Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99600.t1 | XP_003614705.1 | 98.5 | 927 | 12 | 2 | 1 | 926 | 1 | 926 | 0.00E+00 | 1893.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99600.t1 | Q9S7Y7 | 74.3 | 922 | 224 | 5 | 6 | 926 | 4 | 913 | 0.0e+00 | 1449.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99600.t1 | G7JXA7 | 98.5 | 927 | 12 | 2 | 1 | 926 | 1 | 926 | 0.0e+00 | 1893.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053789 | MS.gene99600 | 0.823535 | 1.31E-53 | -1.69E-46 |
| MS.gene053973 | MS.gene99600 | 0.811505 | 6.77E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene00027 | MS.gene99600 | PPI |
| MS.gene02726 | MS.gene99600 | PPI |
| MS.gene027805 | MS.gene99600 | PPI |
| MS.gene047493 | MS.gene99600 | PPI |
| MS.gene069133 | MS.gene99600 | PPI |
| MS.gene00023 | MS.gene99600 | PPI |
| MS.gene047991 | MS.gene99600 | PPI |
| MS.gene068597 | MS.gene99600 | PPI |
| MS.gene070893 | MS.gene99600 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99600.t1 | MTR_5g057990 | 98.490 | 927 | 12 | 2 | 1 | 926 | 1 | 926 | 0.0 | 1885 |
| MS.gene99600.t1 | MTR_1g110980 | 80.488 | 902 | 170 | 3 | 26 | 926 | 28 | 924 | 0.0 | 1546 |
| MS.gene99600.t1 | MTR_1g111000 | 75.932 | 939 | 211 | 5 | 1 | 926 | 1 | 937 | 0.0 | 1492 |
| MS.gene99600.t1 | MTR_3g096870 | 29.444 | 720 | 383 | 20 | 188 | 859 | 217 | 859 | 8.63e-83 | 286 |
| MS.gene99600.t1 | MTR_5g026610 | 30.233 | 645 | 376 | 15 | 178 | 816 | 81 | 657 | 4.72e-76 | 267 |
| MS.gene99600.t1 | MTR_5g026610 | 30.354 | 649 | 370 | 18 | 178 | 816 | 144 | 720 | 1.01e-75 | 268 |
| MS.gene99600.t1 | MTR_5g026610 | 30.388 | 645 | 375 | 16 | 178 | 816 | 81 | 657 | 1.46e-75 | 268 |
| MS.gene99600.t1 | MTR_5g026610 | 30.354 | 649 | 370 | 18 | 178 | 816 | 144 | 720 | 2.16e-75 | 268 |
| MS.gene99600.t1 | MTR_5g026610 | 30.354 | 649 | 370 | 18 | 178 | 816 | 184 | 760 | 4.28e-75 | 267 |
| MS.gene99600.t1 | MTR_5g026610 | 31.743 | 482 | 263 | 12 | 339 | 816 | 2 | 421 | 1.38e-59 | 218 |
| MS.gene99600.t1 | MTR_6g014900 | 64.706 | 51 | 18 | 0 | 639 | 689 | 82 | 132 | 1.74e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99600.t1 | AT1G68560 | 75.588 | 893 | 207 | 4 | 35 | 926 | 31 | 913 | 0.0 | 1444 |
| MS.gene99600.t1 | AT3G45940 | 64.744 | 919 | 252 | 9 | 11 | 926 | 4 | 853 | 0.0 | 1226 |
| MS.gene99600.t1 | AT5G11720 | 45.464 | 926 | 455 | 15 | 15 | 925 | 11 | 901 | 0.0 | 813 |
| MS.gene99600.t1 | AT5G63840 | 29.506 | 749 | 419 | 18 | 148 | 859 | 189 | 865 | 6.29e-87 | 298 |
| MS.gene99600.t1 | AT5G63840 | 29.506 | 749 | 419 | 18 | 148 | 859 | 216 | 892 | 9.37e-87 | 298 |
| MS.gene99600.t1 | AT3G23640 | 34.347 | 559 | 277 | 17 | 271 | 818 | 238 | 717 | 1.91e-84 | 294 |
| MS.gene99600.t1 | AT3G23640 | 34.347 | 559 | 277 | 17 | 271 | 818 | 169 | 648 | 2.34e-84 | 292 |
| MS.gene99600.t1 | AT3G23640 | 34.347 | 559 | 277 | 17 | 271 | 818 | 169 | 648 | 2.34e-84 | 292 |
Find 243 sgRNAs with CRISPR-Local
Find 388 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATGCGCTTCGTAGTTTA+AGG | 0.142427 | 5.4:-45448254 | None:intergenic |
| ACGATAGCCTTGACCAATTT+TGG | 0.159411 | 5.4:-45444006 | None:intergenic |
| AATCTTAATGCTGATTTATA+TGG | 0.165923 | 5.4:+45444845 | MS.gene99600:CDS |
| CTTTGCCATGACATGGAAAA+TGG | 0.172380 | 5.4:+45449005 | MS.gene99600:CDS |
| CCGTTTCCAAGCTTCATTTC+TGG | 0.183467 | 5.4:-45448679 | None:intergenic |
| AAGGAACATGGGAGAATTTA+AGG | 0.193751 | 5.4:+45447978 | MS.gene99600:CDS |
| ACCCCTGATGGTGCCCTTAT+TGG | 0.202977 | 5.4:+45444047 | MS.gene99600:CDS |
| TTTGCATGATCTCTTGAAAA+TGG | 0.216652 | 5.4:-45448130 | None:intergenic |
| TCTTTGACTTATAAGGTTAT+TGG | 0.219457 | 5.4:+45444974 | MS.gene99600:CDS |
| CCTAAAGATGCATCTTTATA+TGG | 0.220928 | 5.4:+45444737 | MS.gene99600:CDS |
| AATATCAGGGCCATAGATTT+TGG | 0.228691 | 5.4:-45444093 | None:intergenic |
| TTCTTGGCTCAAGTGTGGCC+TGG | 0.233420 | 5.4:+45447476 | MS.gene99600:CDS |
| ATGTTGAATTTCGGTATATT+TGG | 0.235345 | 5.4:+45448016 | MS.gene99600:CDS |
| AGGAACTTCTTTGACTTATA+AGG | 0.239990 | 5.4:+45444967 | MS.gene99600:CDS |
| TCAGTTGTATATAAAGTATA+AGG | 0.253421 | 5.4:-45444809 | None:intergenic |
| GCTATGCCTTATTGGGCTTT+TGG | 0.262409 | 5.4:+45445082 | MS.gene99600:CDS |
| GACCTGCTGCTATGCCTTAT+TGG | 0.263069 | 5.4:+45445074 | MS.gene99600:CDS |
| TTTGGACATATCGTGTTCTT+TGG | 0.265426 | 5.4:-45447647 | None:intergenic |
| TCCTCAAAGGCCACCAAAAT+TGG | 0.270256 | 5.4:+45443993 | MS.gene99600:CDS |
| ACCTGCTGCTATGCCTTATT+GGG | 0.284459 | 5.4:+45445075 | MS.gene99600:CDS |
| TCTTGGCTCAAGTGTGGCCT+GGG | 0.284572 | 5.4:+45447477 | MS.gene99600:CDS |
| TTCAAGAAGTTTAGAAGCTT+TGG | 0.286291 | 5.4:-45447326 | None:intergenic |
| CTAGAAATGCTTTAGGTATA+AGG | 0.287015 | 5.4:+45448206 | MS.gene99600:CDS |
| TTGAAAACAAGTGAACTAAA+TGG | 0.291574 | 5.4:-45444683 | None:intergenic |
| AATGGTGGTGGTTGTTCTCT+TGG | 0.296023 | 5.4:-45444500 | None:intergenic |
| AGATGCATCTTTATATGGTT+TGG | 0.300835 | 5.4:+45444742 | MS.gene99600:CDS |
| AACCTAAGAAGGGGAATATC+AGG | 0.302044 | 5.4:-45444107 | None:intergenic |
| TTAGATGGAAAGCCACTAAT+TGG | 0.303561 | 5.4:+45448865 | MS.gene99600:CDS |
| ATTGGTAAAGCTCTTGTCTT+GGG | 0.307685 | 5.4:-45448162 | None:intergenic |
| GTATGAAGGTGAACCTTTCT+TGG | 0.309484 | 5.4:+45447460 | MS.gene99600:CDS |
| TTTCCTAAGGTTTGTGGTAA+TGG | 0.313549 | 5.4:-45444518 | None:intergenic |
| CCAGAAGCATTTATCTTGTA+AGG | 0.319754 | 5.4:-45447740 | None:intergenic |
| TGGATCTCATCCTATGTATA+TGG | 0.322901 | 5.4:+45444865 | MS.gene99600:CDS |
| CCTTACAAGATAAATGCTTC+TGG | 0.322935 | 5.4:+45447740 | MS.gene99600:CDS |
| GTGGTTGTTCTCTTGGGATA+AGG | 0.326394 | 5.4:-45444493 | None:intergenic |
| GCAACTCACAAGGGTCTTCT+TGG | 0.327161 | 5.4:+45447869 | MS.gene99600:CDS |
| ATTGAAGTCTCAGAGTATTC+AGG | 0.331496 | 5.4:+45444557 | MS.gene99600:CDS |
| ATTGATTCCATTTCTGTGTT+GGG | 0.332469 | 5.4:+45448805 | MS.gene99600:CDS |
| ACCCACCAAGATACCGTCTT+TGG | 0.334922 | 5.4:-45447527 | None:intergenic |
| GATGCATCTTTATATGGTTT+GGG | 0.338606 | 5.4:+45444743 | MS.gene99600:CDS |
| GCCCTGATATTCCCCTTCTT+AGG | 0.339169 | 5.4:+45444105 | MS.gene99600:CDS |
| TTTGGACGAGGGTAGTTCTT+TGG | 0.339509 | 5.4:-45447308 | None:intergenic |
| AACAAGGAGGTGTGAAAGTT+TGG | 0.339571 | 5.4:+45448737 | MS.gene99600:CDS |
| CACGCTCGTTGTTACATTCC+CGG | 0.340620 | 5.4:+45448600 | MS.gene99600:CDS |
| CATCCTGGTCCTGTTCCATT+TGG | 0.345366 | 5.4:-45447665 | None:intergenic |
| CCATATAAAGATGCATCTTT+AGG | 0.345622 | 5.4:-45444737 | None:intergenic |
| ATTTCTGTGTTGGGATTAGA+TGG | 0.346671 | 5.4:+45448814 | MS.gene99600:CDS |
| GATCAGTATACTACTTTGAT+TGG | 0.350998 | 5.4:+45445049 | MS.gene99600:CDS |
| ATATCCACAATGTTGAATTT+CGG | 0.352326 | 5.4:+45448007 | MS.gene99600:CDS |
| CTGTTATGTGTACTCTTAAT+CGG | 0.353456 | 5.4:-45444436 | None:intergenic |
| AGGATCGTCCCATCTTGTTT+TGG | 0.363147 | 5.4:-45447717 | None:intergenic |
| GTAGACCGCGACAAAATAAA+AGG | 0.365335 | 5.4:-45447908 | None:intergenic |
| TACTTCTGAACATGTGCATT+TGG | 0.366445 | 5.4:+45448909 | MS.gene99600:CDS |
| GTCTTTGGATTGAGAAAATC+AGG | 0.367465 | 5.4:-45447512 | None:intergenic |
| GAATACTCTGAGACTTCAAT+AGG | 0.367685 | 5.4:-45444554 | None:intergenic |
| CGGTCTACTTATGTTGGTTC+GGG | 0.368222 | 5.4:+45447923 | MS.gene99600:CDS |
| GAAGCCTCAAATTTCTGTTC+TGG | 0.368564 | 5.4:+45447611 | MS.gene99600:CDS |
| TATGATGCTCATAGTATCTA+TGG | 0.368905 | 5.4:+45447830 | MS.gene99600:CDS |
| CCTTTGGTATACACCATAAC+TGG | 0.369803 | 5.4:-45447411 | None:intergenic |
| TTGTTGAAATCTCAAGATAT+TGG | 0.372770 | 5.4:-45444709 | None:intergenic |
| GTGGCTTCACTTGAGTTAGA+TGG | 0.373357 | 5.4:+45448850 | MS.gene99600:CDS |
| TAAGTTGAAGGAGACCAATA+AGG | 0.376052 | 5.4:-45444061 | None:intergenic |
| CTGAAGAACTATGCAATAGA+TGG | 0.376212 | 5.4:+45448086 | MS.gene99600:CDS |
| ATCATACCAAAAGCCCAATA+AGG | 0.377929 | 5.4:-45445088 | None:intergenic |
| GATATCCCCATCTGCATTGA+TGG | 0.387246 | 5.4:-45447169 | None:intergenic |
| GCGGTCTACTTATGTTGGTT+CGG | 0.391522 | 5.4:+45447922 | MS.gene99600:CDS |
| GTCATTATTGACCCTGGAAT+TGG | 0.397156 | 5.4:+45447380 | MS.gene99600:CDS |
| ATGGTGGTGGTTGTTCTCTT+GGG | 0.398455 | 5.4:-45444499 | None:intergenic |
| ACACTTGACAAGCCAATTAG+TGG | 0.400133 | 5.4:-45448877 | None:intergenic |
| ATCAATCCACCTTGCTGCAT+TGG | 0.404465 | 5.4:-45448550 | None:intergenic |
| AACTACGAAGCGCATGTTAG+TGG | 0.404979 | 5.4:+45448259 | MS.gene99600:CDS |
| TAGTTTAAGGTGTAAAGATA+TGG | 0.405653 | 5.4:-45448241 | None:intergenic |
| AGTTGAAGTTGAGTTGAAAA+GGG | 0.409807 | 5.4:-45444651 | None:intergenic |
| AAGTTGAAGTTGAGTTGAAA+AGG | 0.411882 | 5.4:-45444652 | None:intergenic |
| AAGGGTCTTCTTGGACTTGA+AGG | 0.413515 | 5.4:+45447878 | MS.gene99600:CDS |
| AAATTCCGCTCGATGTGATC+TGG | 0.413564 | 5.4:+45447240 | MS.gene99600:CDS |
| CAATCAGCTAGAAATGCTTT+AGG | 0.418336 | 5.4:+45448199 | MS.gene99600:CDS |
| TCAATCCAAAGACGGTATCT+TGG | 0.419549 | 5.4:+45447522 | MS.gene99600:CDS |
| AGGGTAGTTCTTTGGATTCA+AGG | 0.420050 | 5.4:-45447300 | None:intergenic |
| TGGAACTTTCCTAAGGTTTG+TGG | 0.421087 | 5.4:-45444524 | None:intergenic |
| CATGAACTCGTACCTGTTGA+CGG | 0.426235 | 5.4:+45447569 | MS.gene99600:CDS |
| TCGTACCTGTTGACGGCCTA+TGG | 0.426914 | 5.4:+45447576 | MS.gene99600:CDS |
| CATAGTTCTTCAGTTGGTTG+TGG | 0.434783 | 5.4:-45448076 | None:intergenic |
| CAGATGCAAACAAGCAAAGA+TGG | 0.439003 | 5.4:+45444456 | MS.gene99600:CDS |
| ATCTAATCCCAACACAGAAA+TGG | 0.439538 | 5.4:-45448812 | None:intergenic |
| TATATGGATCTGAGAAATAA+TGG | 0.439740 | 5.4:+45444881 | MS.gene99600:CDS |
| TTCTTGGACTTGAAGGCAAA+AGG | 0.441950 | 5.4:+45447885 | MS.gene99600:CDS |
| TCTCTTGGGATAAGGTTGTA+TGG | 0.443474 | 5.4:-45444485 | None:intergenic |
| TTGACTTATAAGGTTATTGG+TGG | 0.444386 | 5.4:+45444977 | MS.gene99600:CDS |
| CTGGAGTTAACACCAATTCC+AGG | 0.446779 | 5.4:-45447392 | None:intergenic |
| TATTGATTCCATTTCTGTGT+TGG | 0.446974 | 5.4:+45448804 | MS.gene99600:CDS |
| GCAAGGTGGATTGATCTCTA+AGG | 0.447708 | 5.4:+45448558 | MS.gene99600:CDS |
| AGACCAATAAGGGCACCATC+AGG | 0.448219 | 5.4:-45444050 | None:intergenic |
| ACTCCAAGACACCGTTATAG+TGG | 0.450821 | 5.4:-45447808 | None:intergenic |
| TGAAAACAAGTGAACTAAAT+GGG | 0.454745 | 5.4:-45444682 | None:intergenic |
| ACCATCAGGGGTTTCTTCAA+TGG | 0.458833 | 5.4:-45444036 | None:intergenic |
| TTGCATGATCTCTTGAAAAT+GGG | 0.465416 | 5.4:-45448129 | None:intergenic |
| ACCAGGATGGATATGTTGCT+TGG | 0.465580 | 5.4:+45447679 | MS.gene99600:CDS |
| GAGGAAACAACGCTTTCACT+TGG | 0.466847 | 5.4:-45448405 | None:intergenic |
| CATCGTTGGCTAAACCCCTT+TGG | 0.466924 | 5.4:-45447427 | None:intergenic |
| GTTGGTACAGTTTACTCGAT+TGG | 0.473073 | 5.4:+45448434 | MS.gene99600:CDS |
| TCGTAACATTTGGTGTAAGA+TGG | 0.474224 | 5.4:-45448316 | None:intergenic |
| TTGTCGCGGTCTACTTATGT+TGG | 0.474500 | 5.4:+45447917 | MS.gene99600:CDS |
| CTGGAACGACGATGATCATA+TGG | 0.474710 | 5.4:+45447259 | MS.gene99600:CDS |
| CGTTGTTTCCTCCCGGTAGT+TGG | 0.476352 | 5.4:+45448416 | MS.gene99600:CDS |
| ACTCACACCATCACATCAAC+AGG | 0.478651 | 5.4:+45448457 | MS.gene99600:CDS |
| TCAATCCATAGGCCGTCAAC+AGG | 0.479710 | 5.4:-45447581 | None:intergenic |
| CGGTATATTTGGTGTTCCAA+TGG | 0.480390 | 5.4:+45448027 | MS.gene99600:CDS |
| CCATGTTCCTTGATTGTCAC+CGG | 0.482726 | 5.4:-45447966 | None:intergenic |
| TCAGGAAAGTTTACCGCCCC+AGG | 0.483976 | 5.4:-45447494 | None:intergenic |
| ACGATATGTCCAAATGGAAC+AGG | 0.485380 | 5.4:+45447656 | MS.gene99600:CDS |
| TATATTTGGTGTTCCAATGG+TGG | 0.488042 | 5.4:+45448030 | MS.gene99600:CDS |
| TTTACCAGAACAGAAATTTG+AGG | 0.488269 | 5.4:-45447615 | None:intergenic |
| TCTCCTTCTGATGCACCAGC+CGG | 0.490316 | 5.4:-45448619 | None:intergenic |
| ATTGGTGTTAACTCCAGTTA+TGG | 0.492063 | 5.4:+45447398 | MS.gene99600:CDS |
| CATTGGTAAAGCTCTTGTCT+TGG | 0.492147 | 5.4:-45448163 | None:intergenic |
| AATACTCTGAGACTTCAATA+GGG | 0.492896 | 5.4:-45444553 | None:intergenic |
| CTCGTTGTTACATTCCCGGC+TGG | 0.493742 | 5.4:+45448604 | MS.gene99600:CDS |
| CTATTGCATAGTTCTTCAGT+TGG | 0.495820 | 5.4:-45448082 | None:intergenic |
| TTTCTCAGATCCATATACAT+AGG | 0.497998 | 5.4:-45444875 | None:intergenic |
| CAGTTATGGTGTATACCAAA+GGG | 0.499204 | 5.4:+45447412 | MS.gene99600:CDS |
| CTTCAGATGAAAATAGAAGA+AGG | 0.500461 | 5.4:-45443962 | None:intergenic |
| GGTAAATTTGCTTTAGACAA+AGG | 0.501257 | 5.4:+45448775 | MS.gene99600:CDS |
| CATCAGAAGGAGATGCTAAA+GGG | 0.503388 | 5.4:+45448629 | MS.gene99600:CDS |
| AAGAAAAGTGGTCTTGCAAT+TGG | 0.503440 | 5.4:-45448286 | None:intergenic |
| CGTAACATTTGGTGTAAGAT+GGG | 0.503599 | 5.4:-45448315 | None:intergenic |
| ACTTAGCATAGAACCTAAGA+AGG | 0.505923 | 5.4:-45444118 | None:intergenic |
| ATACTTGATGAAAACATCGT+TGG | 0.508108 | 5.4:-45447441 | None:intergenic |
| AAGACAAGAGCTTTACCAAT+GGG | 0.512360 | 5.4:+45448165 | MS.gene99600:CDS |
| ATATTTGGTGTTCCAATGGT+GGG | 0.513486 | 5.4:+45448031 | MS.gene99600:CDS |
| GGCTCAAGTGTGGCCTGGGG+CGG | 0.516405 | 5.4:+45447481 | MS.gene99600:CDS |
| GAACTTCCAGAAATGAAGCT+TGG | 0.516701 | 5.4:+45448673 | MS.gene99600:CDS |
| CAGTTGTATATAAAGTATAA+GGG | 0.516738 | 5.4:-45444808 | None:intergenic |
| CTCCTTCTGATGCACCAGCC+GGG | 0.517533 | 5.4:-45448618 | None:intergenic |
| ACCAATAAGGGCACCATCAG+GGG | 0.519110 | 5.4:-45444048 | None:intergenic |
| CCAGAAATGAAGCTTGGAAA+CGG | 0.521555 | 5.4:+45448679 | MS.gene99600:CDS |
| CAGGATTCCATCAATGCAGA+TGG | 0.521721 | 5.4:+45447162 | MS.gene99600:intron |
| GTTATAGTGGGTTGCACTAG+TGG | 0.522996 | 5.4:-45447795 | None:intergenic |
| TTTGCCATGACATGGAAAAT+GGG | 0.523263 | 5.4:+45449006 | MS.gene99600:CDS |
| AACCTTTCTTGGCTCAAGTG+TGG | 0.523753 | 5.4:+45447471 | MS.gene99600:CDS |
| ATCCAAAGACGGTATCTTGG+TGG | 0.524403 | 5.4:+45447525 | MS.gene99600:CDS |
| CATTGGACCGGTGACAATCA+AGG | 0.524939 | 5.4:+45447959 | MS.gene99600:CDS |
| TCAGTCAAAAGAAAATCAAA+TGG | 0.527251 | 5.4:+45444623 | MS.gene99600:CDS |
| GCCCAATAAGGCATAGCAGC+AGG | 0.529330 | 5.4:-45445076 | None:intergenic |
| AAGGTTTGTGGTAATGGTGG+TGG | 0.529787 | 5.4:-45444512 | None:intergenic |
| CCACCATTACCACAAACCTT+AGG | 0.531410 | 5.4:+45444515 | MS.gene99600:CDS |
| AAGTTGAAGGAGACCAATAA+GGG | 0.534621 | 5.4:-45444060 | None:intergenic |
| GCATCAGAAGGAGATGCTAA+AGG | 0.534788 | 5.4:+45448628 | MS.gene99600:CDS |
| TGTCCAAATGGAACAGGACC+AGG | 0.534970 | 5.4:+45447662 | MS.gene99600:CDS |
| TACATTGTCATTATTGACCC+TGG | 0.538902 | 5.4:+45447374 | MS.gene99600:CDS |
| AAGAACACGATATGTCCAAA+TGG | 0.540149 | 5.4:+45447650 | MS.gene99600:CDS |
| GTTGTTGAATAGTAATGGAA+TGG | 0.541632 | 5.4:+45444931 | MS.gene99600:CDS |
| AAATATGCTGCACATTGGAC+CGG | 0.543658 | 5.4:+45447947 | MS.gene99600:CDS |
| TCCAAGCAACATATCCATCC+TGG | 0.543677 | 5.4:-45447680 | None:intergenic |
| GGCCACACTTGAGCCAAGAA+AGG | 0.545802 | 5.4:-45447473 | None:intergenic |
| AGATGGAAGTGTTGGAGCAG+TGG | 0.546659 | 5.4:+45448831 | MS.gene99600:CDS |
| GTGAAAGCGTTGTTTCCTCC+CGG | 0.549168 | 5.4:+45448409 | MS.gene99600:CDS |
| ATCAGTTGTTGAAGATGTTG+TGG | 0.549536 | 5.4:+45447199 | MS.gene99600:CDS |
| AAGACCCTTGTGAGTTGCAA+CGG | 0.550669 | 5.4:-45447864 | None:intergenic |
| GATGGGAAAGTGAAGAAAAG+TGG | 0.551252 | 5.4:-45448298 | None:intergenic |
| GAGTAAACTGTACCAACTAC+CGG | 0.552239 | 5.4:-45448428 | None:intergenic |
| TGGACCAACTCCTTTGAATG+TGG | 0.552956 | 5.4:+45445024 | MS.gene99600:CDS |
| AGAACATCACCAAAACAAGA+TGG | 0.554704 | 5.4:+45447708 | MS.gene99600:CDS |
| AATGTAACAACGAGCGTGAA+GGG | 0.555217 | 5.4:-45448595 | None:intergenic |
| TTCAGATGAAAATAGAAGAA+GGG | 0.555350 | 5.4:-45443961 | None:intergenic |
| ACTAGTGCAACCCACTATAA+CGG | 0.556439 | 5.4:+45447797 | MS.gene99600:CDS |
| GACCAATAAGGGCACCATCA+GGG | 0.558124 | 5.4:-45444049 | None:intergenic |
| CCTAAGGTTTGTGGTAATGG+TGG | 0.558277 | 5.4:-45444515 | None:intergenic |
| TGCACATTCACCACATGAAG+AGG | 0.558516 | 5.4:-45448505 | None:intergenic |
| CCGGTGACAATCAAGGAACA+TGG | 0.558617 | 5.4:+45447966 | MS.gene99600:CDS |
| GCAATCCGTTGCAACTCACA+AGG | 0.561861 | 5.4:+45447859 | MS.gene99600:CDS |
| AAGCAGTCTCATGATATCTC+CGG | 0.562483 | 5.4:+45448363 | MS.gene99600:CDS |
| TACTGATCAACCACATTCAA+AGG | 0.563536 | 5.4:-45445034 | None:intergenic |
| AGATGCAAACAAGCAAAGAT+GGG | 0.564971 | 5.4:+45444457 | MS.gene99600:CDS |
| TCTGGAATACAAGCTCCAAT+CGG | 0.565528 | 5.4:+45447758 | MS.gene99600:CDS |
| TTCCCGGCTGGTGCATCAGA+AGG | 0.565712 | 5.4:+45448616 | MS.gene99600:CDS |
| TCAACCACATTCAAAGGAGT+TGG | 0.566294 | 5.4:-45445028 | None:intergenic |
| TGCAATAGATGGATTGAAGT+TGG | 0.569941 | 5.4:+45448097 | MS.gene99600:CDS |
| CATATGTCAGAACCCACCAT+TGG | 0.570826 | 5.4:-45448043 | None:intergenic |
| TTGGGATTAGATGGAAGTGT+TGG | 0.571364 | 5.4:+45448823 | MS.gene99600:CDS |
| AAGTTTAGAAGCTTTGGACG+AGG | 0.575396 | 5.4:-45447320 | None:intergenic |
| AGTGCTGACATCGTAACATT+TGG | 0.575683 | 5.4:-45448326 | None:intergenic |
| AACAACGAGCGTGAAGGGTG+TGG | 0.579976 | 5.4:-45448590 | None:intergenic |
| CTTCGTTCATGTCAATCCAT+AGG | 0.580153 | 5.4:-45447592 | None:intergenic |
| CCAGTTATGGTGTATACCAA+AGG | 0.580821 | 5.4:+45447411 | MS.gene99600:CDS |
| AGGATTCCATCAATGCAGAT+GGG | 0.583052 | 5.4:+45447163 | MS.gene99600:intron |
| AACCCACTATAACGGTGTCT+TGG | 0.585133 | 5.4:+45447805 | MS.gene99600:CDS |
| CGGGCAAATATGCTGCACAT+TGG | 0.585282 | 5.4:+45447942 | MS.gene99600:CDS |
| TTGGTAAAGCTCTTGTCTTG+GGG | 0.587218 | 5.4:-45448161 | None:intergenic |
| CTTGGCTCAAGTGTGGCCTG+GGG | 0.588583 | 5.4:+45447478 | MS.gene99600:CDS |
| GAATGTAACAACGAGCGTGA+AGG | 0.590971 | 5.4:-45448596 | None:intergenic |
| CTTAGCATAGAACCTAAGAA+GGG | 0.592875 | 5.4:-45444117 | None:intergenic |
| AGGAAACAACGCTTTCACTT+GGG | 0.594189 | 5.4:-45448404 | None:intergenic |
| TATAAAGTATAAGGGTCACT+TGG | 0.594372 | 5.4:-45444800 | None:intergenic |
| ATATCTCCGGTGCTTGAACA+AGG | 0.594465 | 5.4:+45448376 | MS.gene99600:CDS |
| TGAAGCTACTTCTTCCTCAA+AGG | 0.596640 | 5.4:+45443980 | MS.gene99600:CDS |
| AGTTTAGAAGCTTTGGACGA+GGG | 0.596956 | 5.4:-45447319 | None:intergenic |
| TTGAACAAGATACACAGCAT+TGG | 0.600111 | 5.4:+45447344 | MS.gene99600:CDS |
| CATTTGGAAGGTGAAGGAAA+TGG | 0.600808 | 5.4:+45448925 | MS.gene99600:CDS |
| TCCAAAGACGGTATCTTGGT+GGG | 0.601129 | 5.4:+45447526 | MS.gene99600:CDS |
| TCTGAACATGTGCATTTGGA+AGG | 0.603305 | 5.4:+45448913 | MS.gene99600:CDS |
| GAACATCACCAAAACAAGAT+GGG | 0.603407 | 5.4:+45447709 | MS.gene99600:CDS |
| TGGAGTTAACACCAATTCCA+GGG | 0.605234 | 5.4:-45447391 | None:intergenic |
| ATTGAGCTACTGAATCCCAT+TGG | 0.607522 | 5.4:-45448180 | None:intergenic |
| ACCTAAGAAGGGGAATATCA+GGG | 0.608020 | 5.4:-45444106 | None:intergenic |
| GAAGCATTTATCTTGTAAGG+AGG | 0.609541 | 5.4:-45447737 | None:intergenic |
| TGTTGTGGATAGTTACAAGA+AGG | 0.610027 | 5.4:+45447214 | MS.gene99600:CDS |
| TATACCGAAATTCAACATTG+TGG | 0.611148 | 5.4:-45448011 | None:intergenic |
| CTATATGCTAGTGTCAAACA+AGG | 0.612842 | 5.4:+45448721 | MS.gene99600:CDS |
| CTCCAAGACACCGTTATAGT+GGG | 0.622378 | 5.4:-45447807 | None:intergenic |
| AAGGCCACCAAAATTGGTCA+AGG | 0.623219 | 5.4:+45443999 | MS.gene99600:CDS |
| CAAGACAAGAGCTTTACCAA+TGG | 0.624512 | 5.4:+45448164 | MS.gene99600:CDS |
| GGATATAATTTAATCCCATG+TGG | 0.629764 | 5.4:-45444779 | None:intergenic |
| AGTTTGGTCAGAAGTTCAAG+AGG | 0.635859 | 5.4:+45448753 | MS.gene99600:CDS |
| AGTTCCGCCTGTTGATGTGA+TGG | 0.636334 | 5.4:-45448464 | None:intergenic |
| ATGGATCTGAGAAATAATGG+TGG | 0.637533 | 5.4:+45444884 | MS.gene99600:CDS |
| AGTAAACTGTACCAACTACC+GGG | 0.640442 | 5.4:-45448427 | None:intergenic |
| ACTTGATGCACCTCTTCATG+TGG | 0.643407 | 5.4:+45448495 | MS.gene99600:CDS |
| CAATCCGTTGCAACTCACAA+GGG | 0.647962 | 5.4:+45447860 | MS.gene99600:CDS |
| AGAGGGTTGAGCATTCCTGT+TGG | 0.649091 | 5.4:+45448976 | MS.gene99600:CDS |
| ACTGTGATGGTAGCTTTGAG+AGG | 0.649524 | 5.4:+45448958 | MS.gene99600:CDS |
| GTTTGGTCAGAAGTTCAAGA+GGG | 0.655783 | 5.4:+45448754 | MS.gene99600:CDS |
| CGGTGACAATCAAGGAACAT+GGG | 0.656912 | 5.4:+45447967 | MS.gene99600:CDS |
| ACAATTCTTCCAATGCAGCA+AGG | 0.659787 | 5.4:+45448541 | MS.gene99600:CDS |
| CTGTGATGGTAGCTTTGAGA+GGG | 0.662336 | 5.4:+45448959 | MS.gene99600:CDS |
| TTAGCATAGAACCTAAGAAG+GGG | 0.663933 | 5.4:-45444116 | None:intergenic |
| ATGGTGGGTTCTGACATATG+TGG | 0.665102 | 5.4:+45448046 | MS.gene99600:CDS |
| ATTCTTCCAATGCAGCAAGG+TGG | 0.666214 | 5.4:+45448544 | MS.gene99600:CDS |
| AACGACGATGATCATATGGA+CGG | 0.669594 | 5.4:+45447263 | MS.gene99600:CDS |
| CAAATGGAACAGGACCAGGA+TGG | 0.669712 | 5.4:+45447666 | MS.gene99600:CDS |
| GGAGAGAATACACAACCACA+TGG | 0.676026 | 5.4:+45444764 | MS.gene99600:CDS |
| CATAGAAATGCTAAACTGTG+AGG | 0.677071 | 5.4:-45443918 | None:intergenic |
| AGTTATGGTGTATACCAAAG+GGG | 0.677346 | 5.4:+45447413 | MS.gene99600:CDS |
| TCGTTCCAGATCACATCGAG+CGG | 0.689132 | 5.4:-45447245 | None:intergenic |
| GTACGAGTTCATGAAAGCGA+CGG | 0.689303 | 5.4:-45447559 | None:intergenic |
| CACACCATCACATCAACAGG+CGG | 0.689960 | 5.4:+45448460 | MS.gene99600:CDS |
| GGATTCCATCAATGCAGATG+GGG | 0.692287 | 5.4:+45447164 | MS.gene99600:intron |
| TCCATTGAAGAAACCCCTGA+TGG | 0.700898 | 5.4:+45444035 | MS.gene99600:CDS |
| TGGTGAAAGTAAGACTGTGA+TGG | 0.700931 | 5.4:+45448945 | MS.gene99600:CDS |
| GAGAGAATACACAACCACAT+GGG | 0.709781 | 5.4:+45444765 | MS.gene99600:CDS |
| CATGTGCATTTGGAAGGTGA+AGG | 0.717327 | 5.4:+45448919 | MS.gene99600:CDS |
| TATGCTAGTGTCAAACAAGG+AGG | 0.726500 | 5.4:+45448724 | MS.gene99600:CDS |
| AAACTGTACCAACTACCGGG+AGG | 0.768178 | 5.4:-45448424 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTTGTATTAAATTAG+AGG | - | chr5.4:45445632-45445651 | None:intergenic | 10.0% |
| !! | TTTATAATTGAAAATATTGA+TGG | + | chr5.4:45446573-45446592 | MS.gene99600:intron | 10.0% |
| !!! | CAAATTTAAAATAAAAAAAG+TGG | - | chr5.4:45445608-45445627 | None:intergenic | 10.0% |
| !!! | TTTACTTAATTTATCTATTT+TGG | + | chr5.4:45446689-45446708 | MS.gene99600:intron | 10.0% |
| !! | AAAAACAAAAATATCAATCA+TGG | + | chr5.4:45445743-45445762 | MS.gene99600:intron | 15.0% |
| !! | AAATGTTAAAAATGATATCA+CGG | - | chr5.4:45445815-45445834 | None:intergenic | 15.0% |
| !! | AATCTAACAATTAACAAAAA+GGG | - | chr5.4:45445223-45445242 | None:intergenic | 15.0% |
| !! | ATTTACTATCATATATTACT+TGG | - | chr5.4:45445575-45445594 | None:intergenic | 15.0% |
| !! | ATTTGTCAATTATATGAAAA+AGG | + | chr5.4:45447025-45447044 | MS.gene99600:intron | 15.0% |
| !! | TAATCTAACAATTAACAAAA+AGG | - | chr5.4:45445224-45445243 | None:intergenic | 15.0% |
| !! | TTAATTGTTAGATTAAAAGA+AGG | + | chr5.4:45445229-45445248 | MS.gene99600:intron | 15.0% |
| !!! | GAAAAATATCTTCATATTTT+TGG | - | chr5.4:45445868-45445887 | None:intergenic | 15.0% |
| !!! | TTTGATTCTTTTATAAAGTT+TGG | + | chr5.4:45446053-45446072 | MS.gene99600:intron | 15.0% |
| !! | AAAAAATAACTATGAGTCAT+TGG | - | chr5.4:45446001-45446020 | None:intergenic | 20.0% |
| !! | AATGCTTAAATGATAAACTT+TGG | + | chr5.4:45445295-45445314 | MS.gene99600:intron | 20.0% |
| !! | CAGTTGTATATAAAGTATAA+GGG | - | chr5.4:45444811-45444830 | None:intergenic | 20.0% |
| !! | TCAGTTGTATATAAAGTATA+AGG | - | chr5.4:45444812-45444831 | None:intergenic | 20.0% |
| !! | TCCAAAAATAATTAATCAGT+TGG | + | chr5.4:45445675-45445694 | MS.gene99600:intron | 20.0% |
| !!! | AAGTTTGTTCTGTATTTTTT+AGG | + | chr5.4:45445775-45445794 | MS.gene99600:intron | 20.0% |
| !!! | AATCTTAATGCTGATTTATA+TGG | + | chr5.4:45444845-45444864 | MS.gene99600:CDS | 20.0% |
| !!! | AATGACTCATAGTTATTTTT+TGG | + | chr5.4:45446000-45446019 | MS.gene99600:intron | 20.0% |
| !!! | ACCAACTGATTAATTATTTT+TGG | - | chr5.4:45445679-45445698 | None:intergenic | 20.0% |
| !!! | ATGACTCATAGTTATTTTTT+GGG | + | chr5.4:45446001-45446020 | MS.gene99600:intron | 20.0% |
| !!! | TAGGTAATTGAATACTTTTT+TGG | + | chr5.4:45446165-45446184 | MS.gene99600:intron | 20.0% |
| !!! | TATTTTTTAGGATTCATGTA+AGG | + | chr5.4:45445787-45445806 | MS.gene99600:intron | 20.0% |
| !!! | TTTTCACATTATTATCAGTA+TGG | - | chr5.4:45444257-45444276 | None:intergenic | 20.0% |
| ! | AACCAAAAAACCAAAATCTA+TGG | + | chr5.4:45444083-45444102 | MS.gene99600:CDS | 25.0% |
| ! | AACTATAAAGCAATACATGT+GGG | + | chr5.4:45446309-45446328 | MS.gene99600:intron | 25.0% |
| ! | ACCTGTATATTAATGTATGA+TGG | + | chr5.4:45446024-45446043 | MS.gene99600:intron | 25.0% |
| ! | AGTAATAATGAAAAACGTGT+AGG | - | chr5.4:45446359-45446378 | None:intergenic | 25.0% |
| ! | ATAGGTACAATTAACAACAT+TGG | - | chr5.4:45444388-45444407 | None:intergenic | 25.0% |
| ! | ATAGTTGCAACATTTCAAAA+AGG | - | chr5.4:45446295-45446314 | None:intergenic | 25.0% |
| ! | ATATCCACAATGTTGAATTT+CGG | + | chr5.4:45448007-45448026 | MS.gene99600:CDS | 25.0% |
| ! | ATCATTTAAGCATTCACATA+TGG | - | chr5.4:45445289-45445308 | None:intergenic | 25.0% |
| ! | ATCATTTCACACACAAAATA+TGG | + | chr5.4:45446203-45446222 | MS.gene99600:intron | 25.0% |
| ! | ATGTTGAATTTCGGTATATT+TGG | + | chr5.4:45448016-45448035 | MS.gene99600:CDS | 25.0% |
| ! | CCTGTATATTAATGTATGAT+GGG | + | chr5.4:45446025-45446044 | MS.gene99600:intron | 25.0% |
| ! | CTAACTGATATTCTTACTAT+TGG | + | chr5.4:45447135-45447154 | MS.gene99600:intron | 25.0% |
| ! | CTGTATATTAATGTATGATG+GGG | + | chr5.4:45446026-45446045 | MS.gene99600:intron | 25.0% |
| ! | TAATGTAATCTAACATGTCA+TGG | + | chr5.4:45444289-45444308 | MS.gene99600:intron | 25.0% |
| ! | TATATGGATCTGAGAAATAA+TGG | + | chr5.4:45444881-45444900 | MS.gene99600:CDS | 25.0% |
| ! | TATATTACTTGGTCTAAACT+CGG | - | chr5.4:45445564-45445583 | None:intergenic | 25.0% |
| ! | TATTCTTACTATTGGTATAC+AGG | + | chr5.4:45447143-45447162 | MS.gene99600:intron | 25.0% |
| ! | TCAGTCAAAAGAAAATCAAA+TGG | + | chr5.4:45444623-45444642 | MS.gene99600:CDS | 25.0% |
| ! | TGAAAACAAGTGAACTAAAT+GGG | - | chr5.4:45444685-45444704 | None:intergenic | 25.0% |
| ! | TGTATATTAATGTATGATGG+GGG | + | chr5.4:45446027-45446046 | MS.gene99600:intron | 25.0% |
| ! | TTCAGATGAAAATAGAAGAA+GGG | - | chr5.4:45443964-45443983 | None:intergenic | 25.0% |
| ! | TTGAAAACAAGTGAACTAAA+TGG | - | chr5.4:45444686-45444705 | None:intergenic | 25.0% |
| ! | TTGTTGAAATCTCAAGATAT+TGG | - | chr5.4:45444712-45444731 | None:intergenic | 25.0% |
| !! | AACCTTTTTGCTAAAGTTTT+GGG | + | chr5.4:45446257-45446276 | MS.gene99600:intron | 25.0% |
| !! | AATTTTACCCTTAAACACAA+TGG | - | chr5.4:45446540-45446559 | None:intergenic | 25.0% |
| !! | TAGTTTAAGGTGTAAAGATA+TGG | - | chr5.4:45448244-45448263 | None:intergenic | 25.0% |
| !! | TCTTTGACTTATAAGGTTAT+TGG | + | chr5.4:45444974-45444993 | MS.gene99600:CDS | 25.0% |
| !! | TTATCATGAGAGAATTTTCA+TGG | + | chr5.4:45445953-45445972 | MS.gene99600:intron | 25.0% |
| !!! | GTTTTGTTGTTGAATAGTAA+TGG | + | chr5.4:45444926-45444945 | MS.gene99600:CDS | 25.0% |
| !!! | TTTGATTTTTACTTCTTCTC+TGG | + | chr5.4:45445004-45445023 | MS.gene99600:CDS | 25.0% |
| !!! | TTTTGACTGAGAAACTAAAT+GGG | - | chr5.4:45444613-45444632 | None:intergenic | 25.0% |
| ACACAATCATAGATCTGAAA+AGG | - | chr5.4:45445909-45445928 | None:intergenic | 30.0% | |
| AGATGCATCTTTATATGGTT+TGG | + | chr5.4:45444742-45444761 | MS.gene99600:CDS | 30.0% | |
| AGGATTTGCCTAATTTAATG+GGG | + | chr5.4:45446822-45446841 | MS.gene99600:intron | 30.0% | |
| ATACTTGATGAAAACATCGT+TGG | - | chr5.4:45447444-45447463 | None:intergenic | 30.0% | |
| ATATTACTTGGTCTAAACTC+GGG | - | chr5.4:45445563-45445582 | None:intergenic | 30.0% | |
| ATCAATCAATCACTAAGATG+TGG | + | chr5.4:45446513-45446532 | MS.gene99600:intron | 30.0% | |
| ATCATGCTTCAAATGCAAAA+AGG | + | chr5.4:45447071-45447090 | MS.gene99600:intron | 30.0% | |
| CAACTATAAAGCAATACATG+TGG | + | chr5.4:45446308-45446327 | MS.gene99600:intron | 30.0% | |
| CAGGATTTGCCTAATTTAAT+GGG | + | chr5.4:45446821-45446840 | MS.gene99600:intron | 30.0% | |
| CATACAATCAAGTAAACATG+AGG | + | chr5.4:45446856-45446875 | MS.gene99600:intron | 30.0% | |
| CCATATAAAGATGCATCTTT+AGG | - | chr5.4:45444740-45444759 | None:intergenic | 30.0% | |
| CCCATCATACATTAATATAC+AGG | - | chr5.4:45446028-45446047 | None:intergenic | 30.0% | |
| CCTAAAGATGCATCTTTATA+TGG | + | chr5.4:45444737-45444756 | MS.gene99600:CDS | 30.0% | |
| CTGTTATGTGTACTCTTAAT+CGG | - | chr5.4:45444439-45444458 | None:intergenic | 30.0% | |
| CTTCAGATGAAAATAGAAGA+AGG | - | chr5.4:45443965-45443984 | None:intergenic | 30.0% | |
| GACATTAAAAATCTTCCACA+TGG | - | chr5.4:45446455-45446474 | None:intergenic | 30.0% | |
| GATCAGTATACTACTTTGAT+TGG | + | chr5.4:45445049-45445068 | MS.gene99600:CDS | 30.0% | |
| GATGCATCTTTATATGGTTT+GGG | + | chr5.4:45444743-45444762 | MS.gene99600:CDS | 30.0% | |
| GATGCATTGTGATAAACTAT+TGG | + | chr5.4:45445368-45445387 | MS.gene99600:intron | 30.0% | |
| GGATATAATTTAATCCCATG+TGG | - | chr5.4:45444782-45444801 | None:intergenic | 30.0% | |
| TAAAGATAAGCTTCCTTTGT+TGG | + | chr5.4:45446478-45446497 | MS.gene99600:intron | 30.0% | |
| TAAATATAACCTCTCTCCTT+AGG | - | chr5.4:45446397-45446416 | None:intergenic | 30.0% | |
| TATAAAGTATAAGGGTCACT+TGG | - | chr5.4:45444803-45444822 | None:intergenic | 30.0% | |
| TATACCGAAATTCAACATTG+TGG | - | chr5.4:45448014-45448033 | None:intergenic | 30.0% | |
| TATGATGCTCATAGTATCTA+TGG | + | chr5.4:45447830-45447849 | MS.gene99600:CDS | 30.0% | |
| TCATGCTTCAAATGCAAAAA+GGG | + | chr5.4:45447072-45447091 | MS.gene99600:intron | 30.0% | |
| TCTATGATTGTGTAATACAG+TGG | + | chr5.4:45445916-45445935 | MS.gene99600:intron | 30.0% | |
| TGAAATGATATCATTCCATG+TGG | - | chr5.4:45446192-45446211 | None:intergenic | 30.0% | |
| TTAAAAATCTTCCACATGGT+TGG | - | chr5.4:45446451-45446470 | None:intergenic | 30.0% | |
| TTCAAGAAGTTTAGAAGCTT+TGG | - | chr5.4:45447329-45447348 | None:intergenic | 30.0% | |
| TTCTTACATGACCAATGTTA+AGG | - | chr5.4:45445511-45445530 | None:intergenic | 30.0% | |
| TTGACTTATAAGGTTATTGG+TGG | + | chr5.4:45444977-45444996 | MS.gene99600:CDS | 30.0% | |
| TTGCATGATCTCTTGAAAAT+GGG | - | chr5.4:45448132-45448151 | None:intergenic | 30.0% | |
| TTTACCAGAACAGAAATTTG+AGG | - | chr5.4:45447618-45447637 | None:intergenic | 30.0% | |
| TTTCTCAGATCCATATACAT+AGG | - | chr5.4:45444878-45444897 | None:intergenic | 30.0% | |
| TTTGCATGATCTCTTGAAAA+TGG | - | chr5.4:45448133-45448152 | None:intergenic | 30.0% | |
| ! | ACAAATACACTGATTACAGT+TGG | - | chr5.4:45446717-45446736 | None:intergenic | 30.0% |
| ! | AGGAACTTCTTTGACTTATA+AGG | + | chr5.4:45444967-45444986 | MS.gene99600:CDS | 30.0% |
| ! | AGTTCTTTTATCAAAGCTTC+AGG | - | chr5.4:45447100-45447119 | None:intergenic | 30.0% |
| ! | ATTGATTCCATTTCTGTGTT+GGG | + | chr5.4:45448805-45448824 | MS.gene99600:CDS | 30.0% |
| ! | CAACCTTTTTGCTAAAGTTT+TGG | + | chr5.4:45446256-45446275 | MS.gene99600:intron | 30.0% |
| ! | GATACTATCAAGATCTTTTC+TGG | + | chr5.4:45446120-45446139 | MS.gene99600:intron | 30.0% |
| ! | GATGTTTTCATCAAGTATGA+AGG | + | chr5.4:45447446-45447465 | MS.gene99600:CDS | 30.0% |
| ! | GGAATGGATGTGTTTTATAA+AGG | + | chr5.4:45444947-45444966 | MS.gene99600:CDS | 30.0% |
| ! | GGTAAATTTGCTTTAGACAA+AGG | + | chr5.4:45448775-45448794 | MS.gene99600:CDS | 30.0% |
| ! | GTTGTTGAATAGTAATGGAA+TGG | + | chr5.4:45444931-45444950 | MS.gene99600:CDS | 30.0% |
| ! | GTTTTTATTATTAGTGCCAG+CGG | - | chr5.4:45445729-45445748 | None:intergenic | 30.0% |
| ! | TCTTTCTATTTTGCTACCTA+AGG | + | chr5.4:45446378-45446397 | MS.gene99600:intron | 30.0% |
| ! | TGATTTTCTCAATCCAAAGA+CGG | + | chr5.4:45447514-45447533 | MS.gene99600:CDS | 30.0% |
| ! | TTTTTATTATTAGTGCCAGC+GGG | - | chr5.4:45445728-45445747 | None:intergenic | 30.0% |
| !! | AAGTTGAAGTTGAGTTGAAA+AGG | - | chr5.4:45444655-45444674 | None:intergenic | 30.0% |
| !! | AATACTCTGAGACTTCAATA+GGG | - | chr5.4:45444556-45444575 | None:intergenic | 30.0% |
| !! | AGTTGAAGTTGAGTTGAAAA+GGG | - | chr5.4:45444654-45444673 | None:intergenic | 30.0% |
| !! | CTTTTGACTGAGAAACTAAA+TGG | - | chr5.4:45444614-45444633 | None:intergenic | 30.0% |
| !! | TATTGATTCCATTTCTGTGT+TGG | + | chr5.4:45448804-45448823 | MS.gene99600:CDS | 30.0% |
| !!! | AGACTTCAATAGGGTTTTTT+TGG | - | chr5.4:45444547-45444566 | None:intergenic | 30.0% |
| !!! | GTTTTTTTGGAACTTTCCTA+AGG | - | chr5.4:45444534-45444553 | None:intergenic | 30.0% |
| !!! | TGGTTTTTTGGTTAAGTTGA+AGG | - | chr5.4:45444076-45444095 | None:intergenic | 30.0% |
| !!! | TGTACCTATTTGTTTTTTGC+AGG | + | chr5.4:45444399-45444418 | MS.gene99600:intron | 30.0% |
| !!! | TTCTTTTTTTGAGATGTGTG+TGG | + | chr5.4:45444163-45444182 | MS.gene99600:intron | 30.0% |
| AAGAACACGATATGTCCAAA+TGG | + | chr5.4:45447650-45447669 | MS.gene99600:CDS | 35.0% | |
| AAGACAAGAGCTTTACCAAT+GGG | + | chr5.4:45448165-45448184 | MS.gene99600:CDS | 35.0% | |
| AAGGAACATGGGAGAATTTA+AGG | + | chr5.4:45447978-45447997 | MS.gene99600:CDS | 35.0% | |
| AAGTTGAAGGAGACCAATAA+GGG | - | chr5.4:45444063-45444082 | None:intergenic | 35.0% | |
| AATTTAATGGGGGAGAAAGA+TGG | + | chr5.4:45446833-45446852 | MS.gene99600:intron | 35.0% | |
| ACTTAGCATAGAACCTAAGA+AGG | - | chr5.4:45444121-45444140 | None:intergenic | 35.0% | |
| AGAACATCACCAAAACAAGA+TGG | + | chr5.4:45447708-45447727 | MS.gene99600:CDS | 35.0% | |
| AGATGCAAACAAGCAAAGAT+GGG | + | chr5.4:45444457-45444476 | MS.gene99600:CDS | 35.0% | |
| AGTTATGGTGTATACCAAAG+GGG | + | chr5.4:45447413-45447432 | MS.gene99600:CDS | 35.0% | |
| ATCAGTTGTTGAAGATGTTG+TGG | + | chr5.4:45447199-45447218 | MS.gene99600:CDS | 35.0% | |
| ATCATACCAAAAGCCCAATA+AGG | - | chr5.4:45445091-45445110 | None:intergenic | 35.0% | |
| ATCTAATCCCAACACAGAAA+TGG | - | chr5.4:45448815-45448834 | None:intergenic | 35.0% | |
| ATGGATCTGAGAAATAATGG+TGG | + | chr5.4:45444884-45444903 | MS.gene99600:CDS | 35.0% | |
| ATGTCATGGTCGTATCATAT+CGG | + | chr5.4:45444303-45444322 | MS.gene99600:intron | 35.0% | |
| ATGTGGTCCATTGTGTTTAA+GGG | + | chr5.4:45446530-45446549 | MS.gene99600:intron | 35.0% | |
| ATTGGTAAAGCTCTTGTCTT+GGG | - | chr5.4:45448165-45448184 | None:intergenic | 35.0% | |
| ATTTCTGTGTTGGGATTAGA+TGG | + | chr5.4:45448814-45448833 | MS.gene99600:CDS | 35.0% | |
| CAGTTATGGTGTATACCAAA+GGG | + | chr5.4:45447412-45447431 | MS.gene99600:CDS | 35.0% | |
| CATAGAAATGCTAAACTGTG+AGG | - | chr5.4:45443921-45443940 | None:intergenic | 35.0% | |
| CATGCCTGCAAAAAACAAAT+AGG | - | chr5.4:45444406-45444425 | None:intergenic | 35.0% | |
| CCAATGTTAAGGTGTAATGA+TGG | - | chr5.4:45445500-45445519 | None:intergenic | 35.0% | |
| CCATCATTACACCTTAACAT+TGG | + | chr5.4:45445497-45445516 | MS.gene99600:intron | 35.0% | |
| CCTTACAAGATAAATGCTTC+TGG | + | chr5.4:45447740-45447759 | MS.gene99600:CDS | 35.0% | |
| CTATATGCTAGTGTCAAACA+AGG | + | chr5.4:45448721-45448740 | MS.gene99600:CDS | 35.0% | |
| CTATTGCATAGTTCTTCAGT+TGG | - | chr5.4:45448085-45448104 | None:intergenic | 35.0% | |
| CTGAAGAACTATGCAATAGA+TGG | + | chr5.4:45448086-45448105 | MS.gene99600:CDS | 35.0% | |
| CTGTCACTGTTTGTTTGATT+TGG | + | chr5.4:45446098-45446117 | MS.gene99600:intron | 35.0% | |
| CTTAGCATAGAACCTAAGAA+GGG | - | chr5.4:45444120-45444139 | None:intergenic | 35.0% | |
| GAACATCACCAAAACAAGAT+GGG | + | chr5.4:45447709-45447728 | MS.gene99600:CDS | 35.0% | |
| GACCCAAAACTTTAGCAAAA+AGG | - | chr5.4:45446262-45446281 | None:intergenic | 35.0% | |
| GCAGCATTTGTGATAAACTA+TGG | + | chr5.4:45445317-45445336 | MS.gene99600:intron | 35.0% | |
| GCAGGATTTGCCTAATTTAA+TGG | + | chr5.4:45446820-45446839 | MS.gene99600:intron | 35.0% | |
| GCATGATGCATAAGAATCTA+AGG | - | chr5.4:45447058-45447077 | None:intergenic | 35.0% | |
| GGATTTGCCTAATTTAATGG+GGG | + | chr5.4:45446823-45446842 | MS.gene99600:intron | 35.0% | |
| GTAAAAACTTTGCCATGACA+TGG | + | chr5.4:45448998-45449017 | MS.gene99600:CDS | 35.0% | |
| GTCTTTGGATTGAGAAAATC+AGG | - | chr5.4:45447515-45447534 | None:intergenic | 35.0% | |
| TAACACTCAACAACAAAAGC+TGG | - | chr5.4:45446147-45446166 | None:intergenic | 35.0% | |
| TACATTGTCATTATTGACCC+TGG | + | chr5.4:45447374-45447393 | MS.gene99600:CDS | 35.0% | |
| TACTGATCAACCACATTCAA+AGG | - | chr5.4:45445037-45445056 | None:intergenic | 35.0% | |
| TACTTCTGAACATGTGCATT+TGG | + | chr5.4:45448909-45448928 | MS.gene99600:CDS | 35.0% | |
| TCAGTTAATGTCACCAACAA+AGG | - | chr5.4:45446494-45446513 | None:intergenic | 35.0% | |
| TCTTTCTCCCCCATTAAATT+AGG | - | chr5.4:45446833-45446852 | None:intergenic | 35.0% | |
| TGGATCTCATCCTATGTATA+TGG | + | chr5.4:45444865-45444884 | MS.gene99600:CDS | 35.0% | |
| TGTTGTGGATAGTTACAAGA+AGG | + | chr5.4:45447214-45447233 | MS.gene99600:CDS | 35.0% | |
| TTAGATGGAAAGCCACTAAT+TGG | + | chr5.4:45448865-45448884 | MS.gene99600:CDS | 35.0% | |
| TTAGCATAGAACCTAAGAAG+GGG | - | chr5.4:45444119-45444138 | None:intergenic | 35.0% | |
| TTGAACAAGATACACAGCAT+TGG | + | chr5.4:45447344-45447363 | MS.gene99600:CDS | 35.0% | |
| TTTCCTAAGGTTTGTGGTAA+TGG | - | chr5.4:45444521-45444540 | None:intergenic | 35.0% | |
| TTTGCCATGACATGGAAAAT+GGG | + | chr5.4:45449006-45449025 | MS.gene99600:CDS | 35.0% | |
| TTTGGACATATCGTGTTCTT+TGG | - | chr5.4:45447650-45447669 | None:intergenic | 35.0% | |
| ! | AAGAAAAGTGGTCTTGCAAT+TGG | - | chr5.4:45448289-45448308 | None:intergenic | 35.0% |
| ! | AAGCACTTTTGCGAAAATTG+GGG | + | chr5.4:45445259-45445278 | MS.gene99600:intron | 35.0% |
| ! | AATATCAGGGCCATAGATTT+TGG | - | chr5.4:45444096-45444115 | None:intergenic | 35.0% |
| ! | ATGGCAAAGTTTTTACCAAC+AGG | - | chr5.4:45448994-45449013 | None:intergenic | 35.0% |
| ! | ATTGAAGTCTCAGAGTATTC+AGG | + | chr5.4:45444557-45444576 | MS.gene99600:CDS | 35.0% |
| ! | GAAGCATTTATCTTGTAAGG+AGG | - | chr5.4:45447740-45447759 | None:intergenic | 35.0% |
| ! | GGATGTAGTTGAAAGTATAG+TGG | - | chr5.4:45445658-45445677 | None:intergenic | 35.0% |
| ! | TAAGTTGAAGGAGACCAATA+AGG | - | chr5.4:45444064-45444083 | None:intergenic | 35.0% |
| ! | TTTTATTATTAGTGCCAGCG+GGG | - | chr5.4:45445727-45445746 | None:intergenic | 35.0% |
| !! | ATATTTGGTGTTCCAATGGT+GGG | + | chr5.4:45448031-45448050 | MS.gene99600:CDS | 35.0% |
| !! | ATTGGTGTTAACTCCAGTTA+TGG | + | chr5.4:45447398-45447417 | MS.gene99600:CDS | 35.0% |
| !! | CCAGAAGCATTTATCTTGTA+AGG | - | chr5.4:45447743-45447762 | None:intergenic | 35.0% |
| !! | CGTAACATTTGGTGTAAGAT+GGG | - | chr5.4:45448318-45448337 | None:intergenic | 35.0% |
| !! | GAAGCACTTTTGCGAAAATT+GGG | + | chr5.4:45445258-45445277 | MS.gene99600:intron | 35.0% |
| !! | GAATACTCTGAGACTTCAAT+AGG | - | chr5.4:45444557-45444576 | None:intergenic | 35.0% |
| !! | GCTATTGTTTTGTATCCGAT+TGG | - | chr5.4:45447776-45447795 | None:intergenic | 35.0% |
| !! | TATATTTGGTGTTCCAATGG+TGG | + | chr5.4:45448030-45448049 | MS.gene99600:CDS | 35.0% |
| !! | TCAGAAGTGTTAGTACTACA+TGG | + | chr5.4:45444351-45444370 | MS.gene99600:intron | 35.0% |
| !! | TCGTAACATTTGGTGTAAGA+TGG | - | chr5.4:45448319-45448338 | None:intergenic | 35.0% |
| !! | TGCAATAGATGGATTGAAGT+TGG | + | chr5.4:45448097-45448116 | MS.gene99600:CDS | 35.0% |
| !!! | AAAGGCCTTTTATTTTGTCG+CGG | + | chr5.4:45447903-45447922 | MS.gene99600:CDS | 35.0% |
| !!! | AGAAGCACTTTTGCGAAAAT+TGG | + | chr5.4:45445257-45445276 | MS.gene99600:intron | 35.0% |
| !!! | AGCTTTTGTTGTTGAGTGTT+AGG | + | chr5.4:45446146-45446165 | MS.gene99600:intron | 35.0% |
| !!! | GAATACTTTTTTGGTCCACA+TGG | + | chr5.4:45446174-45446193 | MS.gene99600:intron | 35.0% |
| !!! | GGCCATAGATTTTGGTTTTT+TGG | - | chr5.4:45444088-45444107 | None:intergenic | 35.0% |
| AAATATGCTGCACATTGGAC+CGG | + | chr5.4:45447947-45447966 | MS.gene99600:CDS | 40.0% | |
| AACATGCGCTTCGTAGTTTA+AGG | - | chr5.4:45448257-45448276 | None:intergenic | 40.0% | |
| AACCTAAGAAGGGGAATATC+AGG | - | chr5.4:45444110-45444129 | None:intergenic | 40.0% | |
| AACGACGATGATCATATGGA+CGG | + | chr5.4:45447263-45447282 | MS.gene99600:CDS | 40.0% | |
| AAGCAGTCTCATGATATCTC+CGG | + | chr5.4:45448363-45448382 | MS.gene99600:CDS | 40.0% | |
| AATGTAACAACGAGCGTGAA+GGG | - | chr5.4:45448598-45448617 | None:intergenic | 40.0% | |
| ACAATTCTTCCAATGCAGCA+AGG | + | chr5.4:45448541-45448560 | MS.gene99600:CDS | 40.0% | |
| ACACTTGACAAGCCAATTAG+TGG | - | chr5.4:45448880-45448899 | None:intergenic | 40.0% | |
| ACCTAAGAAGGGGAATATCA+GGG | - | chr5.4:45444109-45444128 | None:intergenic | 40.0% | |
| ACGATATGTCCAAATGGAAC+AGG | + | chr5.4:45447656-45447675 | MS.gene99600:CDS | 40.0% | |
| ACTAGTGCAACCCACTATAA+CGG | + | chr5.4:45447797-45447816 | MS.gene99600:CDS | 40.0% | |
| AGGAAACAACGCTTTCACTT+GGG | - | chr5.4:45448407-45448426 | None:intergenic | 40.0% | |
| AGGATTCCATCAATGCAGAT+GGG | + | chr5.4:45447163-45447182 | MS.gene99600:intron | 40.0% | |
| AGGGTAGTTCTTTGGATTCA+AGG | - | chr5.4:45447303-45447322 | None:intergenic | 40.0% | |
| AGTAAACTGTACCAACTACC+GGG | - | chr5.4:45448430-45448449 | None:intergenic | 40.0% | |
| AGTTTGGTCAGAAGTTCAAG+AGG | + | chr5.4:45448753-45448772 | MS.gene99600:CDS | 40.0% | |
| ATGTAAGAACCAGTTGTTGC+AGG | + | chr5.4:45445522-45445541 | MS.gene99600:intron | 40.0% | |
| ATTGAGCTACTGAATCCCAT+TGG | - | chr5.4:45448183-45448202 | None:intergenic | 40.0% | |
| CAAGACAAGAGCTTTACCAA+TGG | + | chr5.4:45448164-45448183 | MS.gene99600:CDS | 40.0% | |
| CAGATGCAAACAAGCAAAGA+TGG | + | chr5.4:45444456-45444475 | MS.gene99600:CDS | 40.0% | |
| CATAGTTCTTCAGTTGGTTG+TGG | - | chr5.4:45448079-45448098 | None:intergenic | 40.0% | |
| CATCAGAAGGAGATGCTAAA+GGG | + | chr5.4:45448629-45448648 | MS.gene99600:CDS | 40.0% | |
| CATTGGTAAAGCTCTTGTCT+TGG | - | chr5.4:45448166-45448185 | None:intergenic | 40.0% | |
| CATTTGGAAGGTGAAGGAAA+TGG | + | chr5.4:45448925-45448944 | MS.gene99600:CDS | 40.0% | |
| CCAGAAATGAAGCTTGGAAA+CGG | + | chr5.4:45448679-45448698 | MS.gene99600:CDS | 40.0% | |
| CCAGTTATGGTGTATACCAA+AGG | + | chr5.4:45447411-45447430 | MS.gene99600:CDS | 40.0% | |
| CCTTTGGTATACACCATAAC+TGG | - | chr5.4:45447414-45447433 | None:intergenic | 40.0% | |
| CTTCGTTCATGTCAATCCAT+AGG | - | chr5.4:45447595-45447614 | None:intergenic | 40.0% | |
| CTTTGCCATGACATGGAAAA+TGG | + | chr5.4:45449005-45449024 | MS.gene99600:CDS | 40.0% | |
| GAACTTCCAGAAATGAAGCT+TGG | + | chr5.4:45448673-45448692 | MS.gene99600:CDS | 40.0% | |
| GAAGCCTCAAATTTCTGTTC+TGG | + | chr5.4:45447611-45447630 | MS.gene99600:CDS | 40.0% | |
| GAGAGAATACACAACCACAT+GGG | + | chr5.4:45444765-45444784 | MS.gene99600:CDS | 40.0% | |
| GAGTAAACTGTACCAACTAC+CGG | - | chr5.4:45448431-45448450 | None:intergenic | 40.0% | |
| GATGGGAAAGTGAAGAAAAG+TGG | - | chr5.4:45448301-45448320 | None:intergenic | 40.0% | |
| GATGTGGTCCATTGTGTTTA+AGG | + | chr5.4:45446529-45446548 | MS.gene99600:intron | 40.0% | |
| GTAGACCGCGACAAAATAAA+AGG | - | chr5.4:45447911-45447930 | None:intergenic | 40.0% | |
| GTATGAAGGTGAACCTTTCT+TGG | + | chr5.4:45447460-45447479 | MS.gene99600:CDS | 40.0% | |
| GTCATTATTGACCCTGGAAT+TGG | + | chr5.4:45447380-45447399 | MS.gene99600:CDS | 40.0% | |
| GTTGGTACAGTTTACTCGAT+TGG | + | chr5.4:45448434-45448453 | MS.gene99600:CDS | 40.0% | |
| GTTGTATCCGACATTAGTGT+CGG | - | chr5.4:45444224-45444243 | None:intergenic | 40.0% | |
| GTTTGGTCAGAAGTTCAAGA+GGG | + | chr5.4:45448754-45448773 | MS.gene99600:CDS | 40.0% | |
| TATGCTAGTGTCAAACAAGG+AGG | + | chr5.4:45448724-45448743 | MS.gene99600:CDS | 40.0% | |
| TCAACCACATTCAAAGGAGT+TGG | - | chr5.4:45445031-45445050 | None:intergenic | 40.0% | |
| TCAATCCAAAGACGGTATCT+TGG | + | chr5.4:45447522-45447541 | MS.gene99600:CDS | 40.0% | |
| TCTCTTGGGATAAGGTTGTA+TGG | - | chr5.4:45444488-45444507 | None:intergenic | 40.0% | |
| TCTGAACATGTGCATTTGGA+AGG | + | chr5.4:45448913-45448932 | MS.gene99600:CDS | 40.0% | |
| TGAAGCTACTTCTTCCTCAA+AGG | + | chr5.4:45443980-45443999 | MS.gene99600:CDS | 40.0% | |
| TGGAACTTTCCTAAGGTTTG+TGG | - | chr5.4:45444527-45444546 | None:intergenic | 40.0% | |
| TGGAGTTAACACCAATTCCA+GGG | - | chr5.4:45447394-45447413 | None:intergenic | 40.0% | |
| TGGTGAAAGTAAGACTGTGA+TGG | + | chr5.4:45448945-45448964 | MS.gene99600:CDS | 40.0% | |
| TTCTTGGACTTGAAGGCAAA+AGG | + | chr5.4:45447885-45447904 | MS.gene99600:CDS | 40.0% | |
| TTGGTAAAGCTCTTGTCTTG+GGG | - | chr5.4:45448164-45448183 | None:intergenic | 40.0% | |
| ! | AACAAGGAGGTGTGAAAGTT+TGG | + | chr5.4:45448737-45448756 | MS.gene99600:CDS | 40.0% |
| ! | ATTTTGCTACCTAAGGAGAG+AGG | + | chr5.4:45446385-45446404 | MS.gene99600:intron | 40.0% |
| ! | CTGAAAAGGCTTTGTCTCTT+TGG | - | chr5.4:45445895-45445914 | None:intergenic | 40.0% |
| ! | GTCAGCACTCAGTTTTTACT+CGG | + | chr5.4:45448340-45448359 | MS.gene99600:CDS | 40.0% |
| ! | GTTTTATAGCACCAACCATG+TGG | + | chr5.4:45446437-45446456 | MS.gene99600:intron | 40.0% |
| ! | GTTTTTCCTTGTTCAAGCAC+CGG | - | chr5.4:45448385-45448404 | None:intergenic | 40.0% |
| ! | TCATCCCATTTTCCATGTCA+TGG | - | chr5.4:45449013-45449032 | None:intergenic | 40.0% |
| ! | TCTGGAATACAAGCTCCAAT+CGG | + | chr5.4:45447758-45447777 | MS.gene99600:CDS | 40.0% |
| ! | TTGGGATTAGATGGAAGTGT+TGG | + | chr5.4:45448823-45448842 | MS.gene99600:CDS | 40.0% |
| !! | AAGTTTAGAAGCTTTGGACG+AGG | - | chr5.4:45447323-45447342 | None:intergenic | 40.0% |
| !! | ACGATAGCCTTGACCAATTT+TGG | - | chr5.4:45444009-45444028 | None:intergenic | 40.0% |
| !! | AGTGCTGACATCGTAACATT+TGG | - | chr5.4:45448329-45448348 | None:intergenic | 40.0% |
| !! | AGTTTAGAAGCTTTGGACGA+GGG | - | chr5.4:45447322-45447341 | None:intergenic | 40.0% |
| !! | ATAGCCTTGACCAATTTTGG+TGG | - | chr5.4:45444006-45444025 | None:intergenic | 40.0% |
| !! | CGGTATATTTGGTGTTCCAA+TGG | + | chr5.4:45448027-45448046 | MS.gene99600:CDS | 40.0% |
| AAATTCCGCTCGATGTGATC+TGG | + | chr5.4:45447240-45447259 | MS.gene99600:CDS | 45.0% | |
| AACCCACTATAACGGTGTCT+TGG | + | chr5.4:45447805-45447824 | MS.gene99600:CDS | 45.0% | |
| AACCTTTCTTGGCTCAAGTG+TGG | + | chr5.4:45447471-45447490 | MS.gene99600:CDS | 45.0% | |
| AACTACGAAGCGCATGTTAG+TGG | + | chr5.4:45448259-45448278 | MS.gene99600:CDS | 45.0% | |
| AAGACCCTTGTGAGTTGCAA+CGG | - | chr5.4:45447867-45447886 | None:intergenic | 45.0% | |
| AAGGCCACCAAAATTGGTCA+AGG | + | chr5.4:45443999-45444018 | MS.gene99600:CDS | 45.0% | |
| AAGGGTCTTCTTGGACTTGA+AGG | + | chr5.4:45447878-45447897 | MS.gene99600:CDS | 45.0% | |
| ACAGCCTTGATCATTTGGAC+CGG | + | chr5.4:45446766-45446785 | MS.gene99600:intron | 45.0% | |
| ACCAGGATGGATATGTTGCT+TGG | + | chr5.4:45447679-45447698 | MS.gene99600:CDS | 45.0% | |
| ACCATCAGGGGTTTCTTCAA+TGG | - | chr5.4:45444039-45444058 | None:intergenic | 45.0% | |
| ACTCACACCATCACATCAAC+AGG | + | chr5.4:45448457-45448476 | MS.gene99600:CDS | 45.0% | |
| ACTCCAAGACACCGTTATAG+TGG | - | chr5.4:45447811-45447830 | None:intergenic | 45.0% | |
| ACTTGATGCACCTCTTCATG+TGG | + | chr5.4:45448495-45448514 | MS.gene99600:CDS | 45.0% | |
| ATATCTCCGGTGCTTGAACA+AGG | + | chr5.4:45448376-45448395 | MS.gene99600:CDS | 45.0% | |
| ATCAATCCACCTTGCTGCAT+TGG | - | chr5.4:45448553-45448572 | None:intergenic | 45.0% | |
| ATCCAAAGACGGTATCTTGG+TGG | + | chr5.4:45447525-45447544 | MS.gene99600:CDS | 45.0% | |
| ATTCTTCCAATGCAGCAAGG+TGG | + | chr5.4:45448544-45448563 | MS.gene99600:CDS | 45.0% | |
| CAATCCGTTGCAACTCACAA+GGG | + | chr5.4:45447860-45447879 | MS.gene99600:CDS | 45.0% | |
| CAGGATTCCATCAATGCAGA+TGG | + | chr5.4:45447162-45447181 | MS.gene99600:intron | 45.0% | |
| CATATGTCAGAACCCACCAT+TGG | - | chr5.4:45448046-45448065 | None:intergenic | 45.0% | |
| CATGAACTCGTACCTGTTGA+CGG | + | chr5.4:45447569-45447588 | MS.gene99600:CDS | 45.0% | |
| CATGTGCATTTGGAAGGTGA+AGG | + | chr5.4:45448919-45448938 | MS.gene99600:CDS | 45.0% | |
| CCACCATTACCACAAACCTT+AGG | + | chr5.4:45444515-45444534 | MS.gene99600:CDS | 45.0% | |
| CCATGTTCCTTGATTGTCAC+CGG | - | chr5.4:45447969-45447988 | None:intergenic | 45.0% | |
| CCGTTTCCAAGCTTCATTTC+TGG | - | chr5.4:45448682-45448701 | None:intergenic | 45.0% | |
| CGGTGACAATCAAGGAACAT+GGG | + | chr5.4:45447967-45447986 | MS.gene99600:CDS | 45.0% | |
| CTCCAAGACACCGTTATAGT+GGG | - | chr5.4:45447810-45447829 | None:intergenic | 45.0% | |
| CTGGAACGACGATGATCATA+TGG | + | chr5.4:45447259-45447278 | MS.gene99600:CDS | 45.0% | |
| CTGGAGTTAACACCAATTCC+AGG | - | chr5.4:45447395-45447414 | None:intergenic | 45.0% | |
| GAATGTAACAACGAGCGTGA+AGG | - | chr5.4:45448599-45448618 | None:intergenic | 45.0% | |
| GAGGAAACAACGCTTTCACT+TGG | - | chr5.4:45448408-45448427 | None:intergenic | 45.0% | |
| GATATCCCCATCTGCATTGA+TGG | - | chr5.4:45447172-45447191 | None:intergenic | 45.0% | |
| GCATCAGAAGGAGATGCTAA+AGG | + | chr5.4:45448628-45448647 | MS.gene99600:CDS | 45.0% | |
| GGAGAGAATACACAACCACA+TGG | + | chr5.4:45444764-45444783 | MS.gene99600:CDS | 45.0% | |
| GGATTCCATCAATGCAGATG+GGG | + | chr5.4:45447164-45447183 | MS.gene99600:intron | 45.0% | |
| GTACGAGTTCATGAAAGCGA+CGG | - | chr5.4:45447562-45447581 | None:intergenic | 45.0% | |
| GTCCAAATGATCAAGGCTGT+GGG | - | chr5.4:45446766-45446785 | None:intergenic | 45.0% | |
| GTGGCTTCACTTGAGTTAGA+TGG | + | chr5.4:45448850-45448869 | MS.gene99600:CDS | 45.0% | |
| GTGGTTGTTCTCTTGGGATA+AGG | - | chr5.4:45444496-45444515 | None:intergenic | 45.0% | |
| GTTGTTGCAGGTTCGATACT+CGG | + | chr5.4:45445534-45445553 | MS.gene99600:intron | 45.0% | |
| TCCAAAGACGGTATCTTGGT+GGG | + | chr5.4:45447526-45447545 | MS.gene99600:CDS | 45.0% | |
| TCCAAATGATCAAGGCTGTG+GGG | - | chr5.4:45446765-45446784 | None:intergenic | 45.0% | |
| TCCAAGCAACATATCCATCC+TGG | - | chr5.4:45447683-45447702 | None:intergenic | 45.0% | |
| TCCATTGAAGAAACCCCTGA+TGG | + | chr5.4:45444035-45444054 | MS.gene99600:CDS | 45.0% | |
| TCCTCAAAGGCCACCAAAAT+TGG | + | chr5.4:45443993-45444012 | MS.gene99600:CDS | 45.0% | |
| TGCACATTCACCACATGAAG+AGG | - | chr5.4:45448508-45448527 | None:intergenic | 45.0% | |
| TGGACCAACTCCTTTGAATG+TGG | + | chr5.4:45445024-45445043 | MS.gene99600:CDS | 45.0% | |
| TGGTCGTATCATATCGGTGT+TGG | + | chr5.4:45444309-45444328 | MS.gene99600:intron | 45.0% | |
| TTGTCGCGGTCTACTTATGT+TGG | + | chr5.4:45447917-45447936 | MS.gene99600:CDS | 45.0% | |
| TTTGGACGAGGGTAGTTCTT+TGG | - | chr5.4:45447311-45447330 | None:intergenic | 45.0% | |
| ! | ACCTGCTGCTATGCCTTATT+GGG | + | chr5.4:45445075-45445094 | MS.gene99600:CDS | 45.0% |
| ! | AGTATCGAACCTGCAACAAC+TGG | - | chr5.4:45445534-45445553 | None:intergenic | 45.0% |
| ! | GCGGTCTACTTATGTTGGTT+CGG | + | chr5.4:45447922-45447941 | MS.gene99600:CDS | 45.0% |
| ! | TGATGCACCGACACTAATGT+CGG | + | chr5.4:45444214-45444233 | MS.gene99600:intron | 45.0% |
| !! | AAGGTTTGTGGTAATGGTGG+TGG | - | chr5.4:45444515-45444534 | None:intergenic | 45.0% |
| !! | AATGGTGGTGGTTGTTCTCT+TGG | - | chr5.4:45444503-45444522 | None:intergenic | 45.0% |
| !! | ACCAATTTTGGTGGCCTTTG+AGG | - | chr5.4:45443997-45444016 | None:intergenic | 45.0% |
| !! | ACTGTGATGGTAGCTTTGAG+AGG | + | chr5.4:45448958-45448977 | MS.gene99600:CDS | 45.0% |
| !! | AGGATCGTCCCATCTTGTTT+TGG | - | chr5.4:45447720-45447739 | None:intergenic | 45.0% |
| !! | ATGGTGGGTTCTGACATATG+TGG | + | chr5.4:45448046-45448065 | MS.gene99600:CDS | 45.0% |
| !! | ATGGTGGTGGTTGTTCTCTT+GGG | - | chr5.4:45444502-45444521 | None:intergenic | 45.0% |
| !! | CCTAAGGTTTGTGGTAATGG+TGG | - | chr5.4:45444518-45444537 | None:intergenic | 45.0% |
| !! | CGGTCTACTTATGTTGGTTC+GGG | + | chr5.4:45447923-45447942 | MS.gene99600:CDS | 45.0% |
| !! | CTGTGATGGTAGCTTTGAGA+GGG | + | chr5.4:45448959-45448978 | MS.gene99600:CDS | 45.0% |
| !! | GCAAGGTGGATTGATCTCTA+AGG | + | chr5.4:45448558-45448577 | MS.gene99600:CDS | 45.0% |
| !! | GCTATGCCTTATTGGGCTTT+TGG | + | chr5.4:45445082-45445101 | MS.gene99600:CDS | 45.0% |
| !! | GTTATAGTGGGTTGCACTAG+TGG | - | chr5.4:45447798-45447817 | None:intergenic | 45.0% |
| !! | ATTAAAAATTCAATATAAAA+TGG | - | chr5.4:45445345-45445364 | None:intergenic | 5.0% |
| !!! | TTTATATTTGATTATATTTT+TGG | + | chr5.4:45445153-45445172 | MS.gene99600:intron | 5.0% |
| AAACTGTACCAACTACCGGG+AGG | - | chr5.4:45448427-45448446 | None:intergenic | 50.0% | |
| ACAGCCGGTCCAAATGATCA+AGG | - | chr5.4:45446773-45446792 | None:intergenic | 50.0% | |
| ACCCACCAAGATACCGTCTT+TGG | - | chr5.4:45447530-45447549 | None:intergenic | 50.0% | |
| AGAGGGTTGAGCATTCCTGT+TGG | + | chr5.4:45448976-45448995 | MS.gene99600:CDS | 50.0% | |
| AGTTCCGCCTGTTGATGTGA+TGG | - | chr5.4:45448467-45448486 | None:intergenic | 50.0% | |
| CAAATGGAACAGGACCAGGA+TGG | + | chr5.4:45447666-45447685 | MS.gene99600:CDS | 50.0% | |
| CACACCATCACATCAACAGG+CGG | + | chr5.4:45448460-45448479 | MS.gene99600:CDS | 50.0% | |
| CACGCTCGTTGTTACATTCC+CGG | + | chr5.4:45448600-45448619 | MS.gene99600:CDS | 50.0% | |
| CATCCTGGTCCTGTTCCATT+TGG | - | chr5.4:45447668-45447687 | None:intergenic | 50.0% | |
| CATTGGACCGGTGACAATCA+AGG | + | chr5.4:45447959-45447978 | MS.gene99600:CDS | 50.0% | |
| CCGGTGACAATCAAGGAACA+TGG | + | chr5.4:45447966-45447985 | MS.gene99600:CDS | 50.0% | |
| CGGGCAAATATGCTGCACAT+TGG | + | chr5.4:45447942-45447961 | MS.gene99600:CDS | 50.0% | |
| GACCTGCTGCTATGCCTTAT+TGG | + | chr5.4:45445074-45445093 | MS.gene99600:CDS | 50.0% | |
| GCAACTCACAAGGGTCTTCT+TGG | + | chr5.4:45447869-45447888 | MS.gene99600:CDS | 50.0% | |
| GCAATCCGTTGCAACTCACA+AGG | + | chr5.4:45447859-45447878 | MS.gene99600:CDS | 50.0% | |
| GCCCTGATATTCCCCTTCTT+AGG | + | chr5.4:45444105-45444124 | MS.gene99600:CDS | 50.0% | |
| GGTCCAAATGATCAAGGCTG+TGG | - | chr5.4:45446767-45446786 | None:intergenic | 50.0% | |
| TATTATTAGTGCCAGCGGGG+AGG | - | chr5.4:45445724-45445743 | None:intergenic | 50.0% | |
| TCAATCCATAGGCCGTCAAC+AGG | - | chr5.4:45447584-45447603 | None:intergenic | 50.0% | |
| TCCCCACAGCCTTGATCATT+TGG | + | chr5.4:45446761-45446780 | MS.gene99600:intron | 50.0% | |
| TCGTTCCAGATCACATCGAG+CGG | - | chr5.4:45447248-45447267 | None:intergenic | 50.0% | |
| TGATCATTTGGACCGGCTGT+GGG | + | chr5.4:45446773-45446792 | MS.gene99600:intron | 50.0% | |
| TGTCCAAATGGAACAGGACC+AGG | + | chr5.4:45447662-45447681 | MS.gene99600:CDS | 50.0% | |
| TTACTCCAACGAGTCCACCA+GGG | + | chr5.4:45446736-45446755 | MS.gene99600:intron | 50.0% | |
| TTGATCATTTGGACCGGCTG+TGG | + | chr5.4:45446772-45446791 | MS.gene99600:intron | 50.0% | |
| ! | CATCGTTGGCTAAACCCCTT+TGG | - | chr5.4:45447430-45447449 | None:intergenic | 50.0% |
| !! | ACCAATAAGGGCACCATCAG+GGG | - | chr5.4:45444051-45444070 | None:intergenic | 50.0% |
| !! | AGACCAATAAGGGCACCATC+AGG | - | chr5.4:45444053-45444072 | None:intergenic | 50.0% |
| !! | AGATGGAAGTGTTGGAGCAG+TGG | + | chr5.4:45448831-45448850 | MS.gene99600:CDS | 50.0% |
| !! | GACCAATAAGGGCACCATCA+GGG | - | chr5.4:45444052-45444071 | None:intergenic | 50.0% |
| !! | GTGAAAGCGTTGTTTCCTCC+CGG | + | chr5.4:45448409-45448428 | MS.gene99600:CDS | 50.0% |
| AACAACGAGCGTGAAGGGTG+TGG | - | chr5.4:45448593-45448612 | None:intergenic | 55.0% | |
| CTCGTTGTTACATTCCCGGC+TGG | + | chr5.4:45448604-45448623 | MS.gene99600:CDS | 55.0% | |
| GCCCAATAAGGCATAGCAGC+AGG | - | chr5.4:45445079-45445098 | None:intergenic | 55.0% | |
| GGCCACACTTGAGCCAAGAA+AGG | - | chr5.4:45447476-45447495 | None:intergenic | 55.0% | |
| GTTACTCCAACGAGTCCACC+AGG | + | chr5.4:45446735-45446754 | MS.gene99600:intron | 55.0% | |
| TCAGGAAAGTTTACCGCCCC+AGG | - | chr5.4:45447497-45447516 | None:intergenic | 55.0% | |
| TCGTACCTGTTGACGGCCTA+TGG | + | chr5.4:45447576-45447595 | MS.gene99600:CDS | 55.0% | |
| TCTCCTTCTGATGCACCAGC+CGG | - | chr5.4:45448622-45448641 | None:intergenic | 55.0% | |
| TCTTGGCTCAAGTGTGGCCT+GGG | + | chr5.4:45447477-45447496 | MS.gene99600:CDS | 55.0% | |
| TTCTTGGCTCAAGTGTGGCC+TGG | + | chr5.4:45447476-45447495 | MS.gene99600:CDS | 55.0% | |
| ! | ACCCCTGATGGTGCCCTTAT+TGG | + | chr5.4:45444047-45444066 | MS.gene99600:CDS | 55.0% |
| ! | CGTTGTTTCCTCCCGGTAGT+TGG | + | chr5.4:45448416-45448435 | MS.gene99600:CDS | 55.0% |
| CTCCTTCTGATGCACCAGCC+GGG | - | chr5.4:45448621-45448640 | None:intergenic | 60.0% | |
| CTTGGCTCAAGTGTGGCCTG+GGG | + | chr5.4:45447478-45447497 | MS.gene99600:CDS | 60.0% | |
| TATTAGTGCCAGCGGGGAGG+TGG | - | chr5.4:45445721-45445740 | None:intergenic | 60.0% | |
| TCAAGGCTGTGGGGATACCC+TGG | - | chr5.4:45446756-45446775 | None:intergenic | 60.0% | |
| TCCTGCTCAATGAGCCGACC+CGG | - | chr5.4:45446806-45446825 | None:intergenic | 60.0% | |
| TTAAGTGTCCACCTCCCCGC+TGG | + | chr5.4:45445710-45445729 | MS.gene99600:intron | 60.0% | |
| TTCCCGGCTGGTGCATCAGA+AGG | + | chr5.4:45448616-45448635 | MS.gene99600:CDS | 60.0% | |
| !! | GGATACCCTGGTGGACTCGT+TGG | - | chr5.4:45446744-45446763 | None:intergenic | 60.0% |
| ACCGGCTGTGGGACTAACCC+CGG | + | chr5.4:45446784-45446803 | MS.gene99600:intron | 65.0% | |
| AGGCTGTGGGGATACCCTGG+TGG | - | chr5.4:45446753-45446772 | None:intergenic | 65.0% | |
| CCTGCTCAATGAGCCGACCC+GGG | - | chr5.4:45446805-45446824 | None:intergenic | 65.0% | |
| CTGCTCAATGAGCCGACCCG+GGG | - | chr5.4:45446804-45446823 | None:intergenic | 65.0% | |
| CTGTGGGACTAACCCCGGGT+CGG | + | chr5.4:45446789-45446808 | MS.gene99600:intron | 65.0% | |
| CCGGCTGTGGGACTAACCCC+GGG | + | chr5.4:45446785-45446804 | MS.gene99600:intron | 70.0% | |
| GGCTCAAGTGTGGCCTGGGG+CGG | + | chr5.4:45447481-45447500 | MS.gene99600:CDS | 70.0% | |
| ! | CCCGGGTCGGCTCATTGAGC+AGG | + | chr5.4:45446802-45446821 | MS.gene99600:intron | 70.0% |
| !! | CCCGGGGTTAGTCCCACAGC+CGG | - | chr5.4:45446788-45446807 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 45443909 | 45449032 | 45443909 | ID=MS.gene99600 |
| chr5.4 | mRNA | 45443909 | 45449032 | 45443909 | ID=MS.gene99600.t1;Parent=MS.gene99600 |
| chr5.4 | exon | 45443909 | 45444138 | 45443909 | ID=MS.gene99600.t1.exon1;Parent=MS.gene99600.t1 |
| chr5.4 | CDS | 45443909 | 45444138 | 45443909 | ID=cds.MS.gene99600.t1;Parent=MS.gene99600.t1 |
| chr5.4 | exon | 45444421 | 45445103 | 45444421 | ID=MS.gene99600.t1.exon2;Parent=MS.gene99600.t1 |
| chr5.4 | CDS | 45444421 | 45445103 | 45444421 | ID=cds.MS.gene99600.t1;Parent=MS.gene99600.t1 |
| chr5.4 | exon | 45447165 | 45449032 | 45447165 | ID=MS.gene99600.t1.exon3;Parent=MS.gene99600.t1 |
| chr5.4 | CDS | 45447165 | 45449032 | 45447165 | ID=cds.MS.gene99600.t1;Parent=MS.gene99600.t1 |
| Gene Sequence |
| Protein sequence |
