Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99092.t1 | AES99055.1 | 99 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 1.20E-108 | 402.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99092.t1 | Q9LEV3 | 81.6 | 206 | 37 | 1 | 1 | 205 | 1 | 206 | 2.2e-92 | 339.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99092.t1 | G7K5X3 | 99.0 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 8.4e-109 | 402.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47429 | MS.gene99092 | PPI |
| MS.gene029745 | MS.gene99092 | PPI |
| MS.gene065401 | MS.gene99092 | PPI |
| MS.gene051416 | MS.gene99092 | PPI |
| MS.gene065402 | MS.gene99092 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99092.t1 | MTR_5g076080 | 99.024 | 205 | 2 | 0 | 1 | 205 | 50 | 254 | 3.87e-152 | 422 |
| MS.gene99092.t1 | MTR_5g076080 | 99.024 | 205 | 2 | 0 | 1 | 205 | 1 | 205 | 1.97e-151 | 418 |
| MS.gene99092.t1 | MTR_5g076010 | 90.756 | 119 | 11 | 0 | 1 | 119 | 1 | 119 | 7.08e-70 | 223 |
| MS.gene99092.t1 | MTR_3g111940 | 48.309 | 207 | 102 | 4 | 1 | 205 | 1 | 204 | 1.23e-57 | 181 |
| MS.gene99092.t1 | MTR_6g037360 | 83.333 | 96 | 16 | 0 | 1 | 96 | 1 | 96 | 3.14e-54 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99092.t1 | AT5G10860 | 81.553 | 206 | 37 | 1 | 1 | 205 | 1 | 206 | 2.79e-125 | 352 |
| MS.gene99092.t1 | AT1G47271 | 47.594 | 187 | 96 | 2 | 19 | 205 | 8 | 192 | 1.88e-56 | 177 |
Find 64 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCGCAGAACTTTGGTATC+AGG | 0.270882 | 5.2:+64080635 | None:intergenic |
| GCGCTGATGGTTCCTGGCTT+TGG | 0.334908 | 5.2:-64081597 | MS.gene99092:CDS |
| ATCCCCGACCTTGGTGGACT+TGG | 0.359346 | 5.2:+64080992 | None:intergenic |
| GTAAAGGCGCTGATGGTTCC+TGG | 0.372640 | 5.2:-64081603 | MS.gene99092:CDS |
| AAAAGGCAACTGGCTGCAAC+AGG | 0.388839 | 5.2:+64081710 | None:intergenic |
| GCAATTGATTTCTCCTCCCC+TGG | 0.398515 | 5.2:+64081405 | None:intergenic |
| CGCTTGAATGCTTACATACA+AGG | 0.428996 | 5.2:-64080126 | MS.gene99092:CDS |
| TCAGACATCTTGCAAGGAAA+AGG | 0.429987 | 5.2:-64081625 | MS.gene99092:CDS |
| CATCCAAGTCCACCAAGGTC+GGG | 0.437806 | 5.2:-64080995 | MS.gene99092:CDS |
| CTGCATTGCTCGCAGAACTT+TGG | 0.445326 | 5.2:+64080628 | None:intergenic |
| GGGGAGGAGAAATCAATTGC+TGG | 0.452072 | 5.2:-64081402 | MS.gene99092:CDS |
| ACAAAACAATGTTGGTGCTT+TGG | 0.467003 | 5.2:-64081439 | MS.gene99092:CDS |
| ATTCCCTTGTCATTTATGAC+AGG | 0.472651 | 5.2:+64080216 | None:intergenic |
| TCAAACCGTGAAAAGGCAAC+TGG | 0.475093 | 5.2:+64081700 | None:intergenic |
| TGTTTATGATGCTGTCAAAT+CGG | 0.475200 | 5.2:-64081557 | MS.gene99092:intron |
| GCTTTGGTGGTCGTGAAACC+AGG | 0.480001 | 5.2:-64081423 | MS.gene99092:CDS |
| GATGTTGTTCGTGCTGTTGT+GGG | 0.482201 | 5.2:-64080171 | MS.gene99092:CDS |
| CGAGCAATGCAGCTGATGAC+TGG | 0.490351 | 5.2:-64080617 | MS.gene99092:intron |
| TGCTACACCTTCTCGTATTG+AGG | 0.490650 | 5.2:-64081674 | MS.gene99092:CDS |
| CTCGCAGAACTTTGGTATCA+GGG | 0.492406 | 5.2:+64080636 | None:intergenic |
| CATAATATCCCCGACCTTGG+TGG | 0.492904 | 5.2:+64080986 | None:intergenic |
| ATCTGTGGTGCACCAAAGCC+AGG | 0.513664 | 5.2:+64081585 | None:intergenic |
| AGATGTTGTTCGTGCTGTTG+TGG | 0.516829 | 5.2:-64080172 | MS.gene99092:CDS |
| GCTGGAATTATAACAGAAAG+AGG | 0.519325 | 5.2:-64081384 | MS.gene99092:intron |
| ATGCTCGGCATGGTGTCCAT+TGG | 0.523216 | 5.2:-64080195 | MS.gene99092:CDS |
| AGCAGACTCAAACCGTGAAA+AGG | 0.527310 | 5.2:+64081693 | None:intergenic |
| AACAGTGGTTCATACCTCTT+CGG | 0.527383 | 5.2:+64080962 | None:intergenic |
| AAGGCAACTGGCTGCAACAG+GGG | 0.531751 | 5.2:+64081712 | None:intergenic |
| CCTGAGGAAGATCATCGTGC+AGG | 0.535472 | 5.2:-64081024 | MS.gene99092:CDS |
| CCTGCACGATGATCTTCCTC+AGG | 0.537692 | 5.2:+64081024 | None:intergenic |
| TCATCCAAGTCCACCAAGGT+CGG | 0.552655 | 5.2:-64080996 | MS.gene99092:CDS |
| ATCCAAGTCCACCAAGGTCG+GGG | 0.557202 | 5.2:-64080994 | MS.gene99092:CDS |
| AAACAATGTTGGTGCTTTGG+TGG | 0.560729 | 5.2:-64081436 | MS.gene99092:CDS |
| ATCTTGCAAGGAAAAGGTAA+AGG | 0.561654 | 5.2:-64081619 | MS.gene99092:CDS |
| GGAAAAGGTAAAGGCGCTGA+TGG | 0.566636 | 5.2:-64081610 | MS.gene99092:CDS |
| TTCCCTTGTCATTTATGACA+GGG | 0.568159 | 5.2:+64080217 | None:intergenic |
| TTGCAAGATGTCTGAAATTG+TGG | 0.570234 | 5.2:+64081633 | None:intergenic |
| ATAAATGACAAGGGAATGCT+CGG | 0.572093 | 5.2:-64080210 | MS.gene99092:CDS |
| GGTCATAATATCCCCGACCT+TGG | 0.574226 | 5.2:+64080983 | None:intergenic |
| CCTTCTCGTATTGAGGAGCA+TGG | 0.585290 | 5.2:-64081667 | MS.gene99092:CDS |
| ACAATTTCAGACATCTTGCA+AGG | 0.588745 | 5.2:-64081631 | MS.gene99092:CDS |
| CTTTGGTGGTCGTGAAACCA+GGG | 0.598133 | 5.2:-64081422 | MS.gene99092:CDS |
| AGCACGAACAACATCTCCAA+TGG | 0.603380 | 5.2:+64080179 | None:intergenic |
| CATCCCTGTCATAAATGACA+AGG | 0.606441 | 5.2:-64080220 | MS.gene99092:CDS |
| TATTAGACAGCCAAAATGCA+AGG | 0.612518 | 5.2:-64081808 | None:intergenic |
| CTGAGGAAGATCATCGTGCA+GGG | 0.615519 | 5.2:-64081023 | MS.gene99092:CDS |
| ATCATAAACAGTGTCATCTG+TGG | 0.626836 | 5.2:+64081570 | None:intergenic |
| TGACAAGGGAATGCTCGGCA+TGG | 0.629614 | 5.2:-64080205 | MS.gene99092:CDS |
| CAGATGACACAAAACAATGT+TGG | 0.632418 | 5.2:-64081447 | MS.gene99092:CDS |
| GCTTGAATGCTTACATACAA+GGG | 0.636806 | 5.2:-64080125 | MS.gene99092:CDS |
| CCATGCTCCTCAATACGAGA+AGG | 0.637885 | 5.2:+64081667 | None:intergenic |
| CTTGAATGCTTACATACAAG+GGG | 0.645653 | 5.2:-64080124 | MS.gene99092:CDS |
| TCGCAGAACTTTGGTATCAG+GGG | 0.648663 | 5.2:+64080637 | None:intergenic |
| CTTGTATGTAAGCATTCAAG+CGG | 0.650554 | 5.2:+64080127 | None:intergenic |
| AAAGGCAACTGGCTGCAACA+GGG | 0.653192 | 5.2:+64081711 | None:intergenic |
| CGGGGATATTATGACCGAAG+AGG | 0.658203 | 5.2:-64080976 | MS.gene99092:intron |
| CTTGCTATCTAGATTACCTG+AGG | 0.659900 | 5.2:-64081040 | MS.gene99092:intron |
| ATCCCTGTCATAAATGACAA+GGG | 0.675254 | 5.2:-64080219 | MS.gene99092:CDS |
| GCAACAGGGGATTCACCATG+CGG | 0.686296 | 5.2:+64081725 | None:intergenic |
| GGTGGTCGTGAAACCAGGGG+AGG | 0.700076 | 5.2:-64081418 | MS.gene99092:CDS |
| TTTGGTGGTCGTGAAACCAG+GGG | 0.702988 | 5.2:-64081421 | MS.gene99092:CDS |
| AAGATCATCCAAGTCCACCA+AGG | 0.706227 | 5.2:-64081000 | MS.gene99092:CDS |
| TAGACAGCCAAAATGCAAGG+AGG | 0.707266 | 5.2:-64081805 | None:intergenic |
| TTGAATGCTTACATACAAGG+GGG | 0.750705 | 5.2:-64080123 | MS.gene99092:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGCAATATGATTTATAT+TGG | - | chr5.2:64080682-64080701 | MS.gene99092:intron | 20.0% |
| !! | AATAAGCAGATAAAAACTTA+TGG | - | chr5.2:64081534-64081553 | MS.gene99092:intron | 20.0% |
| !! | ACAAATAATATTTGCCAATT+TGG | + | chr5.2:64081081-64081100 | None:intergenic | 20.0% |
| !! | ACGTTAATGACAAATATAAT+TGG | + | chr5.2:64080833-64080852 | None:intergenic | 20.0% |
| !! | TTAAACTATTAATCCAAACA+AGG | + | chr5.2:64081440-64081459 | None:intergenic | 20.0% |
| !! | TTTATATTGGAGAAGAAAAA+CGG | - | chr5.2:64080695-64080714 | MS.gene99092:intron | 20.0% |
| ! | AATAGTCTAATAAGTAACAG+TGG | + | chr5.2:64080965-64080984 | None:intergenic | 25.0% |
| ! | ATGACAAATATAATTGGAAG+TGG | + | chr5.2:64080827-64080846 | None:intergenic | 25.0% |
| !!! | CTGGTATTGATATGTTTTTT+CGG | - | chr5.2:64081311-64081330 | MS.gene99092:intron | 25.0% |
| ACAACTCGACATCTTAAATA+AGG | - | chr5.2:64081392-64081411 | MS.gene99092:CDS | 30.0% | |
| ATAATATTTGCCAATTTGGC+AGG | + | chr5.2:64081077-64081096 | None:intergenic | 30.0% | |
| CATTATGACAAGTGAGTTAA+TGG | + | chr5.2:64080737-64080756 | None:intergenic | 30.0% | |
| GAAATAACTGCATGAACATT+TGG | + | chr5.2:64080553-64080572 | None:intergenic | 30.0% | |
| TAATATTTGCCAATTTGGCA+GGG | + | chr5.2:64081076-64081095 | None:intergenic | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | - | chr5.2:64081612-64081631 | MS.gene99092:CDS | 30.0% | |
| TGGTTATCTTCACAAGATAT+TGG | - | chr5.2:64080617-64080636 | MS.gene99092:intron | 30.0% | |
| TGTTTATGATGCTGTCAAAT+CGG | - | chr5.2:64080352-64080371 | MS.gene99092:intron | 30.0% | |
| TTAACTCACTTGTCATAATG+TGG | - | chr5.2:64080737-64080756 | MS.gene99092:intron | 30.0% | |
| TTGATATTGCCTATTAAGCA+GGG | - | chr5.2:64081135-64081154 | MS.gene99092:intron | 30.0% | |
| ! | CGTTTGATATTTCTATCCAA+AGG | + | chr5.2:64081338-64081357 | None:intergenic | 30.0% |
| ! | GCATCCTTTTGTCAATATAT+TGG | - | chr5.2:64080772-64080791 | MS.gene99092:intron | 30.0% |
| ! | TTAATGGATCTCAGGTTATT+AGG | + | chr5.2:64080721-64080740 | None:intergenic | 30.0% |
| ! | TTTTGTCAATATATTGGACG+CGG | - | chr5.2:64080778-64080797 | MS.gene99092:intron | 30.0% |
| !! | AGTTATTTCTTTGGGTGTAA+TGG | - | chr5.2:64080564-64080583 | MS.gene99092:intron | 30.0% |
| !! | GTTCATGCAGTTATTTCTTT+GGG | - | chr5.2:64080556-64080575 | MS.gene99092:intron | 30.0% |
| !! | TAACAGAGTTTGTTGTGTAA+TGG | - | chr5.2:64080588-64080607 | MS.gene99092:intron | 30.0% |
| !! | TGTTCATGCAGTTATTTCTT+TGG | - | chr5.2:64080555-64080574 | MS.gene99092:intron | 30.0% |
| !! | TTGCGATCATTTTTGTCAAA+CGG | - | chr5.2:64080128-64080147 | MS.gene99092:CDS | 30.0% |
| !! | TTGTTGTGTAATGGATAACT+TGG | - | chr5.2:64080597-64080616 | MS.gene99092:intron | 30.0% |
| AACAGTATTGCAAGTGCTTA+TGG | - | chr5.2:64081577-64081596 | MS.gene99092:CDS | 35.0% | |
| AAGCTATCATGAAGAGCTTA+TGG | - | chr5.2:64081510-64081529 | MS.gene99092:intron | 35.0% | |
| ACAATTTCAGACATCTTGCA+AGG | - | chr5.2:64080278-64080297 | MS.gene99092:intron | 35.0% | |
| ATAAATGACAAGGGAATGCT+CGG | - | chr5.2:64081699-64081718 | MS.gene99092:CDS | 35.0% | |
| ATCATAAACAGTGTCATCTG+TGG | + | chr5.2:64080342-64080361 | None:intergenic | 35.0% | |
| ATCCCTGTCATAAATGACAA+GGG | - | chr5.2:64081690-64081709 | MS.gene99092:CDS | 35.0% | |
| ATCTTGCAAGGAAAAGGTAA+AGG | - | chr5.2:64080290-64080309 | MS.gene99092:intron | 35.0% | |
| ATTATGGTACCCTGCTTAAT+AGG | + | chr5.2:64081147-64081166 | None:intergenic | 35.0% | |
| CAGATGACACAAAACAATGT+TGG | - | chr5.2:64080462-64080481 | MS.gene99092:intron | 35.0% | |
| CCTGTTATCTGGAAGAAAAA+AGG | + | chr5.2:64081661-64081680 | None:intergenic | 35.0% | |
| CTTGAATGCTTACATACAAG+GGG | - | chr5.2:64081785-64081804 | MS.gene99092:CDS | 35.0% | |
| CTTGTATGTAAGCATTCAAG+CGG | + | chr5.2:64081785-64081804 | None:intergenic | 35.0% | |
| GAATAAGAACCTGTTTGGAT+TGG | + | chr5.2:64081624-64081643 | None:intergenic | 35.0% | |
| GACTAGAATAAGAACCTGTT+TGG | + | chr5.2:64081629-64081648 | None:intergenic | 35.0% | |
| GCGTCCAATATATTGACAAA+AGG | + | chr5.2:64080779-64080798 | None:intergenic | 35.0% | |
| GCTGGAATTATAACAGAAAG+AGG | - | chr5.2:64080525-64080544 | MS.gene99092:intron | 35.0% | |
| GCTTGAATGCTTACATACAA+GGG | - | chr5.2:64081784-64081803 | MS.gene99092:CDS | 35.0% | |
| GTTATCTGGAAGAAAAAAGG+TGG | + | chr5.2:64081658-64081677 | None:intergenic | 35.0% | |
| GTTGATATTGCCTATTAAGC+AGG | - | chr5.2:64081134-64081153 | MS.gene99092:intron | 35.0% | |
| GTTGTAGCATGTTTCACTAT+AGG | - | chr5.2:64081414-64081433 | MS.gene99092:CDS | 35.0% | |
| TAAGCACTTGCAATACTGTT+TGG | + | chr5.2:64081577-64081596 | None:intergenic | 35.0% | |
| TACCATAATTAGGGCAACAT+AGG | - | chr5.2:64081158-64081177 | MS.gene99092:intron | 35.0% | |
| TTCCTATGTTGCCCTAATTA+TGG | + | chr5.2:64081163-64081182 | None:intergenic | 35.0% | |
| TTGAATGCTTACATACAAGG+GGG | - | chr5.2:64081786-64081805 | MS.gene99092:CDS | 35.0% | |
| ! | ACAAAACAATGTTGGTGCTT+TGG | - | chr5.2:64080470-64080489 | MS.gene99092:intron | 35.0% |
| ! | ATTCCCTTGTCATTTATGAC+AGG | + | chr5.2:64081696-64081715 | None:intergenic | 35.0% |
| ! | TAAGCAGGGTACCATAATTA+GGG | - | chr5.2:64081149-64081168 | MS.gene99092:intron | 35.0% |
| ! | TTAAGCAGGGTACCATAATT+AGG | - | chr5.2:64081148-64081167 | MS.gene99092:intron | 35.0% |
| ! | TTCCCTTGTCATTTATGACA+GGG | + | chr5.2:64081695-64081714 | None:intergenic | 35.0% |
| ! | TTGCAAGATGTCTGAAATTG+TGG | + | chr5.2:64080279-64080298 | None:intergenic | 35.0% |
| !! | GATATTGGCTTACATCAAAC+TGG | - | chr5.2:64080632-64080651 | MS.gene99092:CDS | 35.0% |
| !! | TGCGATCATTTTTGTCAAAC+GGG | - | chr5.2:64080129-64080148 | MS.gene99092:CDS | 35.0% |
| !!! | CCTTTTTTCTTCCAGATAAC+AGG | - | chr5.2:64081658-64081677 | MS.gene99092:CDS | 35.0% |
| !!! | GATATGTTTTTTCGGTCCTT+TGG | - | chr5.2:64081319-64081338 | MS.gene99092:intron | 35.0% |
| AACAGTGGTTCATACCTCTT+CGG | + | chr5.2:64080950-64080969 | None:intergenic | 40.0% | |
| ACTCACTTGTCATAATGTGG+TGG | - | chr5.2:64080740-64080759 | MS.gene99092:intron | 40.0% | |
| ATGTGTCTGATCCTGTTATC+TGG | + | chr5.2:64081672-64081691 | None:intergenic | 40.0% | |
| CATCCCTGTCATAAATGACA+AGG | - | chr5.2:64081689-64081708 | MS.gene99092:CDS | 40.0% | |
| CGCTTGAATGCTTACATACA+AGG | - | chr5.2:64081783-64081802 | MS.gene99092:CDS | 40.0% | |
| GCACACGACACATTCAAATT+TGG | + | chr5.2:64080658-64080677 | None:intergenic | 40.0% | |
| TCAGACATCTTGCAAGGAAA+AGG | - | chr5.2:64080284-64080303 | MS.gene99092:intron | 40.0% | |
| ! | AAACAATGTTGGTGCTTTGG+TGG | - | chr5.2:64080473-64080492 | MS.gene99092:intron | 40.0% |
| ! | CAAGTGAGTTAATGGATCTC+AGG | + | chr5.2:64080729-64080748 | None:intergenic | 40.0% |
| ! | CTTGCTATCTAGATTACCTG+AGG | - | chr5.2:64080869-64080888 | MS.gene99092:intron | 40.0% |
| !! | GTTTCACTATAGGCCTTGTT+TGG | - | chr5.2:64081424-64081443 | MS.gene99092:CDS | 40.0% |
| AAGATCATCCAAGTCCACCA+AGG | - | chr5.2:64080909-64080928 | MS.gene99092:intron | 45.0% | |
| AGCACGAACAACATCTCCAA+TGG | + | chr5.2:64081733-64081752 | None:intergenic | 45.0% | |
| AGCAGACTCAAACCGTGAAA+AGG | + | chr5.2:64080219-64080238 | None:intergenic | 45.0% | |
| CACTTGTCATAATGTGGTGG+AGG | - | chr5.2:64080743-64080762 | MS.gene99092:intron | 45.0% | |
| CTCGCAGAACTTTGGTATCA+GGG | + | chr5.2:64081276-64081295 | None:intergenic | 45.0% | |
| CTGTATGCAAAGTTCAGCAG+TGG | - | chr5.2:64081112-64081131 | MS.gene99092:intron | 45.0% | |
| TCAAACCGTGAAAAGGCAAC+TGG | + | chr5.2:64080212-64080231 | None:intergenic | 45.0% | |
| TCGCAGAACTTTGGTATCAG+GGG | + | chr5.2:64081275-64081294 | None:intergenic | 45.0% | |
| TGCTACACCTTCTCGTATTG+AGG | - | chr5.2:64080235-64080254 | MS.gene99092:CDS | 45.0% | |
| ! | AGATGTTGTTCGTGCTGTTG+TGG | - | chr5.2:64081737-64081756 | MS.gene99092:CDS | 45.0% |
| ! | GATGTTGTTCGTGCTGTTGT+GGG | - | chr5.2:64081738-64081757 | MS.gene99092:CDS | 45.0% |
| AAAAGGCAACTGGCTGCAAC+AGG | + | chr5.2:64080202-64080221 | None:intergenic | 50.0% | |
| AAAGGCAACTGGCTGCAACA+GGG | + | chr5.2:64080201-64080220 | None:intergenic | 50.0% | |
| CATAATATCCCCGACCTTGG+TGG | + | chr5.2:64080926-64080945 | None:intergenic | 50.0% | |
| CCATGCTCCTCAATACGAGA+AGG | + | chr5.2:64080245-64080264 | None:intergenic | 50.0% | |
| CCTTCTCGTATTGAGGAGCA+TGG | - | chr5.2:64080242-64080261 | MS.gene99092:intron | 50.0% | |
| CGGGGATATTATGACCGAAG+AGG | - | chr5.2:64080933-64080952 | MS.gene99092:intron | 50.0% | |
| CTGAGGAAGATCATCGTGCA+GGG | - | chr5.2:64080886-64080905 | MS.gene99092:intron | 50.0% | |
| CTGCATTGCTCGCAGAACTT+TGG | + | chr5.2:64081284-64081303 | None:intergenic | 50.0% | |
| GCTCGCAGAACTTTGGTATC+AGG | + | chr5.2:64081277-64081296 | None:intergenic | 50.0% | |
| GGGGAGGAGAAATCAATTGC+TGG | - | chr5.2:64080507-64080526 | MS.gene99092:intron | 50.0% | |
| GGTCATAATATCCCCGACCT+TGG | + | chr5.2:64080929-64080948 | None:intergenic | 50.0% | |
| TCATCCAAGTCCACCAAGGT+CGG | - | chr5.2:64080913-64080932 | MS.gene99092:intron | 50.0% | |
| ! | CTTTGGTGGTCGTGAAACCA+GGG | - | chr5.2:64080487-64080506 | MS.gene99092:intron | 50.0% |
| ! | GCAATTGATTTCTCCTCCCC+TGG | + | chr5.2:64080507-64080526 | None:intergenic | 50.0% |
| ! | TGCAGCCAGTTGCCTTTTCA+CGG | - | chr5.2:64080204-64080223 | MS.gene99092:CDS | 50.0% |
| ! | TGTTTTGCAACGAGTCCGCA+TGG | - | chr5.2:64080169-64080188 | MS.gene99092:CDS | 50.0% |
| ! | TTTGGTGGTCGTGAAACCAG+GGG | - | chr5.2:64080488-64080507 | MS.gene99092:intron | 50.0% |
| !! | GGAAAAGGTAAAGGCGCTGA+TGG | - | chr5.2:64080299-64080318 | MS.gene99092:intron | 50.0% |
| AAGGCAACTGGCTGCAACAG+GGG | + | chr5.2:64080200-64080219 | None:intergenic | 55.0% | |
| ATCCAAGTCCACCAAGGTCG+GGG | - | chr5.2:64080915-64080934 | MS.gene99092:intron | 55.0% | |
| ATCTGTGGTGCACCAAAGCC+AGG | + | chr5.2:64080327-64080346 | None:intergenic | 55.0% | |
| ATGCTCGGCATGGTGTCCAT+TGG | - | chr5.2:64081714-64081733 | MS.gene99092:CDS | 55.0% | |
| CATCCAAGTCCACCAAGGTC+GGG | - | chr5.2:64080914-64080933 | MS.gene99092:intron | 55.0% | |
| CCTGAGGAAGATCATCGTGC+AGG | - | chr5.2:64080885-64080904 | MS.gene99092:intron | 55.0% | |
| CCTGCACGATGATCTTCCTC+AGG | + | chr5.2:64080888-64080907 | None:intergenic | 55.0% | |
| CGAGCAATGCAGCTGATGAC+TGG | - | chr5.2:64081292-64081311 | MS.gene99092:intron | 55.0% | |
| GCAACAGGGGATTCACCATG+CGG | + | chr5.2:64080187-64080206 | None:intergenic | 55.0% | |
| TCAGCGATGCCCTGCCAAAT+TGG | - | chr5.2:64081064-64081083 | MS.gene99092:intron | 55.0% | |
| TGACAAGGGAATGCTCGGCA+TGG | - | chr5.2:64081704-64081723 | MS.gene99092:CDS | 55.0% | |
| ! | GCTTTGGTGGTCGTGAAACC+AGG | - | chr5.2:64080486-64080505 | MS.gene99092:intron | 55.0% |
| !! | GTAAAGGCGCTGATGGTTCC+TGG | - | chr5.2:64080306-64080325 | MS.gene99092:intron | 55.0% |
| ! | GCGCTGATGGTTCCTGGCTT+TGG | - | chr5.2:64080312-64080331 | MS.gene99092:intron | 60.0% |
| !! | ATCCCCGACCTTGGTGGACT+TGG | + | chr5.2:64080920-64080939 | None:intergenic | 60.0% |
| GGTGGTCGTGAAACCAGGGG+AGG | - | chr5.2:64080491-64080510 | MS.gene99092:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 64080116 | 64081815 | 64080116 | ID=MS.gene99092 |
| chr5.2 | mRNA | 64080116 | 64081815 | 64080116 | ID=MS.gene99092.t1;Parent=MS.gene99092 |
| chr5.2 | exon | 64081558 | 64081815 | 64081558 | ID=MS.gene99092.t1.exon1;Parent=MS.gene99092.t1 |
| chr5.2 | CDS | 64081558 | 64081815 | 64081558 | ID=cds.MS.gene99092.t1;Parent=MS.gene99092.t1 |
| chr5.2 | exon | 64081385 | 64081466 | 64081385 | ID=MS.gene99092.t1.exon2;Parent=MS.gene99092.t1 |
| chr5.2 | CDS | 64081385 | 64081466 | 64081385 | ID=cds.MS.gene99092.t1;Parent=MS.gene99092.t1 |
| chr5.2 | exon | 64080977 | 64081050 | 64080977 | ID=MS.gene99092.t1.exon3;Parent=MS.gene99092.t1 |
| chr5.2 | CDS | 64080977 | 64081050 | 64080977 | ID=cds.MS.gene99092.t1;Parent=MS.gene99092.t1 |
| chr5.2 | exon | 64080618 | 64080678 | 64080618 | ID=MS.gene99092.t1.exon4;Parent=MS.gene99092.t1 |
| chr5.2 | CDS | 64080618 | 64080678 | 64080618 | ID=cds.MS.gene99092.t1;Parent=MS.gene99092.t1 |
| chr5.2 | exon | 64080116 | 64080258 | 64080116 | ID=MS.gene99092.t1.exon5;Parent=MS.gene99092.t1 |
| chr5.2 | CDS | 64080116 | 64080258 | 64080116 | ID=cds.MS.gene99092.t1;Parent=MS.gene99092.t1 |
| Gene Sequence |
| Protein sequence |
