Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99254.t1 | XP_003601083.1 | 93 | 445 | 28 | 2 | 1 | 443 | 1 | 444 | 2.80E-232 | 814.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99254.t1 | G7J3K0 | 93.0 | 445 | 28 | 2 | 1 | 443 | 1 | 444 | 2.0e-232 | 814.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049821 | MS.gene99254 | 0.803196 | 3.91E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene99254 | 0.826235 | 3.03E-54 | -1.69E-46 |
| MS.gene050137 | MS.gene99254 | 0.809552 | 1.79E-50 | -1.69E-46 |
| MS.gene052142 | MS.gene99254 | 0.801248 | 9.85E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene99254 | 0.812129 | 4.95E-51 | -1.69E-46 |
| MS.gene059006 | MS.gene99254 | 0.803738 | 3.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99254.t1 | MTR_3g072840 | 93.034 | 445 | 28 | 2 | 1 | 443 | 1 | 444 | 0.0 | 808 |
| MS.gene99254.t1 | MTR_3g072830 | 54.343 | 449 | 187 | 9 | 1 | 439 | 1 | 441 | 2.15e-150 | 435 |
| MS.gene99254.t1 | MTR_3g007470 | 63.610 | 349 | 124 | 3 | 96 | 443 | 36 | 382 | 4.83e-144 | 416 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99254.t1 | AT2G41705 | 50.824 | 425 | 194 | 7 | 25 | 440 | 37 | 455 | 6.06e-118 | 353 |
| MS.gene99254.t1 | AT2G41705 | 50.824 | 425 | 194 | 7 | 25 | 440 | 37 | 455 | 6.06e-118 | 353 |
| MS.gene99254.t1 | AT2G41705 | 50.824 | 425 | 194 | 7 | 25 | 440 | 37 | 455 | 6.06e-118 | 353 |
| MS.gene99254.t1 | AT2G41705 | 50.824 | 425 | 194 | 7 | 25 | 440 | 37 | 455 | 6.06e-118 | 353 |
Find 87 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATCTGCCATCAAATA+TGG | 0.217091 | 3.4:-71614039 | MS.gene99254:intron |
| AGGACTTCAATTTGGTCTAT+TGG | 0.243981 | 3.4:-71612446 | MS.gene99254:CDS |
| TGTCGATCATCATTGGTTTC+TGG | 0.244597 | 3.4:-71613077 | MS.gene99254:CDS |
| CCCATCTTTGTTTCAACAAA+TGG | 0.261732 | 3.4:-71614711 | MS.gene99254:CDS |
| TGGTGATATTAGCTTTGTTA+TGG | 0.283155 | 3.4:-71612927 | MS.gene99254:CDS |
| GCCTGCATTGTTGGACCTCT+TGG | 0.293298 | 3.4:-71612838 | MS.gene99254:CDS |
| AGACTTAACGAGTGCGAAAT+TGG | 0.297010 | 3.4:-71612787 | MS.gene99254:CDS |
| TCATTTGGACCAAGTGGTTT+TGG | 0.299453 | 3.4:-71614089 | MS.gene99254:CDS |
| TGATAGAAAACAAGCATCTT+TGG | 0.307803 | 3.4:-71612378 | MS.gene99254:CDS |
| GGACTTCAATTTGGTCTATT+GGG | 0.318154 | 3.4:-71612445 | MS.gene99254:CDS |
| CTCACTCACATTCTTGAAAC+AGG | 0.318173 | 3.4:+71612286 | None:intergenic |
| ACAATATAGTTATTATTAGA+TGG | 0.318561 | 3.4:+71614753 | None:intergenic |
| TTATATATCAAACCAGAAAA+TGG | 0.319807 | 3.4:-71614816 | MS.gene99254:CDS |
| GTGATAACAGGACTTCAATT+TGG | 0.320323 | 3.4:-71612454 | MS.gene99254:CDS |
| TACTTATTGCAAAAGTCATT+TGG | 0.339763 | 3.4:-71614104 | MS.gene99254:CDS |
| GGTGATATTAGCTTTGTTAT+GGG | 0.342133 | 3.4:-71612926 | MS.gene99254:CDS |
| GGCAATTCATGTTCCATTGC+AGG | 0.342935 | 3.4:+71614777 | None:intergenic |
| CACTGGATCTTGTCTTTGCT+CGG | 0.345396 | 3.4:-71613346 | MS.gene99254:CDS |
| TGTTTCGTGTCTAACTCATT+TGG | 0.377439 | 3.4:-71614505 | MS.gene99254:CDS |
| TTGTTGGACCTCTTGGTGTA+TGG | 0.380313 | 3.4:-71612831 | MS.gene99254:CDS |
| GACCTCTTGGTGTATGGCTT+AGG | 0.383143 | 3.4:-71612825 | MS.gene99254:CDS |
| GGTCTAACAACCGGCTACTT+AGG | 0.389772 | 3.4:-71613427 | MS.gene99254:CDS |
| TCTTTGCTCGGCTTTGTACT+AGG | 0.391256 | 3.4:-71613334 | MS.gene99254:intron |
| TCCATTTGTTGAAACAAAGA+TGG | 0.393314 | 3.4:+71614710 | None:intergenic |
| AATTGTGATACTGTGATAAC+AGG | 0.402053 | 3.4:-71612466 | MS.gene99254:CDS |
| AAAACTTACTGATTTCTTGA+GGG | 0.431062 | 3.4:+71612684 | None:intergenic |
| GTTGGGGTTCTGCAGTTAGC+AGG | 0.434224 | 3.4:-71614965 | MS.gene99254:CDS |
| CATGGAGCGAACGAGCAGTT+GGG | 0.449685 | 3.4:-71614982 | MS.gene99254:CDS |
| GCCTAACAACTTTCAGCGGC+TGG | 0.451556 | 3.4:-71613402 | MS.gene99254:CDS |
| TCCAGCCGCTGAAAGTTGTT+AGG | 0.453775 | 3.4:+71613401 | None:intergenic |
| TGACAGCTTCCCTCGTCAAT+TGG | 0.455108 | 3.4:-71612968 | MS.gene99254:CDS |
| CTGGTTTGATATATAAAGAC+AGG | 0.458399 | 3.4:+71614823 | None:intergenic |
| GTAGCATTGTCGATCATCAT+TGG | 0.460693 | 3.4:-71613084 | MS.gene99254:CDS |
| TTGTGGTTAGCCTGCATTGT+TGG | 0.460887 | 3.4:-71612847 | MS.gene99254:CDS |
| ATGCTCGAGCTCAGTGTCGC+TGG | 0.460917 | 3.4:-71613370 | MS.gene99254:CDS |
| CGAAACAAATTCCAGTAGCT+TGG | 0.472897 | 3.4:+71614521 | None:intergenic |
| GTCTAACAACCGGCTACTTA+GGG | 0.474314 | 3.4:-71613426 | MS.gene99254:CDS |
| CTAGCCATTGGTCTAACAAC+CGG | 0.476478 | 3.4:-71613436 | MS.gene99254:CDS |
| CAGAGGCGAACCATATTTGA+TGG | 0.478725 | 3.4:+71614029 | None:intergenic |
| CCATTTGTTGAAACAAAGAT+GGG | 0.483747 | 3.4:+71614711 | None:intergenic |
| AGCTCAGTGTCGCTGGACAC+TGG | 0.485522 | 3.4:-71613363 | MS.gene99254:CDS |
| ATGGGGTGTGAGTAGTGCTT+TGG | 0.485675 | 3.4:-71612908 | MS.gene99254:CDS |
| CATGAAGTTACCCAAGCTAC+TGG | 0.489022 | 3.4:-71614532 | MS.gene99254:CDS |
| GAGAGCATTTGTCTATGCTA+TGG | 0.494452 | 3.4:-71612356 | MS.gene99254:CDS |
| AAAAGAAAATGAAACGCAAA+TGG | 0.498184 | 3.4:+71612330 | None:intergenic |
| CCAACTGCTCGTTCGCTCCA+TGG | 0.502807 | 3.4:+71614983 | None:intergenic |
| GAAACAAATTCCAGTAGCTT+GGG | 0.506298 | 3.4:+71614522 | None:intergenic |
| CCATGGAGCGAACGAGCAGT+TGG | 0.508369 | 3.4:-71614983 | MS.gene99254:CDS |
| CTTTGTTTCAACAAATGGAA+AGG | 0.511711 | 3.4:-71614706 | MS.gene99254:CDS |
| CATTGGTTTCTGGACGGCGA+AGG | 0.512919 | 3.4:-71613067 | MS.gene99254:CDS |
| GTGATATTAGCTTTGTTATG+GGG | 0.520721 | 3.4:-71612925 | MS.gene99254:CDS |
| GGTAGTGACGATAGTGTTGT+TGG | 0.522919 | 3.4:-71612947 | MS.gene99254:CDS |
| AACGAGTGCGAAATTGGAGG+AGG | 0.526946 | 3.4:-71612781 | MS.gene99254:CDS |
| GGAGGAAGGAAAAGTGAGAG+TGG | 0.527956 | 3.4:-71614855 | MS.gene99254:CDS |
| CCATATTTGATGGCAGATCA+AGG | 0.532230 | 3.4:+71614039 | None:intergenic |
| ATTGGTTTCTGGACGGCGAA+GGG | 0.538719 | 3.4:-71613066 | MS.gene99254:CDS |
| TGTTTCTGCTGCTTGTATCA+CGG | 0.540208 | 3.4:-71612719 | MS.gene99254:CDS |
| GGACGGCGAAGGGATTCAAA+TGG | 0.542568 | 3.4:-71613056 | MS.gene99254:CDS |
| TATATCAAAACTAAACTGGA+AGG | 0.543094 | 3.4:-71612992 | MS.gene99254:CDS |
| ACCAAGAGGTCCAACAATGC+AGG | 0.546644 | 3.4:+71612837 | None:intergenic |
| CTGGTCACGCCAAAACCACT+TGG | 0.550500 | 3.4:+71614080 | None:intergenic |
| CAAAAGTCATTTGGACCAAG+TGG | 0.552223 | 3.4:-71614095 | MS.gene99254:CDS |
| ACTTACTGATTTCTTGAGGG+TGG | 0.554227 | 3.4:+71612687 | None:intergenic |
| TGTTAGGCTCCCTAAGTAGC+CGG | 0.558390 | 3.4:+71613417 | None:intergenic |
| GTATCTGAACATCTAGCCAT+TGG | 0.561646 | 3.4:-71613448 | MS.gene99254:CDS |
| GGAAGGAAAAGTGAGAGTGG+TGG | 0.583294 | 3.4:-71614852 | MS.gene99254:CDS |
| GATACAAGCAGCAGAAACAT+TGG | 0.593081 | 3.4:+71612723 | None:intergenic |
| AAGATGGGGAGGTGTTCTTG+TGG | 0.601171 | 3.4:+71614726 | None:intergenic |
| CTTAACGAGTGCGAAATTGG+AGG | 0.610168 | 3.4:-71612784 | MS.gene99254:CDS |
| ACGAGTGCGAAATTGGAGGA+GGG | 0.618522 | 3.4:-71612780 | MS.gene99254:CDS |
| ATTTGTGTACAATCCTGCAA+TGG | 0.626316 | 3.4:-71614790 | MS.gene99254:CDS |
| GGGAGCCTAACAACTTTCAG+CGG | 0.627758 | 3.4:-71613406 | MS.gene99254:CDS |
| ATGGAGCGAACGAGCAGTTG+GGG | 0.627866 | 3.4:-71614981 | MS.gene99254:CDS |
| AACCTAAGCCATACACCAAG+AGG | 0.629036 | 3.4:+71612823 | None:intergenic |
| TTGTTGAAACAAAGATGGGG+AGG | 0.633512 | 3.4:+71614715 | None:intergenic |
| GATCATCATTGGTTTCTGGA+CGG | 0.641979 | 3.4:-71613073 | MS.gene99254:CDS |
| GTAGCCGGTTGTTAGACCAA+TGG | 0.643579 | 3.4:+71613432 | None:intergenic |
| CATTTGTTGAAACAAAGATG+GGG | 0.646994 | 3.4:+71614712 | None:intergenic |
| GGCTAGATGTTCAGATACGT+AGG | 0.652546 | 3.4:+71613453 | None:intergenic |
| TCACTCACATTCTTGAAACA+GGG | 0.660582 | 3.4:+71612287 | None:intergenic |
| ATATAGTTATTATTAGATGG+CGG | 0.673569 | 3.4:+71614756 | None:intergenic |
| GTGTGTCAAAATGTAGATGT+TGG | 0.674681 | 3.4:-71614936 | MS.gene99254:CDS |
| ATCGTCACTACCAATTGACG+AGG | 0.676634 | 3.4:+71612958 | None:intergenic |
| GAAGCTGAGAATCGTGAGTG+TGG | 0.687844 | 3.4:-71614906 | MS.gene99254:CDS |
| TAAATATGCAGGTCTTAACG+AGG | 0.700815 | 3.4:-71614127 | MS.gene99254:intron |
| GTGGTGGTGAAGCTCAGTTG+TGG | 0.736786 | 3.4:-71612864 | MS.gene99254:CDS |
| TCGTCACTACCAATTGACGA+GGG | 0.749970 | 3.4:+71612959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATAGTTATTATTAGA+TGG | + | chr3.4:71612522-71612541 | None:intergenic | 15.0% |
| !! | ATAATTCCTAAGATTAAAAA+TGG | - | chr3.4:71613524-71613543 | MS.gene99254:intron | 15.0% |
| !! | TAATATTTCAAAATAGTCTA+TGG | - | chr3.4:71614669-71614688 | MS.gene99254:intron | 15.0% |
| !! | TATATCATTAACAACAAAAA+AGG | + | chr3.4:71612636-71612655 | None:intergenic | 15.0% |
| !! | TTTAATAAAATGCATTTGAT+AGG | + | chr3.4:71613680-71613699 | None:intergenic | 15.0% |
| !!! | TTTATTTCTTTGAATTCTAA+AGG | - | chr3.4:71613284-71613303 | MS.gene99254:intron | 15.0% |
| !! | AAATAGAGAAAAAAAACTCA+AGG | + | chr3.4:71612839-71612858 | None:intergenic | 20.0% |
| !! | AATTGTCATAATAAATATGC+AGG | - | chr3.4:71613134-71613153 | MS.gene99254:intron | 20.0% |
| !! | AATTTCAACAACAAATTAGA+CGG | - | chr3.4:71612949-71612968 | MS.gene99254:CDS | 20.0% |
| !! | ATATAGTTATTATTAGATGG+CGG | + | chr3.4:71612519-71612538 | None:intergenic | 20.0% |
| !! | ATGTGTTAAATTATGTTTAG+TGG | - | chr3.4:71612986-71613005 | MS.gene99254:CDS | 20.0% |
| !! | GAAATAAATGAGTTCAAAAA+TGG | - | chr3.4:71614386-71614405 | MS.gene99254:intron | 20.0% |
| !! | TGATTAATGAATATAACTAG+TGG | - | chr3.4:71613010-71613029 | MS.gene99254:CDS | 20.0% |
| !! | TGCATATTTATTATGACAAT+TGG | + | chr3.4:71613135-71613154 | None:intergenic | 20.0% |
| !! | TTATATATCAAACCAGAAAA+TGG | - | chr3.4:71612456-71612475 | MS.gene99254:CDS | 20.0% |
| !!! | ATAGTTCCATTTTTAATCTT+AGG | + | chr3.4:71613533-71613552 | None:intergenic | 20.0% |
| !!! | ATGCTTTTACTTTGTTTTTT+AGG | - | chr3.4:71612704-71612723 | MS.gene99254:CDS | 20.0% |
| !!! | ATGTTAGTAAATTTAGAGTA+TGG | - | chr3.4:71613347-71613366 | MS.gene99254:CDS | 20.0% |
| !!! | CTTTTATATCAAAACTAAAC+TGG | - | chr3.4:71614276-71614295 | MS.gene99254:intron | 20.0% |
| ! | AAAAGAAAATGAAACGCAAA+TGG | + | chr3.4:71614945-71614964 | None:intergenic | 25.0% |
| ! | AAAGCAATTCAAGTCTTTAT+TGG | - | chr3.4:71613417-71613436 | MS.gene99254:CDS | 25.0% |
| ! | AAATAACCATGGTAGTTATA+AGG | - | chr3.4:71613322-71613341 | MS.gene99254:intron | 25.0% |
| ! | ATAAATGAGTTCAAAAATGG+TGG | - | chr3.4:71614389-71614408 | MS.gene99254:intron | 25.0% |
| ! | CATATTAAGAAGAGTTTGTA+AGG | - | chr3.4:71614138-71614157 | MS.gene99254:intron | 25.0% |
| ! | GGAAATATGTTAAATGAGTT+TGG | - | chr3.4:71612899-71612918 | MS.gene99254:CDS | 25.0% |
| ! | TAAAAGGAGAAAAATAACCA+TGG | - | chr3.4:71613311-71613330 | MS.gene99254:intron | 25.0% |
| ! | TAATGAATATAACTAGTGGA+TGG | - | chr3.4:71613014-71613033 | MS.gene99254:CDS | 25.0% |
| ! | TACTTATTGCAAAAGTCATT+TGG | - | chr3.4:71613168-71613187 | MS.gene99254:intron | 25.0% |
| ! | TATATCAAAACTAAACTGGA+AGG | - | chr3.4:71614280-71614299 | MS.gene99254:intron | 25.0% |
| ! | TTATCATGATGACTAAATCT+TGG | - | chr3.4:71613370-71613389 | MS.gene99254:CDS | 25.0% |
| ! | TTTCTTGATGTTAAAGAGTA+TGG | - | chr3.4:71612867-71612886 | MS.gene99254:CDS | 25.0% |
| !! | ATTGCTATAAACCTGATTTT+TGG | - | chr3.4:71614766-71614785 | MS.gene99254:CDS | 25.0% |
| !! | ATTTGCGTTTCATTTTCTTT+TGG | - | chr3.4:71614944-71614963 | MS.gene99254:CDS | 25.0% |
| !! | GAATTCTAAAGGAGAATAAA+AGG | - | chr3.4:71613295-71613314 | MS.gene99254:intron | 25.0% |
| !! | GAATTTTTGACACATGATTT+TGG | - | chr3.4:71614729-71614748 | MS.gene99254:CDS | 25.0% |
| !! | TTTGCGTTTCATTTTCTTTT+GGG | - | chr3.4:71614945-71614964 | MS.gene99254:CDS | 25.0% |
| !!! | AAAAACTTACTGATTTCTTG+AGG | + | chr3.4:71614592-71614611 | None:intergenic | 25.0% |
| !!! | AAAACTTACTGATTTCTTGA+GGG | + | chr3.4:71614591-71614610 | None:intergenic | 25.0% |
| !!! | ACTTCTATTTTTGCTTTCTT+AGG | - | chr3.4:71613631-71613650 | MS.gene99254:intron | 25.0% |
| !!! | TGGTTTGGTTTTGTTTTTAA+AGG | - | chr3.4:71613788-71613807 | MS.gene99254:intron | 25.0% |
| !!! | TTACTTTGTTTTTTAGGTTC+TGG | - | chr3.4:71612710-71612729 | MS.gene99254:CDS | 25.0% |
| AAGAAGAGTTTGTAAGGAAA+TGG | - | chr3.4:71614144-71614163 | MS.gene99254:intron | 30.0% | |
| AATTGTGATACTGTGATAAC+AGG | - | chr3.4:71614806-71614825 | MS.gene99254:CDS | 30.0% | |
| ACATAACCTTATAACTACCA+TGG | + | chr3.4:71613331-71613350 | None:intergenic | 30.0% | |
| ATAAGTGCGATTTAAAGACT+AGG | - | chr3.4:71613963-71613982 | MS.gene99254:intron | 30.0% | |
| TGATAGAAAACAAGCATCTT+TGG | - | chr3.4:71614894-71614913 | MS.gene99254:CDS | 30.0% | |
| TGTGAAGACATAAAACAAGT+AGG | - | chr3.4:71612594-71612613 | MS.gene99254:intron | 30.0% | |
| TTGCTTTCTTAGGATCAATA+TGG | - | chr3.4:71613641-71613660 | MS.gene99254:intron | 30.0% | |
| ! | AAATTGTACTAGTTTCCTCA+CGG | - | chr3.4:71612674-71612693 | MS.gene99254:intron | 30.0% |
| ! | CATTTGTTGAAACAAAGATG+GGG | + | chr3.4:71612563-71612582 | None:intergenic | 30.0% |
| ! | CCATTTGTTGAAACAAAGAT+GGG | + | chr3.4:71612564-71612583 | None:intergenic | 30.0% |
| ! | CTGGTTTGATATATAAAGAC+AGG | + | chr3.4:71612452-71612471 | None:intergenic | 30.0% |
| ! | CTTTGTTTCAACAAATGGAA+AGG | - | chr3.4:71612566-71612585 | MS.gene99254:intron | 30.0% |
| ! | CTTTTACACATTTTCCAGAT+TGG | - | chr3.4:71613749-71613768 | MS.gene99254:intron | 30.0% |
| ! | GTAAGGAAATGGAATTTTGT+AGG | - | chr3.4:71614155-71614174 | MS.gene99254:intron | 30.0% |
| ! | TACACAAATGTTCCATTTTC+TGG | + | chr3.4:71612471-71612490 | None:intergenic | 30.0% |
| ! | TCCATTTGTTGAAACAAAGA+TGG | + | chr3.4:71612565-71612584 | None:intergenic | 30.0% |
| ! | TCTAATCTCATTTTACAGCA+TGG | + | chr3.4:71614085-71614104 | None:intergenic | 30.0% |
| ! | TTTTTGACACATGATTTTGG+AGG | - | chr3.4:71614732-71614751 | MS.gene99254:CDS | 30.0% |
| !! | ACTTGAATTGCTTTTCAATC+AGG | + | chr3.4:71613411-71613430 | None:intergenic | 30.0% |
| !! | GGTGATATTAGCTTTGTTAT+GGG | - | chr3.4:71614346-71614365 | MS.gene99254:intron | 30.0% |
| !! | GTGATATTAGCTTTGTTATG+GGG | - | chr3.4:71614347-71614366 | MS.gene99254:intron | 30.0% |
| !! | TGGTGATATTAGCTTTGTTA+TGG | - | chr3.4:71614345-71614364 | MS.gene99254:intron | 30.0% |
| !!! | CAGATTGGTTCCTTTTTTAT+GGG | - | chr3.4:71613764-71613783 | MS.gene99254:intron | 30.0% |
| !!! | TTTTGAAATGGCTTCGATTT+GGG | - | chr3.4:71614516-71614535 | MS.gene99254:CDS | 30.0% |
| !!! | TTTTTGAAATGGCTTCGATT+TGG | - | chr3.4:71614515-71614534 | MS.gene99254:CDS | 30.0% |
| AAAATGGAACTATCTGTTCC+AGG | - | chr3.4:71613540-71613559 | MS.gene99254:intron | 35.0% | |
| AATGAGTTCAAAAATGGTGG+TGG | - | chr3.4:71614392-71614411 | MS.gene99254:intron | 35.0% | |
| ACCAAACCATCCCATAAAAA+AGG | + | chr3.4:71613777-71613796 | None:intergenic | 35.0% | |
| AGGACTTCAATTTGGTCTAT+TGG | - | chr3.4:71614826-71614845 | MS.gene99254:CDS | 35.0% | |
| ATTTGTGTACAATCCTGCAA+TGG | - | chr3.4:71612482-71612501 | MS.gene99254:intron | 35.0% | |
| CCATAAAAAAGGAACCAATC+TGG | + | chr3.4:71613766-71613785 | None:intergenic | 35.0% | |
| CTACTCGACGCAATTAAATT+AGG | - | chr3.4:71613073-71613092 | MS.gene99254:CDS | 35.0% | |
| GAAAAAAAACTCAAGGTCAC+AGG | + | chr3.4:71612832-71612851 | None:intergenic | 35.0% | |
| GAAACAAATTCCAGTAGCTT+GGG | + | chr3.4:71612753-71612772 | None:intergenic | 35.0% | |
| GCTGCATTAACTAACATGTT+TGG | - | chr3.4:71613444-71613463 | MS.gene99254:CDS | 35.0% | |
| GGACTTCAATTTGGTCTATT+GGG | - | chr3.4:71614827-71614846 | MS.gene99254:CDS | 35.0% | |
| GTAAAAAACGGTATGATCAC+TGG | + | chr3.4:71613214-71613233 | None:intergenic | 35.0% | |
| GTGATAACAGGACTTCAATT+TGG | - | chr3.4:71614818-71614837 | MS.gene99254:CDS | 35.0% | |
| GTGTGTCAAAATGTAGATGT+TGG | - | chr3.4:71612336-71612355 | MS.gene99254:CDS | 35.0% | |
| TAAATATGCAGGTCTTAACG+AGG | - | chr3.4:71613145-71613164 | MS.gene99254:intron | 35.0% | |
| TGGCAGATCAAGGTAAAAAA+CGG | + | chr3.4:71613226-71613245 | None:intergenic | 35.0% | |
| TGTTTCGTGTCTAACTCATT+TGG | - | chr3.4:71612767-71612786 | MS.gene99254:CDS | 35.0% | |
| ! | CCCATCTTTGTTTCAACAAA+TGG | - | chr3.4:71612561-71612580 | MS.gene99254:intron | 35.0% |
| ! | GCAAGAGATATAGCTTTTCA+AGG | - | chr3.4:71612396-71612415 | MS.gene99254:CDS | 35.0% |
| ! | TAAAGAGTATGGTAGATGCT+AGG | - | chr3.4:71612878-71612897 | MS.gene99254:CDS | 35.0% |
| !! | AGAGATATAGCTTTTCAAGG+AGG | - | chr3.4:71612399-71612418 | MS.gene99254:CDS | 35.0% |
| !! | ATATAGCTTTTCAAGGAGGA+AGG | - | chr3.4:71612403-71612422 | MS.gene99254:CDS | 35.0% |
| !! | CTAACTCATTTGGCTGTTTT+TGG | - | chr3.4:71612777-71612796 | MS.gene99254:CDS | 35.0% |
| !!! | ATAAACCTGATTTTTGGTGC+AGG | - | chr3.4:71614772-71614791 | MS.gene99254:CDS | 35.0% |
| !!! | CCAGATTGGTTCCTTTTTTA+TGG | - | chr3.4:71613763-71613782 | MS.gene99254:intron | 35.0% |
| !!! | TCCTTTTTTATGGGATGGTT+TGG | - | chr3.4:71613773-71613792 | MS.gene99254:intron | 35.0% |
| !!! | TTGGTTCCTTTTTTATGGGA+TGG | - | chr3.4:71613768-71613787 | MS.gene99254:intron | 35.0% |
| AATGCTTCAAGCTCAAAACC+TGG | + | chr3.4:71613561-71613580 | None:intergenic | 40.0% | |
| AGACTTAACGAGTGCGAAAT+TGG | - | chr3.4:71614485-71614504 | MS.gene99254:CDS | 40.0% | |
| ATTCACCTGCACCAAAAATC+AGG | + | chr3.4:71614780-71614799 | None:intergenic | 40.0% | |
| CAAAAGTCATTTGGACCAAG+TGG | - | chr3.4:71613177-71613196 | MS.gene99254:intron | 40.0% | |
| CCTTGATCTGCCATCAAATA+TGG | - | chr3.4:71613233-71613252 | MS.gene99254:intron | 40.0% | |
| CGAAACAAATTCCAGTAGCT+TGG | + | chr3.4:71612754-71612773 | None:intergenic | 40.0% | |
| CGACGCAATTAAATTAGGAG+AGG | - | chr3.4:71613078-71613097 | MS.gene99254:CDS | 40.0% | |
| CTAAGAATCAGTGAATGCAG+AGG | + | chr3.4:71613263-71613282 | None:intergenic | 40.0% | |
| GATACAAGCAGCAGAAACAT+TGG | + | chr3.4:71614552-71614571 | None:intergenic | 40.0% | |
| GTAGCATTGTCGATCATCAT+TGG | - | chr3.4:71614188-71614207 | MS.gene99254:intron | 40.0% | |
| GTATCTGAACATCTAGCCAT+TGG | - | chr3.4:71613824-71613843 | MS.gene99254:intron | 40.0% | |
| TGCGTCGAGTAGATGATTAA+TGG | + | chr3.4:71613065-71613084 | None:intergenic | 40.0% | |
| TTGTTGAAACAAAGATGGGG+AGG | + | chr3.4:71612560-71612579 | None:intergenic | 40.0% | |
| ! | CCATATTTGATGGCAGATCA+AGG | + | chr3.4:71613236-71613255 | None:intergenic | 40.0% |
| ! | TCATTTGGACCAAGTGGTTT+TGG | - | chr3.4:71613183-71613202 | MS.gene99254:intron | 40.0% |
| ! | TGTTTCTGCTGCTTGTATCA+CGG | - | chr3.4:71614553-71614572 | MS.gene99254:intron | 40.0% |
| !! | ACTTACTGATTTCTTGAGGG+TGG | + | chr3.4:71614588-71614607 | None:intergenic | 40.0% |
| !! | GAGAGCATTTGTCTATGCTA+TGG | - | chr3.4:71614916-71614935 | MS.gene99254:CDS | 40.0% |
| !! | GATCATCATTGGTTTCTGGA+CGG | - | chr3.4:71614199-71614218 | MS.gene99254:intron | 40.0% |
| !! | TGTCGATCATCATTGGTTTC+TGG | - | chr3.4:71614195-71614214 | MS.gene99254:intron | 40.0% |
| !! | TTGGAGGAGGGTTTTTGAAA+TGG | - | chr3.4:71614504-71614523 | MS.gene99254:CDS | 40.0% |
| !!! | TGGCTGTTTTTGGCATTCTT+GGG | - | chr3.4:71612787-71612806 | MS.gene99254:CDS | 40.0% |
| !!! | TTGGCTGTTTTTGGCATTCT+TGG | - | chr3.4:71612786-71612805 | MS.gene99254:CDS | 40.0% |
| AACCTAAGCCATACACCAAG+AGG | + | chr3.4:71614452-71614471 | None:intergenic | 45.0% | |
| ATCGTCACTACCAATTGACG+AGG | + | chr3.4:71614317-71614336 | None:intergenic | 45.0% | |
| CACTGGATCTTGTCTTTGCT+CGG | - | chr3.4:71613926-71613945 | MS.gene99254:intron | 45.0% | |
| CAGAGGCGAACCATATTTGA+TGG | + | chr3.4:71613246-71613265 | None:intergenic | 45.0% | |
| CATGAAGTTACCCAAGCTAC+TGG | - | chr3.4:71612740-71612759 | MS.gene99254:CDS | 45.0% | |
| CTTAACGAGTGCGAAATTGG+AGG | - | chr3.4:71614488-71614507 | MS.gene99254:CDS | 45.0% | |
| GGCAATTCATGTTCCATTGC+AGG | + | chr3.4:71612498-71612517 | None:intergenic | 45.0% | |
| GGCTAGATGTTCAGATACGT+AGG | + | chr3.4:71613822-71613841 | None:intergenic | 45.0% | |
| GGTAGTGACGATAGTGTTGT+TGG | - | chr3.4:71614325-71614344 | MS.gene99254:intron | 45.0% | |
| GTCTAACAACCGGCTACTTA+GGG | - | chr3.4:71613846-71613865 | MS.gene99254:intron | 45.0% | |
| TCGTCACTACCAATTGACGA+GGG | + | chr3.4:71614316-71614335 | None:intergenic | 45.0% | |
| ! | CTAGCCATTGGTCTAACAAC+CGG | - | chr3.4:71613836-71613855 | MS.gene99254:intron | 45.0% |
| ! | TACTAGTTTCCTCACGGTTG+AGG | - | chr3.4:71612680-71612699 | MS.gene99254:intron | 45.0% |
| ! | TCTTTGCTCGGCTTTGTACT+AGG | - | chr3.4:71613938-71613957 | MS.gene99254:intron | 45.0% |
| ! | TTGTTGGACCTCTTGGTGTA+TGG | - | chr3.4:71614441-71614460 | MS.gene99254:intron | 45.0% |
| !! | TTGTGGTTAGCCTGCATTGT+TGG | - | chr3.4:71614425-71614444 | MS.gene99254:intron | 45.0% |
| !!! | GGCTGTTTTTGGCATTCTTG+GGG | - | chr3.4:71612788-71612807 | MS.gene99254:CDS | 45.0% |
| AACGAGTGCGAAATTGGAGG+AGG | - | chr3.4:71614491-71614510 | MS.gene99254:CDS | 50.0% | |
| ACCAAGAGGTCCAACAATGC+AGG | + | chr3.4:71614438-71614457 | None:intergenic | 50.0% | |
| ACGAGTGCGAAATTGGAGGA+GGG | - | chr3.4:71614492-71614511 | MS.gene99254:CDS | 50.0% | |
| ATGGGGTGTGAGTAGTGCTT+TGG | - | chr3.4:71614364-71614383 | MS.gene99254:intron | 50.0% | |
| GAAGCTGAGAATCGTGAGTG+TGG | - | chr3.4:71612366-71612385 | MS.gene99254:CDS | 50.0% | |
| GGAAGGAAAAGTGAGAGTGG+TGG | - | chr3.4:71612420-71612439 | MS.gene99254:CDS | 50.0% | |
| GGAGGAAGGAAAAGTGAGAG+TGG | - | chr3.4:71612417-71612436 | MS.gene99254:CDS | 50.0% | |
| GGGAGCCTAACAACTTTCAG+CGG | - | chr3.4:71613866-71613885 | MS.gene99254:intron | 50.0% | |
| GGTCTAACAACCGGCTACTT+AGG | - | chr3.4:71613845-71613864 | MS.gene99254:intron | 50.0% | |
| GTAGCCGGTTGTTAGACCAA+TGG | + | chr3.4:71613843-71613862 | None:intergenic | 50.0% | |
| TCCAGCCGCTGAAAGTTGTT+AGG | + | chr3.4:71613874-71613893 | None:intergenic | 50.0% | |
| TGACAGCTTCCCTCGTCAAT+TGG | - | chr3.4:71614304-71614323 | MS.gene99254:intron | 50.0% | |
| TGTTAGGCTCCCTAAGTAGC+CGG | + | chr3.4:71613858-71613877 | None:intergenic | 50.0% | |
| ! | AAAAGCATGCCTCAACCGTG+AGG | + | chr3.4:71612692-71612711 | None:intergenic | 50.0% |
| ! | ATTGGTTTCTGGACGGCGAA+GGG | - | chr3.4:71614206-71614225 | MS.gene99254:intron | 50.0% |
| ! | GACCTCTTGGTGTATGGCTT+AGG | - | chr3.4:71614447-71614466 | MS.gene99254:intron | 50.0% |
| !! | AAGATGGGGAGGTGTTCTTG+TGG | + | chr3.4:71612549-71612568 | None:intergenic | 50.0% |
| ATGGAGCGAACGAGCAGTTG+GGG | - | chr3.4:71612291-71612310 | MS.gene99254:CDS | 55.0% | |
| CTGGTCACGCCAAAACCACT+TGG | + | chr3.4:71613195-71613214 | None:intergenic | 55.0% | |
| GCCTAACAACTTTCAGCGGC+TGG | - | chr3.4:71613870-71613889 | MS.gene99254:intron | 55.0% | |
| GCCTGCATTGTTGGACCTCT+TGG | - | chr3.4:71614434-71614453 | MS.gene99254:intron | 55.0% | |
| GGACGGCGAAGGGATTCAAA+TGG | - | chr3.4:71614216-71614235 | MS.gene99254:intron | 55.0% | |
| GTTGGGGTTCTGCAGTTAGC+AGG | - | chr3.4:71612307-71612326 | MS.gene99254:CDS | 55.0% | |
| ! | GTGGTGGTGAAGCTCAGTTG+TGG | - | chr3.4:71614408-71614427 | MS.gene99254:intron | 55.0% |
| !! | CATTGGTTTCTGGACGGCGA+AGG | - | chr3.4:71614205-71614224 | MS.gene99254:intron | 55.0% |
| ATGCTCGAGCTCAGTGTCGC+TGG | - | chr3.4:71613902-71613921 | MS.gene99254:intron | 60.0% | |
| ! | AGCTCAGTGTCGCTGGACAC+TGG | - | chr3.4:71613909-71613928 | MS.gene99254:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71612291 | 71615003 | 71612291 | ID=MS.gene99254 |
| chr3.4 | mRNA | 71612291 | 71615003 | 71612291 | ID=MS.gene99254.t1;Parent=MS.gene99254 |
| chr3.4 | exon | 71614683 | 71615003 | 71614683 | ID=MS.gene99254.t1.exon1;Parent=MS.gene99254.t1 |
| chr3.4 | CDS | 71614683 | 71615003 | 71614683 | ID=cds.MS.gene99254.t1;Parent=MS.gene99254.t1 |
| chr3.4 | exon | 71614485 | 71614568 | 71614485 | ID=MS.gene99254.t1.exon2;Parent=MS.gene99254.t1 |
| chr3.4 | CDS | 71614485 | 71614568 | 71614485 | ID=cds.MS.gene99254.t1;Parent=MS.gene99254.t1 |
| chr3.4 | exon | 71614040 | 71614138 | 71614040 | ID=MS.gene99254.t1.exon3;Parent=MS.gene99254.t1 |
| chr3.4 | CDS | 71614040 | 71614138 | 71614040 | ID=cds.MS.gene99254.t1;Parent=MS.gene99254.t1 |
| chr3.4 | exon | 71613335 | 71613527 | 71613335 | ID=MS.gene99254.t1.exon4;Parent=MS.gene99254.t1 |
| chr3.4 | CDS | 71613335 | 71613527 | 71613335 | ID=cds.MS.gene99254.t1;Parent=MS.gene99254.t1 |
| chr3.4 | exon | 71612693 | 71613117 | 71612693 | ID=MS.gene99254.t1.exon5;Parent=MS.gene99254.t1 |
| chr3.4 | CDS | 71612693 | 71613117 | 71612693 | ID=cds.MS.gene99254.t1;Parent=MS.gene99254.t1 |
| chr3.4 | exon | 71612291 | 71612500 | 71612291 | ID=MS.gene99254.t1.exon6;Parent=MS.gene99254.t1 |
| chr3.4 | CDS | 71612291 | 71612500 | 71612291 | ID=cds.MS.gene99254.t1;Parent=MS.gene99254.t1 |
| Gene Sequence |
| Protein sequence |
