AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99835

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99835.t1 MTR_2g046410 93.814 97 6 0 39 135 8 104 7.11e-58 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGATCCTCCACAATTTCT+TGG 0.249202 7.2:+71574774 MS.gene99835:CDS
TTCCTGTGCATATCAGTGTT+TGG 0.280833 7.2:-71574008 None:intergenic
AGGAGATGCAGTTTGGGAAT+TGG 0.292320 7.2:+71573975 MS.gene99835:CDS
TCCTGTGCATATCAGTGTTT+GGG 0.305294 7.2:-71574007 None:intergenic
ATTGAGTGTCTGGAGGAAAT+AGG 0.307141 7.2:+71573955 MS.gene99835:CDS
AATCATATAGAAGCCGAAAA+TGG 0.319780 7.2:+71574585 MS.gene99835:intron
AGGAAATAGGAGATGCAGTT+TGG 0.335676 7.2:+71573968 MS.gene99835:CDS
TGCAGTTTGGGAATTGGATA+TGG 0.377236 7.2:+71573981 MS.gene99835:CDS
GAAAGAAATGCTGAAAATAA+AGG 0.381079 7.2:+71574732 MS.gene99835:CDS
TACAATTTGCAGATAATGTC+GGG 0.399963 7.2:+71573901 None:intergenic
TATGTTACCTTTACTTCGTC+AGG 0.404680 7.2:-71574867 None:intergenic
AAAGTCAGCTTTCTCTGGTT+CGG 0.406862 7.2:-71574802 None:intergenic
AACCAGAGAAAGCTGACTTT+TGG 0.410541 7.2:+71574805 MS.gene99835:CDS
AGCCAAAAGTCAGCTTTCTC+TGG 0.415803 7.2:-71574807 None:intergenic
GAACCGAAGGATTGAGTGTC+TGG 0.416168 7.2:+71573945 MS.gene99835:CDS
GGAAATAGGAGATGCAGTTT+GGG 0.418307 7.2:+71573969 MS.gene99835:CDS
CCTCCAGACACTCAATCCTT+CGG 0.423683 7.2:-71573948 None:intergenic
TATTCAAGCTATGGCAGAAA+TGG 0.428109 7.2:+71574644 MS.gene99835:CDS
GTTGGATATTTAGACCTAGA+TGG 0.442309 7.2:-71575305 None:intergenic
AGGACCAAGTGGATGAAGAT+TGG 0.442604 7.2:+71575132 MS.gene99835:intron
AAGCAATACCGAAGGAGGTA+TGG 0.447171 7.2:+71574614 MS.gene99835:CDS
AACTGCTGCAAAGGCTGAAA+GGG 0.452186 7.2:+71574686 MS.gene99835:CDS
AGCTCTTCCCATACCTCCTT+CGG 0.465200 7.2:-71574622 None:intergenic
CAGGAAGATAGAAGCAATGA+AGG 0.477605 7.2:+71575250 MS.gene99835:CDS
TGCAGCAGTTTGTTCTGCAA+TGG 0.504538 7.2:-71574673 None:intergenic
GAAGTGTGGGCGGACCATCT+AGG 0.506101 7.2:+71575291 MS.gene99835:CDS
AAACTGCTGCAAAGGCTGAA+AGG 0.515036 7.2:+71574685 MS.gene99835:CDS
TGCAGAACAAACTGCTGCAA+AGG 0.522244 7.2:+71574677 MS.gene99835:CDS
AAATGCTGAAAATAAAGGAT+TGG 0.533850 7.2:+71574737 MS.gene99835:CDS
GGATATTCGAAAGCAACAAA+GGG 0.546128 7.2:+71574707 MS.gene99835:CDS
GGGATATTCGAAAGCAACAA+AGG 0.547460 7.2:+71574706 MS.gene99835:CDS
AGCAATACCGAAGGAGGTAT+GGG 0.552736 7.2:+71574615 MS.gene99835:CDS
GGGAAGAGCTATTCAAGCTA+TGG 0.554031 7.2:+71574635 MS.gene99835:CDS
TGGAATCAATCGAGGAAGTG+TGG 0.554352 7.2:+71575277 MS.gene99835:CDS
ATAGAAGCAATGAAGGAAGG+TGG 0.555130 7.2:+71575257 MS.gene99835:CDS
GAGGTGTCCTGACGAAGTAA+AGG 0.560366 7.2:+71574860 MS.gene99835:CDS
GGGAAGTCATTGAGTCACTC+GGG 0.562221 7.2:+71573922 MS.gene99835:CDS
TGGCTATGTGAACGATTTGA+AGG 0.572118 7.2:+71575152 MS.gene99835:CDS
TGAGTCACTCGGGGAACCGA+AGG 0.576536 7.2:+71573932 MS.gene99835:CDS
TCCCAAACACTGATATGCAC+AGG 0.582176 7.2:+71574006 MS.gene99835:CDS
GGGGAAGTCATTGAGTCACT+CGG 0.590627 7.2:+71573921 MS.gene99835:CDS
TGGAATTGACGAATTTCTAG+TGG 0.593112 7.2:-71575209 None:intergenic
GGAATCAATCGAGGAAGTGT+GGG 0.596116 7.2:+71575278 MS.gene99835:CDS
AAAAGATATTCGCTGTGTTG+AGG 0.600068 7.2:+71574841 MS.gene99835:CDS
ATAGCCAATCTTCATCCACT+TGG 0.610115 7.2:-71575136 None:intergenic
AAGATAGAAGCAATGAAGGA+AGG 0.625382 7.2:+71575254 MS.gene99835:CDS
TCGGTCTCTCCAAGAAATTG+TGG 0.627925 7.2:-71574783 None:intergenic
GAAGCAAGCAATACCGAAGG+AGG 0.630174 7.2:+71574609 MS.gene99835:CDS
ATCAATCGAGGAAGTGTGGG+CGG 0.630964 7.2:+71575281 MS.gene99835:CDS
TCGTTTCTTTCAGGACCAAG+TGG 0.653481 7.2:+71575121 MS.gene99835:intron
GTCTCTCCAAGAAATTGTGG+AGG 0.658532 7.2:-71574780 None:intergenic
ACAATTTGCAGATAATGTCG+GGG 0.658616 7.2:+71573902 None:intergenic
GGAGAAGCAAGCAATACCGA+AGG 0.661940 7.2:+71574606 MS.gene99835:CDS
CCGAAGGATTGAGTGTCTGG+AGG 0.663528 7.2:+71573948 MS.gene99835:CDS
CTATGTGAACGATTTGAAGG+TGG 0.665932 7.2:+71575155 MS.gene99835:CDS
AAGGAAGGTGGAATCAATCG+AGG 0.691870 7.2:+71575269 MS.gene99835:CDS
GGAAGTCATTGAGTCACTCG+GGG 0.700450 7.2:+71573923 MS.gene99835:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATTATTTAATAATT+AGG + chr7.2:71574517-71574536 MS.gene99835:intron 0.0%
!! AAACATAAAAATAAAACACA+AGG - chr7.2:71574225-71574244 None:intergenic 15.0%
!!! CTTTTACTAGTAAATTAATT+TGG - chr7.2:71574323-71574342 None:intergenic 15.0%
!! GTAGAAATGATTAAATCAAA+AGG - chr7.2:71575815-71575834 None:intergenic 20.0%
!! TAACAATCAAGATATTACTT+GGG + chr7.2:71574956-71574975 MS.gene99835:intron 20.0%
!!! AAAATATTTTCGTTTCTTTC+AGG + chr7.2:71575112-71575131 MS.gene99835:intron 20.0%
! AAATGCTGAAAATAAAGGAT+TGG + chr7.2:71574737-71574756 MS.gene99835:CDS 25.0%
! ATATGCATCTTACTTACTAT+TGG + chr7.2:71574887-71574906 MS.gene99835:intron 25.0%
! ATCACATCTAATTGTGTTAA+AGG - chr7.2:71575932-71575951 None:intergenic 25.0%
! CAATCTAAAGATCTTATACA+AGG + chr7.2:71575677-71575696 MS.gene99835:intron 25.0%
! CTAACAATCAAGATATTACT+TGG + chr7.2:71574955-71574974 MS.gene99835:intron 25.0%
! GAAAGAAATGCTGAAAATAA+AGG + chr7.2:71574732-71574751 MS.gene99835:CDS 25.0%
! TATGCATCTTACTTACTATT+GGG + chr7.2:71574888-71574907 MS.gene99835:intron 25.0%
!! ACACAATTAGATGTGATTTT+AGG + chr7.2:71575935-71575954 MS.gene99835:intron 25.0%
!! TCTAACCAATTATGACTTTT+AGG + chr7.2:71574541-71574560 MS.gene99835:intron 25.0%
AATCATATAGAAGCCGAAAA+TGG + chr7.2:71574585-71574604 MS.gene99835:intron 30.0%
ATGATTAAATCAAAAGGCAG+TGG - chr7.2:71575809-71575828 None:intergenic 30.0%
ATGTGGAAAACAAGATCATT+TGG + chr7.2:71575487-71575506 MS.gene99835:intron 30.0%
CAACAAGAAATTTCCTATTG+TGG - chr7.2:71575895-71575914 None:intergenic 30.0%
TGTTTCAAATGTGGAGATAT+AGG + chr7.2:71575539-71575558 MS.gene99835:intron 30.0%
TTAACTGTACTATTCGATTC+TGG + chr7.2:71575725-71575744 MS.gene99835:intron 30.0%
TTTCTATCGTTACGGAAAAT+GGG + chr7.2:71574397-71574416 MS.gene99835:intron 30.0%
! AACACCATTTTCTATCGTTA+CGG + chr7.2:71574389-71574408 MS.gene99835:intron 30.0%
! ATTAGATGTGATTTTAGGCA+TGG + chr7.2:71575940-71575959 MS.gene99835:intron 30.0%
! CGAATATCTTTTCTATCTCT+TGG - chr7.2:71574833-71574852 None:intergenic 30.0%
! GGAATAAAGTGTTTCAAATG+TGG + chr7.2:71575530-71575549 MS.gene99835:intron 30.0%
! TTTTCCGTAACGATAGAAAA+TGG - chr7.2:71574396-71574415 None:intergenic 30.0%
! TTTTCTATCGTTACGGAAAA+TGG + chr7.2:71574396-71574415 MS.gene99835:intron 30.0%
!! GATTATTTCTACGAGTCATT+GGG - chr7.2:71574569-71574588 None:intergenic 30.0%
!! TGATTATTTCTACGAGTCAT+TGG - chr7.2:71574570-71574589 None:intergenic 30.0%
!!! AACTAGTTTTTCGATTCCTA+TGG - chr7.2:71574046-71574065 None:intergenic 30.0%
AAAAGATATTCGCTGTGTTG+AGG + chr7.2:71574841-71574860 MS.gene99835:CDS 35.0%
AACCACTTGTAGAAAAATGC+AGG + chr7.2:71575231-71575250 MS.gene99835:CDS 35.0%
AAGATAGAAGCAATGAAGGA+AGG + chr7.2:71575254-71575273 MS.gene99835:CDS 35.0%
ACAAACAGTGTTTGCAACTA+TGG - chr7.2:71575852-71575871 None:intergenic 35.0%
ACGTTAATTATCTTGCCCTT+AGG - chr7.2:71574171-71574190 None:intergenic 35.0%
AGGTCTAAATATCCAACTCA+AGG + chr7.2:71575311-71575330 MS.gene99835:intron 35.0%
CAAACAGTGTTTGCAACTAT+GGG - chr7.2:71575851-71575870 None:intergenic 35.0%
GGATATTCGAAAGCAACAAA+GGG + chr7.2:71574707-71574726 MS.gene99835:CDS 35.0%
GGGTTCCTAAAAGTCATAAT+TGG - chr7.2:71574549-71574568 None:intergenic 35.0%
GGTCTAAATATCCAACTCAA+GGG + chr7.2:71575312-71575331 MS.gene99835:intron 35.0%
GTGCACAGTCTAAAAAGATA+TGG - chr7.2:71575982-71576001 None:intergenic 35.0%
GTTGGATATTTAGACCTAGA+TGG - chr7.2:71575308-71575327 None:intergenic 35.0%
TATGTTACCTTTACTTCGTC+AGG - chr7.2:71574870-71574889 None:intergenic 35.0%
TATTCAAGCTATGGCAGAAA+TGG + chr7.2:71574644-71574663 MS.gene99835:CDS 35.0%
TCATTTGGCTAACACTTGTT+CGG + chr7.2:71575502-71575521 MS.gene99835:intron 35.0%
TGATATGCACAGGAATAAGT+AGG + chr7.2:71574016-71574035 MS.gene99835:intron 35.0%
TTCTATCGTTACGGAAAATG+GGG + chr7.2:71574398-71574417 MS.gene99835:intron 35.0%
! ATGTGATTTTAGGCATGGAT+TGG + chr7.2:71575945-71575964 MS.gene99835:intron 35.0%
! ATTGCTTGCTTCTCCATTTT+CGG - chr7.2:71574601-71574620 None:intergenic 35.0%
! CGAGAGTAAGGCTTTTTATA+CGG - chr7.2:71575359-71575378 None:intergenic 35.0%
! TGCATTTTTCTACAAGTGGT+TGG - chr7.2:71575232-71575251 None:intergenic 35.0%
! TGGAATTGACGAATTTCTAG+TGG - chr7.2:71575212-71575231 None:intergenic 35.0%
! TTATACTCTAAGTGGTGTTG+AGG + chr7.2:71575649-71575668 MS.gene99835:intron 35.0%
! TTCCTGCATTTTTCTACAAG+TGG - chr7.2:71575236-71575255 None:intergenic 35.0%
! TTGGTTTGATCCATTTCCAA+TGG - chr7.2:71575432-71575451 None:intergenic 35.0%
!! TATGACGTACTTTAACTTGC+AGG + chr7.2:71574099-71574118 MS.gene99835:intron 35.0%
!!! AGTATTTTCCTAGAAGTGCT+AGG + chr7.2:71575006-71575025 MS.gene99835:intron 35.0%
!!! TGAGTTCTTGATTCTGGTTT+TGG - chr7.2:71575451-71575470 None:intergenic 35.0%
AAACAAGGAGGAATGACGAT+TGG + chr7.2:71575059-71575078 MS.gene99835:intron 40.0%
AAAGTCAGCTTTCTCTGGTT+CGG - chr7.2:71574805-71574824 None:intergenic 40.0%
ACAAGGTAGTTGCGATATGA+CGG + chr7.2:71575694-71575713 MS.gene99835:intron 40.0%
ACTCAAGGGTGGAATCATAA+AGG + chr7.2:71575326-71575345 MS.gene99835:intron 40.0%
AGAATCAAGAACTCACTCGA+AGG + chr7.2:71575456-71575475 MS.gene99835:intron 40.0%
AGATATAGGACACATGGCTA+GGG + chr7.2:71575553-71575572 MS.gene99835:intron 40.0%
AGGAAATAGGAGATGCAGTT+TGG + chr7.2:71573968-71573987 MS.gene99835:CDS 40.0%
AGTTCCTTTCCACCAGTATT+CGG - chr7.2:71574919-71574938 None:intergenic 40.0%
ATAGAAGCAATGAAGGAAGG+TGG + chr7.2:71575257-71575276 MS.gene99835:CDS 40.0%
ATAGCCAATCTTCATCCACT+TGG - chr7.2:71575139-71575158 None:intergenic 40.0%
ATGTGGAGATATAGGACACA+TGG + chr7.2:71575547-71575566 MS.gene99835:intron 40.0%
ATTGAGTGTCTGGAGGAAAT+AGG + chr7.2:71573955-71573974 MS.gene99835:CDS 40.0%
CAGGAAGATAGAAGCAATGA+AGG + chr7.2:71575250-71575269 MS.gene99835:CDS 40.0%
CTAAATATCCAACTCAAGGG+TGG + chr7.2:71575315-71575334 MS.gene99835:intron 40.0%
CTATGTGAACGATTTGAAGG+TGG + chr7.2:71575155-71575174 MS.gene99835:CDS 40.0%
GAACCAAAAAGTTGAACCTG+TGG + chr7.2:71575583-71575602 MS.gene99835:intron 40.0%
GAATTTCTGACCCTGAAACA+AGG + chr7.2:71575044-71575063 MS.gene99835:intron 40.0%
GGAAATAGGAGATGCAGTTT+GGG + chr7.2:71573969-71573988 MS.gene99835:CDS 40.0%
GGAAGGGTTTATACTCTAAG+TGG + chr7.2:71575641-71575660 MS.gene99835:intron 40.0%
GGAATAAGTAGGACAACCAT+AGG + chr7.2:71574027-71574046 MS.gene99835:intron 40.0%
GGGATATTCGAAAGCAACAA+AGG + chr7.2:71574706-71574725 MS.gene99835:CDS 40.0%
GTTACATCAGCCATTGGAAA+TGG + chr7.2:71575419-71575438 MS.gene99835:intron 40.0%
TAAACCCTTCCTTTCTCCTT+TGG - chr7.2:71575632-71575651 None:intergenic 40.0%
TCCTGTGCATATCAGTGTTT+GGG - chr7.2:71574010-71574029 None:intergenic 40.0%
TGAACAATGTGAGAGCTACA+AGG + chr7.2:71575606-71575625 MS.gene99835:intron 40.0%
TGCAGTTTGGGAATTGGATA+TGG + chr7.2:71573981-71574000 MS.gene99835:CDS 40.0%
TGGCTATGTGAACGATTTGA+AGG + chr7.2:71575152-71575171 MS.gene99835:CDS 40.0%
TTACATACTCAGGCTTGTCA+GGG - chr7.2:71574147-71574166 None:intergenic 40.0%
TTACTCGTAGTTCGAGAGTA+AGG - chr7.2:71575371-71575390 None:intergenic 40.0%
TTATGATTCCACCCTTGAGT+TGG - chr7.2:71575326-71575345 None:intergenic 40.0%
TTCCTATTGTGGATGACAAG+AGG - chr7.2:71575884-71575903 None:intergenic 40.0%
TTCCTGTGCATATCAGTGTT+TGG - chr7.2:71574011-71574030 None:intergenic 40.0%
TTCGAGTGAGTTCTTGATTC+TGG - chr7.2:71575457-71575476 None:intergenic 40.0%
TTTCCAATGGCTGATGTAAC+TGG - chr7.2:71575419-71575438 None:intergenic 40.0%
! AAAATGGGGCGTTACATTAG+TGG + chr7.2:71574412-71574431 MS.gene99835:intron 40.0%
! TCACCACAGGTTCAACTTTT+TGG - chr7.2:71575589-71575608 None:intergenic 40.0%
!! AACCAGAGAAAGCTGACTTT+TGG + chr7.2:71574805-71574824 MS.gene99835:CDS 40.0%
AAACTGCTGCAAAGGCTGAA+AGG + chr7.2:71574685-71574704 MS.gene99835:CDS 45.0%
AACTGCTGCAAAGGCTGAAA+GGG + chr7.2:71574686-71574705 MS.gene99835:CDS 45.0%
AAGCAATACCGAAGGAGGTA+TGG + chr7.2:71574614-71574633 MS.gene99835:CDS 45.0%
AAGGAAGGTGGAATCAATCG+AGG + chr7.2:71575269-71575288 MS.gene99835:CDS 45.0%
AAGGCCAAAGGAGAAAGGAA+GGG + chr7.2:71575625-71575644 MS.gene99835:intron 45.0%
ACATTAGTGGTATCAGAGCC+TGG + chr7.2:71574425-71574444 MS.gene99835:intron 45.0%
AGCCAAAAGTCAGCTTTCTC+TGG - chr7.2:71574810-71574829 None:intergenic 45.0%
AGCCTGAGTATGTAAGCCTA+AGG + chr7.2:71574152-71574171 MS.gene99835:intron 45.0%
AGGACCAAGTGGATGAAGAT+TGG + chr7.2:71575132-71575151 MS.gene99835:intron 45.0%
AGGAGATGCAGTTTGGGAAT+TGG + chr7.2:71573975-71573994 MS.gene99835:CDS 45.0%
CAAGGTAGTTGCGATATGAC+GGG + chr7.2:71575695-71575714 MS.gene99835:intron 45.0%
CACGATCCTCCACAATTTCT+TGG + chr7.2:71574774-71574793 MS.gene99835:CDS 45.0%
CTTACATACTCAGGCTTGTC+AGG - chr7.2:71574148-71574167 None:intergenic 45.0%
GAGATATAGGACACATGGCT+AGG + chr7.2:71575552-71575571 MS.gene99835:intron 45.0%
GATTCTTTCGGGAACGTTAG+AGG + chr7.2:71574450-71574469 MS.gene99835:intron 45.0%
GCCTGAGTATGTAAGCCTAA+GGG + chr7.2:71574153-71574172 MS.gene99835:intron 45.0%
GCTAACACTTGTTCGGAAAC+AGG + chr7.2:71575509-71575528 MS.gene99835:intron 45.0%
GCTGATGTAACTGGACGATA+GGG - chr7.2:71575410-71575429 None:intergenic 45.0%
GGGAAGAGCTATTCAAGCTA+TGG + chr7.2:71574635-71574654 MS.gene99835:CDS 45.0%
GTCCTCTTGTCATCCACAAT+AGG + chr7.2:71575879-71575898 MS.gene99835:intron 45.0%
GTCTCTCCAAGAAATTGTGG+AGG - chr7.2:71574783-71574802 None:intergenic 45.0%
TATTGGGAGATGCCGAATAC+TGG + chr7.2:71574904-71574923 MS.gene99835:intron 45.0%
TCCCAAACACTGATATGCAC+AGG + chr7.2:71574006-71574025 MS.gene99835:CDS 45.0%
TCGGTCTCTCCAAGAAATTG+TGG - chr7.2:71574786-71574805 None:intergenic 45.0%
TCGTTTCTTTCAGGACCAAG+TGG + chr7.2:71575121-71575140 MS.gene99835:intron 45.0%
TGCAGAACAAACTGCTGCAA+AGG + chr7.2:71574677-71574696 MS.gene99835:CDS 45.0%
TGCAGCAAAGTTTGAGTCGT+TGG + chr7.2:71575088-71575107 MS.gene99835:intron 45.0%
TGGAATCAATCGAGGAAGTG+TGG + chr7.2:71575277-71575296 MS.gene99835:CDS 45.0%
TTTCTGACCCTGAAACAAGG+AGG + chr7.2:71575047-71575066 MS.gene99835:intron 45.0%
TTTGCAGTCCTAGCACTTCT+AGG - chr7.2:71575017-71575036 None:intergenic 45.0%
! AGAGCCTGGTTGATTCTTTC+GGG + chr7.2:71574439-71574458 MS.gene99835:intron 45.0%
! AGCAATACCGAAGGAGGTAT+GGG + chr7.2:71574615-71574634 MS.gene99835:CDS 45.0%
! CAGAGCCTGGTTGATTCTTT+CGG + chr7.2:71574438-71574457 MS.gene99835:intron 45.0%
! CGTCATTCCTCCTTGTTTCA+GGG - chr7.2:71575057-71575076 None:intergenic 45.0%
! GGAATCAATCGAGGAAGTGT+GGG + chr7.2:71575278-71575297 MS.gene99835:CDS 45.0%
! TCGTCATTCCTCCTTGTTTC+AGG - chr7.2:71575058-71575077 None:intergenic 45.0%
! TGCAGCAGTTTGTTCTGCAA+TGG - chr7.2:71574676-71574695 None:intergenic 45.0%
!! ACTCGAAGGTGCTACAAATG+TGG + chr7.2:71575470-71575489 MS.gene99835:intron 45.0%
!! TAGAAGTGCTAGGACTGCAA+AGG + chr7.2:71575016-71575035 MS.gene99835:intron 45.0%
AGCTCTTCCCATACCTCCTT+CGG - chr7.2:71574625-71574644 None:intergenic 50.0%
CAAGGCCAAAGGAGAAAGGA+AGG + chr7.2:71575624-71575643 MS.gene99835:intron 50.0%
CCTCCAGACACTCAATCCTT+CGG - chr7.2:71573951-71573970 None:intergenic 50.0%
CGTCCAGTTACATCAGCCAT+TGG + chr7.2:71575413-71575432 MS.gene99835:intron 50.0%
CGTTCCCGAAAGAATCAACC+AGG - chr7.2:71574446-71574465 None:intergenic 50.0%
GAACCGAAGGATTGAGTGTC+TGG + chr7.2:71573945-71573964 MS.gene99835:CDS 50.0%
GAAGCAAGCAATACCGAAGG+AGG + chr7.2:71574609-71574628 MS.gene99835:CDS 50.0%
GATGCCGAATACTGGTGGAA+AGG + chr7.2:71574912-71574931 MS.gene99835:intron 50.0%
GCCCTTAGGCTTACATACTC+AGG - chr7.2:71574157-71574176 None:intergenic 50.0%
GCTACAAGGCCAAAGGAGAA+AGG + chr7.2:71575620-71575639 MS.gene99835:intron 50.0%
GCTCTCACATTGTTCACCAC+AGG - chr7.2:71575602-71575621 None:intergenic 50.0%
GGAAGTCATTGAGTCACTCG+GGG + chr7.2:71573923-71573942 MS.gene99835:CDS 50.0%
GGAGAAGCAAGCAATACCGA+AGG + chr7.2:71574606-71574625 MS.gene99835:CDS 50.0%
GGCTGATGTAACTGGACGAT+AGG - chr7.2:71575411-71575430 None:intergenic 50.0%
GGGAAGTCATTGAGTCACTC+GGG + chr7.2:71573922-71573941 MS.gene99835:CDS 50.0%
GGGGAAGTCATTGAGTCACT+CGG + chr7.2:71573921-71573940 MS.gene99835:CDS 50.0%
TGTGAGAGCTACAAGGCCAA+AGG + chr7.2:71575613-71575632 MS.gene99835:intron 50.0%
! ATCAATCGAGGAAGTGTGGG+CGG + chr7.2:71575281-71575300 MS.gene99835:CDS 50.0%
! GAGGTGTCCTGACGAAGTAA+AGG + chr7.2:71574860-71574879 MS.gene99835:CDS 50.0%
CCGAAGGATTGAGTGTCTGG+AGG + chr7.2:71573948-71573967 MS.gene99835:CDS 55.0%
GACACATGGCTAGGGAATGC+AGG + chr7.2:71575561-71575580 MS.gene99835:intron 55.0%
TGGGAGATGCCGAATACTGG+TGG + chr7.2:71574907-71574926 MS.gene99835:intron 55.0%
GAAGTGTGGGCGGACCATCT+AGG + chr7.2:71575291-71575310 MS.gene99835:CDS 60.0%
TGAGTCACTCGGGGAACCGA+AGG + chr7.2:71573932-71573951 MS.gene99835:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 71573916 71576023 71573916 ID=MS.gene99835
chr7.2 mRNA 71573916 71576023 71573916 ID=MS.gene99835.t1;Parent=MS.gene99835
chr7.2 exon 71573916 71574033 71573916 ID=MS.gene99835.t1.exon1;Parent=MS.gene99835.t1
chr7.2 CDS 71573916 71574033 71573916 ID=cds.MS.gene99835.t1;Parent=MS.gene99835.t1
chr7.2 exon 71574595 71574881 71574595 ID=MS.gene99835.t1.exon2;Parent=MS.gene99835.t1
chr7.2 CDS 71574595 71574881 71574595 ID=cds.MS.gene99835.t1;Parent=MS.gene99835.t1
chr7.2 exon 71575134 71575312 71575134 ID=MS.gene99835.t1.exon3;Parent=MS.gene99835.t1
chr7.2 CDS 71575134 71575312 71575134 ID=cds.MS.gene99835.t1;Parent=MS.gene99835.t1
chr7.2 exon 71576014 71576023 71576014 ID=MS.gene99835.t1.exon4;Parent=MS.gene99835.t1
chr7.2 CDS 71576014 71576023 71576014 ID=cds.MS.gene99835.t1;Parent=MS.gene99835.t1
Gene Sequence

>MS.gene99835

ATGTCGGGGAAGTCATTGAGTCACTCGGGGAACCGAAGGATTGAGTGTCTGGAGGAAATAGGAGATGCAGTTTGGGAATTGGATATGGTGTCCCAAACACTGATATGCACAGGAATAAGTAGGACAACCATAGGAATCGAAAAACTAGTTATCTCTCATTATGTTTAATTAGTTTGACTTAAATATGACGTACTTTAACTTGCAGGTGTTTGTAAAATATCTAACTAACCCTGACAAGCCTGAGTATGTAAGCCTAAGGGCAAGATAATTAACGTCGTGTAGAATATATTGATGCATATTTTATATCCTTGTGTTTTATTTTTATGTTTTACGATCAAGAGCTAAGACTTTTATTAAAAAAAAAAATGCAAGAAAGATATTTATTTAAATTAAATTTTTAGTAACCAAATTAATTTACTAGTAAAAGTAAGATTTATGAACTTAATTCGCTTTAGACTCAAGTATCAAGACGTAACACCATTTTCTATCGTTACGGAAAATGGGGCGTTACATTAGTGGTATCAGAGCCTGGTTGATTCTTTCGGGAACGTTAGAGGATGTCTGTACTAATTACGTTTGTTTGTACTAACTTTGTATAGATTATTATATTATTTAATAATTAGGTTCTAACCAATTATGACTTTTAGGAACCCAATGACTCGTAGAAATAATCATATAGAAGCCGAAAATGGAGAAGCAAGCAATACCGAAGGAGGTATGGGAAGAGCTATTCAAGCTATGGCAGAAATGGCAGCAACCATTGCAGAACAAACTGCTGCAAAGGCTGAAAGGGATATTCGAAAGCAACAAAGGGAAGAAAGAAATGCTGAAAATAAAGGATTGGTAGATTTCAGACGTCACGATCCTCCACAATTTCTTGGAGAGACCGAACCAGAGAAAGCTGACTTTTGGCTCCAAGAGATAGAAAAGATATTCGCTGTGTTGAGGTGTCCTGACGAAGTAAAGGTAACATATGCATCTTACTTACTATTGGGAGATGCCGAATACTGGTGGAAAGGAACTCGCAAGATGATTGAAGCTAACAATCAAGATATTACTTGGGAAATATTTCGTACGAAATTTCTCGACAAGTATTTTCCTAGAAGTGCTAGGACTGCAAAGGAACAAGAATTTCTGACCCTGAAACAAGGAGGAATGACGATTGGAGAATATGCAGCAAAGTTTGAGTCGTTGGCAAAATATTTTCGTTTCTTTCAGGACCAAGTGGATGAAGATTGGCTATGTGAACGATTTGAAGGTGGACTGAAGCATAGCATCAAAGAATCTGTCTTGCCACTAGAAATTCGTCAATTCCAACCACTTGTAGAAAAATGCAGGAAGATAGAAGCAATGAAGGAAGGTGGAATCAATCGAGGAAGTGTGGGCGGACCATCTAGGTCTAAATATCCAACTCAAGGGTGGAATCATAAAGGAAAGCAGCCGTATAAAAAGCCTTACTCTCGAACTACGAGTAATAATCAGAATCAGCGACCCTATCGTCCAGTTACATCAGCCATTGGAAATGGATCAAACCAAAACCAGAATCAAGAACTCACTCGAAGGTGCTACAAATGTGGAAAACAAGATCATTTGGCTAACACTTGTTCGGAAACAGGAATAAAGTGTTTCAAATGTGGAGATATAGGACACATGGCTAGGGAATGCAGGAACCAAAAAGTTGAACCTGTGGTGAACAATGTGAGAGCTACAAGGCCAAAGGAGAAAGGAAGGGTTTATACTCTAAGTGGTGTTGAGGCTTCTCAATCTAAAGATCTTATACAAGGTAGTTGCGATATGACGGGTAATCTCTTAACTGTACTATTCGATTCTGGAGCAACTCATTCTTTTATCTCAATAGATCGTGTGAAACAATTGAGTTTGTTTGTAACACCACTGCCTTTTGATTTAATCATTTCTACTGCAACTGCTAAACCCATAGTTGCAAACACTGTTTGTTTAAAATGTCCTCTTGTCATCCACAATAGGAAATTTCTTGTTGACTTGATATGTTTGCCTTTAACACAATTAGATGTGATTTTAGGCATGGATTGGTTATCTTTCAACCATATCTTTTTAGACTGTGCACGTAAAACTGTAGTGTTTCCTGA
Protein sequence

>MS.gene99835.t1

MSGKSLSHSGNRRIECLEEIGDAVWELDMVSQTLICTGIKAENGEASNTEGGMGRAIQAMAEMAATIAEQTAAKAERDIRKQQREERNAENKGLVDFRRHDPPQFLGETEPEKADFWLQEIEKIFAVLRCPDEVKDQVDEDWLCERFEGGLKHSIKESVLPLEIRQFQPLVEKCRKIEAMKEGGINRGSVGGPSSVS