Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99621.t1 | XP_013448876.1 | 96.3 | 301 | 10 | 1 | 1 | 300 | 1 | 301 | 4.00E-166 | 594 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99621.t1 | Q09893 | 39.5 | 129 | 74 | 3 | 18 | 143 | 8 | 135 | 8.5e-16 | 85.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99621.t1 | I3S857 | 96.3 | 301 | 10 | 1 | 1 | 300 | 1 | 301 | 2.9e-166 | 594.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26907 | MS.gene99621 | PPI |
| MS.gene80067 | MS.gene99621 | PPI |
| MS.gene006477 | MS.gene99621 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99621.t1 | MTR_7g062150 | 96.346 | 301 | 10 | 1 | 1 | 300 | 1 | 301 | 0.0 | 602 |
| MS.gene99621.t1 | MTR_4g021800 | 84.158 | 303 | 38 | 4 | 1 | 300 | 1 | 296 | 0.0 | 501 |
| MS.gene99621.t1 | MTR_7g062150 | 95.652 | 230 | 9 | 1 | 1 | 229 | 1 | 230 | 1.46e-165 | 459 |
| MS.gene99621.t1 | MTR_4g021825 | 73.115 | 305 | 72 | 4 | 1 | 300 | 25 | 324 | 1.01e-159 | 448 |
| MS.gene99621.t1 | MTR_4g021800 | 85.659 | 258 | 28 | 3 | 45 | 300 | 1 | 251 | 2.20e-155 | 434 |
| MS.gene99621.t1 | MTR_4g021800 | 82.759 | 232 | 33 | 3 | 1 | 229 | 1 | 228 | 2.62e-133 | 377 |
| MS.gene99621.t1 | MTR_2g097520 | 55.921 | 304 | 117 | 5 | 1 | 300 | 1 | 291 | 4.74e-112 | 326 |
| MS.gene99621.t1 | MTR_4g064380 | 55.298 | 302 | 112 | 5 | 1 | 300 | 1 | 281 | 1.74e-111 | 324 |
| MS.gene99621.t1 | MTR_1g085570 | 48.026 | 304 | 107 | 3 | 1 | 300 | 1 | 257 | 1.44e-98 | 290 |
| MS.gene99621.t1 | MTR_1g085570 | 50.174 | 287 | 96 | 2 | 14 | 300 | 10 | 249 | 2.48e-98 | 290 |
| MS.gene99621.t1 | MTR_1g085570 | 50.000 | 288 | 96 | 3 | 14 | 300 | 10 | 250 | 1.72e-96 | 285 |
| MS.gene99621.t1 | MTR_1g085570 | 50.420 | 238 | 71 | 2 | 14 | 251 | 10 | 200 | 1.21e-79 | 241 |
| MS.gene99621.t1 | MTR_1g104610 | 45.185 | 270 | 105 | 2 | 15 | 282 | 10 | 238 | 9.76e-78 | 238 |
| MS.gene99621.t1 | MTR_1g104610 | 47.257 | 237 | 84 | 1 | 15 | 251 | 10 | 205 | 8.45e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99621.t1 | AT5G02230 | 68.874 | 302 | 70 | 3 | 1 | 300 | 1 | 280 | 4.55e-141 | 399 |
| MS.gene99621.t1 | AT5G02230 | 68.874 | 302 | 70 | 3 | 1 | 300 | 1 | 280 | 4.55e-141 | 399 |
| MS.gene99621.t1 | AT5G02230 | 68.874 | 302 | 70 | 3 | 1 | 300 | 38 | 317 | 9.90e-141 | 400 |
| MS.gene99621.t1 | AT5G59480 | 56.667 | 300 | 106 | 4 | 1 | 296 | 1 | 280 | 2.27e-118 | 342 |
| MS.gene99621.t1 | AT5G59480 | 56.667 | 300 | 106 | 4 | 1 | 296 | 1 | 280 | 2.27e-118 | 342 |
| MS.gene99621.t1 | AT5G59480 | 56.667 | 300 | 106 | 4 | 1 | 296 | 1 | 280 | 2.27e-118 | 342 |
| MS.gene99621.t1 | AT5G59480 | 56.667 | 300 | 106 | 4 | 1 | 296 | 1 | 280 | 2.27e-118 | 342 |
| MS.gene99621.t1 | AT5G59480 | 56.667 | 300 | 105 | 5 | 1 | 296 | 1 | 279 | 2.12e-116 | 337 |
| MS.gene99621.t1 | AT5G59490 | 54.333 | 300 | 97 | 4 | 6 | 300 | 2 | 266 | 7.96e-103 | 301 |
| MS.gene99621.t1 | AT3G62040 | 52.124 | 259 | 74 | 5 | 45 | 300 | 1 | 212 | 2.98e-83 | 250 |
| MS.gene99621.t1 | AT2G32150 | 46.415 | 265 | 102 | 2 | 16 | 280 | 7 | 231 | 1.32e-82 | 250 |
| MS.gene99621.t1 | AT5G59490 | 55.285 | 246 | 75 | 3 | 6 | 251 | 2 | 212 | 5.70e-81 | 244 |
| MS.gene99621.t1 | AT2G32150 | 47.034 | 236 | 85 | 2 | 16 | 251 | 7 | 202 | 3.93e-69 | 214 |
| MS.gene99621.t1 | AT2G32150 | 45.833 | 216 | 77 | 2 | 16 | 231 | 7 | 182 | 6.69e-61 | 192 |
Find 60 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCAGCTTGTATGTTTC+TGG | 0.134165 | 7.1:-39428061 | None:intergenic |
| GAACAACTATGGCTGGTTTA+AGG | 0.158157 | 7.1:+39426349 | MS.gene99621:CDS |
| AAATATGATTGTCTTCTATT+TGG | 0.166756 | 7.1:+39425943 | MS.gene99621:CDS |
| CTTTGGCAACACTTCACTTT+TGG | 0.180015 | 7.1:-39427347 | None:intergenic |
| TCTGAAGGTTTGCAAATAAT+TGG | 0.185854 | 7.1:-39427373 | None:intergenic |
| GACCAATAATGTCAAATATT+TGG | 0.190129 | 7.1:-39427312 | None:intergenic |
| TTCCAAATATTTGACATTAT+TGG | 0.211448 | 7.1:+39427310 | MS.gene99621:CDS |
| TCTTGCTAAGCCTACCTTAT+AGG | 0.229476 | 7.1:+39426780 | MS.gene99621:CDS |
| GAGAGGCAGTGCCAGAATTA+TGG | 0.244343 | 7.1:+39428289 | MS.gene99621:CDS |
| TTGCAAATAATTGGTGTCTT+TGG | 0.268860 | 7.1:-39427364 | None:intergenic |
| ATGTCAGATTCCCATAATTC+TGG | 0.270241 | 7.1:-39428300 | None:intergenic |
| TTGATGATTTATAGACTATA+TGG | 0.283037 | 7.1:+39426260 | MS.gene99621:intron |
| AGCAAGAGGTTCCTTAGAAT+TGG | 0.290543 | 7.1:-39426764 | None:intergenic |
| GGTAAATCACAGAGAATTAA+AGG | 0.311037 | 7.1:+39428231 | MS.gene99621:CDS |
| AAACTTACTAGTTTCCTATA+AGG | 0.311064 | 7.1:-39426794 | None:intergenic |
| GCATGTGGACAAAATATTAA+AGG | 0.324767 | 7.1:+39426103 | MS.gene99621:CDS |
| TGAAGCCAGACCCAATTCTA+AGG | 0.354368 | 7.1:+39426753 | MS.gene99621:CDS |
| TTCAGAATATGCCATTGAAT+TGG | 0.372401 | 7.1:+39427390 | MS.gene99621:CDS |
| AACAACTATGGCTGGTTTAA+GGG | 0.377629 | 7.1:+39426350 | MS.gene99621:CDS |
| AGAGGCAGTGCCAGAATTAT+GGG | 0.383627 | 7.1:+39428290 | MS.gene99621:CDS |
| ATTCTGGCACTGCCTCTCTA+AGG | 0.393934 | 7.1:-39428284 | None:intergenic |
| GTCTCCACAGCAAGCTTGTT+AGG | 0.401994 | 7.1:-39428342 | None:intergenic |
| GCAAGAGGTTCCTTAGAATT+GGG | 0.408266 | 7.1:-39426763 | None:intergenic |
| GAAGATGATATTGAGTTTGT+AGG | 0.416183 | 7.1:+39427244 | MS.gene99621:CDS |
| AAGGTTGTGGATGCTTTCTA+AGG | 0.423337 | 7.1:-39428265 | None:intergenic |
| TTTGCAATACCACAGCTTAG+TGG | 0.425245 | 7.1:-39426079 | None:intergenic |
| AGTTCTTTGTGGGTCAAGAT+TGG | 0.432122 | 7.1:-39427425 | None:intergenic |
| TCTGGCTTCAAATTCTCATA+TGG | 0.444951 | 7.1:-39426740 | None:intergenic |
| ATGCAGTTAAGGCACTAAAC+AGG | 0.445452 | 7.1:+39427140 | MS.gene99621:CDS |
| AGGTTCCTTAGAATTGGGTC+TGG | 0.448378 | 7.1:-39426758 | None:intergenic |
| AACTATGGAACAACTATGGC+TGG | 0.456420 | 7.1:+39426342 | MS.gene99621:CDS |
| AGACAAAGTTCATGCAGTTA+AGG | 0.463592 | 7.1:+39427129 | MS.gene99621:CDS |
| GACTATATGGTTGAGAAGCT+TGG | 0.467240 | 7.1:+39426273 | MS.gene99621:intron |
| ACTAGGACTTGTGGTATGAT+TGG | 0.468960 | 7.1:-39427278 | None:intergenic |
| TCTGACATTAAATCAGAAGT+TGG | 0.473154 | 7.1:+39428315 | MS.gene99621:CDS |
| AGAAACACTGTTCTTGTGGA+TGG | 0.473227 | 7.1:-39427215 | None:intergenic |
| GCACTGCCTCTCTAAGGTTG+TGG | 0.491454 | 7.1:-39428278 | None:intergenic |
| TTACTAGTTTCCTATAAGGT+AGG | 0.493673 | 7.1:-39426790 | None:intergenic |
| GGAGACATCTGTGACTGCTT+AGG | 0.506170 | 7.1:+39428359 | MS.gene99621:CDS |
| CATCAGAAACACTGTTCTTG+TGG | 0.523606 | 7.1:-39427219 | None:intergenic |
| TATCTTGAGAGCCAATTCAA+TGG | 0.531830 | 7.1:-39427401 | None:intergenic |
| GAAACACTGTTCTTGTGGAT+GGG | 0.532461 | 7.1:-39427214 | None:intergenic |
| GTTAAGGCACTAAACAGGCT+TGG | 0.537369 | 7.1:+39427145 | MS.gene99621:CDS |
| AGTGCCAGAAACATACAAGC+TGG | 0.558578 | 7.1:+39428057 | MS.gene99621:CDS |
| AATTCAATGGCATATTCTGA+AGG | 0.564449 | 7.1:-39427388 | None:intergenic |
| TGTGGGACTTGACACTGTGC+TGG | 0.591732 | 7.1:+39428086 | MS.gene99621:CDS |
| TTATCCTAACAAGCTTGCTG+TGG | 0.609017 | 7.1:+39428338 | MS.gene99621:CDS |
| TTGACTATGATGAATATCAC+AGG | 0.610280 | 7.1:+39426560 | MS.gene99621:CDS |
| GTGCCAGAAACATACAAGCT+GGG | 0.615550 | 7.1:+39428058 | MS.gene99621:CDS |
| GTTACTACCACTAGGACTTG+TGG | 0.630315 | 7.1:-39427287 | None:intergenic |
| CATACAAGCTGGGAAACGTG+TGG | 0.635233 | 7.1:+39428068 | MS.gene99621:CDS |
| CTGCTTGAAATGGAGTACGA+GGG | 0.637705 | 7.1:+39425895 | None:intergenic |
| ATACAAGCTGGGAAACGTGT+GGG | 0.639764 | 7.1:+39428069 | MS.gene99621:CDS |
| ATTTGGAAGTTACTACCACT+AGG | 0.646613 | 7.1:-39427295 | None:intergenic |
| TATAAGGTAGGCTTAGCAAG+AGG | 0.647380 | 7.1:-39426778 | None:intergenic |
| TCTGCTTGAAATGGAGTACG+AGG | 0.655487 | 7.1:+39425894 | None:intergenic |
| AATCATACCACAAGTCCTAG+TGG | 0.657831 | 7.1:+39427280 | MS.gene99621:CDS |
| ACTTTGTATCCACTAAGCTG+TGG | 0.665300 | 7.1:+39426070 | MS.gene99621:CDS |
| AAGCATCCACAACCTTAGAG+AGG | 0.675174 | 7.1:+39428272 | MS.gene99621:CDS |
| TGTGGTATTGCAAAAGCATG+TGG | 0.705500 | 7.1:+39426088 | MS.gene99621:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATATTTATACACTTT+AGG | - | chr7.1:39426883-39426902 | None:intergenic | 10.0% |
| !!! | TAAAAACTGATTTTTATTAT+AGG | - | chr7.1:39427624-39427643 | None:intergenic | 10.0% |
| !! | AATGACAAAAAAAACAAATT+AGG | - | chr7.1:39428009-39428028 | None:intergenic | 15.0% |
| !! | ATAACATAATGTCAATAATT+TGG | - | chr7.1:39428153-39428172 | None:intergenic | 15.0% |
| !!! | CTATTTTATATACTATATGA+TGG | + | chr7.1:39427036-39427055 | MS.gene99621:intron | 15.0% |
| !!! | CTTTTTAATTAATCTGAAAT+CGG | + | chr7.1:39426400-39426419 | MS.gene99621:intron | 15.0% |
| !!! | GTTTTTTTGTTTTTTTTTGA+AGG | + | chr7.1:39426813-39426832 | MS.gene99621:intron | 15.0% |
| !!! | TTTTAATAATCTGTAACAAA+CGG | - | chr7.1:39427520-39427539 | None:intergenic | 15.0% |
| !! | AAATATGATTGTCTTCTATT+TGG | + | chr7.1:39425943-39425962 | MS.gene99621:CDS | 20.0% |
| !! | ATTGACAAAAACAAAAACAT+AGG | - | chr7.1:39426520-39426539 | None:intergenic | 20.0% |
| !! | CGATTTCAGATTAATTAAAA+AGG | - | chr7.1:39426402-39426421 | None:intergenic | 20.0% |
| !! | TCGAAAAGATATAAAATCTT+AGG | + | chr7.1:39426908-39426927 | MS.gene99621:intron | 20.0% |
| !! | TTCCAAATATTTGACATTAT+TGG | + | chr7.1:39427310-39427329 | MS.gene99621:CDS | 20.0% |
| !!! | ATTTTAATGATGAGTGTATT+AGG | - | chr7.1:39427464-39427483 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTTTTGTCAATTT+AGG | + | chr7.1:39426522-39426541 | MS.gene99621:intron | 20.0% |
| !!! | TTGATGATTTATAGACTATA+TGG | + | chr7.1:39426260-39426279 | MS.gene99621:intron | 20.0% |
| ! | AACCATCTTTACAAAAACTA+TGG | + | chr7.1:39426327-39426346 | MS.gene99621:CDS | 25.0% |
| ! | AATCAAGAATTACGACTTTA+AGG | + | chr7.1:39427492-39427511 | MS.gene99621:intron | 25.0% |
| ! | ACGTGTGATTACAAATATTA+AGG | - | chr7.1:39427877-39427896 | None:intergenic | 25.0% |
| ! | ATCAAGAATTACGACTTTAA+GGG | + | chr7.1:39427493-39427512 | MS.gene99621:intron | 25.0% |
| ! | CGTGTGATTACAAATATTAA+GGG | - | chr7.1:39427876-39427895 | None:intergenic | 25.0% |
| ! | CTGTTCACATCATTATATAT+AGG | + | chr7.1:39428206-39428225 | MS.gene99621:intron | 25.0% |
| ! | GACCAATAATGTCAAATATT+TGG | - | chr7.1:39427315-39427334 | None:intergenic | 25.0% |
| ! | GTATTAAAATTTAGAGAGTG+TGG | - | chr7.1:39426861-39426880 | None:intergenic | 25.0% |
| ! | GTTTACTAATTTAGAAGTGA+TGG | - | chr7.1:39426618-39426637 | None:intergenic | 25.0% |
| ! | TCACATCATTATATATAGGT+TGG | + | chr7.1:39428210-39428229 | MS.gene99621:intron | 25.0% |
| ! | TGTATAACAAATGTTAGCAA+TGG | - | chr7.1:39428116-39428135 | None:intergenic | 25.0% |
| !! | AAACTTACTAGTTTCCTATA+AGG | - | chr7.1:39426797-39426816 | None:intergenic | 25.0% |
| !! | ATAGTTTTTGTAAAGATGGT+TGG | - | chr7.1:39426328-39426347 | None:intergenic | 25.0% |
| !! | TCATTTTCAGTTATTCTTTG+AGG | + | chr7.1:39428032-39428051 | MS.gene99621:intron | 25.0% |
| !! | TTCCATAGTTTTTGTAAAGA+TGG | - | chr7.1:39426332-39426351 | None:intergenic | 25.0% |
| !! | TTTAATTAATCTGAAATCGG+TGG | + | chr7.1:39426403-39426422 | MS.gene99621:intron | 25.0% |
| !! | TTTTGTCAATTTAGGCAATT+GGG | + | chr7.1:39426530-39426549 | MS.gene99621:intron | 25.0% |
| !! | TTTTTGTCAATTTAGGCAAT+TGG | + | chr7.1:39426529-39426548 | MS.gene99621:intron | 25.0% |
| !!! | TGTTAATACAGTTTTGTTCA+TGG | + | chr7.1:39426710-39426729 | MS.gene99621:intron | 25.0% |
| AATTCAATGGCATATTCTGA+AGG | - | chr7.1:39427391-39427410 | None:intergenic | 30.0% | |
| ATAGGCAACACAAAATAAAG+AGG | - | chr7.1:39427093-39427112 | None:intergenic | 30.0% | |
| ATTAGAGGCTCATATTTGTT+TGG | - | chr7.1:39428179-39428198 | None:intergenic | 30.0% | |
| CAAAAACTATGGAACAACTA+TGG | + | chr7.1:39426338-39426357 | MS.gene99621:CDS | 30.0% | |
| GAAGATGATATTGAGTTTGT+AGG | + | chr7.1:39427244-39427263 | MS.gene99621:CDS | 30.0% | |
| GCATGTGGACAAAATATTAA+AGG | + | chr7.1:39426103-39426122 | MS.gene99621:CDS | 30.0% | |
| GGTAAATCACAGAGAATTAA+AGG | + | chr7.1:39428231-39428250 | MS.gene99621:CDS | 30.0% | |
| GTGAACAGTCAAATAATTAG+AGG | - | chr7.1:39428194-39428213 | None:intergenic | 30.0% | |
| TCTGAAGGTTTGCAAATAAT+TGG | - | chr7.1:39427376-39427395 | None:intergenic | 30.0% | |
| TCTGACATTAAATCAGAAGT+TGG | + | chr7.1:39428315-39428334 | MS.gene99621:CDS | 30.0% | |
| TTCAGAATATGCCATTGAAT+TGG | + | chr7.1:39427390-39427409 | MS.gene99621:CDS | 30.0% | |
| TTGACTATGATGAATATCAC+AGG | + | chr7.1:39426560-39426579 | MS.gene99621:CDS | 30.0% | |
| TTTGTAATCACACGTAATTG+TGG | + | chr7.1:39427882-39427901 | MS.gene99621:intron | 30.0% | |
| ! | GTTTTCTTACAGTTCTTTGT+GGG | - | chr7.1:39427438-39427457 | None:intergenic | 30.0% |
| ! | TGTTTTCTTACAGTTCTTTG+TGG | - | chr7.1:39427439-39427458 | None:intergenic | 30.0% |
| ! | TTACTAGTTTCCTATAAGGT+AGG | - | chr7.1:39426793-39426812 | None:intergenic | 30.0% |
| ! | TTGCAAATAATTGGTGTCTT+TGG | - | chr7.1:39427367-39427386 | None:intergenic | 30.0% |
| !!! | CTGCGAACTTTGAAATTTTT+AGG | - | chr7.1:39427951-39427970 | None:intergenic | 30.0% |
| AGACAAAGTTCATGCAGTTA+AGG | + | chr7.1:39427129-39427148 | MS.gene99621:CDS | 35.0% | |
| ATAGTAGTCGTTACTCGTTA+CGG | - | chr7.1:39427020-39427039 | None:intergenic | 35.0% | |
| ATGTCAGATTCCCATAATTC+TGG | - | chr7.1:39428303-39428322 | None:intergenic | 35.0% | |
| ATTTGGAAGTTACTACCACT+AGG | - | chr7.1:39427298-39427317 | None:intergenic | 35.0% | |
| CCGTGGCTACAAAATTATAA+CGG | - | chr7.1:39427836-39427855 | None:intergenic | 35.0% | |
| CTGCATTTGTGAAGATCTAT+AGG | - | chr7.1:39427111-39427130 | None:intergenic | 35.0% | |
| TATCTTGAGAGCCAATTCAA+TGG | - | chr7.1:39427404-39427423 | None:intergenic | 35.0% | |
| ! | AATTAATCTGAAATCGGTGG+TGG | + | chr7.1:39426406-39426425 | MS.gene99621:intron | 35.0% |
| ! | ATCTAAGACCGACTAATTCA+AGG | - | chr7.1:39426441-39426460 | None:intergenic | 35.0% |
| ! | ATTAATCTGAAATCGGTGGT+GGG | + | chr7.1:39426407-39426426 | MS.gene99621:intron | 35.0% |
| ! | CCGTTATAATTTTGTAGCCA+CGG | + | chr7.1:39427833-39427852 | MS.gene99621:intron | 35.0% |
| ! | GTTGTTGCATGCAATTTTGA+TGG | + | chr7.1:39426173-39426192 | MS.gene99621:intron | 35.0% |
| ! | TAATTTTGTAGCCACGGTTT+AGG | + | chr7.1:39427839-39427858 | MS.gene99621:intron | 35.0% |
| ! | TCTAAGACCGACTAATTCAA+GGG | - | chr7.1:39426440-39426459 | None:intergenic | 35.0% |
| ! | TCTGGCTTCAAATTCTCATA+TGG | - | chr7.1:39426743-39426762 | None:intergenic | 35.0% |
| !! | AACAACTATGGCTGGTTTAA+GGG | + | chr7.1:39426350-39426369 | MS.gene99621:CDS | 35.0% |
| !!! | GGACTAGAAGATTGTTTTGA+AGG | + | chr7.1:39427166-39427185 | MS.gene99621:CDS | 35.0% |
| AACTATGGAACAACTATGGC+TGG | + | chr7.1:39426342-39426361 | MS.gene99621:CDS | 40.0% | |
| AAGGTTGTGGATGCTTTCTA+AGG | - | chr7.1:39428268-39428287 | None:intergenic | 40.0% | |
| AATCATACCACAAGTCCTAG+TGG | + | chr7.1:39427280-39427299 | MS.gene99621:CDS | 40.0% | |
| ACTAGGACTTGTGGTATGAT+TGG | - | chr7.1:39427281-39427300 | None:intergenic | 40.0% | |
| ACTTTGTATCCACTAAGCTG+TGG | + | chr7.1:39426070-39426089 | MS.gene99621:CDS | 40.0% | |
| AGAAACACTGTTCTTGTGGA+TGG | - | chr7.1:39427218-39427237 | None:intergenic | 40.0% | |
| AGCAAGAGGTTCCTTAGAAT+TGG | - | chr7.1:39426767-39426786 | None:intergenic | 40.0% | |
| AGTTCTTTGTGGGTCAAGAT+TGG | - | chr7.1:39427428-39427447 | None:intergenic | 40.0% | |
| CATCAGAAACACTGTTCTTG+TGG | - | chr7.1:39427222-39427241 | None:intergenic | 40.0% | |
| CTAAGACCGACTAATTCAAG+GGG | - | chr7.1:39426439-39426458 | None:intergenic | 40.0% | |
| GAAACACTGTTCTTGTGGAT+GGG | - | chr7.1:39427217-39427236 | None:intergenic | 40.0% | |
| GACTATATGGTTGAGAAGCT+TGG | + | chr7.1:39426273-39426292 | MS.gene99621:intron | 40.0% | |
| GCAAGAGGTTCCTTAGAATT+GGG | - | chr7.1:39426766-39426785 | None:intergenic | 40.0% | |
| TATAAGGTAGGCTTAGCAAG+AGG | - | chr7.1:39426781-39426800 | None:intergenic | 40.0% | |
| TCTTGCTAAGCCTACCTTAT+AGG | + | chr7.1:39426780-39426799 | MS.gene99621:CDS | 40.0% | |
| TTTCCCAGCTTGTATGTTTC+TGG | - | chr7.1:39428064-39428083 | None:intergenic | 40.0% | |
| TTTGCAATACCACAGCTTAG+TGG | - | chr7.1:39426082-39426101 | None:intergenic | 40.0% | |
| ! | ATGCAGTTAAGGCACTAAAC+AGG | + | chr7.1:39427140-39427159 | MS.gene99621:CDS | 40.0% |
| ! | CTTTGGCAACACTTCACTTT+TGG | - | chr7.1:39427350-39427369 | None:intergenic | 40.0% |
| ! | TGTGGTATTGCAAAAGCATG+TGG | + | chr7.1:39426088-39426107 | MS.gene99621:CDS | 40.0% |
| !! | GAACAACTATGGCTGGTTTA+AGG | + | chr7.1:39426349-39426368 | MS.gene99621:CDS | 40.0% |
| !! | TTATCCTAACAAGCTTGCTG+TGG | + | chr7.1:39428338-39428357 | MS.gene99621:CDS | 40.0% |
| AAGCATCCACAACCTTAGAG+AGG | + | chr7.1:39428272-39428291 | MS.gene99621:CDS | 45.0% | |
| AGAGGCAGTGCCAGAATTAT+GGG | + | chr7.1:39428290-39428309 | MS.gene99621:CDS | 45.0% | |
| AGGTTCCTTAGAATTGGGTC+TGG | - | chr7.1:39426761-39426780 | None:intergenic | 45.0% | |
| AGTGCCAGAAACATACAAGC+TGG | + | chr7.1:39428057-39428076 | MS.gene99621:CDS | 45.0% | |
| ATACAAGCTGGGAAACGTGT+GGG | + | chr7.1:39428069-39428088 | MS.gene99621:CDS | 45.0% | |
| ATCGGTCCCCTTGAATTAGT+CGG | + | chr7.1:39426430-39426449 | MS.gene99621:intron | 45.0% | |
| GTGCCAGAAACATACAAGCT+GGG | + | chr7.1:39428058-39428077 | MS.gene99621:CDS | 45.0% | |
| GTTACTACCACTAGGACTTG+TGG | - | chr7.1:39427290-39427309 | None:intergenic | 45.0% | |
| TGAAGCCAGACCCAATTCTA+AGG | + | chr7.1:39426753-39426772 | MS.gene99621:CDS | 45.0% | |
| ! | GTTAAGGCACTAAACAGGCT+TGG | + | chr7.1:39427145-39427164 | MS.gene99621:CDS | 45.0% |
| !!! | ATATTTTTTTAAAAAAATCT+CGG | - | chr7.1:39426470-39426489 | None:intergenic | 5.0% |
| !!! | TTTTTAAAAAAATATTAATC+TGG | + | chr7.1:39426475-39426494 | MS.gene99621:intron | 5.0% |
| ATTCTGGCACTGCCTCTCTA+AGG | - | chr7.1:39428287-39428306 | None:intergenic | 50.0% | |
| CAAAGTTCGCAGTCAGATCG+TGG | + | chr7.1:39427959-39427978 | MS.gene99621:intron | 50.0% | |
| CATACAAGCTGGGAAACGTG+TGG | + | chr7.1:39428068-39428087 | MS.gene99621:CDS | 50.0% | |
| GAGAGGCAGTGCCAGAATTA+TGG | + | chr7.1:39428289-39428308 | MS.gene99621:CDS | 50.0% | |
| ! | GTCTCCACAGCAAGCTTGTT+AGG | - | chr7.1:39428345-39428364 | None:intergenic | 50.0% |
| !! | TCTGAAATCGGTGGTGGGAT+CGG | + | chr7.1:39426412-39426431 | MS.gene99621:intron | 50.0% |
| TGTGGGACTTGACACTGTGC+TGG | + | chr7.1:39428086-39428105 | MS.gene99621:CDS | 55.0% | |
| TTGCGATGCTGCCTAAACCG+TGG | - | chr7.1:39427853-39427872 | None:intergenic | 55.0% | |
| !! | GCACTGCCTCTCTAAGGTTG+TGG | - | chr7.1:39428281-39428300 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 39425904 | 39428380 | 39425904 | ID=MS.gene99621 |
| chr7.1 | mRNA | 39425904 | 39428380 | 39425904 | ID=MS.gene99621.t1;Parent=MS.gene99621 |
| chr7.1 | exon | 39425904 | 39425964 | 39425904 | ID=MS.gene99621.t1.exon1;Parent=MS.gene99621.t1 |
| chr7.1 | CDS | 39425904 | 39425964 | 39425904 | ID=cds.MS.gene99621.t1;Parent=MS.gene99621.t1 |
| chr7.1 | exon | 39426059 | 39426124 | 39426059 | ID=MS.gene99621.t1.exon2;Parent=MS.gene99621.t1 |
| chr7.1 | CDS | 39426059 | 39426124 | 39426059 | ID=cds.MS.gene99621.t1;Parent=MS.gene99621.t1 |
| chr7.1 | exon | 39426274 | 39426371 | 39426274 | ID=MS.gene99621.t1.exon3;Parent=MS.gene99621.t1 |
| chr7.1 | CDS | 39426274 | 39426371 | 39426274 | ID=cds.MS.gene99621.t1;Parent=MS.gene99621.t1 |
| chr7.1 | exon | 39426544 | 39426581 | 39426544 | ID=MS.gene99621.t1.exon4;Parent=MS.gene99621.t1 |
| chr7.1 | CDS | 39426544 | 39426581 | 39426544 | ID=cds.MS.gene99621.t1;Parent=MS.gene99621.t1 |
| chr7.1 | exon | 39426721 | 39426808 | 39426721 | ID=MS.gene99621.t1.exon5;Parent=MS.gene99621.t1 |
| chr7.1 | CDS | 39426721 | 39426808 | 39426721 | ID=cds.MS.gene99621.t1;Parent=MS.gene99621.t1 |
| chr7.1 | exon | 39427115 | 39427447 | 39427115 | ID=MS.gene99621.t1.exon6;Parent=MS.gene99621.t1 |
| chr7.1 | CDS | 39427115 | 39427447 | 39427115 | ID=cds.MS.gene99621.t1;Parent=MS.gene99621.t1 |
| chr7.1 | exon | 39428042 | 39428107 | 39428042 | ID=MS.gene99621.t1.exon7;Parent=MS.gene99621.t1 |
| chr7.1 | CDS | 39428042 | 39428107 | 39428042 | ID=cds.MS.gene99621.t1;Parent=MS.gene99621.t1 |
| chr7.1 | exon | 39428228 | 39428380 | 39428228 | ID=MS.gene99621.t1.exon8;Parent=MS.gene99621.t1 |
| chr7.1 | CDS | 39428228 | 39428380 | 39428228 | ID=cds.MS.gene99621.t1;Parent=MS.gene99621.t1 |
| Gene Sequence |
| Protein sequence |
