AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99600.t1 MTR_5g057990 98.490 927 12 2 1 926 1 926 0.0 1885
MS.gene99600.t1 MTR_1g110980 80.488 902 170 3 26 926 28 924 0.0 1546
MS.gene99600.t1 MTR_1g111000 75.932 939 211 5 1 926 1 937 0.0 1492
MS.gene99600.t1 MTR_3g096870 29.444 720 383 20 188 859 217 859 8.63e-83 286
MS.gene99600.t1 MTR_5g026610 30.233 645 376 15 178 816 81 657 4.72e-76 267
MS.gene99600.t1 MTR_5g026610 30.354 649 370 18 178 816 144 720 1.01e-75 268
MS.gene99600.t1 MTR_5g026610 30.388 645 375 16 178 816 81 657 1.46e-75 268
MS.gene99600.t1 MTR_5g026610 30.354 649 370 18 178 816 144 720 2.16e-75 268
MS.gene99600.t1 MTR_5g026610 30.354 649 370 18 178 816 184 760 4.28e-75 267
MS.gene99600.t1 MTR_5g026610 31.743 482 263 12 339 816 2 421 1.38e-59 218
MS.gene99600.t1 MTR_6g014900 64.706 51 18 0 639 689 82 132 1.74e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99600.t1 AT1G68560 75.588 893 207 4 35 926 31 913 0.0 1444
MS.gene99600.t1 AT3G45940 64.744 919 252 9 11 926 4 853 0.0 1226
MS.gene99600.t1 AT5G11720 45.464 926 455 15 15 925 11 901 0.0 813
MS.gene99600.t1 AT5G63840 29.506 749 419 18 148 859 189 865 6.29e-87 298
MS.gene99600.t1 AT5G63840 29.506 749 419 18 148 859 216 892 9.37e-87 298
MS.gene99600.t1 AT3G23640 34.347 559 277 17 271 818 238 717 1.91e-84 294
MS.gene99600.t1 AT3G23640 34.347 559 277 17 271 818 169 648 2.34e-84 292
MS.gene99600.t1 AT3G23640 34.347 559 277 17 271 818 169 648 2.34e-84 292

Find 243 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATGCGCTTCGTAGTTTA+AGG 0.142427 5.4:-45448254 None:intergenic
ACGATAGCCTTGACCAATTT+TGG 0.159411 5.4:-45444006 None:intergenic
AATCTTAATGCTGATTTATA+TGG 0.165923 5.4:+45444845 MS.gene99600:CDS
CTTTGCCATGACATGGAAAA+TGG 0.172380 5.4:+45449005 MS.gene99600:CDS
CCGTTTCCAAGCTTCATTTC+TGG 0.183467 5.4:-45448679 None:intergenic
AAGGAACATGGGAGAATTTA+AGG 0.193751 5.4:+45447978 MS.gene99600:CDS
ACCCCTGATGGTGCCCTTAT+TGG 0.202977 5.4:+45444047 MS.gene99600:CDS
TTTGCATGATCTCTTGAAAA+TGG 0.216652 5.4:-45448130 None:intergenic
TCTTTGACTTATAAGGTTAT+TGG 0.219457 5.4:+45444974 MS.gene99600:CDS
CCTAAAGATGCATCTTTATA+TGG 0.220928 5.4:+45444737 MS.gene99600:CDS
AATATCAGGGCCATAGATTT+TGG 0.228691 5.4:-45444093 None:intergenic
TTCTTGGCTCAAGTGTGGCC+TGG 0.233420 5.4:+45447476 MS.gene99600:CDS
ATGTTGAATTTCGGTATATT+TGG 0.235345 5.4:+45448016 MS.gene99600:CDS
AGGAACTTCTTTGACTTATA+AGG 0.239990 5.4:+45444967 MS.gene99600:CDS
TCAGTTGTATATAAAGTATA+AGG 0.253421 5.4:-45444809 None:intergenic
GCTATGCCTTATTGGGCTTT+TGG 0.262409 5.4:+45445082 MS.gene99600:CDS
GACCTGCTGCTATGCCTTAT+TGG 0.263069 5.4:+45445074 MS.gene99600:CDS
TTTGGACATATCGTGTTCTT+TGG 0.265426 5.4:-45447647 None:intergenic
TCCTCAAAGGCCACCAAAAT+TGG 0.270256 5.4:+45443993 MS.gene99600:CDS
ACCTGCTGCTATGCCTTATT+GGG 0.284459 5.4:+45445075 MS.gene99600:CDS
TCTTGGCTCAAGTGTGGCCT+GGG 0.284572 5.4:+45447477 MS.gene99600:CDS
TTCAAGAAGTTTAGAAGCTT+TGG 0.286291 5.4:-45447326 None:intergenic
CTAGAAATGCTTTAGGTATA+AGG 0.287015 5.4:+45448206 MS.gene99600:CDS
TTGAAAACAAGTGAACTAAA+TGG 0.291574 5.4:-45444683 None:intergenic
AATGGTGGTGGTTGTTCTCT+TGG 0.296023 5.4:-45444500 None:intergenic
AGATGCATCTTTATATGGTT+TGG 0.300835 5.4:+45444742 MS.gene99600:CDS
AACCTAAGAAGGGGAATATC+AGG 0.302044 5.4:-45444107 None:intergenic
TTAGATGGAAAGCCACTAAT+TGG 0.303561 5.4:+45448865 MS.gene99600:CDS
ATTGGTAAAGCTCTTGTCTT+GGG 0.307685 5.4:-45448162 None:intergenic
GTATGAAGGTGAACCTTTCT+TGG 0.309484 5.4:+45447460 MS.gene99600:CDS
TTTCCTAAGGTTTGTGGTAA+TGG 0.313549 5.4:-45444518 None:intergenic
CCAGAAGCATTTATCTTGTA+AGG 0.319754 5.4:-45447740 None:intergenic
TGGATCTCATCCTATGTATA+TGG 0.322901 5.4:+45444865 MS.gene99600:CDS
CCTTACAAGATAAATGCTTC+TGG 0.322935 5.4:+45447740 MS.gene99600:CDS
GTGGTTGTTCTCTTGGGATA+AGG 0.326394 5.4:-45444493 None:intergenic
GCAACTCACAAGGGTCTTCT+TGG 0.327161 5.4:+45447869 MS.gene99600:CDS
ATTGAAGTCTCAGAGTATTC+AGG 0.331496 5.4:+45444557 MS.gene99600:CDS
ATTGATTCCATTTCTGTGTT+GGG 0.332469 5.4:+45448805 MS.gene99600:CDS
ACCCACCAAGATACCGTCTT+TGG 0.334922 5.4:-45447527 None:intergenic
GATGCATCTTTATATGGTTT+GGG 0.338606 5.4:+45444743 MS.gene99600:CDS
GCCCTGATATTCCCCTTCTT+AGG 0.339169 5.4:+45444105 MS.gene99600:CDS
TTTGGACGAGGGTAGTTCTT+TGG 0.339509 5.4:-45447308 None:intergenic
AACAAGGAGGTGTGAAAGTT+TGG 0.339571 5.4:+45448737 MS.gene99600:CDS
CACGCTCGTTGTTACATTCC+CGG 0.340620 5.4:+45448600 MS.gene99600:CDS
CATCCTGGTCCTGTTCCATT+TGG 0.345366 5.4:-45447665 None:intergenic
CCATATAAAGATGCATCTTT+AGG 0.345622 5.4:-45444737 None:intergenic
ATTTCTGTGTTGGGATTAGA+TGG 0.346671 5.4:+45448814 MS.gene99600:CDS
GATCAGTATACTACTTTGAT+TGG 0.350998 5.4:+45445049 MS.gene99600:CDS
ATATCCACAATGTTGAATTT+CGG 0.352326 5.4:+45448007 MS.gene99600:CDS
CTGTTATGTGTACTCTTAAT+CGG 0.353456 5.4:-45444436 None:intergenic
AGGATCGTCCCATCTTGTTT+TGG 0.363147 5.4:-45447717 None:intergenic
GTAGACCGCGACAAAATAAA+AGG 0.365335 5.4:-45447908 None:intergenic
TACTTCTGAACATGTGCATT+TGG 0.366445 5.4:+45448909 MS.gene99600:CDS
GTCTTTGGATTGAGAAAATC+AGG 0.367465 5.4:-45447512 None:intergenic
GAATACTCTGAGACTTCAAT+AGG 0.367685 5.4:-45444554 None:intergenic
CGGTCTACTTATGTTGGTTC+GGG 0.368222 5.4:+45447923 MS.gene99600:CDS
GAAGCCTCAAATTTCTGTTC+TGG 0.368564 5.4:+45447611 MS.gene99600:CDS
TATGATGCTCATAGTATCTA+TGG 0.368905 5.4:+45447830 MS.gene99600:CDS
CCTTTGGTATACACCATAAC+TGG 0.369803 5.4:-45447411 None:intergenic
TTGTTGAAATCTCAAGATAT+TGG 0.372770 5.4:-45444709 None:intergenic
GTGGCTTCACTTGAGTTAGA+TGG 0.373357 5.4:+45448850 MS.gene99600:CDS
TAAGTTGAAGGAGACCAATA+AGG 0.376052 5.4:-45444061 None:intergenic
CTGAAGAACTATGCAATAGA+TGG 0.376212 5.4:+45448086 MS.gene99600:CDS
ATCATACCAAAAGCCCAATA+AGG 0.377929 5.4:-45445088 None:intergenic
GATATCCCCATCTGCATTGA+TGG 0.387246 5.4:-45447169 None:intergenic
GCGGTCTACTTATGTTGGTT+CGG 0.391522 5.4:+45447922 MS.gene99600:CDS
GTCATTATTGACCCTGGAAT+TGG 0.397156 5.4:+45447380 MS.gene99600:CDS
ATGGTGGTGGTTGTTCTCTT+GGG 0.398455 5.4:-45444499 None:intergenic
ACACTTGACAAGCCAATTAG+TGG 0.400133 5.4:-45448877 None:intergenic
ATCAATCCACCTTGCTGCAT+TGG 0.404465 5.4:-45448550 None:intergenic
AACTACGAAGCGCATGTTAG+TGG 0.404979 5.4:+45448259 MS.gene99600:CDS
TAGTTTAAGGTGTAAAGATA+TGG 0.405653 5.4:-45448241 None:intergenic
AGTTGAAGTTGAGTTGAAAA+GGG 0.409807 5.4:-45444651 None:intergenic
AAGTTGAAGTTGAGTTGAAA+AGG 0.411882 5.4:-45444652 None:intergenic
AAGGGTCTTCTTGGACTTGA+AGG 0.413515 5.4:+45447878 MS.gene99600:CDS
AAATTCCGCTCGATGTGATC+TGG 0.413564 5.4:+45447240 MS.gene99600:CDS
CAATCAGCTAGAAATGCTTT+AGG 0.418336 5.4:+45448199 MS.gene99600:CDS
TCAATCCAAAGACGGTATCT+TGG 0.419549 5.4:+45447522 MS.gene99600:CDS
AGGGTAGTTCTTTGGATTCA+AGG 0.420050 5.4:-45447300 None:intergenic
TGGAACTTTCCTAAGGTTTG+TGG 0.421087 5.4:-45444524 None:intergenic
CATGAACTCGTACCTGTTGA+CGG 0.426235 5.4:+45447569 MS.gene99600:CDS
TCGTACCTGTTGACGGCCTA+TGG 0.426914 5.4:+45447576 MS.gene99600:CDS
CATAGTTCTTCAGTTGGTTG+TGG 0.434783 5.4:-45448076 None:intergenic
CAGATGCAAACAAGCAAAGA+TGG 0.439003 5.4:+45444456 MS.gene99600:CDS
ATCTAATCCCAACACAGAAA+TGG 0.439538 5.4:-45448812 None:intergenic
TATATGGATCTGAGAAATAA+TGG 0.439740 5.4:+45444881 MS.gene99600:CDS
TTCTTGGACTTGAAGGCAAA+AGG 0.441950 5.4:+45447885 MS.gene99600:CDS
TCTCTTGGGATAAGGTTGTA+TGG 0.443474 5.4:-45444485 None:intergenic
TTGACTTATAAGGTTATTGG+TGG 0.444386 5.4:+45444977 MS.gene99600:CDS
CTGGAGTTAACACCAATTCC+AGG 0.446779 5.4:-45447392 None:intergenic
TATTGATTCCATTTCTGTGT+TGG 0.446974 5.4:+45448804 MS.gene99600:CDS
GCAAGGTGGATTGATCTCTA+AGG 0.447708 5.4:+45448558 MS.gene99600:CDS
AGACCAATAAGGGCACCATC+AGG 0.448219 5.4:-45444050 None:intergenic
ACTCCAAGACACCGTTATAG+TGG 0.450821 5.4:-45447808 None:intergenic
TGAAAACAAGTGAACTAAAT+GGG 0.454745 5.4:-45444682 None:intergenic
ACCATCAGGGGTTTCTTCAA+TGG 0.458833 5.4:-45444036 None:intergenic
TTGCATGATCTCTTGAAAAT+GGG 0.465416 5.4:-45448129 None:intergenic
ACCAGGATGGATATGTTGCT+TGG 0.465580 5.4:+45447679 MS.gene99600:CDS
GAGGAAACAACGCTTTCACT+TGG 0.466847 5.4:-45448405 None:intergenic
CATCGTTGGCTAAACCCCTT+TGG 0.466924 5.4:-45447427 None:intergenic
GTTGGTACAGTTTACTCGAT+TGG 0.473073 5.4:+45448434 MS.gene99600:CDS
TCGTAACATTTGGTGTAAGA+TGG 0.474224 5.4:-45448316 None:intergenic
TTGTCGCGGTCTACTTATGT+TGG 0.474500 5.4:+45447917 MS.gene99600:CDS
CTGGAACGACGATGATCATA+TGG 0.474710 5.4:+45447259 MS.gene99600:CDS
CGTTGTTTCCTCCCGGTAGT+TGG 0.476352 5.4:+45448416 MS.gene99600:CDS
ACTCACACCATCACATCAAC+AGG 0.478651 5.4:+45448457 MS.gene99600:CDS
TCAATCCATAGGCCGTCAAC+AGG 0.479710 5.4:-45447581 None:intergenic
CGGTATATTTGGTGTTCCAA+TGG 0.480390 5.4:+45448027 MS.gene99600:CDS
CCATGTTCCTTGATTGTCAC+CGG 0.482726 5.4:-45447966 None:intergenic
TCAGGAAAGTTTACCGCCCC+AGG 0.483976 5.4:-45447494 None:intergenic
ACGATATGTCCAAATGGAAC+AGG 0.485380 5.4:+45447656 MS.gene99600:CDS
TATATTTGGTGTTCCAATGG+TGG 0.488042 5.4:+45448030 MS.gene99600:CDS
TTTACCAGAACAGAAATTTG+AGG 0.488269 5.4:-45447615 None:intergenic
TCTCCTTCTGATGCACCAGC+CGG 0.490316 5.4:-45448619 None:intergenic
ATTGGTGTTAACTCCAGTTA+TGG 0.492063 5.4:+45447398 MS.gene99600:CDS
CATTGGTAAAGCTCTTGTCT+TGG 0.492147 5.4:-45448163 None:intergenic
AATACTCTGAGACTTCAATA+GGG 0.492896 5.4:-45444553 None:intergenic
CTCGTTGTTACATTCCCGGC+TGG 0.493742 5.4:+45448604 MS.gene99600:CDS
CTATTGCATAGTTCTTCAGT+TGG 0.495820 5.4:-45448082 None:intergenic
TTTCTCAGATCCATATACAT+AGG 0.497998 5.4:-45444875 None:intergenic
CAGTTATGGTGTATACCAAA+GGG 0.499204 5.4:+45447412 MS.gene99600:CDS
CTTCAGATGAAAATAGAAGA+AGG 0.500461 5.4:-45443962 None:intergenic
GGTAAATTTGCTTTAGACAA+AGG 0.501257 5.4:+45448775 MS.gene99600:CDS
CATCAGAAGGAGATGCTAAA+GGG 0.503388 5.4:+45448629 MS.gene99600:CDS
AAGAAAAGTGGTCTTGCAAT+TGG 0.503440 5.4:-45448286 None:intergenic
CGTAACATTTGGTGTAAGAT+GGG 0.503599 5.4:-45448315 None:intergenic
ACTTAGCATAGAACCTAAGA+AGG 0.505923 5.4:-45444118 None:intergenic
ATACTTGATGAAAACATCGT+TGG 0.508108 5.4:-45447441 None:intergenic
AAGACAAGAGCTTTACCAAT+GGG 0.512360 5.4:+45448165 MS.gene99600:CDS
ATATTTGGTGTTCCAATGGT+GGG 0.513486 5.4:+45448031 MS.gene99600:CDS
GGCTCAAGTGTGGCCTGGGG+CGG 0.516405 5.4:+45447481 MS.gene99600:CDS
GAACTTCCAGAAATGAAGCT+TGG 0.516701 5.4:+45448673 MS.gene99600:CDS
CAGTTGTATATAAAGTATAA+GGG 0.516738 5.4:-45444808 None:intergenic
CTCCTTCTGATGCACCAGCC+GGG 0.517533 5.4:-45448618 None:intergenic
ACCAATAAGGGCACCATCAG+GGG 0.519110 5.4:-45444048 None:intergenic
CCAGAAATGAAGCTTGGAAA+CGG 0.521555 5.4:+45448679 MS.gene99600:CDS
CAGGATTCCATCAATGCAGA+TGG 0.521721 5.4:+45447162 MS.gene99600:intron
GTTATAGTGGGTTGCACTAG+TGG 0.522996 5.4:-45447795 None:intergenic
TTTGCCATGACATGGAAAAT+GGG 0.523263 5.4:+45449006 MS.gene99600:CDS
AACCTTTCTTGGCTCAAGTG+TGG 0.523753 5.4:+45447471 MS.gene99600:CDS
ATCCAAAGACGGTATCTTGG+TGG 0.524403 5.4:+45447525 MS.gene99600:CDS
CATTGGACCGGTGACAATCA+AGG 0.524939 5.4:+45447959 MS.gene99600:CDS
TCAGTCAAAAGAAAATCAAA+TGG 0.527251 5.4:+45444623 MS.gene99600:CDS
GCCCAATAAGGCATAGCAGC+AGG 0.529330 5.4:-45445076 None:intergenic
AAGGTTTGTGGTAATGGTGG+TGG 0.529787 5.4:-45444512 None:intergenic
CCACCATTACCACAAACCTT+AGG 0.531410 5.4:+45444515 MS.gene99600:CDS
AAGTTGAAGGAGACCAATAA+GGG 0.534621 5.4:-45444060 None:intergenic
GCATCAGAAGGAGATGCTAA+AGG 0.534788 5.4:+45448628 MS.gene99600:CDS
TGTCCAAATGGAACAGGACC+AGG 0.534970 5.4:+45447662 MS.gene99600:CDS
TACATTGTCATTATTGACCC+TGG 0.538902 5.4:+45447374 MS.gene99600:CDS
AAGAACACGATATGTCCAAA+TGG 0.540149 5.4:+45447650 MS.gene99600:CDS
GTTGTTGAATAGTAATGGAA+TGG 0.541632 5.4:+45444931 MS.gene99600:CDS
AAATATGCTGCACATTGGAC+CGG 0.543658 5.4:+45447947 MS.gene99600:CDS
TCCAAGCAACATATCCATCC+TGG 0.543677 5.4:-45447680 None:intergenic
GGCCACACTTGAGCCAAGAA+AGG 0.545802 5.4:-45447473 None:intergenic
AGATGGAAGTGTTGGAGCAG+TGG 0.546659 5.4:+45448831 MS.gene99600:CDS
GTGAAAGCGTTGTTTCCTCC+CGG 0.549168 5.4:+45448409 MS.gene99600:CDS
ATCAGTTGTTGAAGATGTTG+TGG 0.549536 5.4:+45447199 MS.gene99600:CDS
AAGACCCTTGTGAGTTGCAA+CGG 0.550669 5.4:-45447864 None:intergenic
GATGGGAAAGTGAAGAAAAG+TGG 0.551252 5.4:-45448298 None:intergenic
GAGTAAACTGTACCAACTAC+CGG 0.552239 5.4:-45448428 None:intergenic
TGGACCAACTCCTTTGAATG+TGG 0.552956 5.4:+45445024 MS.gene99600:CDS
AGAACATCACCAAAACAAGA+TGG 0.554704 5.4:+45447708 MS.gene99600:CDS
AATGTAACAACGAGCGTGAA+GGG 0.555217 5.4:-45448595 None:intergenic
TTCAGATGAAAATAGAAGAA+GGG 0.555350 5.4:-45443961 None:intergenic
ACTAGTGCAACCCACTATAA+CGG 0.556439 5.4:+45447797 MS.gene99600:CDS
GACCAATAAGGGCACCATCA+GGG 0.558124 5.4:-45444049 None:intergenic
CCTAAGGTTTGTGGTAATGG+TGG 0.558277 5.4:-45444515 None:intergenic
TGCACATTCACCACATGAAG+AGG 0.558516 5.4:-45448505 None:intergenic
CCGGTGACAATCAAGGAACA+TGG 0.558617 5.4:+45447966 MS.gene99600:CDS
GCAATCCGTTGCAACTCACA+AGG 0.561861 5.4:+45447859 MS.gene99600:CDS
AAGCAGTCTCATGATATCTC+CGG 0.562483 5.4:+45448363 MS.gene99600:CDS
TACTGATCAACCACATTCAA+AGG 0.563536 5.4:-45445034 None:intergenic
AGATGCAAACAAGCAAAGAT+GGG 0.564971 5.4:+45444457 MS.gene99600:CDS
TCTGGAATACAAGCTCCAAT+CGG 0.565528 5.4:+45447758 MS.gene99600:CDS
TTCCCGGCTGGTGCATCAGA+AGG 0.565712 5.4:+45448616 MS.gene99600:CDS
TCAACCACATTCAAAGGAGT+TGG 0.566294 5.4:-45445028 None:intergenic
TGCAATAGATGGATTGAAGT+TGG 0.569941 5.4:+45448097 MS.gene99600:CDS
CATATGTCAGAACCCACCAT+TGG 0.570826 5.4:-45448043 None:intergenic
TTGGGATTAGATGGAAGTGT+TGG 0.571364 5.4:+45448823 MS.gene99600:CDS
AAGTTTAGAAGCTTTGGACG+AGG 0.575396 5.4:-45447320 None:intergenic
AGTGCTGACATCGTAACATT+TGG 0.575683 5.4:-45448326 None:intergenic
AACAACGAGCGTGAAGGGTG+TGG 0.579976 5.4:-45448590 None:intergenic
CTTCGTTCATGTCAATCCAT+AGG 0.580153 5.4:-45447592 None:intergenic
CCAGTTATGGTGTATACCAA+AGG 0.580821 5.4:+45447411 MS.gene99600:CDS
AGGATTCCATCAATGCAGAT+GGG 0.583052 5.4:+45447163 MS.gene99600:intron
AACCCACTATAACGGTGTCT+TGG 0.585133 5.4:+45447805 MS.gene99600:CDS
CGGGCAAATATGCTGCACAT+TGG 0.585282 5.4:+45447942 MS.gene99600:CDS
TTGGTAAAGCTCTTGTCTTG+GGG 0.587218 5.4:-45448161 None:intergenic
CTTGGCTCAAGTGTGGCCTG+GGG 0.588583 5.4:+45447478 MS.gene99600:CDS
GAATGTAACAACGAGCGTGA+AGG 0.590971 5.4:-45448596 None:intergenic
CTTAGCATAGAACCTAAGAA+GGG 0.592875 5.4:-45444117 None:intergenic
AGGAAACAACGCTTTCACTT+GGG 0.594189 5.4:-45448404 None:intergenic
TATAAAGTATAAGGGTCACT+TGG 0.594372 5.4:-45444800 None:intergenic
ATATCTCCGGTGCTTGAACA+AGG 0.594465 5.4:+45448376 MS.gene99600:CDS
TGAAGCTACTTCTTCCTCAA+AGG 0.596640 5.4:+45443980 MS.gene99600:CDS
AGTTTAGAAGCTTTGGACGA+GGG 0.596956 5.4:-45447319 None:intergenic
TTGAACAAGATACACAGCAT+TGG 0.600111 5.4:+45447344 MS.gene99600:CDS
CATTTGGAAGGTGAAGGAAA+TGG 0.600808 5.4:+45448925 MS.gene99600:CDS
TCCAAAGACGGTATCTTGGT+GGG 0.601129 5.4:+45447526 MS.gene99600:CDS
TCTGAACATGTGCATTTGGA+AGG 0.603305 5.4:+45448913 MS.gene99600:CDS
GAACATCACCAAAACAAGAT+GGG 0.603407 5.4:+45447709 MS.gene99600:CDS
TGGAGTTAACACCAATTCCA+GGG 0.605234 5.4:-45447391 None:intergenic
ATTGAGCTACTGAATCCCAT+TGG 0.607522 5.4:-45448180 None:intergenic
ACCTAAGAAGGGGAATATCA+GGG 0.608020 5.4:-45444106 None:intergenic
GAAGCATTTATCTTGTAAGG+AGG 0.609541 5.4:-45447737 None:intergenic
TGTTGTGGATAGTTACAAGA+AGG 0.610027 5.4:+45447214 MS.gene99600:CDS
TATACCGAAATTCAACATTG+TGG 0.611148 5.4:-45448011 None:intergenic
CTATATGCTAGTGTCAAACA+AGG 0.612842 5.4:+45448721 MS.gene99600:CDS
CTCCAAGACACCGTTATAGT+GGG 0.622378 5.4:-45447807 None:intergenic
AAGGCCACCAAAATTGGTCA+AGG 0.623219 5.4:+45443999 MS.gene99600:CDS
CAAGACAAGAGCTTTACCAA+TGG 0.624512 5.4:+45448164 MS.gene99600:CDS
GGATATAATTTAATCCCATG+TGG 0.629764 5.4:-45444779 None:intergenic
AGTTTGGTCAGAAGTTCAAG+AGG 0.635859 5.4:+45448753 MS.gene99600:CDS
AGTTCCGCCTGTTGATGTGA+TGG 0.636334 5.4:-45448464 None:intergenic
ATGGATCTGAGAAATAATGG+TGG 0.637533 5.4:+45444884 MS.gene99600:CDS
AGTAAACTGTACCAACTACC+GGG 0.640442 5.4:-45448427 None:intergenic
ACTTGATGCACCTCTTCATG+TGG 0.643407 5.4:+45448495 MS.gene99600:CDS
CAATCCGTTGCAACTCACAA+GGG 0.647962 5.4:+45447860 MS.gene99600:CDS
AGAGGGTTGAGCATTCCTGT+TGG 0.649091 5.4:+45448976 MS.gene99600:CDS
ACTGTGATGGTAGCTTTGAG+AGG 0.649524 5.4:+45448958 MS.gene99600:CDS
GTTTGGTCAGAAGTTCAAGA+GGG 0.655783 5.4:+45448754 MS.gene99600:CDS
CGGTGACAATCAAGGAACAT+GGG 0.656912 5.4:+45447967 MS.gene99600:CDS
ACAATTCTTCCAATGCAGCA+AGG 0.659787 5.4:+45448541 MS.gene99600:CDS
CTGTGATGGTAGCTTTGAGA+GGG 0.662336 5.4:+45448959 MS.gene99600:CDS
TTAGCATAGAACCTAAGAAG+GGG 0.663933 5.4:-45444116 None:intergenic
ATGGTGGGTTCTGACATATG+TGG 0.665102 5.4:+45448046 MS.gene99600:CDS
ATTCTTCCAATGCAGCAAGG+TGG 0.666214 5.4:+45448544 MS.gene99600:CDS
AACGACGATGATCATATGGA+CGG 0.669594 5.4:+45447263 MS.gene99600:CDS
CAAATGGAACAGGACCAGGA+TGG 0.669712 5.4:+45447666 MS.gene99600:CDS
GGAGAGAATACACAACCACA+TGG 0.676026 5.4:+45444764 MS.gene99600:CDS
CATAGAAATGCTAAACTGTG+AGG 0.677071 5.4:-45443918 None:intergenic
AGTTATGGTGTATACCAAAG+GGG 0.677346 5.4:+45447413 MS.gene99600:CDS
TCGTTCCAGATCACATCGAG+CGG 0.689132 5.4:-45447245 None:intergenic
GTACGAGTTCATGAAAGCGA+CGG 0.689303 5.4:-45447559 None:intergenic
CACACCATCACATCAACAGG+CGG 0.689960 5.4:+45448460 MS.gene99600:CDS
GGATTCCATCAATGCAGATG+GGG 0.692287 5.4:+45447164 MS.gene99600:intron
TCCATTGAAGAAACCCCTGA+TGG 0.700898 5.4:+45444035 MS.gene99600:CDS
TGGTGAAAGTAAGACTGTGA+TGG 0.700931 5.4:+45448945 MS.gene99600:CDS
GAGAGAATACACAACCACAT+GGG 0.709781 5.4:+45444765 MS.gene99600:CDS
CATGTGCATTTGGAAGGTGA+AGG 0.717327 5.4:+45448919 MS.gene99600:CDS
TATGCTAGTGTCAAACAAGG+AGG 0.726500 5.4:+45448724 MS.gene99600:CDS
AAACTGTACCAACTACCGGG+AGG 0.768178 5.4:-45448424 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTGTATTAAATTAG+AGG - chr5.4:45445632-45445651 None:intergenic 10.0%
!! TTTATAATTGAAAATATTGA+TGG + chr5.4:45446573-45446592 MS.gene99600:intron 10.0%
!!! CAAATTTAAAATAAAAAAAG+TGG - chr5.4:45445608-45445627 None:intergenic 10.0%
!!! TTTACTTAATTTATCTATTT+TGG + chr5.4:45446689-45446708 MS.gene99600:intron 10.0%
!! AAAAACAAAAATATCAATCA+TGG + chr5.4:45445743-45445762 MS.gene99600:intron 15.0%
!! AAATGTTAAAAATGATATCA+CGG - chr5.4:45445815-45445834 None:intergenic 15.0%
!! AATCTAACAATTAACAAAAA+GGG - chr5.4:45445223-45445242 None:intergenic 15.0%
!! ATTTACTATCATATATTACT+TGG - chr5.4:45445575-45445594 None:intergenic 15.0%
!! ATTTGTCAATTATATGAAAA+AGG + chr5.4:45447025-45447044 MS.gene99600:intron 15.0%
!! TAATCTAACAATTAACAAAA+AGG - chr5.4:45445224-45445243 None:intergenic 15.0%
!! TTAATTGTTAGATTAAAAGA+AGG + chr5.4:45445229-45445248 MS.gene99600:intron 15.0%
!!! GAAAAATATCTTCATATTTT+TGG - chr5.4:45445868-45445887 None:intergenic 15.0%
!!! TTTGATTCTTTTATAAAGTT+TGG + chr5.4:45446053-45446072 MS.gene99600:intron 15.0%
!! AAAAAATAACTATGAGTCAT+TGG - chr5.4:45446001-45446020 None:intergenic 20.0%
!! AATGCTTAAATGATAAACTT+TGG + chr5.4:45445295-45445314 MS.gene99600:intron 20.0%
!! CAGTTGTATATAAAGTATAA+GGG - chr5.4:45444811-45444830 None:intergenic 20.0%
!! TCAGTTGTATATAAAGTATA+AGG - chr5.4:45444812-45444831 None:intergenic 20.0%
!! TCCAAAAATAATTAATCAGT+TGG + chr5.4:45445675-45445694 MS.gene99600:intron 20.0%
!!! AAGTTTGTTCTGTATTTTTT+AGG + chr5.4:45445775-45445794 MS.gene99600:intron 20.0%
!!! AATCTTAATGCTGATTTATA+TGG + chr5.4:45444845-45444864 MS.gene99600:CDS 20.0%
!!! AATGACTCATAGTTATTTTT+TGG + chr5.4:45446000-45446019 MS.gene99600:intron 20.0%
!!! ACCAACTGATTAATTATTTT+TGG - chr5.4:45445679-45445698 None:intergenic 20.0%
!!! ATGACTCATAGTTATTTTTT+GGG + chr5.4:45446001-45446020 MS.gene99600:intron 20.0%
!!! TAGGTAATTGAATACTTTTT+TGG + chr5.4:45446165-45446184 MS.gene99600:intron 20.0%
!!! TATTTTTTAGGATTCATGTA+AGG + chr5.4:45445787-45445806 MS.gene99600:intron 20.0%
!!! TTTTCACATTATTATCAGTA+TGG - chr5.4:45444257-45444276 None:intergenic 20.0%
! AACCAAAAAACCAAAATCTA+TGG + chr5.4:45444083-45444102 MS.gene99600:CDS 25.0%
! AACTATAAAGCAATACATGT+GGG + chr5.4:45446309-45446328 MS.gene99600:intron 25.0%
! ACCTGTATATTAATGTATGA+TGG + chr5.4:45446024-45446043 MS.gene99600:intron 25.0%
! AGTAATAATGAAAAACGTGT+AGG - chr5.4:45446359-45446378 None:intergenic 25.0%
! ATAGGTACAATTAACAACAT+TGG - chr5.4:45444388-45444407 None:intergenic 25.0%
! ATAGTTGCAACATTTCAAAA+AGG - chr5.4:45446295-45446314 None:intergenic 25.0%
! ATATCCACAATGTTGAATTT+CGG + chr5.4:45448007-45448026 MS.gene99600:CDS 25.0%
! ATCATTTAAGCATTCACATA+TGG - chr5.4:45445289-45445308 None:intergenic 25.0%
! ATCATTTCACACACAAAATA+TGG + chr5.4:45446203-45446222 MS.gene99600:intron 25.0%
! ATGTTGAATTTCGGTATATT+TGG + chr5.4:45448016-45448035 MS.gene99600:CDS 25.0%
! CCTGTATATTAATGTATGAT+GGG + chr5.4:45446025-45446044 MS.gene99600:intron 25.0%
! CTAACTGATATTCTTACTAT+TGG + chr5.4:45447135-45447154 MS.gene99600:intron 25.0%
! CTGTATATTAATGTATGATG+GGG + chr5.4:45446026-45446045 MS.gene99600:intron 25.0%
! TAATGTAATCTAACATGTCA+TGG + chr5.4:45444289-45444308 MS.gene99600:intron 25.0%
! TATATGGATCTGAGAAATAA+TGG + chr5.4:45444881-45444900 MS.gene99600:CDS 25.0%
! TATATTACTTGGTCTAAACT+CGG - chr5.4:45445564-45445583 None:intergenic 25.0%
! TATTCTTACTATTGGTATAC+AGG + chr5.4:45447143-45447162 MS.gene99600:intron 25.0%
! TCAGTCAAAAGAAAATCAAA+TGG + chr5.4:45444623-45444642 MS.gene99600:CDS 25.0%
! TGAAAACAAGTGAACTAAAT+GGG - chr5.4:45444685-45444704 None:intergenic 25.0%
! TGTATATTAATGTATGATGG+GGG + chr5.4:45446027-45446046 MS.gene99600:intron 25.0%
! TTCAGATGAAAATAGAAGAA+GGG - chr5.4:45443964-45443983 None:intergenic 25.0%
! TTGAAAACAAGTGAACTAAA+TGG - chr5.4:45444686-45444705 None:intergenic 25.0%
! TTGTTGAAATCTCAAGATAT+TGG - chr5.4:45444712-45444731 None:intergenic 25.0%
!! AACCTTTTTGCTAAAGTTTT+GGG + chr5.4:45446257-45446276 MS.gene99600:intron 25.0%
!! AATTTTACCCTTAAACACAA+TGG - chr5.4:45446540-45446559 None:intergenic 25.0%
!! TAGTTTAAGGTGTAAAGATA+TGG - chr5.4:45448244-45448263 None:intergenic 25.0%
!! TCTTTGACTTATAAGGTTAT+TGG + chr5.4:45444974-45444993 MS.gene99600:CDS 25.0%
!! TTATCATGAGAGAATTTTCA+TGG + chr5.4:45445953-45445972 MS.gene99600:intron 25.0%
!!! GTTTTGTTGTTGAATAGTAA+TGG + chr5.4:45444926-45444945 MS.gene99600:CDS 25.0%
!!! TTTGATTTTTACTTCTTCTC+TGG + chr5.4:45445004-45445023 MS.gene99600:CDS 25.0%
!!! TTTTGACTGAGAAACTAAAT+GGG - chr5.4:45444613-45444632 None:intergenic 25.0%
ACACAATCATAGATCTGAAA+AGG - chr5.4:45445909-45445928 None:intergenic 30.0%
AGATGCATCTTTATATGGTT+TGG + chr5.4:45444742-45444761 MS.gene99600:CDS 30.0%
AGGATTTGCCTAATTTAATG+GGG + chr5.4:45446822-45446841 MS.gene99600:intron 30.0%
ATACTTGATGAAAACATCGT+TGG - chr5.4:45447444-45447463 None:intergenic 30.0%
ATATTACTTGGTCTAAACTC+GGG - chr5.4:45445563-45445582 None:intergenic 30.0%
ATCAATCAATCACTAAGATG+TGG + chr5.4:45446513-45446532 MS.gene99600:intron 30.0%
ATCATGCTTCAAATGCAAAA+AGG + chr5.4:45447071-45447090 MS.gene99600:intron 30.0%
CAACTATAAAGCAATACATG+TGG + chr5.4:45446308-45446327 MS.gene99600:intron 30.0%
CAGGATTTGCCTAATTTAAT+GGG + chr5.4:45446821-45446840 MS.gene99600:intron 30.0%
CATACAATCAAGTAAACATG+AGG + chr5.4:45446856-45446875 MS.gene99600:intron 30.0%
CCATATAAAGATGCATCTTT+AGG - chr5.4:45444740-45444759 None:intergenic 30.0%
CCCATCATACATTAATATAC+AGG - chr5.4:45446028-45446047 None:intergenic 30.0%
CCTAAAGATGCATCTTTATA+TGG + chr5.4:45444737-45444756 MS.gene99600:CDS 30.0%
CTGTTATGTGTACTCTTAAT+CGG - chr5.4:45444439-45444458 None:intergenic 30.0%
CTTCAGATGAAAATAGAAGA+AGG - chr5.4:45443965-45443984 None:intergenic 30.0%
GACATTAAAAATCTTCCACA+TGG - chr5.4:45446455-45446474 None:intergenic 30.0%
GATCAGTATACTACTTTGAT+TGG + chr5.4:45445049-45445068 MS.gene99600:CDS 30.0%
GATGCATCTTTATATGGTTT+GGG + chr5.4:45444743-45444762 MS.gene99600:CDS 30.0%
GATGCATTGTGATAAACTAT+TGG + chr5.4:45445368-45445387 MS.gene99600:intron 30.0%
GGATATAATTTAATCCCATG+TGG - chr5.4:45444782-45444801 None:intergenic 30.0%
TAAAGATAAGCTTCCTTTGT+TGG + chr5.4:45446478-45446497 MS.gene99600:intron 30.0%
TAAATATAACCTCTCTCCTT+AGG - chr5.4:45446397-45446416 None:intergenic 30.0%
TATAAAGTATAAGGGTCACT+TGG - chr5.4:45444803-45444822 None:intergenic 30.0%
TATACCGAAATTCAACATTG+TGG - chr5.4:45448014-45448033 None:intergenic 30.0%
TATGATGCTCATAGTATCTA+TGG + chr5.4:45447830-45447849 MS.gene99600:CDS 30.0%
TCATGCTTCAAATGCAAAAA+GGG + chr5.4:45447072-45447091 MS.gene99600:intron 30.0%
TCTATGATTGTGTAATACAG+TGG + chr5.4:45445916-45445935 MS.gene99600:intron 30.0%
TGAAATGATATCATTCCATG+TGG - chr5.4:45446192-45446211 None:intergenic 30.0%
TTAAAAATCTTCCACATGGT+TGG - chr5.4:45446451-45446470 None:intergenic 30.0%
TTCAAGAAGTTTAGAAGCTT+TGG - chr5.4:45447329-45447348 None:intergenic 30.0%
TTCTTACATGACCAATGTTA+AGG - chr5.4:45445511-45445530 None:intergenic 30.0%
TTGACTTATAAGGTTATTGG+TGG + chr5.4:45444977-45444996 MS.gene99600:CDS 30.0%
TTGCATGATCTCTTGAAAAT+GGG - chr5.4:45448132-45448151 None:intergenic 30.0%
TTTACCAGAACAGAAATTTG+AGG - chr5.4:45447618-45447637 None:intergenic 30.0%
TTTCTCAGATCCATATACAT+AGG - chr5.4:45444878-45444897 None:intergenic 30.0%
TTTGCATGATCTCTTGAAAA+TGG - chr5.4:45448133-45448152 None:intergenic 30.0%
! ACAAATACACTGATTACAGT+TGG - chr5.4:45446717-45446736 None:intergenic 30.0%
! AGGAACTTCTTTGACTTATA+AGG + chr5.4:45444967-45444986 MS.gene99600:CDS 30.0%
! AGTTCTTTTATCAAAGCTTC+AGG - chr5.4:45447100-45447119 None:intergenic 30.0%
! ATTGATTCCATTTCTGTGTT+GGG + chr5.4:45448805-45448824 MS.gene99600:CDS 30.0%
! CAACCTTTTTGCTAAAGTTT+TGG + chr5.4:45446256-45446275 MS.gene99600:intron 30.0%
! GATACTATCAAGATCTTTTC+TGG + chr5.4:45446120-45446139 MS.gene99600:intron 30.0%
! GATGTTTTCATCAAGTATGA+AGG + chr5.4:45447446-45447465 MS.gene99600:CDS 30.0%
! GGAATGGATGTGTTTTATAA+AGG + chr5.4:45444947-45444966 MS.gene99600:CDS 30.0%
! GGTAAATTTGCTTTAGACAA+AGG + chr5.4:45448775-45448794 MS.gene99600:CDS 30.0%
! GTTGTTGAATAGTAATGGAA+TGG + chr5.4:45444931-45444950 MS.gene99600:CDS 30.0%
! GTTTTTATTATTAGTGCCAG+CGG - chr5.4:45445729-45445748 None:intergenic 30.0%
! TCTTTCTATTTTGCTACCTA+AGG + chr5.4:45446378-45446397 MS.gene99600:intron 30.0%
! TGATTTTCTCAATCCAAAGA+CGG + chr5.4:45447514-45447533 MS.gene99600:CDS 30.0%
! TTTTTATTATTAGTGCCAGC+GGG - chr5.4:45445728-45445747 None:intergenic 30.0%
!! AAGTTGAAGTTGAGTTGAAA+AGG - chr5.4:45444655-45444674 None:intergenic 30.0%
!! AATACTCTGAGACTTCAATA+GGG - chr5.4:45444556-45444575 None:intergenic 30.0%
!! AGTTGAAGTTGAGTTGAAAA+GGG - chr5.4:45444654-45444673 None:intergenic 30.0%
!! CTTTTGACTGAGAAACTAAA+TGG - chr5.4:45444614-45444633 None:intergenic 30.0%
!! TATTGATTCCATTTCTGTGT+TGG + chr5.4:45448804-45448823 MS.gene99600:CDS 30.0%
!!! AGACTTCAATAGGGTTTTTT+TGG - chr5.4:45444547-45444566 None:intergenic 30.0%
!!! GTTTTTTTGGAACTTTCCTA+AGG - chr5.4:45444534-45444553 None:intergenic 30.0%
!!! TGGTTTTTTGGTTAAGTTGA+AGG - chr5.4:45444076-45444095 None:intergenic 30.0%
!!! TGTACCTATTTGTTTTTTGC+AGG + chr5.4:45444399-45444418 MS.gene99600:intron 30.0%
!!! TTCTTTTTTTGAGATGTGTG+TGG + chr5.4:45444163-45444182 MS.gene99600:intron 30.0%
AAGAACACGATATGTCCAAA+TGG + chr5.4:45447650-45447669 MS.gene99600:CDS 35.0%
AAGACAAGAGCTTTACCAAT+GGG + chr5.4:45448165-45448184 MS.gene99600:CDS 35.0%
AAGGAACATGGGAGAATTTA+AGG + chr5.4:45447978-45447997 MS.gene99600:CDS 35.0%
AAGTTGAAGGAGACCAATAA+GGG - chr5.4:45444063-45444082 None:intergenic 35.0%
AATTTAATGGGGGAGAAAGA+TGG + chr5.4:45446833-45446852 MS.gene99600:intron 35.0%
ACTTAGCATAGAACCTAAGA+AGG - chr5.4:45444121-45444140 None:intergenic 35.0%
AGAACATCACCAAAACAAGA+TGG + chr5.4:45447708-45447727 MS.gene99600:CDS 35.0%
AGATGCAAACAAGCAAAGAT+GGG + chr5.4:45444457-45444476 MS.gene99600:CDS 35.0%
AGTTATGGTGTATACCAAAG+GGG + chr5.4:45447413-45447432 MS.gene99600:CDS 35.0%
ATCAGTTGTTGAAGATGTTG+TGG + chr5.4:45447199-45447218 MS.gene99600:CDS 35.0%
ATCATACCAAAAGCCCAATA+AGG - chr5.4:45445091-45445110 None:intergenic 35.0%
ATCTAATCCCAACACAGAAA+TGG - chr5.4:45448815-45448834 None:intergenic 35.0%
ATGGATCTGAGAAATAATGG+TGG + chr5.4:45444884-45444903 MS.gene99600:CDS 35.0%
ATGTCATGGTCGTATCATAT+CGG + chr5.4:45444303-45444322 MS.gene99600:intron 35.0%
ATGTGGTCCATTGTGTTTAA+GGG + chr5.4:45446530-45446549 MS.gene99600:intron 35.0%
ATTGGTAAAGCTCTTGTCTT+GGG - chr5.4:45448165-45448184 None:intergenic 35.0%
ATTTCTGTGTTGGGATTAGA+TGG + chr5.4:45448814-45448833 MS.gene99600:CDS 35.0%
CAGTTATGGTGTATACCAAA+GGG + chr5.4:45447412-45447431 MS.gene99600:CDS 35.0%
CATAGAAATGCTAAACTGTG+AGG - chr5.4:45443921-45443940 None:intergenic 35.0%
CATGCCTGCAAAAAACAAAT+AGG - chr5.4:45444406-45444425 None:intergenic 35.0%
CCAATGTTAAGGTGTAATGA+TGG - chr5.4:45445500-45445519 None:intergenic 35.0%
CCATCATTACACCTTAACAT+TGG + chr5.4:45445497-45445516 MS.gene99600:intron 35.0%
CCTTACAAGATAAATGCTTC+TGG + chr5.4:45447740-45447759 MS.gene99600:CDS 35.0%
CTATATGCTAGTGTCAAACA+AGG + chr5.4:45448721-45448740 MS.gene99600:CDS 35.0%
CTATTGCATAGTTCTTCAGT+TGG - chr5.4:45448085-45448104 None:intergenic 35.0%
CTGAAGAACTATGCAATAGA+TGG + chr5.4:45448086-45448105 MS.gene99600:CDS 35.0%
CTGTCACTGTTTGTTTGATT+TGG + chr5.4:45446098-45446117 MS.gene99600:intron 35.0%
CTTAGCATAGAACCTAAGAA+GGG - chr5.4:45444120-45444139 None:intergenic 35.0%
GAACATCACCAAAACAAGAT+GGG + chr5.4:45447709-45447728 MS.gene99600:CDS 35.0%
GACCCAAAACTTTAGCAAAA+AGG - chr5.4:45446262-45446281 None:intergenic 35.0%
GCAGCATTTGTGATAAACTA+TGG + chr5.4:45445317-45445336 MS.gene99600:intron 35.0%
GCAGGATTTGCCTAATTTAA+TGG + chr5.4:45446820-45446839 MS.gene99600:intron 35.0%
GCATGATGCATAAGAATCTA+AGG - chr5.4:45447058-45447077 None:intergenic 35.0%
GGATTTGCCTAATTTAATGG+GGG + chr5.4:45446823-45446842 MS.gene99600:intron 35.0%
GTAAAAACTTTGCCATGACA+TGG + chr5.4:45448998-45449017 MS.gene99600:CDS 35.0%
GTCTTTGGATTGAGAAAATC+AGG - chr5.4:45447515-45447534 None:intergenic 35.0%
TAACACTCAACAACAAAAGC+TGG - chr5.4:45446147-45446166 None:intergenic 35.0%
TACATTGTCATTATTGACCC+TGG + chr5.4:45447374-45447393 MS.gene99600:CDS 35.0%
TACTGATCAACCACATTCAA+AGG - chr5.4:45445037-45445056 None:intergenic 35.0%
TACTTCTGAACATGTGCATT+TGG + chr5.4:45448909-45448928 MS.gene99600:CDS 35.0%
TCAGTTAATGTCACCAACAA+AGG - chr5.4:45446494-45446513 None:intergenic 35.0%
TCTTTCTCCCCCATTAAATT+AGG - chr5.4:45446833-45446852 None:intergenic 35.0%
TGGATCTCATCCTATGTATA+TGG + chr5.4:45444865-45444884 MS.gene99600:CDS 35.0%
TGTTGTGGATAGTTACAAGA+AGG + chr5.4:45447214-45447233 MS.gene99600:CDS 35.0%
TTAGATGGAAAGCCACTAAT+TGG + chr5.4:45448865-45448884 MS.gene99600:CDS 35.0%
TTAGCATAGAACCTAAGAAG+GGG - chr5.4:45444119-45444138 None:intergenic 35.0%
TTGAACAAGATACACAGCAT+TGG + chr5.4:45447344-45447363 MS.gene99600:CDS 35.0%
TTTCCTAAGGTTTGTGGTAA+TGG - chr5.4:45444521-45444540 None:intergenic 35.0%
TTTGCCATGACATGGAAAAT+GGG + chr5.4:45449006-45449025 MS.gene99600:CDS 35.0%
TTTGGACATATCGTGTTCTT+TGG - chr5.4:45447650-45447669 None:intergenic 35.0%
! AAGAAAAGTGGTCTTGCAAT+TGG - chr5.4:45448289-45448308 None:intergenic 35.0%
! AAGCACTTTTGCGAAAATTG+GGG + chr5.4:45445259-45445278 MS.gene99600:intron 35.0%
! AATATCAGGGCCATAGATTT+TGG - chr5.4:45444096-45444115 None:intergenic 35.0%
! ATGGCAAAGTTTTTACCAAC+AGG - chr5.4:45448994-45449013 None:intergenic 35.0%
! ATTGAAGTCTCAGAGTATTC+AGG + chr5.4:45444557-45444576 MS.gene99600:CDS 35.0%
! GAAGCATTTATCTTGTAAGG+AGG - chr5.4:45447740-45447759 None:intergenic 35.0%
! GGATGTAGTTGAAAGTATAG+TGG - chr5.4:45445658-45445677 None:intergenic 35.0%
! TAAGTTGAAGGAGACCAATA+AGG - chr5.4:45444064-45444083 None:intergenic 35.0%
! TTTTATTATTAGTGCCAGCG+GGG - chr5.4:45445727-45445746 None:intergenic 35.0%
!! ATATTTGGTGTTCCAATGGT+GGG + chr5.4:45448031-45448050 MS.gene99600:CDS 35.0%
!! ATTGGTGTTAACTCCAGTTA+TGG + chr5.4:45447398-45447417 MS.gene99600:CDS 35.0%
!! CCAGAAGCATTTATCTTGTA+AGG - chr5.4:45447743-45447762 None:intergenic 35.0%
!! CGTAACATTTGGTGTAAGAT+GGG - chr5.4:45448318-45448337 None:intergenic 35.0%
!! GAAGCACTTTTGCGAAAATT+GGG + chr5.4:45445258-45445277 MS.gene99600:intron 35.0%
!! GAATACTCTGAGACTTCAAT+AGG - chr5.4:45444557-45444576 None:intergenic 35.0%
!! GCTATTGTTTTGTATCCGAT+TGG - chr5.4:45447776-45447795 None:intergenic 35.0%
!! TATATTTGGTGTTCCAATGG+TGG + chr5.4:45448030-45448049 MS.gene99600:CDS 35.0%
!! TCAGAAGTGTTAGTACTACA+TGG + chr5.4:45444351-45444370 MS.gene99600:intron 35.0%
!! TCGTAACATTTGGTGTAAGA+TGG - chr5.4:45448319-45448338 None:intergenic 35.0%
!! TGCAATAGATGGATTGAAGT+TGG + chr5.4:45448097-45448116 MS.gene99600:CDS 35.0%
!!! AAAGGCCTTTTATTTTGTCG+CGG + chr5.4:45447903-45447922 MS.gene99600:CDS 35.0%
!!! AGAAGCACTTTTGCGAAAAT+TGG + chr5.4:45445257-45445276 MS.gene99600:intron 35.0%
!!! AGCTTTTGTTGTTGAGTGTT+AGG + chr5.4:45446146-45446165 MS.gene99600:intron 35.0%
!!! GAATACTTTTTTGGTCCACA+TGG + chr5.4:45446174-45446193 MS.gene99600:intron 35.0%
!!! GGCCATAGATTTTGGTTTTT+TGG - chr5.4:45444088-45444107 None:intergenic 35.0%
AAATATGCTGCACATTGGAC+CGG + chr5.4:45447947-45447966 MS.gene99600:CDS 40.0%
AACATGCGCTTCGTAGTTTA+AGG - chr5.4:45448257-45448276 None:intergenic 40.0%
AACCTAAGAAGGGGAATATC+AGG - chr5.4:45444110-45444129 None:intergenic 40.0%
AACGACGATGATCATATGGA+CGG + chr5.4:45447263-45447282 MS.gene99600:CDS 40.0%
AAGCAGTCTCATGATATCTC+CGG + chr5.4:45448363-45448382 MS.gene99600:CDS 40.0%
AATGTAACAACGAGCGTGAA+GGG - chr5.4:45448598-45448617 None:intergenic 40.0%
ACAATTCTTCCAATGCAGCA+AGG + chr5.4:45448541-45448560 MS.gene99600:CDS 40.0%
ACACTTGACAAGCCAATTAG+TGG - chr5.4:45448880-45448899 None:intergenic 40.0%
ACCTAAGAAGGGGAATATCA+GGG - chr5.4:45444109-45444128 None:intergenic 40.0%
ACGATATGTCCAAATGGAAC+AGG + chr5.4:45447656-45447675 MS.gene99600:CDS 40.0%
ACTAGTGCAACCCACTATAA+CGG + chr5.4:45447797-45447816 MS.gene99600:CDS 40.0%
AGGAAACAACGCTTTCACTT+GGG - chr5.4:45448407-45448426 None:intergenic 40.0%
AGGATTCCATCAATGCAGAT+GGG + chr5.4:45447163-45447182 MS.gene99600:intron 40.0%
AGGGTAGTTCTTTGGATTCA+AGG - chr5.4:45447303-45447322 None:intergenic 40.0%
AGTAAACTGTACCAACTACC+GGG - chr5.4:45448430-45448449 None:intergenic 40.0%
AGTTTGGTCAGAAGTTCAAG+AGG + chr5.4:45448753-45448772 MS.gene99600:CDS 40.0%
ATGTAAGAACCAGTTGTTGC+AGG + chr5.4:45445522-45445541 MS.gene99600:intron 40.0%
ATTGAGCTACTGAATCCCAT+TGG - chr5.4:45448183-45448202 None:intergenic 40.0%
CAAGACAAGAGCTTTACCAA+TGG + chr5.4:45448164-45448183 MS.gene99600:CDS 40.0%
CAGATGCAAACAAGCAAAGA+TGG + chr5.4:45444456-45444475 MS.gene99600:CDS 40.0%
CATAGTTCTTCAGTTGGTTG+TGG - chr5.4:45448079-45448098 None:intergenic 40.0%
CATCAGAAGGAGATGCTAAA+GGG + chr5.4:45448629-45448648 MS.gene99600:CDS 40.0%
CATTGGTAAAGCTCTTGTCT+TGG - chr5.4:45448166-45448185 None:intergenic 40.0%
CATTTGGAAGGTGAAGGAAA+TGG + chr5.4:45448925-45448944 MS.gene99600:CDS 40.0%
CCAGAAATGAAGCTTGGAAA+CGG + chr5.4:45448679-45448698 MS.gene99600:CDS 40.0%
CCAGTTATGGTGTATACCAA+AGG + chr5.4:45447411-45447430 MS.gene99600:CDS 40.0%
CCTTTGGTATACACCATAAC+TGG - chr5.4:45447414-45447433 None:intergenic 40.0%
CTTCGTTCATGTCAATCCAT+AGG - chr5.4:45447595-45447614 None:intergenic 40.0%
CTTTGCCATGACATGGAAAA+TGG + chr5.4:45449005-45449024 MS.gene99600:CDS 40.0%
GAACTTCCAGAAATGAAGCT+TGG + chr5.4:45448673-45448692 MS.gene99600:CDS 40.0%
GAAGCCTCAAATTTCTGTTC+TGG + chr5.4:45447611-45447630 MS.gene99600:CDS 40.0%
GAGAGAATACACAACCACAT+GGG + chr5.4:45444765-45444784 MS.gene99600:CDS 40.0%
GAGTAAACTGTACCAACTAC+CGG - chr5.4:45448431-45448450 None:intergenic 40.0%
GATGGGAAAGTGAAGAAAAG+TGG - chr5.4:45448301-45448320 None:intergenic 40.0%
GATGTGGTCCATTGTGTTTA+AGG + chr5.4:45446529-45446548 MS.gene99600:intron 40.0%
GTAGACCGCGACAAAATAAA+AGG - chr5.4:45447911-45447930 None:intergenic 40.0%
GTATGAAGGTGAACCTTTCT+TGG + chr5.4:45447460-45447479 MS.gene99600:CDS 40.0%
GTCATTATTGACCCTGGAAT+TGG + chr5.4:45447380-45447399 MS.gene99600:CDS 40.0%
GTTGGTACAGTTTACTCGAT+TGG + chr5.4:45448434-45448453 MS.gene99600:CDS 40.0%
GTTGTATCCGACATTAGTGT+CGG - chr5.4:45444224-45444243 None:intergenic 40.0%
GTTTGGTCAGAAGTTCAAGA+GGG + chr5.4:45448754-45448773 MS.gene99600:CDS 40.0%
TATGCTAGTGTCAAACAAGG+AGG + chr5.4:45448724-45448743 MS.gene99600:CDS 40.0%
TCAACCACATTCAAAGGAGT+TGG - chr5.4:45445031-45445050 None:intergenic 40.0%
TCAATCCAAAGACGGTATCT+TGG + chr5.4:45447522-45447541 MS.gene99600:CDS 40.0%
TCTCTTGGGATAAGGTTGTA+TGG - chr5.4:45444488-45444507 None:intergenic 40.0%
TCTGAACATGTGCATTTGGA+AGG + chr5.4:45448913-45448932 MS.gene99600:CDS 40.0%
TGAAGCTACTTCTTCCTCAA+AGG + chr5.4:45443980-45443999 MS.gene99600:CDS 40.0%
TGGAACTTTCCTAAGGTTTG+TGG - chr5.4:45444527-45444546 None:intergenic 40.0%
TGGAGTTAACACCAATTCCA+GGG - chr5.4:45447394-45447413 None:intergenic 40.0%
TGGTGAAAGTAAGACTGTGA+TGG + chr5.4:45448945-45448964 MS.gene99600:CDS 40.0%
TTCTTGGACTTGAAGGCAAA+AGG + chr5.4:45447885-45447904 MS.gene99600:CDS 40.0%
TTGGTAAAGCTCTTGTCTTG+GGG - chr5.4:45448164-45448183 None:intergenic 40.0%
! AACAAGGAGGTGTGAAAGTT+TGG + chr5.4:45448737-45448756 MS.gene99600:CDS 40.0%
! ATTTTGCTACCTAAGGAGAG+AGG + chr5.4:45446385-45446404 MS.gene99600:intron 40.0%
! CTGAAAAGGCTTTGTCTCTT+TGG - chr5.4:45445895-45445914 None:intergenic 40.0%
! GTCAGCACTCAGTTTTTACT+CGG + chr5.4:45448340-45448359 MS.gene99600:CDS 40.0%
! GTTTTATAGCACCAACCATG+TGG + chr5.4:45446437-45446456 MS.gene99600:intron 40.0%
! GTTTTTCCTTGTTCAAGCAC+CGG - chr5.4:45448385-45448404 None:intergenic 40.0%
! TCATCCCATTTTCCATGTCA+TGG - chr5.4:45449013-45449032 None:intergenic 40.0%
! TCTGGAATACAAGCTCCAAT+CGG + chr5.4:45447758-45447777 MS.gene99600:CDS 40.0%
! TTGGGATTAGATGGAAGTGT+TGG + chr5.4:45448823-45448842 MS.gene99600:CDS 40.0%
!! AAGTTTAGAAGCTTTGGACG+AGG - chr5.4:45447323-45447342 None:intergenic 40.0%
!! ACGATAGCCTTGACCAATTT+TGG - chr5.4:45444009-45444028 None:intergenic 40.0%
!! AGTGCTGACATCGTAACATT+TGG - chr5.4:45448329-45448348 None:intergenic 40.0%
!! AGTTTAGAAGCTTTGGACGA+GGG - chr5.4:45447322-45447341 None:intergenic 40.0%
!! ATAGCCTTGACCAATTTTGG+TGG - chr5.4:45444006-45444025 None:intergenic 40.0%
!! CGGTATATTTGGTGTTCCAA+TGG + chr5.4:45448027-45448046 MS.gene99600:CDS 40.0%
AAATTCCGCTCGATGTGATC+TGG + chr5.4:45447240-45447259 MS.gene99600:CDS 45.0%
AACCCACTATAACGGTGTCT+TGG + chr5.4:45447805-45447824 MS.gene99600:CDS 45.0%
AACCTTTCTTGGCTCAAGTG+TGG + chr5.4:45447471-45447490 MS.gene99600:CDS 45.0%
AACTACGAAGCGCATGTTAG+TGG + chr5.4:45448259-45448278 MS.gene99600:CDS 45.0%
AAGACCCTTGTGAGTTGCAA+CGG - chr5.4:45447867-45447886 None:intergenic 45.0%
AAGGCCACCAAAATTGGTCA+AGG + chr5.4:45443999-45444018 MS.gene99600:CDS 45.0%
AAGGGTCTTCTTGGACTTGA+AGG + chr5.4:45447878-45447897 MS.gene99600:CDS 45.0%
ACAGCCTTGATCATTTGGAC+CGG + chr5.4:45446766-45446785 MS.gene99600:intron 45.0%
ACCAGGATGGATATGTTGCT+TGG + chr5.4:45447679-45447698 MS.gene99600:CDS 45.0%
ACCATCAGGGGTTTCTTCAA+TGG - chr5.4:45444039-45444058 None:intergenic 45.0%
ACTCACACCATCACATCAAC+AGG + chr5.4:45448457-45448476 MS.gene99600:CDS 45.0%
ACTCCAAGACACCGTTATAG+TGG - chr5.4:45447811-45447830 None:intergenic 45.0%
ACTTGATGCACCTCTTCATG+TGG + chr5.4:45448495-45448514 MS.gene99600:CDS 45.0%
ATATCTCCGGTGCTTGAACA+AGG + chr5.4:45448376-45448395 MS.gene99600:CDS 45.0%
ATCAATCCACCTTGCTGCAT+TGG - chr5.4:45448553-45448572 None:intergenic 45.0%
ATCCAAAGACGGTATCTTGG+TGG + chr5.4:45447525-45447544 MS.gene99600:CDS 45.0%
ATTCTTCCAATGCAGCAAGG+TGG + chr5.4:45448544-45448563 MS.gene99600:CDS 45.0%
CAATCCGTTGCAACTCACAA+GGG + chr5.4:45447860-45447879 MS.gene99600:CDS 45.0%
CAGGATTCCATCAATGCAGA+TGG + chr5.4:45447162-45447181 MS.gene99600:intron 45.0%
CATATGTCAGAACCCACCAT+TGG - chr5.4:45448046-45448065 None:intergenic 45.0%
CATGAACTCGTACCTGTTGA+CGG + chr5.4:45447569-45447588 MS.gene99600:CDS 45.0%
CATGTGCATTTGGAAGGTGA+AGG + chr5.4:45448919-45448938 MS.gene99600:CDS 45.0%
CCACCATTACCACAAACCTT+AGG + chr5.4:45444515-45444534 MS.gene99600:CDS 45.0%
CCATGTTCCTTGATTGTCAC+CGG - chr5.4:45447969-45447988 None:intergenic 45.0%
CCGTTTCCAAGCTTCATTTC+TGG - chr5.4:45448682-45448701 None:intergenic 45.0%
CGGTGACAATCAAGGAACAT+GGG + chr5.4:45447967-45447986 MS.gene99600:CDS 45.0%
CTCCAAGACACCGTTATAGT+GGG - chr5.4:45447810-45447829 None:intergenic 45.0%
CTGGAACGACGATGATCATA+TGG + chr5.4:45447259-45447278 MS.gene99600:CDS 45.0%
CTGGAGTTAACACCAATTCC+AGG - chr5.4:45447395-45447414 None:intergenic 45.0%
GAATGTAACAACGAGCGTGA+AGG - chr5.4:45448599-45448618 None:intergenic 45.0%
GAGGAAACAACGCTTTCACT+TGG - chr5.4:45448408-45448427 None:intergenic 45.0%
GATATCCCCATCTGCATTGA+TGG - chr5.4:45447172-45447191 None:intergenic 45.0%
GCATCAGAAGGAGATGCTAA+AGG + chr5.4:45448628-45448647 MS.gene99600:CDS 45.0%
GGAGAGAATACACAACCACA+TGG + chr5.4:45444764-45444783 MS.gene99600:CDS 45.0%
GGATTCCATCAATGCAGATG+GGG + chr5.4:45447164-45447183 MS.gene99600:intron 45.0%
GTACGAGTTCATGAAAGCGA+CGG - chr5.4:45447562-45447581 None:intergenic 45.0%
GTCCAAATGATCAAGGCTGT+GGG - chr5.4:45446766-45446785 None:intergenic 45.0%
GTGGCTTCACTTGAGTTAGA+TGG + chr5.4:45448850-45448869 MS.gene99600:CDS 45.0%
GTGGTTGTTCTCTTGGGATA+AGG - chr5.4:45444496-45444515 None:intergenic 45.0%
GTTGTTGCAGGTTCGATACT+CGG + chr5.4:45445534-45445553 MS.gene99600:intron 45.0%
TCCAAAGACGGTATCTTGGT+GGG + chr5.4:45447526-45447545 MS.gene99600:CDS 45.0%
TCCAAATGATCAAGGCTGTG+GGG - chr5.4:45446765-45446784 None:intergenic 45.0%
TCCAAGCAACATATCCATCC+TGG - chr5.4:45447683-45447702 None:intergenic 45.0%
TCCATTGAAGAAACCCCTGA+TGG + chr5.4:45444035-45444054 MS.gene99600:CDS 45.0%
TCCTCAAAGGCCACCAAAAT+TGG + chr5.4:45443993-45444012 MS.gene99600:CDS 45.0%
TGCACATTCACCACATGAAG+AGG - chr5.4:45448508-45448527 None:intergenic 45.0%
TGGACCAACTCCTTTGAATG+TGG + chr5.4:45445024-45445043 MS.gene99600:CDS 45.0%
TGGTCGTATCATATCGGTGT+TGG + chr5.4:45444309-45444328 MS.gene99600:intron 45.0%
TTGTCGCGGTCTACTTATGT+TGG + chr5.4:45447917-45447936 MS.gene99600:CDS 45.0%
TTTGGACGAGGGTAGTTCTT+TGG - chr5.4:45447311-45447330 None:intergenic 45.0%
! ACCTGCTGCTATGCCTTATT+GGG + chr5.4:45445075-45445094 MS.gene99600:CDS 45.0%
! AGTATCGAACCTGCAACAAC+TGG - chr5.4:45445534-45445553 None:intergenic 45.0%
! GCGGTCTACTTATGTTGGTT+CGG + chr5.4:45447922-45447941 MS.gene99600:CDS 45.0%
! TGATGCACCGACACTAATGT+CGG + chr5.4:45444214-45444233 MS.gene99600:intron 45.0%
!! AAGGTTTGTGGTAATGGTGG+TGG - chr5.4:45444515-45444534 None:intergenic 45.0%
!! AATGGTGGTGGTTGTTCTCT+TGG - chr5.4:45444503-45444522 None:intergenic 45.0%
!! ACCAATTTTGGTGGCCTTTG+AGG - chr5.4:45443997-45444016 None:intergenic 45.0%
!! ACTGTGATGGTAGCTTTGAG+AGG + chr5.4:45448958-45448977 MS.gene99600:CDS 45.0%
!! AGGATCGTCCCATCTTGTTT+TGG - chr5.4:45447720-45447739 None:intergenic 45.0%
!! ATGGTGGGTTCTGACATATG+TGG + chr5.4:45448046-45448065 MS.gene99600:CDS 45.0%
!! ATGGTGGTGGTTGTTCTCTT+GGG - chr5.4:45444502-45444521 None:intergenic 45.0%
!! CCTAAGGTTTGTGGTAATGG+TGG - chr5.4:45444518-45444537 None:intergenic 45.0%
!! CGGTCTACTTATGTTGGTTC+GGG + chr5.4:45447923-45447942 MS.gene99600:CDS 45.0%
!! CTGTGATGGTAGCTTTGAGA+GGG + chr5.4:45448959-45448978 MS.gene99600:CDS 45.0%
!! GCAAGGTGGATTGATCTCTA+AGG + chr5.4:45448558-45448577 MS.gene99600:CDS 45.0%
!! GCTATGCCTTATTGGGCTTT+TGG + chr5.4:45445082-45445101 MS.gene99600:CDS 45.0%
!! GTTATAGTGGGTTGCACTAG+TGG - chr5.4:45447798-45447817 None:intergenic 45.0%
!! ATTAAAAATTCAATATAAAA+TGG - chr5.4:45445345-45445364 None:intergenic 5.0%
!!! TTTATATTTGATTATATTTT+TGG + chr5.4:45445153-45445172 MS.gene99600:intron 5.0%
AAACTGTACCAACTACCGGG+AGG - chr5.4:45448427-45448446 None:intergenic 50.0%
ACAGCCGGTCCAAATGATCA+AGG - chr5.4:45446773-45446792 None:intergenic 50.0%
ACCCACCAAGATACCGTCTT+TGG - chr5.4:45447530-45447549 None:intergenic 50.0%
AGAGGGTTGAGCATTCCTGT+TGG + chr5.4:45448976-45448995 MS.gene99600:CDS 50.0%
AGTTCCGCCTGTTGATGTGA+TGG - chr5.4:45448467-45448486 None:intergenic 50.0%
CAAATGGAACAGGACCAGGA+TGG + chr5.4:45447666-45447685 MS.gene99600:CDS 50.0%
CACACCATCACATCAACAGG+CGG + chr5.4:45448460-45448479 MS.gene99600:CDS 50.0%
CACGCTCGTTGTTACATTCC+CGG + chr5.4:45448600-45448619 MS.gene99600:CDS 50.0%
CATCCTGGTCCTGTTCCATT+TGG - chr5.4:45447668-45447687 None:intergenic 50.0%
CATTGGACCGGTGACAATCA+AGG + chr5.4:45447959-45447978 MS.gene99600:CDS 50.0%
CCGGTGACAATCAAGGAACA+TGG + chr5.4:45447966-45447985 MS.gene99600:CDS 50.0%
CGGGCAAATATGCTGCACAT+TGG + chr5.4:45447942-45447961 MS.gene99600:CDS 50.0%
GACCTGCTGCTATGCCTTAT+TGG + chr5.4:45445074-45445093 MS.gene99600:CDS 50.0%
GCAACTCACAAGGGTCTTCT+TGG + chr5.4:45447869-45447888 MS.gene99600:CDS 50.0%
GCAATCCGTTGCAACTCACA+AGG + chr5.4:45447859-45447878 MS.gene99600:CDS 50.0%
GCCCTGATATTCCCCTTCTT+AGG + chr5.4:45444105-45444124 MS.gene99600:CDS 50.0%
GGTCCAAATGATCAAGGCTG+TGG - chr5.4:45446767-45446786 None:intergenic 50.0%
TATTATTAGTGCCAGCGGGG+AGG - chr5.4:45445724-45445743 None:intergenic 50.0%
TCAATCCATAGGCCGTCAAC+AGG - chr5.4:45447584-45447603 None:intergenic 50.0%
TCCCCACAGCCTTGATCATT+TGG + chr5.4:45446761-45446780 MS.gene99600:intron 50.0%
TCGTTCCAGATCACATCGAG+CGG - chr5.4:45447248-45447267 None:intergenic 50.0%
TGATCATTTGGACCGGCTGT+GGG + chr5.4:45446773-45446792 MS.gene99600:intron 50.0%
TGTCCAAATGGAACAGGACC+AGG + chr5.4:45447662-45447681 MS.gene99600:CDS 50.0%
TTACTCCAACGAGTCCACCA+GGG + chr5.4:45446736-45446755 MS.gene99600:intron 50.0%
TTGATCATTTGGACCGGCTG+TGG + chr5.4:45446772-45446791 MS.gene99600:intron 50.0%
! CATCGTTGGCTAAACCCCTT+TGG - chr5.4:45447430-45447449 None:intergenic 50.0%
!! ACCAATAAGGGCACCATCAG+GGG - chr5.4:45444051-45444070 None:intergenic 50.0%
!! AGACCAATAAGGGCACCATC+AGG - chr5.4:45444053-45444072 None:intergenic 50.0%
!! AGATGGAAGTGTTGGAGCAG+TGG + chr5.4:45448831-45448850 MS.gene99600:CDS 50.0%
!! GACCAATAAGGGCACCATCA+GGG - chr5.4:45444052-45444071 None:intergenic 50.0%
!! GTGAAAGCGTTGTTTCCTCC+CGG + chr5.4:45448409-45448428 MS.gene99600:CDS 50.0%
AACAACGAGCGTGAAGGGTG+TGG - chr5.4:45448593-45448612 None:intergenic 55.0%
CTCGTTGTTACATTCCCGGC+TGG + chr5.4:45448604-45448623 MS.gene99600:CDS 55.0%
GCCCAATAAGGCATAGCAGC+AGG - chr5.4:45445079-45445098 None:intergenic 55.0%
GGCCACACTTGAGCCAAGAA+AGG - chr5.4:45447476-45447495 None:intergenic 55.0%
GTTACTCCAACGAGTCCACC+AGG + chr5.4:45446735-45446754 MS.gene99600:intron 55.0%
TCAGGAAAGTTTACCGCCCC+AGG - chr5.4:45447497-45447516 None:intergenic 55.0%
TCGTACCTGTTGACGGCCTA+TGG + chr5.4:45447576-45447595 MS.gene99600:CDS 55.0%
TCTCCTTCTGATGCACCAGC+CGG - chr5.4:45448622-45448641 None:intergenic 55.0%
TCTTGGCTCAAGTGTGGCCT+GGG + chr5.4:45447477-45447496 MS.gene99600:CDS 55.0%
TTCTTGGCTCAAGTGTGGCC+TGG + chr5.4:45447476-45447495 MS.gene99600:CDS 55.0%
! ACCCCTGATGGTGCCCTTAT+TGG + chr5.4:45444047-45444066 MS.gene99600:CDS 55.0%
! CGTTGTTTCCTCCCGGTAGT+TGG + chr5.4:45448416-45448435 MS.gene99600:CDS 55.0%
CTCCTTCTGATGCACCAGCC+GGG - chr5.4:45448621-45448640 None:intergenic 60.0%
CTTGGCTCAAGTGTGGCCTG+GGG + chr5.4:45447478-45447497 MS.gene99600:CDS 60.0%
TATTAGTGCCAGCGGGGAGG+TGG - chr5.4:45445721-45445740 None:intergenic 60.0%
TCAAGGCTGTGGGGATACCC+TGG - chr5.4:45446756-45446775 None:intergenic 60.0%
TCCTGCTCAATGAGCCGACC+CGG - chr5.4:45446806-45446825 None:intergenic 60.0%
TTAAGTGTCCACCTCCCCGC+TGG + chr5.4:45445710-45445729 MS.gene99600:intron 60.0%
TTCCCGGCTGGTGCATCAGA+AGG + chr5.4:45448616-45448635 MS.gene99600:CDS 60.0%
!! GGATACCCTGGTGGACTCGT+TGG - chr5.4:45446744-45446763 None:intergenic 60.0%
ACCGGCTGTGGGACTAACCC+CGG + chr5.4:45446784-45446803 MS.gene99600:intron 65.0%
AGGCTGTGGGGATACCCTGG+TGG - chr5.4:45446753-45446772 None:intergenic 65.0%
CCTGCTCAATGAGCCGACCC+GGG - chr5.4:45446805-45446824 None:intergenic 65.0%
CTGCTCAATGAGCCGACCCG+GGG - chr5.4:45446804-45446823 None:intergenic 65.0%
CTGTGGGACTAACCCCGGGT+CGG + chr5.4:45446789-45446808 MS.gene99600:intron 65.0%
CCGGCTGTGGGACTAACCCC+GGG + chr5.4:45446785-45446804 MS.gene99600:intron 70.0%
GGCTCAAGTGTGGCCTGGGG+CGG + chr5.4:45447481-45447500 MS.gene99600:CDS 70.0%
! CCCGGGTCGGCTCATTGAGC+AGG + chr5.4:45446802-45446821 MS.gene99600:intron 70.0%
!! CCCGGGGTTAGTCCCACAGC+CGG - chr5.4:45446788-45446807 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 45443909 45449032 45443909 ID=MS.gene99600
chr5.4 mRNA 45443909 45449032 45443909 ID=MS.gene99600.t1;Parent=MS.gene99600
chr5.4 exon 45443909 45444138 45443909 ID=MS.gene99600.t1.exon1;Parent=MS.gene99600.t1
chr5.4 CDS 45443909 45444138 45443909 ID=cds.MS.gene99600.t1;Parent=MS.gene99600.t1
chr5.4 exon 45444421 45445103 45444421 ID=MS.gene99600.t1.exon2;Parent=MS.gene99600.t1
chr5.4 CDS 45444421 45445103 45444421 ID=cds.MS.gene99600.t1;Parent=MS.gene99600.t1
chr5.4 exon 45447165 45449032 45447165 ID=MS.gene99600.t1.exon3;Parent=MS.gene99600.t1
chr5.4 CDS 45447165 45449032 45447165 ID=cds.MS.gene99600.t1;Parent=MS.gene99600.t1
Gene Sequence

>MS.gene99600

ATGGTTTATCCTCACAGTTTAGCATTTCTATGCTTCTCATCTTTTCTTCTAACCCTTCTTCTATTTTCATCTGAAGCTACTTCTTCCTCAAAGGCCACCAAAATTGGTCAAGGCTATCGTCTTGTATCCATTGAAGAAACCCCTGATGGTGCCCTTATTGGTCTCCTTCAACTTAACCAAAAAACCAAAATCTATGGCCCTGATATTCCCCTTCTTAGGTTCTATGCTAAGTAAGTACTAAAAAACACATTTAGTTCTTTTTTTGAGATGTGTGTGGAATTTTATGTTATTGTTTTGTTGTTTTATGATGCACCGACACTAATGTCGGATACAACACTGACACGTCCATACTGATAATAATGTGAAAAAAGTAATTACTTTAATGTAATCTAACATGTCATGGTCGTATCATATCGGTGTTGGACACTGAACACGCTTTCGATCAGAAGTGTTAGTACTACATGGATTTTGTTTCTCCAATGTTGTTAATTGTACCTATTTGTTTTTTGCAGGCATGAAACAGAGAACCGATTAAGAGTACACATAACAGATGCAAACAAGCAAAGATGGGAAGTACCATACAACCTTATCCCAAGAGAACAACCACCACCATTACCACAAACCTTAGGAAAGTTCCAAAAAAACCCTATTGAAGTCTCAGAGTATTCAGGTTCAGAGCTTCTATTCAGCTACATTTCAAACCCATTTAGTTTCTCAGTCAAAAGAAAATCAAATGGTGAAACCCTTTTCAACTCAACTTCAACTTCTTCAGACCCATTTAGTTCACTTGTTTTCAAAGACCAATATCTTGAGATTTCAACAAAATTACCTAAAGATGCATCTTTATATGGTTTGGGAGAGAATACACAACCACATGGGATTAAATTATATCCAAGTGACCCTTATACTTTATATACAACTGATATTTCAGCTATTAATCTTAATGCTGATTTATATGGATCTCATCCTATGTATATGGATCTGAGAAATAATGGTGGAAAAGCTTCTGCACATGCTGTTTTGTTGTTGAATAGTAATGGAATGGATGTGTTTTATAAAGGAACTTCTTTGACTTATAAGGTTATTGGTGGTGTTTTTGATTTTTACTTCTTCTCTGGACCAACTCCTTTGAATGTGGTTGATCAGTATACTACTTTGATTGGAAGACCTGCTGCTATGCCTTATTGGGCTTTTGGTATGATTCTTCACTTTTCACTTTACTCATTTATTTTTTATTTTATTTTTTTATATTTGATTATATTTTTGGTATGCAAGATATTAGTGTTAGTGACTTTGATTTTTGTGACATTGCCCTTTTTGTTAATTGTTAGATTAAAAGAAGGAAAAAAGAAGCACTTTTGCGAAAATTGGGGTTAACCATATGTGAATGCTTAAATGATAAACTTTGGCAGCATTTGTGATAAACTATGGCTCCATTTTATATTGAATTTTTAATTTTGATGCATTGTGATAAACTATTGGCTGCATTGTGACGACTAAGATTGATTAGCAATGTAAAAAATGTTTACAGCTACGATATAGATGAATTAAATAAATCATTGTTCTTTTTCAATAATATATGATAGTACCATCATTACACCTTAACATTGGTCATGTAAGAACCAGTTGTTGCAGGTTCGATACTCGGTATCCCGAGTTTAGACCAAGTAATATATGATAGTAAATTTTAGTGTAACCACTTTTTTTATTTTAAATTTGTCCTCTAATTTAATACAAATAAATTTACCACTATACTTTCAACTACATCCAAAAATAATTAATCAGTTGGTAGATGTGTCTATTAAGTGTCCACCTCCCCGCTGGCACTAATAATAAAAACAAAAATATCAATCATGGCATCTTGCTAAGTTTGTTCTGTATTTTTTAGGATTCATGTAAGGAACCGTGATATCATTTTTAACATTTTGTGCTACATTTTTAAAAATATTAAACATACCAAAAATATGAAGATATTTTTCAAAACCAAAGAGACAAAGCCTTTTCAGATCTATGATTGTGTAATACAGTGGCTTTCTTGATTTTTTTATCATGAGAGAATTTTCATGGTATGCAAAATACATTTGAGAATCCAATGACTCATAGTTATTTTTTGGGACCTGTATATTAATGTATGATGGGGGTGCTTTGATTCTTTTATAAAGTTTGGTTTTTCAATGTTTTTTTCGATTCTGTCACTGTTTGTTTGATTTGGATACTATCAAGATCTTTTCTGGTCCAGCTTTTGTTGTTGAGTGTTAGGTAATTGAATACTTTTTTGGTCCACATGGAATGATATCATTTCACACACAAAATATGGAAACTTAACTCTACAATATGAAAAATAATTCAACCTTTTTGCTAAAGTTTTGGGTCAAGAATTCTACCTTTTTGAAATGTTGCAACTATAAAGCAATACATGTGGGTCGTTGTCAAAGTTATTAACATTACCTACACGTTTTTCATTATTACTCTTTCTATTTTGCTACCTAAGGAGAGAGGTTATATTTAAGTTTGTTACAAATTGTGTTGTTTTATAGCACCAACCATGTGGAAGATTTTTAATGTCTTTTAAAGATAAGCTTCCTTTGTTGGTGACATTAACTGATCAATCAATCACTAAGATGTGGTCCATTGTGTTTAAGGGTAAAATTCAATTTTGAAAATTTTATAATTGAAAATATTGATGGAAAAAGAATATATAATTAAAAAATAACAATAAATTAAGAATAAAGCTTTATATTCTTATTAACAATACAAAATGTGCTTATTTTTCAAATAAATTTACTTAATTTATCTATTTTGGAACCAACTGTAATCAGTGTATTTGTTACTCCAACGAGTCCACCAGGGTATCCCCACAGCCTTGATCATTTGGACCGGCTGTGGGACTAACCCCGGGTCGGCTCATTGAGCAGGATTTGCCTAATTTAATGGGGGAGAAAGATGGCATACAATCAAGTAAACATGAGGTTAAAATGTAAAGACTCATTGTGCAAAAATGATGAAAGATTTTGTTTACACTCTTGAGTTTGCTCTTGAAATCTAAATCGTTTCAACACTCTTGAGTTTGTCTTAGATTTTCTGTAACTTTATCTACTTGTTAATGTTGCTACTTCATTTGTCAATTATATGAAAAAGGTTGATATCCTTAGATTCTTATGCATCATGCTTCAAATGCAAAAAGGGTACCTGAAGCTTTGATAAAAGAACTTTATGTTTTAAGTTTCTAACTGATATTCTTACTATTGGTATACAGGATTCCATCAATGCAGATGGGGATATCACAATCTATCAGTTGTTGAAGATGTTGTGGATAGTTACAAGAAGGCTCAAATTCCGCTCGATGTGATCTGGAACGACGATGATCATATGGACGGACACAAAGACTTCACCTTGAATCCAAAGAACTACCCTCGTCCAAAGCTTCTAAACTTCTTGAACAAGATACACAGCATTGGCATGAAATACATTGTCATTATTGACCCTGGAATTGGTGTTAACTCCAGTTATGGTGTATACCAAAGGGGTTTAGCCAACGATGTTTTCATCAAGTATGAAGGTGAACCTTTCTTGGCTCAAGTGTGGCCTGGGGCGGTAAACTTTCCTGATTTTCTCAATCCAAAGACGGTATCTTGGTGGGTTGATGAGATCCGTCGCTTTCATGAACTCGTACCTGTTGACGGCCTATGGATTGACATGAACGAAGCCTCAAATTTCTGTTCTGGTAAATGCAAAATTCCAAAGAACACGATATGTCCAAATGGAACAGGACCAGGATGGATATGTTGCTTGGATTGCAAGAACATCACCAAAACAAGATGGGACGATCCTCCTTACAAGATAAATGCTTCTGGAATACAAGCTCCAATCGGATACAAAACAATAGCCACTAGTGCAACCCACTATAACGGTGTCTTGGAGTATGATGCTCATAGTATCTATGGTTTCTCGCAATCCGTTGCAACTCACAAGGGTCTTCTTGGACTTGAAGGCAAAAGGCCTTTTATTTTGTCGCGGTCTACTTATGTTGGTTCGGGCAAATATGCTGCACATTGGACCGGTGACAATCAAGGAACATGGGAGAATTTAAGGTATTCAATATCCACAATGTTGAATTTCGGTATATTTGGTGTTCCAATGGTGGGTTCTGACATATGTGGATTTTATCCACAACCAACTGAAGAACTATGCAATAGATGGATTGAAGTTGGTGCTTTCTACCCATTTTCAAGAGATCATGCAAACTACTACTCCCCAAGACAAGAGCTTTACCAATGGGATTCAGTAGCTCAATCAGCTAGAAATGCTTTAGGTATAAGGTACAAGATTCTACCATATCTTTACACCTTAAACTACGAAGCGCATGTTAGTGGATCACCAATTGCAAGACCACTTTTCTTCACTTTCCCATCTTACACCAAATGTTACGATGTCAGCACTCAGTTTTTACTCGGAAGCAGTCTCATGATATCTCCGGTGCTTGAACAAGGAAAAACCCAAGTGAAAGCGTTGTTTCCTCCCGGTAGTTGGTACAGTTTACTCGATTGGACTCACACCATCACATCAACAGGCGGAACTTATGTTACACTTGATGCACCTCTTCATGTGGTGAATGTGCATTTATATCAGAACACAATTCTTCCAATGCAGCAAGGTGGATTGATCTCTAAGGATGCTCGAACCACACCCTTCACGCTCGTTGTTACATTCCCGGCTGGTGCATCAGAAGGAGATGCTAAAGGGACACTTTTCATTGACGACGATGAACTTCCAGAAATGAAGCTTGGAAACGGCTATTCGAGTTTTATCGATCTATATGCTAGTGTCAAACAAGGAGGTGTGAAAGTTTGGTCAGAAGTTCAAGAGGGTAAATTTGCTTTAGACAAAGGTTTGATTATTGATTCCATTTCTGTGTTGGGATTAGATGGAAGTGTTGGAGCAGTGGCTTCACTTGAGTTAGATGGAAAGCCACTAATTGGCTTGTCAAGTGTGAATGTTACTACTTCTGAACATGTGCATTTGGAAGGTGAAGGAAATGGTGAAAGTAAGACTGTGATGGTAGCTTTGAGAGGGTTGAGCATTCCTGTTGGTAAAAACTTTGCCATGACATGGAAAATGGGATGA

Protein sequence

>MS.gene99600.t1

MVYPHSLAFLCFSSFLLTLLLFSSEATSSSKATKIGQGYRLVSIEETPDGALIGLLQLNQKTKIYGPDIPLLRFYAKHETENRLRVHITDANKQRWEVPYNLIPREQPPPLPQTLGKFQKNPIEVSEYSGSELLFSYISNPFSFSVKRKSNGETLFNSTSTSSDPFSSLVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPSDPYTLYTTDISAINLNADLYGSHPMYMDLRNNGGKASAHAVLLLNSNGMDVFYKGTSLTYKVIGGVFDFYFFSGPTPLNVVDQYTTLIGRPAAMPYWAFGFHQCRWGYHNLSVVEDVVDSYKKAQIPLDVIWNDDDHMDGHKDFTLNPKNYPRPKLLNFLNKIHSIGMKYIVIIDPGIGVNSSYGVYQRGLANDVFIKYEGEPFLAQVWPGAVNFPDFLNPKTVSWWVDEIRRFHELVPVDGLWIDMNEASNFCSGKCKIPKNTICPNGTGPGWICCLDCKNITKTRWDDPPYKINASGIQAPIGYKTIATSATHYNGVLEYDAHSIYGFSQSVATHKGLLGLEGKRPFILSRSTYVGSGKYAAHWTGDNQGTWENLRYSISTMLNFGIFGVPMVGSDICGFYPQPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWDSVAQSARNALGIRYKILPYLYTLNYEAHVSGSPIARPLFFTFPSYTKCYDVSTQFLLGSSLMISPVLEQGKTQVKALFPPGSWYSLLDWTHTITSTGGTYVTLDAPLHVVNVHLYQNTILPMQQGGLISKDARTTPFTLVVTFPAGASEGDAKGTLFIDDDELPEMKLGNGYSSFIDLYASVKQGGVKVWSEVQEGKFALDKGLIIDSISVLGLDGSVGAVASLELDGKPLIGLSSVNVTTSEHVHLEGEGNGESKTVMVALRGLSIPVGKNFAMTWKMG