATAAGAATCGATA+AGG | + | chr6.2:38270010-38270029 | None:intergenic | 30.0% | |
| ACCTGAAAGAAAACAAAATG+AGG | + | chr6.2:38267096-38267115 | None:intergenic | 30.0% | |
| AGAACAAAAGGCGAAAAAAT+AGG | + | chr6.2:38266345-38266364 | None:intergenic | 30.0% | |
| AGCATGTAATTTACTTGATC+GGG | - | chr6.2:38266421-38266440 | MS.gene98925:intron | 30.0% | |
| ATCCAATTCGTTAGAACAAA+AGG | + | chr6.2:38266357-38266376 | None:intergenic | 30.0% | |
| ATGCAACATTATATTCGTTC+GGG | + | chr6.2:38268112-38268131 | None:intergenic | 30.0% | |
| ATTACAGGTCCAAATAATGT+GGG | + | chr6.2:38269682-38269701 | None:intergenic | 30.0% | |
| ATTATATGTCCAGCTTCAAA+TGG | - | chr6.2:38268720-38268739 | MS.gene98925:intron | 30.0% | |
| CAGCATGTAATTTACTTGAT+CGG | - | chr6.2:38266420-38266439 | MS.gene98925:intron | 30.0% | |
| CCAACTATAAGAATCGATAA+GGG | + | chr6.2:38270009-38270028 | None:intergenic | 30.0% | |
| CCTGAAAGAAAACAAAATGA+GGG | + | chr6.2:38267095-38267114 | None:intergenic | 30.0% | |
| CTAATAAAATGTTTCCTGCT+TGG | - | chr6.2:38269276-38269295 | MS.gene98925:CDS | 30.0% | |
| GAAGATCATGAACAATTGAT+TGG | + | chr6.2:38269917-38269936 | None:intergenic | 30.0% | |
| GAGAAATGTTCTTAGTACTA+AGG | - | chr6.2:38270211-38270230 | MS.gene98925:CDS | 30.0% | |
| GATGCAACATTATATTCGTT+CGG | + | chr6.2:38268113-38268132 | None:intergenic | 30.0% | |
| GATGGAAAATTGGAAGAATT+AGG | - | chr6.2:38266586-38266605 | MS.gene98925:CDS | 30.0% | |
| GATTATAGACTTTGTGACAT+TGG | - | chr6.2:38267465-38267484 | MS.gene98925:intron | 30.0% | |
| TCGGTTAAATTCATACCAAA+AGG | - | chr6.2:38268788-38268807 | MS.gene98925:intron | 30.0% | |
| TCTTGCTTTAGTGATTTGAA+TGG | - | chr6.2:38266102-38266121 | MS.gene98925:CDS | 30.0% | |
| TGGATTCGAACTAAATTTCA+TGG | - | chr6.2:38268605-38268624 | MS.gene98925:intron | 30.0% | |
| TGTGGATCATTATTGTGAAA+AGG | - | chr6.2:38268551-38268570 | MS.gene98925:intron | 30.0% | |
| TGTTACGTAATGACTTGAAA+CGG | - | chr6.2:38266488-38266507 | MS.gene98925:intron | 30.0% | |
| TTACTATGCACTTCTTTCAT+GGG | + | chr6.2:38270328-38270347 | None:intergenic | 30.0% | |
| ! | ACAATTTTATTAATTCGCCC+AGG | - | chr6.2:38267029-38267048 | MS.gene98925:intron | 30.0% |
| ! | AGTGCTGTTATATGATGAAA+CGG | + | chr6.2:38269734-38269753 | None:intergenic | 30.0% |
| ! | CAATTTTATTAATTCGCCCA+GGG | - | chr6.2:38267030-38267049 | MS.gene98925:intron | 30.0% |
| !! | ATTACATCGATTTATCTGGT+CGG | - | chr6.2:38268769-38268788 | MS.gene98925:intron | 30.0% |
| !! | TCTCATGTTTTTGTGTACTA+TGG | - | chr6.2:38267492-38267511 | MS.gene98925:intron | 30.0% |
| !! | TTGCATTACATCGATTTATC+TGG | - | chr6.2:38268765-38268784 | MS.gene98925:intron | 30.0% |
| !!! | ATACATTTTGAGGTGGATAA+GGG | + | chr6.2:38270743-38270762 | None:intergenic | 30.0% |
| !!! | ATTTTGGTGCCCTATAAAAA+TGG | + | chr6.2:38266873-38266892 | None:intergenic | 30.0% |
| !!! | GATAGTTTTTTCTTGTGTGT+AGG | - | chr6.2:38269591-38269610 | MS.gene98925:intron | 30.0% |
| !!! | GTCATCTTGTTTTTTCTTGT+AGG | - | chr6.2:38267771-38267790 | MS.gene98925:intron | 30.0% |
| !!! | TATACATTTTGAGGTGGATA+AGG | + | chr6.2:38270744-38270763 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTGGTGGTCG+GGG | - | chr6.2:38270509-38270528 | MS.gene98925:intron | 30.0% |
| AAACATGTTGTGCACAAAGA+TGG | + | chr6.2:38267940-38267959 | None:intergenic | 35.0% | |
| AAGAGGGAATAGAAATGATG+GGG | - | chr6.2:38267569-38267588 | MS.gene98925:CDS | 35.0% | |
| AATGAACATGGCTGCAAAAA+TGG | - | chr6.2:38269699-38269718 | MS.gene98925:intron | 35.0% | |
| ACGGAAAACATGTACTTATC+GGG | - | chr6.2:38268226-38268245 | MS.gene98925:CDS | 35.0% | |
| ATAAAATGTTTCCTGCTTGG+GGG | - | chr6.2:38269279-38269298 | MS.gene98925:CDS | 35.0% | |
| ATACCTAGCTCCAACATATA+TGG | - | chr6.2:38267704-38267723 | MS.gene98925:intron | 35.0% | |
| ATTGCATATGCCACAATCAT+AGG | + | chr6.2:38266559-38266578 | None:intergenic | 35.0% | |
| ATTGTGGCATATGCAATGAA+AGG | - | chr6.2:38266562-38266581 | MS.gene98925:CDS | 35.0% | |
| ATTTATGTAGGCTATCATGG+AGG | - | chr6.2:38269226-38269245 | MS.gene98925:CDS | 35.0% | |
| ATTTGGACCTGTAATGAACA+TGG | - | chr6.2:38269687-38269706 | MS.gene98925:intron | 35.0% | |
| CAGAAAAAGAAACTTAGGCA+AGG | + | chr6.2:38270075-38270094 | None:intergenic | 35.0% | |
| CATTACAGGTCCAAATAATG+TGG | + | chr6.2:38269683-38269702 | None:intergenic | 35.0% | |
| CATTCTGGGTTCAAAGAATT+CGG | + | chr6.2:38266628-38266647 | None:intergenic | 35.0% | |
| CGAACTAAATTTCATGGTTG+CGG | - | chr6.2:38268611-38268630 | MS.gene98925:intron | 35.0% | |
| CGCCTCATAAAAGAAATTCA+CGG | + | chr6.2:38266178-38266197 | None:intergenic | 35.0% | |
| CTAAGAACATTTCTCGAATC+AGG | + | chr6.2:38270206-38270225 | None:intergenic | 35.0% | |
| CTATATGGACCCACATTATT+TGG | - | chr6.2:38269670-38269689 | MS.gene98925:intron | 35.0% | |
| CTTACTATGCACTTCTTTCA+TGG | + | chr6.2:38270329-38270348 | None:intergenic | 35.0% | |
| GACATTGACACAAGATATCA+TGG | - | chr6.2:38267127-38267146 | MS.gene98925:CDS | 35.0% | |
| GATGCACAATTGTAACATCA+AGG | - | chr6.2:38268323-38268342 | MS.gene98925:intron | 35.0% | |
| GGAAAAAGGTAAGTAAAGAC+TGG | - | chr6.2:38268048-38268067 | MS.gene98925:intron | 35.0% | |
| GTAAGCTTGATACTTGTCAA+TGG | - | chr6.2:38268810-38268829 | MS.gene98925:intron | 35.0% | |
| TACTATGCACTTCTTTCATG+GGG | + | chr6.2:38270327-38270346 | None:intergenic | 35.0% | |
| TCAAGAAACCATAAATGCTG+TGG | - | chr6.2:38269966-38269985 | MS.gene98925:intron | 35.0% | |
| TCAAGAATAGTTGAGAATGG+AGG | - | chr6.2:38267811-38267830 | MS.gene98925:intron | 35.0% | |
| TCGATGTAATGCAAAGAATC+TGG | + | chr6.2:38268759-38268778 | None:intergenic | 35.0% | |
| TGACGGTTAAAAGGAAAAGA+GGG | - | chr6.2:38267553-38267572 | MS.gene98925:CDS | 35.0% | |
| TGATTCAAACAGTACTTGCA+GGG | + | chr6.2:38267205-38267224 | None:intergenic | 35.0% | |
| TGCTTTAACCACAGCATTTA+TGG | + | chr6.2:38269977-38269996 | None:intergenic | 35.0% | |
| TGGTCTGCTAAATTCTTGAA+AGG | - | chr6.2:38267265-38267284 | MS.gene98925:intron | 35.0% | |
| TTACGAAGTGTGAGTCTATA+TGG | - | chr6.2:38269655-38269674 | MS.gene98925:intron | 35.0% | |
| TTGACGGTTAAAAGGAAAAG+AGG | - | chr6.2:38267552-38267571 | MS.gene98925:CDS | 35.0% | |
| TTGATTCAAACAGTACTTGC+AGG | + | chr6.2:38267206-38267225 | None:intergenic | 35.0% | |
| ! | AATTTCTTTTATGAGGCGCA+TGG | - | chr6.2:38266180-38266199 | MS.gene98925:CDS | 35.0% |
| ! | ACATAAAGCATTTCTCACCT+CGG | + | chr6.2:38269372-38269391 | None:intergenic | 35.0% |
| ! | ATCAAGGTTTTCTTGTCAAC+AGG | - | chr6.2:38268339-38268358 | MS.gene98925:intron | 35.0% |
| ! | ATTTCTTTTATGAGGCGCAT+GGG | - | chr6.2:38266181-38266200 | MS.gene98925:CDS | 35.0% |
| ! | CAAGTATCAAGCTTACCTTT+TGG | + | chr6.2:38268806-38268825 | None:intergenic | 35.0% |
| ! | TCGATTCTTATAGTTGGTGT+TGG | - | chr6.2:38270012-38270031 | MS.gene98925:intron | 35.0% |
| ! | TCTCTTGATAGAGCTTTTCA+AGG | + | chr6.2:38268388-38268407 | None:intergenic | 35.0% |
| ! | TCTTGTAGGATCCTTTTCTA+AGG | - | chr6.2:38267785-38267804 | MS.gene98925:intron | 35.0% |
| ! | TCTTTTCCTTTTAACCGTCA+AGG | + | chr6.2:38267553-38267572 | None:intergenic | 35.0% |
| ! | TGCCGTGAATTTCTTTTATG+AGG | - | chr6.2:38266173-38266192 | MS.gene98925:CDS | 35.0% |
| ! | TTCTGTTGTACAAGCTCTTT+TGG | - | chr6.2:38270650-38270669 | MS.gene98925:CDS | 35.0% |
| ! | TTTTCTTGTGTGTAGGTTGT+AGG | - | chr6.2:38269598-38269617 | MS.gene98925:intron | 35.0% |
| !! | CCCTTATCGATTCTTATAGT+TGG | - | chr6.2:38270006-38270025 | MS.gene98925:intron | 35.0% |
| !! | TTCATGGTATCTTTAGAGCT+TGG | - | chr6.2:38266248-38266267 | MS.gene98925:intron | 35.0% |
| !!! | CCCTCATTTTGTTTTCTTTC+AGG | - | chr6.2:38267092-38267111 | MS.gene98925:CDS | 35.0% |
| AAGCTCTATCAAGAGAGAAG+TGG | - | chr6.2:38268392-38268411 | MS.gene98925:intron | 40.0% | |
| AGACCATATATGTTGGAGCT+AGG | + | chr6.2:38267710-38267729 | None:intergenic | 40.0% | |
| AGAGGCAAGTTGCACTTTAT+CGG | - | chr6.2:38267366-38267385 | MS.gene98925:intron | 40.0% | |
| ATGATCTTCTTCCCATAGGA+CGG | - | chr6.2:38269928-38269947 | MS.gene98925:intron | 40.0% | |
| CCACCTGTCAAAACACAATA+GGG | + | chr6.2:38270624-38270643 | None:intergenic | 40.0% | |
| CGAATTCTTTGAACCCAGAA+TGG | - | chr6.2:38266626-38266645 | MS.gene98925:intron | 40.0% | |
| GAAGCAATAGCTTACACAAG+TGG | + | chr6.2:38266694-38266713 | None:intergenic | 40.0% | |
| GCATATGCAATGAAAGGAGA+TGG | - | chr6.2:38266568-38266587 | MS.gene98925:CDS | 40.0% | |
| GCTTAACCTTGACGGTTAAA+AGG | - | chr6.2:38267544-38267563 | MS.gene98925:CDS | 40.0% | |
| GTTATAACTAACTCCAAGGG+TGG | - | chr6.2:38266810-38266829 | MS.gene98925:CDS | 40.0% | |
| GTTCATGATCTTCTTCCCAT+AGG | - | chr6.2:38269924-38269943 | MS.gene98925:intron | 40.0% | |
| TAACCGTCAAGGTTAAGCTT+CGG | + | chr6.2:38267542-38267561 | None:intergenic | 40.0% | |
| TAATCCGGAGTTCAGGAAAA+AGG | - | chr6.2:38268034-38268053 | MS.gene98925:intron | 40.0% | |
| TATCTTTCGTTGTTCTCGCT+TGG | - | chr6.2:38267644-38267663 | MS.gene98925:intron | 40.0% | |
| TCAGAGTGATCCTATGATTG+TGG | - | chr6.2:38266546-38266565 | MS.gene98925:CDS | 40.0% | |
| TCCACCTGTCAAAACACAAT+AGG | + | chr6.2:38270625-38270644 | None:intergenic | 40.0% | |
| TCTCGCTTGGATAACAAAGA+CGG | - | chr6.2:38267657-38267676 | MS.gene98925:intron | 40.0% | |
| TCTGAAGGGTCAACTATTTG+TGG | - | chr6.2:38268533-38268552 | MS.gene98925:intron | 40.0% | |
| TGAGCAAGTAACTGCACTAT+AGG | + | chr6.2:38268982-38269001 | None:intergenic | 40.0% | |
| TGCTGCATGTTAAGACAAAG+TGG | + | chr6.2:38267895-38267914 | None:intergenic | 40.0% | |
| TGTCTTAACATGCAGCAGTT+TGG | - | chr6.2:38267898-38267917 | MS.gene98925:intron | 40.0% | |
| TTCCTAGTGGGAACAATTCT+TGG | + | chr6.2:38268074-38268093 | None:intergenic | 40.0% | |
| TTTGAATGGAGCCAAACAAG+AGG | - | chr6.2:38266116-38266135 | MS.gene98925:CDS | 40.0% | |
| TTTGCAGCCATGTTCATTAC+AGG | + | chr6.2:38269697-38269716 | None:intergenic | 40.0% | |
| TTTGTCATGCCATTGACACA+CGG | - | chr6.2:38268422-38268441 | MS.gene98925:CDS | 40.0% | |
| ! | AGACAAAGTGGTCTCCATTT+TGG | + | chr6.2:38267883-38267902 | None:intergenic | 40.0% |
| ! | CGCCTTTTGTTCTAACGAAT+TGG | - | chr6.2:38266352-38266371 | MS.gene98925:intron | 40.0% |
| ! | CTTACCTTTTTCCTGAACTC+CGG | + | chr6.2:38268041-38268060 | None:intergenic | 40.0% |
| ! | TGAGCTTAACTCAGTTGGTA+GGG | + | chr6.2:38270570-38270589 | None:intergenic | 40.0% |
| ! | TGTAGGAGTTGAAGGCATAA+TGG | - | chr6.2:38269615-38269634 | MS.gene98925:intron | 40.0% |
| ! | TGTTGTACAAGCTCTTTTGG+AGG | - | chr6.2:38270653-38270672 | MS.gene98925:CDS | 40.0% |
| ! | TTCTGCGTTATAGGTTCTGA+AGG | - | chr6.2:38268518-38268537 | MS.gene98925:intron | 40.0% |
| ! | TTTGAGGTGGATAAGGGTAT+TGG | + | chr6.2:38270737-38270756 | None:intergenic | 40.0% |
| !! | AAACGCTGATTTCAAGAGCA+TGG | - | chr6.2:38270035-38270054 | MS.gene98925:intron | 40.0% |
| !! | CAGGTATTGGATGCTGATAA+TGG | - | chr6.2:38270244-38270263 | MS.gene98925:CDS | 40.0% |
| !! | TCTGCGTTATAGGTTCTGAA+GGG | - | chr6.2:38268519-38268538 | MS.gene98925:intron | 40.0% |
| !! | TTGAGGTGGATAAGGGTATT+GGG | + | chr6.2:38270736-38270755 | None:intergenic | 40.0% |
| !!! | CCTAAGATTTTTAGTGCCCT+GGG | + | chr6.2:38267049-38267068 | None:intergenic | 40.0% |
| !!! | GAACCCTATTGTGTTTTGAC+AGG | - | chr6.2:38270618-38270637 | MS.gene98925:intron | 40.0% |
| !!! | TCCTAAGATTTTTAGTGCCC+TGG | + | chr6.2:38267050-38267069 | None:intergenic | 40.0% |
| AACAGTCTCCTCAGCATGAA+TGG | + | chr6.2:38267601-38267620 | None:intergenic | 45.0% | |
| AACCTGAGTTCGATTCCTAG+TGG | + | chr6.2:38268087-38268106 | None:intergenic | 45.0% | |
| AAGCCGAAGCTTAACCTTGA+CGG | - | chr6.2:38267536-38267555 | MS.gene98925:CDS | 45.0% | |
| ACCTGAGTTCGATTCCTAGT+GGG | + | chr6.2:38268086-38268105 | None:intergenic | 45.0% | |
| ATATCATGGTGTTCCCACCA+AGG | - | chr6.2:38267141-38267160 | MS.gene98925:CDS | 45.0% | |
| ATATTAACCCTCCGGTTTCG+AGG | - | chr6.2:38267996-38268015 | MS.gene98925:intron | 45.0% | |
| ATGGTTGCGGTAGATTTCAC+TGG | - | chr6.2:38268624-38268643 | MS.gene98925:CDS | 45.0% | |
| ATGTAGGCTATCATGGAGGT+TGG | - | chr6.2:38269230-38269249 | MS.gene98925:CDS | 45.0% | |
| ATTGACACACGGACAAGAGA+AGG | - | chr6.2:38268433-38268452 | MS.gene98925:CDS | 45.0% | |
| CACGGCATCATTGTTCTTCT+CGG | + | chr6.2:38266160-38266179 | None:intergenic | 45.0% | |
| CCCTATAAAAATGGTGCCCT+GGG | + | chr6.2:38266864-38266883 | None:intergenic | 45.0% | |
| CGTCGCTTAAGAAGTTCTAC+TGG | - | chr6.2:38270268-38270287 | MS.gene98925:CDS | 45.0% | |
| CTGAGTGATCAAGACTTCCT+AGG | - | chr6.2:38267343-38267362 | MS.gene98925:intron | 45.0% | |
| GGCAATTACCATTCATGCTG+AGG | - | chr6.2:38267590-38267609 | MS.gene98925:CDS | 45.0% | |
| GTACTTGCAGGGATAACTCA+TGG | + | chr6.2:38267194-38267213 | None:intergenic | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+AGG | + | chr6.2:38270571-38270590 | None:intergenic | 45.0% | |
| GTGTAGGTTGTAGGAGTTGA+AGG | - | chr6.2:38269607-38269626 | MS.gene98925:intron | 45.0% | |
| GTTTGGAGGAAAGTTACCTG+CGG | - | chr6.2:38269301-38269320 | MS.gene98925:CDS | 45.0% | |
| TAAACATGCCAGTGTCGTGT+CGG | - | chr6.2:38270161-38270180 | MS.gene98925:intron | 45.0% | |
| TATTAACCCTCCGGTTTCGA+GGG | - | chr6.2:38267997-38268016 | MS.gene98925:intron | 45.0% | |
| TCCTGAACTCCGGATTACTT+GGG | + | chr6.2:38268031-38268050 | None:intergenic | 45.0% | |
| TGATCAAGACTTCCTAGGAG+AGG | - | chr6.2:38267348-38267367 | MS.gene98925:intron | 45.0% | |
| TTCCTGAACTCCGGATTACT+TGG | + | chr6.2:38268032-38268051 | None:intergenic | 45.0% | |
| TTCTCTTGTCCGTGTGTCAA+TGG | + | chr6.2:38268434-38268453 | None:intergenic | 45.0% | |
| TTTGGAGGAAAGTTACCTGC+GGG | - | chr6.2:38269302-38269321 | MS.gene98925:CDS | 45.0% | |
| ! | CCCAGGGCACTAAAAATCTT+AGG | - | chr6.2:38267046-38267065 | MS.gene98925:intron | 45.0% |
| ! | TGAGGATCTCCATTTGAAGC+TGG | + | chr6.2:38268732-38268751 | None:intergenic | 45.0% |
| ! | TGCAAAGAATCTGGCTTGTG+AGG | + | chr6.2:38268750-38268769 | None:intergenic | 45.0% |
| ! | TTCTCACCTCGGAGTTGATT+GGG | + | chr6.2:38269361-38269380 | None:intergenic | 45.0% |
| ! | TTTCTCACCTCGGAGTTGAT+TGG | + | chr6.2:38269362-38269381 | None:intergenic | 45.0% |
| !! | CCCAGGGCACCATTTTTATA+GGG | - | chr6.2:38266861-38266880 | MS.gene98925:CDS | 45.0% |
| !! | TAAGGGTATTGGGAAGCAAG+TGG | + | chr6.2:38270726-38270745 | None:intergenic | 45.0% |
| !!! | CCCTATTGTGTTTTGACAGG+TGG | - | chr6.2:38270621-38270640 | MS.gene98925:intron | 45.0% |
| !! | AAAAATATTAATAAAAAAGT+TGG | + | chr6.2:38266517-38266536 | None:intergenic | 5.0% |
| !! | AAAATAATAATAATAATATG+AGG | + | chr6.2:38267970-38267989 | None:intergenic | 5.0% |
| AACTCCAAGGGTGGCCTTTA+GGG | - | chr6.2:38266819-38266838 | MS.gene98925:CDS | 50.0% | |
| AAGTGCAACTTGCCTCTCCT+AGG | + | chr6.2:38267363-38267382 | None:intergenic | 50.0% | |
| ATGTTTCCTGCTTGGGGGTT+TGG | - | chr6.2:38269284-38269303 | MS.gene98925:CDS | 50.0% | |
| ATTAACCCTCCGGTTTCGAG+GGG | - | chr6.2:38267998-38268017 | MS.gene98925:intron | 50.0% | |
| CAATGAGATACGTTACCCGC+AGG | + | chr6.2:38269320-38269339 | None:intergenic | 50.0% | |
| CCAACTGAGTTAAGCTCACG+AGG | - | chr6.2:38270572-38270591 | MS.gene98925:intron | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | + | chr6.2:38270575-38270594 | None:intergenic | 50.0% | |
| GAATGGAGCCAAACAAGAGG+TGG | - | chr6.2:38266119-38266138 | MS.gene98925:CDS | 50.0% | |
| GAGGGAGAGTGAGTTAGTCA+GGG | + | chr6.2:38267077-38267096 | None:intergenic | 50.0% | |
| GCCCTATAAAAATGGTGCCC+TGG | + | chr6.2:38266865-38266884 | None:intergenic | 50.0% | |
| GGAAAACGGCCCAAGTAATC+CGG | - | chr6.2:38268019-38268038 | MS.gene98925:intron | 50.0% | |
| GGCAAGTTGCACTTTATCGG+AGG | - | chr6.2:38267369-38267388 | MS.gene98925:intron | 50.0% | |
| GGCCAAGAATTGTTCCCACT+AGG | - | chr6.2:38268069-38268088 | MS.gene98925:CDS | 50.0% | |
| GTCAAGGTTAAGCTTCGGCT+TGG | + | chr6.2:38267537-38267556 | None:intergenic | 50.0% | |
| TAACTCCAAGGGTGGCCTTT+AGG | - | chr6.2:38266818-38266837 | MS.gene98925:CDS | 50.0% | |
| TAGGCTATCATGGAGGTTGG+AGG | - | chr6.2:38269233-38269252 | MS.gene98925:CDS | 50.0% | |
| TCCCACTAGGAATCGAACTC+AGG | - | chr6.2:38268082-38268101 | MS.gene98925:CDS | 50.0% | |
| TGAGGGAGAGTGAGTTAGTC+AGG | + | chr6.2:38267078-38267097 | None:intergenic | 50.0% | |
| TTGACCAGCCACCTCTTGTT+TGG | + | chr6.2:38266130-38266149 | None:intergenic | 50.0% | |
| ! | TCGTGTCGGTGTCTGACAAT+AGG | - | chr6.2:38270175-38270194 | MS.gene98925:CDS | 50.0% |
| !! | CGCTGATTTCAAGAGCATGG+AGG | - | chr6.2:38270038-38270057 | MS.gene98925:intron | 50.0% |
| !! | GCCCAGGGCACCATTTTTAT+AGG | - | chr6.2:38266860-38266879 | MS.gene98925:CDS | 50.0% |
| !! | GGTTAAGCTTCGGCTTGGTT+TGG | + | chr6.2:38267532-38267551 | None:intergenic | 50.0% |
| CCCATAGGACGGCGTTGTTA+CGG | - | chr6.2:38269939-38269958 | MS.gene98925:intron | 55.0% | |
| CCGTAACAACGCCGTCCTAT+GGG | + | chr6.2:38269942-38269961 | None:intergenic | 55.0% | |
| CTCCGGTTTCGAGGGGAAAA+CGG | - | chr6.2:38268005-38268024 | MS.gene98925:intron | 55.0% | |
| CTGAGGAGACTGTTGCAGCA+AGG | - | chr6.2:38267607-38267626 | MS.gene98925:CDS | 55.0% | |
| GCCCAAGTAATCCGGAGTTC+AGG | - | chr6.2:38268027-38268046 | MS.gene98925:intron | 55.0% | |
| GCGATTGTGCACGCAAGTTG+AGG | - | chr6.2:38266209-38266228 | MS.gene98925:intron | 55.0% | |
| TCCGTAACAACGCCGTCCTA+TGG | + | chr6.2:38269943-38269962 | None:intergenic | 55.0% | |
| TGATCGGGACATTGCGTCGA+AGG | - | chr6.2:38266436-38266455 | MS.gene98925:intron | 55.0% | |
| TTTCCTCCAAACCCCCAAGC+AGG | + | chr6.2:38269293-38269312 | None:intergenic | 55.0% | |
| TTTCCTGCTTGGGGGTTTGG+AGG | - | chr6.2:38269287-38269306 | MS.gene98925:CDS | 55.0% | |
| ! | GTTTTCCCCTCGAAACCGGA+GGG | + | chr6.2:38268006-38268025 | None:intergenic | 55.0% |
| GGAGCCAAACAAGAGGTGGC+TGG | - | chr6.2:38266123-38266142 | MS.gene98925:CDS | 60.0% | |
| GTCAGACACCGACACGACAC+TGG | + | chr6.2:38270172-38270191 | None:intergenic | 60.0% | |
| TGGGAGCCCAATCAACTCCG+AGG | - | chr6.2:38269352-38269371 | MS.gene98925:intron | 60.0% | |
| ! | CGTTTTCCCCTCGAAACCGG+AGG | + | chr6.2:38268007-38268026 | None:intergenic | 60.0% |
| ! | TCCAAGGGTGGCCTTTAGGG+TGG | - | chr6.2:38266822-38266841 | MS.gene98925:CDS | 60.0% |
| !! | CCAAGGGTGGCCTTTAGGGT+GGG | - | chr6.2:38266823-38266842 | MS.gene98925:CDS | 60.0% |
| !! | GGCCGTTTTCCCCTCGAAAC+CGG | + | chr6.2:38268010-38268029 | None:intergenic | 60.0% |
| CCCACCCTAAAGGCCACCCT+TGG | + | chr6.2:38266826-38266845 | None:intergenic | 65.0% | |
| ! | TTTAGGGTGGGTGGGAGGGG+CGG | - | chr6.2:38266835-38266854 | MS.gene98925:CDS | 65.0% |
| !! | AGGGTGGCCTTTAGGGTGGG+TGG | - | chr6.2:38266826-38266845 | MS.gene98925:CDS | 65.0% |
| !! | GCCTTTAGGGTGGGTGGGAG+GGG | - | chr6.2:38266832-38266851 | MS.gene98925:CDS | 65.0% |
| !! | GGCCTTTAGGGTGGGTGGGA+GGG | - | chr6.2:38266831-38266850 | MS.gene98925:CDS | 65.0% |
| !! | GGGTGGCCTTTAGGGTGGGT+GGG | - | chr6.2:38266827-38266846 | MS.gene98925:CDS | 65.0% |
| !! | TGGCCTTTAGGGTGGGTGGG+AGG | - | chr6.2:38266830-38266849 | MS.gene98925:CDS | 65.0% |
| GCCCCTCCCACCCACCCTAA+AGG | + | chr6.2:38266836-38266855 | None:intergenic | 70.0% | |
| ! | GTGGGAGGGGCGGCAGCCCA+GGG | - | chr6.2:38266845-38266864 | MS.gene98925:CDS | 80.0% |
| ! | GGTGGGAGGGGCGGCAGCCC+AGG | - | chr6.2:38266844-38266863 | MS.gene98925:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 38266096 | 38270770 | 38266096 | ID=MS.gene98925 |
| chr6.2 | mRNA | 38266096 | 38270770 | 38266096 | ID=MS.gene98925.t1;Parent=MS.gene98925 |
| chr6.2 | exon | 38270636 | 38270770 | 38270636 | ID=MS.gene98925.t1.exon1;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38270636 | 38270770 | 38270636 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38270409 | 38270456 | 38270409 | ID=MS.gene98925.t1.exon2;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38270409 | 38270456 | 38270409 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38270168 | 38270316 | 38270168 | ID=MS.gene98925.t1.exon3;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38270168 | 38270316 | 38270168 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38269704 | 38269752 | 38269704 | ID=MS.gene98925.t1.exon4;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38269704 | 38269752 | 38269704 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38269476 | 38269532 | 38269476 | ID=MS.gene98925.t1.exon5;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38269476 | 38269532 | 38269476 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38269174 | 38269344 | 38269174 | ID=MS.gene98925.t1.exon6;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38269174 | 38269344 | 38269174 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38268939 | 38269073 | 38268939 | ID=MS.gene98925.t1.exon7;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38268939 | 38269073 | 38268939 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38268619 | 38268680 | 38268619 | ID=MS.gene98925.t1.exon8;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38268619 | 38268680 | 38268619 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38268412 | 38268505 | 38268412 | ID=MS.gene98925.t1.exon9;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38268412 | 38268505 | 38268412 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38268221 | 38268335 | 38268221 | ID=MS.gene98925.t1.exon10;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38268221 | 38268335 | 38268221 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38268057 | 38268133 | 38268057 | ID=MS.gene98925.t1.exon11;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38268057 | 38268133 | 38268057 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38267493 | 38267630 | 38267493 | ID=MS.gene98925.t1.exon12;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38267493 | 38267630 | 38267493 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38267086 | 38267253 | 38267086 | ID=MS.gene98925.t1.exon13;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38267086 | 38267253 | 38267086 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38266807 | 38266920 | 38266807 | ID=MS.gene98925.t1.exon14;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38266807 | 38266920 | 38266807 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38266523 | 38266619 | 38266523 | ID=MS.gene98925.t1.exon15;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38266523 | 38266619 | 38266523 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| chr6.2 | exon | 38266096 | 38266226 | 38266096 | ID=MS.gene98925.t1.exon16;Parent=MS.gene98925.t1 |
| chr6.2 | CDS | 38266096 | 38266226 | 38266096 | ID=cds.MS.gene98925.t1;Parent=MS.gene98925.t1 |
| Gene Sequence |
| Protein sequence |
