Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99388.t1 | XP_003617084.1 | 88.9 | 262 | 22 | 1 | 1 | 262 | 1 | 255 | 5.10E-109 | 404.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99388.t1 | Q9ZVD2 | 43.8 | 267 | 138 | 3 | 1 | 262 | 1 | 260 | 3.6e-55 | 216.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99388.t1 | G7K2X8 | 88.9 | 262 | 22 | 1 | 1 | 262 | 1 | 255 | 3.7e-109 | 404.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051127 | MS.gene99388 | 0.806365 | 8.52E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene99388 | 0.818459 | 1.94E-52 | -1.69E-46 |
| MS.gene051651 | MS.gene99388 | 0.835473 | 1.64E-56 | -1.69E-46 |
| MS.gene053887 | MS.gene99388 | 0.805153 | 1.53E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene99388 | 0.805378 | 1.37E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene99388 | 0.801771 | 7.69E-49 | -1.69E-46 |
| MS.gene057548 | MS.gene99388 | 0.801938 | 7.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99388.t1 | MTR_5g087760 | 90.458 | 262 | 18 | 1 | 1 | 262 | 1 | 255 | 8.61e-172 | 474 |
| MS.gene99388.t1 | MTR_3g078800 | 60.687 | 262 | 92 | 4 | 1 | 261 | 1 | 252 | 5.75e-101 | 295 |
| MS.gene99388.t1 | MTR_2g012550 | 54.887 | 266 | 113 | 4 | 1 | 261 | 1 | 264 | 2.70e-97 | 286 |
| MS.gene99388.t1 | MTR_3g078810 | 58.273 | 139 | 55 | 2 | 116 | 253 | 1 | 137 | 4.75e-53 | 169 |
| MS.gene99388.t1 | MTR_3g078820 | 46.734 | 199 | 102 | 2 | 57 | 255 | 6 | 200 | 2.39e-52 | 169 |
| MS.gene99388.t1 | MTR_1g077560 | 33.058 | 242 | 149 | 4 | 22 | 261 | 20 | 250 | 7.59e-35 | 125 |
| MS.gene99388.t1 | MTR_5g076170 | 32.384 | 281 | 152 | 6 | 1 | 261 | 1 | 263 | 7.80e-35 | 126 |
| MS.gene99388.t1 | MTR_3g074150 | 28.085 | 235 | 145 | 6 | 34 | 255 | 28 | 251 | 1.97e-30 | 114 |
| MS.gene99388.t1 | MTR_8g090320 | 29.956 | 227 | 133 | 7 | 36 | 254 | 43 | 251 | 1.52e-27 | 107 |
| MS.gene99388.t1 | MTR_3g063310 | 35.088 | 171 | 106 | 3 | 93 | 261 | 85 | 252 | 3.23e-26 | 103 |
| MS.gene99388.t1 | MTR_2g100060 | 29.801 | 151 | 101 | 3 | 89 | 238 | 77 | 223 | 4.04e-19 | 84.3 |
| MS.gene99388.t1 | MTR_2g011350 | 29.333 | 150 | 102 | 2 | 88 | 237 | 35 | 180 | 2.52e-18 | 80.9 |
| MS.gene99388.t1 | MTR_3g104460 | 24.876 | 201 | 140 | 6 | 71 | 262 | 58 | 256 | 3.79e-18 | 81.6 |
| MS.gene99388.t1 | MTR_7g106050 | 28.889 | 180 | 119 | 4 | 58 | 237 | 7 | 177 | 1.68e-16 | 76.3 |
| MS.gene99388.t1 | MTR_8g016370 | 25.121 | 207 | 124 | 4 | 59 | 262 | 45 | 223 | 1.85e-16 | 76.6 |
| MS.gene99388.t1 | MTR_7g106010 | 28.718 | 195 | 127 | 5 | 61 | 248 | 21 | 210 | 6.33e-15 | 72.4 |
| MS.gene99388.t1 | MTR_7g106000 | 25.581 | 215 | 140 | 7 | 48 | 256 | 18 | 218 | 6.24e-14 | 69.7 |
| MS.gene99388.t1 | MTR_4g119428 | 25.843 | 178 | 120 | 4 | 72 | 241 | 43 | 216 | 2.57e-13 | 68.2 |
| MS.gene99388.t1 | MTR_2g086790 | 28.108 | 185 | 115 | 5 | 62 | 237 | 12 | 187 | 3.13e-13 | 67.4 |
| MS.gene99388.t1 | MTR_7g106120 | 27.097 | 155 | 105 | 3 | 73 | 222 | 14 | 165 | 5.54e-12 | 63.5 |
| MS.gene99388.t1 | MTR_1g057270 | 27.517 | 149 | 103 | 3 | 94 | 241 | 74 | 218 | 8.16e-12 | 63.9 |
| MS.gene99388.t1 | MTR_7g106100 | 28.448 | 116 | 75 | 3 | 74 | 186 | 70 | 180 | 8.20e-12 | 63.9 |
| MS.gene99388.t1 | MTR_7g105970 | 26.776 | 183 | 122 | 5 | 65 | 241 | 30 | 206 | 1.21e-11 | 63.2 |
| MS.gene99388.t1 | MTR_7g118270 | 24.118 | 170 | 118 | 6 | 77 | 242 | 46 | 208 | 2.63e-11 | 62.0 |
| MS.gene99388.t1 | MTR_7g105870 | 28.718 | 195 | 133 | 4 | 48 | 241 | 16 | 205 | 9.03e-11 | 60.5 |
| MS.gene99388.t1 | MTR_2g090225 | 26.829 | 164 | 112 | 5 | 101 | 261 | 62 | 220 | 9.50e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99388.t1 | AT2G27080 | 49.430 | 263 | 129 | 2 | 1 | 262 | 1 | 260 | 1.75e-93 | 276 |
| MS.gene99388.t1 | AT2G27080 | 49.430 | 263 | 129 | 2 | 1 | 262 | 1 | 260 | 1.75e-93 | 276 |
| MS.gene99388.t1 | AT5G21130 | 42.489 | 233 | 127 | 3 | 31 | 261 | 53 | 280 | 2.89e-68 | 213 |
| MS.gene99388.t1 | AT1G65690 | 34.946 | 186 | 112 | 3 | 80 | 261 | 72 | 252 | 7.58e-33 | 120 |
| MS.gene99388.t1 | AT5G36970 | 34.826 | 201 | 126 | 2 | 63 | 261 | 51 | 248 | 7.91e-33 | 120 |
| MS.gene99388.t1 | AT1G54540 | 37.688 | 199 | 116 | 4 | 67 | 261 | 45 | 239 | 5.86e-31 | 115 |
| MS.gene99388.t1 | AT2G35980 | 31.771 | 192 | 123 | 4 | 48 | 238 | 16 | 200 | 1.37e-25 | 100 |
| MS.gene99388.t1 | AT2G22180 | 29.915 | 234 | 134 | 8 | 30 | 255 | 74 | 285 | 5.03e-25 | 100 |
| MS.gene99388.t1 | AT5G22870 | 28.804 | 184 | 123 | 3 | 74 | 255 | 26 | 203 | 8.06e-19 | 82.4 |
| MS.gene99388.t1 | AT3G11650 | 26.131 | 199 | 134 | 5 | 49 | 238 | 19 | 213 | 1.38e-17 | 79.7 |
| MS.gene99388.t1 | AT5G06320 | 28.655 | 171 | 114 | 5 | 74 | 241 | 45 | 210 | 1.04e-14 | 71.6 |
| MS.gene99388.t1 | AT3G44220 | 26.582 | 158 | 107 | 2 | 86 | 237 | 23 | 177 | 3.45e-14 | 70.1 |
| MS.gene99388.t1 | AT1G17620 | 29.150 | 247 | 143 | 9 | 3 | 238 | 4 | 229 | 7.67e-14 | 70.1 |
| MS.gene99388.t1 | AT3G52470 | 23.837 | 172 | 121 | 2 | 71 | 242 | 20 | 181 | 8.45e-14 | 68.9 |
| MS.gene99388.t1 | AT5G11890 | 25.397 | 252 | 174 | 5 | 1 | 238 | 1 | 252 | 4.46e-13 | 68.2 |
| MS.gene99388.t1 | AT5G22200 | 26.506 | 166 | 116 | 2 | 96 | 261 | 43 | 202 | 3.14e-12 | 64.7 |
| MS.gene99388.t1 | AT4G01410 | 29.012 | 162 | 110 | 3 | 79 | 239 | 46 | 203 | 4.05e-12 | 64.7 |
Find 67 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTATCTAACGGTGGTTT+TGG | 0.234163 | 5.1:+69163003 | None:intergenic |
| CTGATTCCAATCTTGTCATT+AGG | 0.246576 | 5.1:+69162649 | None:intergenic |
| TGATTCCAATCTTGTCATTA+GGG | 0.261930 | 5.1:+69162650 | None:intergenic |
| GTCATTGCTGCTGCCTTTGC+TGG | 0.267823 | 5.1:-69162861 | MS.gene99388:CDS |
| ATGGTGTAGTTTGGTGCTTT+TGG | 0.307744 | 5.1:+69162766 | None:intergenic |
| TAAAGTTGATTGCGATTTGA+TGG | 0.330884 | 5.1:-69162368 | MS.gene99388:CDS |
| AATCTTGTCATTAGGGTTAT+CGG | 0.335947 | 5.1:+69162657 | None:intergenic |
| ATCGAAAACATCACCATTAG+AGG | 0.339924 | 5.1:-69162745 | MS.gene99388:CDS |
| AACATCGTTACATTATTTGA+TGG | 0.341147 | 5.1:+69162547 | None:intergenic |
| TAAACAGGAAGTGTCGTTAA+TGG | 0.346591 | 5.1:-69162452 | MS.gene99388:CDS |
| ATGTTCAAGATGATGTTAAA+AGG | 0.359878 | 5.1:-69162529 | MS.gene99388:CDS |
| CATGTCTTTATAGAAGATTT+CGG | 0.395125 | 5.1:+69162606 | None:intergenic |
| TAAGTTCCCGCTGGTGGAAC+AGG | 0.405478 | 5.1:+69162982 | None:intergenic |
| GGTTATGTTGATTCCTCTAA+TGG | 0.420063 | 5.1:+69162732 | None:intergenic |
| CAAATCGCAATCAACTTTAA+CGG | 0.421844 | 5.1:+69162372 | None:intergenic |
| CGTTCTCCGGTGGAGGGACT+CGG | 0.427677 | 5.1:+69162929 | None:intergenic |
| ACGGCGGATTGTGGAGAAAC+TGG | 0.429245 | 5.1:+69163033 | None:intergenic |
| TGCTGCCTTTGCTGGTTCAT+CGG | 0.431687 | 5.1:-69162853 | MS.gene99388:CDS |
| GGTGAAGGCGCAAACTAAAC+AGG | 0.438000 | 5.1:-69162467 | MS.gene99388:CDS |
| GGTAATCTTCCATGTCTTAA+CGG | 0.440219 | 5.1:+69162393 | None:intergenic |
| CGGCGAGCGTTCTCCGGTGG+AGG | 0.444100 | 5.1:+69162922 | None:intergenic |
| GATAACCCTAATGACAAGAT+TGG | 0.444221 | 5.1:-69162655 | MS.gene99388:CDS |
| ACCTCACCGTTGTCCACGAC+AGG | 0.451059 | 5.1:-69162712 | MS.gene99388:CDS |
| AGAAACTGGTGGTGAGTCAC+GGG | 0.452693 | 5.1:+69163047 | None:intergenic |
| TTCATCCTCATCATGCTCCT+TGG | 0.458150 | 5.1:-69162823 | MS.gene99388:CDS |
| TCGTAACGGCGAGCGTTCTC+CGG | 0.469179 | 5.1:+69162916 | None:intergenic |
| ATGCTCCTTGGCATTGCCGC+CGG | 0.472124 | 5.1:-69162811 | MS.gene99388:CDS |
| GAGAAACTGGTGGTGAGTCA+CGG | 0.515282 | 5.1:+69163046 | None:intergenic |
| GATAAGCCTGTTCCACCAGC+GGG | 0.518021 | 5.1:-69162988 | MS.gene99388:CDS |
| ACTCGGTGGACTATGTCCTT+AGG | 0.520498 | 5.1:+69162946 | None:intergenic |
| TGCGTGTGTATTGTTCGTAA+CGG | 0.546416 | 5.1:+69162902 | None:intergenic |
| AAATGCCGGCGGCAATGCCA+AGG | 0.555138 | 5.1:+69162806 | None:intergenic |
| TTTGATGGTTGATAAAACGA+TGG | 0.557392 | 5.1:+69162562 | None:intergenic |
| TAACGGCGAGCGTTCTCCGG+TGG | 0.572538 | 5.1:+69162919 | None:intergenic |
| AGCAAAGGCAGCAGCAATGA+CGG | 0.576642 | 5.1:+69162863 | None:intergenic |
| GGCGAGCGTTCTCCGGTGGA+GGG | 0.579485 | 5.1:+69162923 | None:intergenic |
| ATGACATAAGTTCCCGCTGG+TGG | 0.581824 | 5.1:+69162976 | None:intergenic |
| AAAGACATGAGGCTATGTAA+TGG | 0.585290 | 5.1:-69162592 | MS.gene99388:CDS |
| AGCGCCGGTGAAAATAAAAG+TGG | 0.592248 | 5.1:-69162419 | MS.gene99388:CDS |
| GGAGCAACAACGGCGGATTG+TGG | 0.594330 | 5.1:+69163024 | None:intergenic |
| GAAAACAAGGTAGAAAATGC+CGG | 0.595652 | 5.1:+69162792 | None:intergenic |
| AATGGTTAAATTGAGAGCGC+CGG | 0.596689 | 5.1:-69162434 | MS.gene99388:CDS |
| AGCAGCAATGACGGTTCCGA+CGG | 0.601585 | 5.1:+69162872 | None:intergenic |
| GAGATCCCTGTCGTGGACAA+CGG | 0.602303 | 5.1:+69162706 | None:intergenic |
| TTATGTCATCAAGATTCCTA+AGG | 0.604429 | 5.1:-69162962 | MS.gene99388:CDS |
| TTATTCCGATGAACCAGCAA+AGG | 0.611947 | 5.1:+69162848 | None:intergenic |
| GAAACTGGTGGTGAGTCACG+GGG | 0.614394 | 5.1:+69163048 | None:intergenic |
| AAGTGGGGTCCGTTAAGACA+TGG | 0.615102 | 5.1:-69162402 | MS.gene99388:CDS |
| TTTACAGTGACGTCAAACTC+CGG | 0.615574 | 5.1:+69162682 | None:intergenic |
| AGTCCACCGAGTCCCTCCAC+CGG | 0.620496 | 5.1:-69162935 | MS.gene99388:CDS |
| CTCCGGTGAGATCCCTGTCG+TGG | 0.623676 | 5.1:+69162699 | None:intergenic |
| CAATGCCAAGGAGCATGATG+AGG | 0.628051 | 5.1:+69162818 | None:intergenic |
| GGTGGAACAGGCTTATCTAA+CGG | 0.633024 | 5.1:+69162994 | None:intergenic |
| GCGCCGGTGAAAATAAAAGT+GGG | 0.634072 | 5.1:-69162418 | MS.gene99388:CDS |
| AGATAAGCCTGTTCCACCAG+CGG | 0.645323 | 5.1:-69162989 | MS.gene99388:CDS |
| TTGATGACATAAGTTCCCGC+TGG | 0.648569 | 5.1:+69162973 | None:intergenic |
| CCCTGTCGTGGACAACGGTG+AGG | 0.651755 | 5.1:+69162711 | None:intergenic |
| CCTCACCGTTGTCCACGACA+GGG | 0.652593 | 5.1:-69162711 | MS.gene99388:CDS |
| TCTCCGGTGGAGGGACTCGG+TGG | 0.663709 | 5.1:+69162932 | None:intergenic |
| AAATCTTCTATAAAGACATG+AGG | 0.673600 | 5.1:-69162603 | MS.gene99388:CDS |
| GGAACAGGCTTATCTAACGG+TGG | 0.679378 | 5.1:+69162997 | None:intergenic |
| GTCCACGACAGGGATCTCAC+CGG | 0.684231 | 5.1:-69162701 | MS.gene99388:CDS |
| CGCCGGTGAAAATAAAAGTG+GGG | 0.685150 | 5.1:-69162417 | MS.gene99388:CDS |
| AAACTGGTGGTGAGTCACGG+GGG | 0.699574 | 5.1:+69163049 | None:intergenic |
| AACAAGGTAGAAAATGCCGG+CGG | 0.726121 | 5.1:+69162795 | None:intergenic |
| ACACACGCAAGAAACACCGT+CGG | 0.735673 | 5.1:-69162888 | MS.gene99388:CDS |
| GCGGATTGTGGAGAAACTGG+TGG | 0.776601 | 5.1:+69163036 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAATCTTCTATAAAGACATG+AGG | - | chr5.1:69162763-69162782 | MS.gene99388:CDS | 25.0% |
| ! | AACATCGTTACATTATTTGA+TGG | + | chr5.1:69162822-69162841 | None:intergenic | 25.0% |
| ! | ATGTTCAAGATGATGTTAAA+AGG | - | chr5.1:69162837-69162856 | MS.gene99388:CDS | 25.0% |
| ! | CATGTCTTTATAGAAGATTT+CGG | + | chr5.1:69162763-69162782 | None:intergenic | 25.0% |
| AATCTTGTCATTAGGGTTAT+CGG | + | chr5.1:69162712-69162731 | None:intergenic | 30.0% | |
| CAAATCGCAATCAACTTTAA+CGG | + | chr5.1:69162997-69163016 | None:intergenic | 30.0% | |
| TGATTCCAATCTTGTCATTA+GGG | + | chr5.1:69162719-69162738 | None:intergenic | 30.0% | |
| TTATGTCATCAAGATTCCTA+AGG | - | chr5.1:69162404-69162423 | MS.gene99388:CDS | 30.0% | |
| ! | TAAAGTTGATTGCGATTTGA+TGG | - | chr5.1:69162998-69163017 | MS.gene99388:CDS | 30.0% |
| !! | TAAGAGTTGTACTTTTAGAG+TGG | - | chr5.1:69163055-69163074 | MS.gene99388:CDS | 30.0% |
| !! | TTTGATGGTTGATAAAACGA+TGG | + | chr5.1:69162807-69162826 | None:intergenic | 30.0% |
| AAAGACATGAGGCTATGTAA+TGG | - | chr5.1:69162774-69162793 | MS.gene99388:CDS | 35.0% | |
| ATCGAAAACATCACCATTAG+AGG | - | chr5.1:69162621-69162640 | MS.gene99388:CDS | 35.0% | |
| CTGATTCCAATCTTGTCATT+AGG | + | chr5.1:69162720-69162739 | None:intergenic | 35.0% | |
| GAAAACAAGGTAGAAAATGC+CGG | + | chr5.1:69162577-69162596 | None:intergenic | 35.0% | |
| GATAACCCTAATGACAAGAT+TGG | - | chr5.1:69162711-69162730 | MS.gene99388:CDS | 35.0% | |
| GGTAATCTTCCATGTCTTAA+CGG | + | chr5.1:69162976-69162995 | None:intergenic | 35.0% | |
| ! | ATGTTTTCGATGGTGTAGTT+TGG | + | chr5.1:69162612-69162631 | None:intergenic | 35.0% |
| ! | TAGTGAAGATCAAAAAGCGT+TGG | - | chr5.1:69162878-69162897 | MS.gene99388:CDS | 35.0% |
| !! | GGTTATGTTGATTCCTCTAA+TGG | + | chr5.1:69162637-69162656 | None:intergenic | 35.0% |
| !! | TAAACAGGAAGTGTCGTTAA+TGG | - | chr5.1:69162914-69162933 | MS.gene99388:CDS | 35.0% |
| !! | TCTAATGGTGATGTTTTCGA+TGG | + | chr5.1:69162622-69162641 | None:intergenic | 35.0% |
| !!! | GTACTTTTAGAGTGGATCTT+TGG | - | chr5.1:69163063-69163082 | MS.gene99388:CDS | 35.0% |
| TGCGTGTGTATTGTTCGTAA+CGG | + | chr5.1:69162467-69162486 | None:intergenic | 40.0% | |
| TTATTCCGATGAACCAGCAA+AGG | + | chr5.1:69162521-69162540 | None:intergenic | 40.0% | |
| TTTACAGTGACGTCAAACTC+CGG | + | chr5.1:69162687-69162706 | None:intergenic | 40.0% | |
| ! | AATGGTTAAATTGAGAGCGC+CGG | - | chr5.1:69162932-69162951 | MS.gene99388:CDS | 40.0% |
| !! | AGATCAAAAAGCGTTGGTGA+AGG | - | chr5.1:69162884-69162903 | MS.gene99388:CDS | 40.0% |
| !!! | ATGGTGTAGTTTGGTGCTTT+TGG | + | chr5.1:69162603-69162622 | None:intergenic | 40.0% |
| !!! | GACCCCACTTTTATTTTCAC+CGG | + | chr5.1:69162954-69162973 | None:intergenic | 40.0% |
| !!! | TGGTGTAGTTTGGTGCTTTT+GGG | + | chr5.1:69162602-69162621 | None:intergenic | 40.0% |
| AACAAGGTAGAAAATGCCGG+CGG | + | chr5.1:69162574-69162593 | None:intergenic | 45.0% | |
| CGCCGGTGAAAATAAAAGTG+GGG | - | chr5.1:69162949-69162968 | MS.gene99388:CDS | 45.0% | |
| GGTGGAACAGGCTTATCTAA+CGG | + | chr5.1:69162375-69162394 | None:intergenic | 45.0% | |
| TTCATCCTCATCATGCTCCT+TGG | - | chr5.1:69162543-69162562 | MS.gene99388:CDS | 45.0% | |
| ! | GCGCCGGTGAAAATAAAAGT+GGG | - | chr5.1:69162948-69162967 | MS.gene99388:CDS | 45.0% |
| ! | GGCTTATCTAACGGTGGTTT+TGG | + | chr5.1:69162366-69162385 | None:intergenic | 45.0% |
| ! | TTGATGACATAAGTTCCCGC+TGG | + | chr5.1:69162396-69162415 | None:intergenic | 45.0% |
| !! | AGCGCCGGTGAAAATAAAAG+TGG | - | chr5.1:69162947-69162966 | MS.gene99388:CDS | 45.0% |
| !!! | TGTAGTTTGGTGCTTTTGGG+CGG | + | chr5.1:69162599-69162618 | None:intergenic | 45.0% |
| AAGTGGGGTCCGTTAAGACA+TGG | - | chr5.1:69162964-69162983 | MS.gene99388:CDS | 50.0% | |
| ACACACGCAAGAAACACCGT+CGG | - | chr5.1:69162478-69162497 | MS.gene99388:CDS | 50.0% | |
| AGATAAGCCTGTTCCACCAG+CGG | - | chr5.1:69162377-69162396 | MS.gene99388:CDS | 50.0% | |
| AGCAAAGGCAGCAGCAATGA+CGG | + | chr5.1:69162506-69162525 | None:intergenic | 50.0% | |
| ATGACATAAGTTCCCGCTGG+TGG | + | chr5.1:69162393-69162412 | None:intergenic | 50.0% | |
| GGAACAGGCTTATCTAACGG+TGG | + | chr5.1:69162372-69162391 | None:intergenic | 50.0% | |
| ! | AGAAACTGGTGGTGAGTCAC+GGG | + | chr5.1:69162322-69162341 | None:intergenic | 50.0% |
| ! | CAATGCCAAGGAGCATGATG+AGG | + | chr5.1:69162551-69162570 | None:intergenic | 50.0% |
| ! | GAGAAACTGGTGGTGAGTCA+CGG | + | chr5.1:69162323-69162342 | None:intergenic | 50.0% |
| ! | GGTGAAGGCGCAAACTAAAC+AGG | - | chr5.1:69162899-69162918 | MS.gene99388:CDS | 50.0% |
| ! | GTGCTTTTGGGCGGAAAACA+AGG | + | chr5.1:69162590-69162609 | None:intergenic | 50.0% |
| !! | ACTCGGTGGACTATGTCCTT+AGG | + | chr5.1:69162423-69162442 | None:intergenic | 50.0% |
| !! | TGCTGCCTTTGCTGGTTCAT+CGG | - | chr5.1:69162513-69162532 | MS.gene99388:CDS | 50.0% |
| !!! | CGGTGGTTTTGGAGCAACAA+CGG | + | chr5.1:69162355-69162374 | None:intergenic | 50.0% |
| !!! | TGGTTTTGGAGCAACAACGG+CGG | + | chr5.1:69162352-69162371 | None:intergenic | 50.0% |
| AGCAGCAATGACGGTTCCGA+CGG | + | chr5.1:69162497-69162516 | None:intergenic | 55.0% | |
| GAGATCCCTGTCGTGGACAA+CGG | + | chr5.1:69162663-69162682 | None:intergenic | 55.0% | |
| GATAAGCCTGTTCCACCAGC+GGG | - | chr5.1:69162378-69162397 | MS.gene99388:CDS | 55.0% | |
| GTCATTGCTGCTGCCTTTGC+TGG | - | chr5.1:69162505-69162524 | MS.gene99388:CDS | 55.0% | |
| TAAGTTCCCGCTGGTGGAAC+AGG | + | chr5.1:69162387-69162406 | None:intergenic | 55.0% | |
| ! | AAACTGGTGGTGAGTCACGG+GGG | + | chr5.1:69162320-69162339 | None:intergenic | 55.0% |
| ! | GAAACTGGTGGTGAGTCACG+GGG | + | chr5.1:69162321-69162340 | None:intergenic | 55.0% |
| ! | GCGGATTGTGGAGAAACTGG+TGG | + | chr5.1:69162333-69162352 | None:intergenic | 55.0% |
| !! | ACGGCGGATTGTGGAGAAAC+TGG | + | chr5.1:69162336-69162355 | None:intergenic | 55.0% |
| AAATGCCGGCGGCAATGCCA+AGG | + | chr5.1:69162563-69162582 | None:intergenic | 60.0% | |
| ACCTCACCGTTGTCCACGAC+AGG | - | chr5.1:69162654-69162673 | MS.gene99388:CDS | 60.0% | |
| ATGCTCCTTGGCATTGCCGC+CGG | - | chr5.1:69162555-69162574 | MS.gene99388:CDS | 60.0% | |
| CCTCACCGTTGTCCACGACA+GGG | - | chr5.1:69162655-69162674 | MS.gene99388:CDS | 60.0% | |
| GTCCACGACAGGGATCTCAC+CGG | - | chr5.1:69162665-69162684 | MS.gene99388:CDS | 60.0% | |
| GTGAGTCACGGGGGTGAACA+CGG | + | chr5.1:69162311-69162330 | None:intergenic | 60.0% | |
| TCGTAACGGCGAGCGTTCTC+CGG | + | chr5.1:69162453-69162472 | None:intergenic | 60.0% | |
| !! | GGAGCAACAACGGCGGATTG+TGG | + | chr5.1:69162345-69162364 | None:intergenic | 60.0% |
| AGTCCACCGAGTCCCTCCAC+CGG | - | chr5.1:69162431-69162450 | MS.gene99388:CDS | 65.0% | |
| CCCTGTCGTGGACAACGGTG+AGG | + | chr5.1:69162658-69162677 | None:intergenic | 65.0% | |
| CGTTCTCCGGTGGAGGGACT+CGG | + | chr5.1:69162440-69162459 | None:intergenic | 65.0% | |
| CTCCGGTGAGATCCCTGTCG+TGG | + | chr5.1:69162670-69162689 | None:intergenic | 65.0% | |
| TAACGGCGAGCGTTCTCCGG+TGG | + | chr5.1:69162450-69162469 | None:intergenic | 65.0% | |
| GGCGAGCGTTCTCCGGTGGA+GGG | + | chr5.1:69162446-69162465 | None:intergenic | 70.0% | |
| TCTCCGGTGGAGGGACTCGG+TGG | + | chr5.1:69162437-69162456 | None:intergenic | 70.0% | |
| CGGCGAGCGTTCTCCGGTGG+AGG | + | chr5.1:69162447-69162466 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 69162300 | 69163088 | 69162300 | ID=MS.gene99388 |
| chr5.1 | mRNA | 69162300 | 69163088 | 69162300 | ID=MS.gene99388.t1;Parent=MS.gene99388 |
| chr5.1 | exon | 69162300 | 69163088 | 69162300 | ID=MS.gene99388.t1.exon1;Parent=MS.gene99388.t1 |
| chr5.1 | CDS | 69162300 | 69163088 | 69162300 | ID=cds.MS.gene99388.t1;Parent=MS.gene99388.t1 |
| Gene Sequence |
| Protein sequence |
