AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047970.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047970.01.T01 MTR_1g033840 62.784 352 55 4 148 423 80 431 9.58e-136 403
MsG0080047970.01.T01 MTR_1g033840 39.912 228 116 5 232 447 377 595 3.66e-34 135
MsG0080047970.01.T01 MTR_1g033830 61.719 128 13 3 7 124 167 268 1.27e-37 139
MsG0080047970.01.T01 MTR_1g033830 60.714 84 7 1 7 90 167 224 1.97e-20 90.1
MsG0080047970.01.T01 MTR_2g022880 38.462 130 44 3 5 124 152 255 3.65e-17 82.0
MsG0080047970.01.T01 MTR_4g131930 36.719 128 45 3 7 124 85 186 4.50e-15 74.3
MsG0080047970.01.T01 MTR_4g131930 36.719 128 45 3 7 124 148 249 9.22e-15 74.7
MsG0080047970.01.T01 MTR_4g094212 35.965 114 37 3 21 124 173 260 5.45e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047970.01.T01 AT5G13770 33.333 309 134 6 146 386 66 370 1.15e-39 150
MsG0080047970.01.T01 AT5G13770 32.870 216 112 7 253 447 379 582 5.63e-21 96.3
MsG0080047970.01.T01 AT2G02180 54.688 128 22 3 7 124 173 274 4.02e-32 124
MsG0080047970.01.T01 AT1G14530 52.344 128 25 3 7 124 163 264 2.07e-22 97.4
MsG0080047970.01.T01 AT1G14530 49.485 97 21 2 7 103 163 231 1.35e-18 85.5
MsG0080047970.01.T01 AT4G21790 38.889 126 41 3 9 124 163 262 5.59e-17 81.6

Find 71 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTCCCCTTGATGTAAT+TGG 0.184690 contig154end:+16047 MsG0080047970.01.T01:CDS
TTTGGCTTTGGTTCTGCTTT+TGG 0.210340 contig154end:+21289 MsG0080047970.01.T01:CDS
CTGTCTAAGGTGTTCTTTGC+AGG 0.219822 contig154end:+15849 MsG0080047970.01.T01:CDS
AAAGCTAGTTCATGCTTCTT+TGG 0.248495 contig154end:-21012 MsG0080047970.01.T01:intergenic
AGTTGTTTAGGTCAGATTTA+TGG 0.254704 contig154end:+21499 MsG0080047970.01.T01:CDS
GGTTTCTTTGTTTGCTGCCT+TGG 0.261980 contig154end:+15968 MsG0080047970.01.T01:CDS
AGTCATTAGGGAAATCTAAA+AGG 0.269969 contig154end:+21533 MsG0080047970.01.T01:CDS
AAGATGCTATTTACATGTTA+TGG 0.277323 contig154end:+21393 MsG0080047970.01.T01:CDS
ACAATAAGCTTCATATGTTT+AGG 0.309209 contig154end:+21317 MsG0080047970.01.T01:CDS
GGTGTTCTATGCGAGTCATT+AGG 0.312987 contig154end:+21520 MsG0080047970.01.T01:CDS
GATAGTGAAAATTGGTGTTT+TGG 0.340219 contig154end:+21271 MsG0080047970.01.T01:CDS
AGCGACTCTGATAGTTGTTT+AGG 0.343792 contig154end:+21487 MsG0080047970.01.T01:CDS
ATTTGTTAAGATTCAAGAAA+TGG 0.344396 contig154end:+21109 MsG0080047970.01.T01:CDS
CGTACTAGTCATTCTGTCTA+AGG 0.350388 contig154end:+15836 MsG0080047970.01.T01:CDS
CAGCTTCTTACGACGCCCTT+TGG 0.359651 contig154end:-16554 MsG0080047970.01.T01:intergenic
GTTTCTTTGTTTGCTGCCTT+GGG 0.359892 contig154end:+15969 MsG0080047970.01.T01:CDS
CGCGAGTTTGCGCAAGGTTG+AGG 0.368927 contig154end:+21642 MsG0080047970.01.T01:CDS
AGTCGGTATGGTTGACGAAT+TGG 0.373184 contig154end:+22375 MsG0080047970.01.T01:CDS
GTGTTCTATGCGAGTCATTA+GGG 0.378386 contig154end:+21521 MsG0080047970.01.T01:CDS
GGATGCCGATGTCAAGGTTT+CGG 0.380151 contig154end:+21797 MsG0080047970.01.T01:CDS
CGACGCCCTTTGGATTCAAC+AGG 0.380572 contig154end:-16544 MsG0080047970.01.T01:intergenic
TAGGATGGTCCATCACATTA+AGG 0.382104 contig154end:-18128 MsG0080047970.01.T01:intergenic
AGAAGCTGGAATGCAGTTAC+AGG 0.382861 contig154end:+22477 MsG0080047970.01.T01:CDS
TTAGTTCTGATAGTGAAAAT+TGG 0.401861 contig154end:+21263 MsG0080047970.01.T01:intron
TTTGTTAAGATTCAAGAAAT+GGG 0.403763 contig154end:+21110 MsG0080047970.01.T01:CDS
TATGTTTAGGAAAACTGTTA+TGG 0.411742 contig154end:+21330 MsG0080047970.01.T01:CDS
TGGTTTAACGTTGATTTCAT+TGG 0.417309 contig154end:-21075 MsG0080047970.01.T01:intergenic
GAATGAAACTTATTGCATCT+AGG 0.425639 contig154end:+16069 MsG0080047970.01.T01:CDS
TGCCTTGGGTTTCTTCTCTA+CGG 0.448769 contig154end:+15983 MsG0080047970.01.T01:CDS
ACTTCATATATTACCTGGTA+AGG 0.460801 contig154end:+18157 MsG0080047970.01.T01:CDS
CGCTTTCCTGTTGAATCCAA+AGG 0.469858 contig154end:+16538 MsG0080047970.01.T01:CDS
GAAATCAAACAGTGTTGCTA+TGG 0.472228 contig154end:+21366 MsG0080047970.01.T01:CDS
GATTTCATTGGTCTAAACTC+TGG 0.473657 contig154end:-21063 MsG0080047970.01.T01:intergenic
TTAGAGTGATGAACAAGAAA+GGG 0.473925 contig154end:+21578 MsG0080047970.01.T01:CDS
TTTCATTCCAATTACATCAA+GGG 0.474990 contig154end:-16054 MsG0080047970.01.T01:intergenic
AATTAAACAGTAAGAAGTAT+TGG 0.483507 contig154end:-18214 MsG0080047970.01.T01:intergenic
CAACGTTAAACCATGTGATA+AGG 0.485773 contig154end:+21085 MsG0080047970.01.T01:CDS
GTTTCATTCCAATTACATCA+AGG 0.486877 contig154end:-16055 MsG0080047970.01.T01:intergenic
GGTTTCTTCTCTACGGTGGA+AGG 0.504569 contig154end:+15990 MsG0080047970.01.T01:CDS
TTTAGAGTGATGAACAAGAA+AGG 0.507505 contig154end:+21577 MsG0080047970.01.T01:CDS
TAATATATGAAGTTTAGAAT+AGG 0.508408 contig154end:-18147 MsG0080047970.01.T01:intergenic
TTCATTCCAATTACATCAAG+GGG 0.512076 contig154end:-16053 MsG0080047970.01.T01:intergenic
GGAAGTTGTTGAGGCAATGA+AGG 0.514135 contig154end:+21776 MsG0080047970.01.T01:CDS
TTCTTTCGCGAGTTTGCGCA+AGG 0.520992 contig154end:+21636 MsG0080047970.01.T01:CDS
AGGTTTATTGGAGAAGACAT+TGG 0.528209 contig154end:+21755 MsG0080047970.01.T01:intron
GTCATTAGGGAAATCTAAAA+GGG 0.529755 contig154end:+21534 MsG0080047970.01.T01:CDS
GCTTTCCTGTTGAATCCAAA+GGG 0.544156 contig154end:+16539 MsG0080047970.01.T01:CDS
GGAATGCAGTTACAGGTAAG+TGG 0.544570 contig154end:+22484 MsG0080047970.01.T01:CDS
GCGCAAGGTTGAGGTTGTTG+AGG 0.551898 contig154end:+21651 MsG0080047970.01.T01:CDS
ATGGTTTCAGCAAAAGAAGA+GGG 0.556351 contig154end:+21844 MsG0080047970.01.T01:CDS
AAACGCGAACCTTAATGTGA+TGG 0.562294 contig154end:+18119 MsG0080047970.01.T01:CDS
TAAAGCTATGGCAGGTACAA+TGG 0.568088 contig154end:+22336 MsG0080047970.01.T01:CDS
GAAGACATTGGAAGTTGTTG+AGG 0.574489 contig154end:+21767 MsG0080047970.01.T01:intron
GGGTGTGATCGATAAAGCTA+TGG 0.578801 contig154end:+22324 MsG0080047970.01.T01:intron
TTACAAGACATGAAAATGGA+AGG 0.581049 contig154end:+22406 MsG0080047970.01.T01:CDS
GTGATCGATAAAGCTATGGC+AGG 0.588839 contig154end:+22328 MsG0080047970.01.T01:CDS
TCTAAACTTCATATATTACC+TGG 0.590927 contig154end:+18152 MsG0080047970.01.T01:CDS
GCTATGGCAGGTACAATGGT+TGG 0.592503 contig154end:+22340 MsG0080047970.01.T01:CDS
AATGAAGGATGCCGATGTCA+AGG 0.592763 contig154end:+21791 MsG0080047970.01.T01:CDS
AATGGTTTCAGCAAAAGAAG+AGG 0.593029 contig154end:+21843 MsG0080047970.01.T01:CDS
AGAGGCTATATCAGTCAGCA+TGG 0.604162 contig154end:+22443 MsG0080047970.01.T01:CDS
TTAACAAATACCTTATCACA+TGG 0.615210 contig154end:-21095 MsG0080047970.01.T01:intergenic
AGAATGACTAGTACGCTGAC+TGG 0.622590 contig154end:-15828 MsG0080047970.01.T01:intergenic
TGTGTACTCAAAAGTCGGTA+TGG 0.623003 contig154end:+22363 MsG0080047970.01.T01:CDS
GTTGGTGTGTACTCAAAAGT+CGG 0.625900 contig154end:+22358 MsG0080047970.01.T01:CDS
AAGGTACAAGATTAGATCAG+AGG 0.638310 contig154end:+22425 MsG0080047970.01.T01:CDS
CTTGGGTTTCTTCTCTACGG+TGG 0.639920 contig154end:+15986 MsG0080047970.01.T01:CDS
GCAATCCGAAACCTTGACAT+CGG 0.643065 contig154end:-21802 MsG0080047970.01.T01:intergenic
ATATGAAGTTTAGAATAGGA+TGG 0.649295 contig154end:-18143 MsG0080047970.01.T01:intergenic
CACCGTAGAGAAGAAACCCA+AGG 0.656367 contig154end:-15985 MsG0080047970.01.T01:intergenic
GCGTCGTAAGAAGCTGCAAG+AGG 0.671751 contig154end:+16561 MsG0080047970.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAGTAATTAAATAAT+AGG - contig154end:16799-16818 MsG0080047970.01.T01:intergenic 10.0%
!! AATTCATAAAATAATTTAGT+TGG + contig154end:19422-19441 MsG0080047970.01.T01:intron 10.0%
!! ATCAAAAATTGAAAAATTTA+AGG + contig154end:16375-16394 MsG0080047970.01.T01:intron 10.0%
!! ATTAGAGATATATTAATATT+TGG - contig154end:17319-17338 MsG0080047970.01.T01:intergenic 10.0%
!! TATGAATTATTATATTGAAT+AGG - contig154end:19410-19429 MsG0080047970.01.T01:intergenic 10.0%
!! TTTAATGATGTTATATATAT+TGG - contig154end:16943-16962 MsG0080047970.01.T01:intergenic 10.0%
!!! AATTTTGATTTAAAAATAGA+TGG - contig154end:18023-18042 MsG0080047970.01.T01:intergenic 10.0%
!!! ATTTCTTTTTTTTTTTTTGT+TGG + contig154end:16020-16039 MsG0080047970.01.T01:CDS 10.0%
!!! ATTTTGATTTAAAAATAGAT+GGG - contig154end:18022-18041 MsG0080047970.01.T01:intergenic 10.0%
!!! TACTGTTTAATTTTATTTTT+TGG + contig154end:18225-18244 MsG0080047970.01.T01:CDS 10.0%
!! AATTAAAATTATGAGTTGTT+AGG - contig154end:16700-16719 MsG0080047970.01.T01:intergenic 15.0%
!! ATAACATTAATAATCAAAGA+AGG + contig154end:19049-19068 MsG0080047970.01.T01:intron 15.0%
!! CTCTAATAAAGTAATTATTT+GGG + contig154end:17332-17351 MsG0080047970.01.T01:intron 15.0%
!! TAATATTTCAAATACATTGA+AGG + contig154end:19907-19926 MsG0080047970.01.T01:intron 15.0%
!! TCTCTAATAAAGTAATTATT+TGG + contig154end:17331-17350 MsG0080047970.01.T01:intron 15.0%
!! TTAAAACAATAAAGCAAAAA+TGG + contig154end:20452-20471 MsG0080047970.01.T01:intron 15.0%
!!! AGTAGTTCTATTATATTAAT+GGG - contig154end:16634-16653 MsG0080047970.01.T01:intergenic 15.0%
!!! ATTTTATTTTTTGGTAAGAT+TGG + contig154end:18234-18253 MsG0080047970.01.T01:intron 15.0%
!!! ATTTTTGCTTTATTGTTTTA+AGG - contig154end:20453-20472 MsG0080047970.01.T01:intergenic 15.0%
!!! TAATATATGAAGTTTAGAAT+AGG - contig154end:18150-18169 MsG0080047970.01.T01:intergenic 15.0%
!!! TAGTAGTTCTATTATATTAA+TGG - contig154end:16635-16654 MsG0080047970.01.T01:intergenic 15.0%
!!! TTCTTTATAAAGATTTTGAT+AGG + contig154end:19454-19473 MsG0080047970.01.T01:intron 15.0%
!!! TTTCGTTTATAAACTTTTTA+AGG - contig154end:20310-20329 MsG0080047970.01.T01:intergenic 15.0%
!!! TTTTGATTTAAAAATAGATG+GGG - contig154end:18021-18040 MsG0080047970.01.T01:intergenic 15.0%
!! ACAATAATCCATCAATTTAT+CGG + contig154end:19683-19702 MsG0080047970.01.T01:intron 20.0%
!! ATGTAACTAGAAAAAAAAAG+AGG + contig154end:17032-17051 MsG0080047970.01.T01:intron 20.0%
!! TACTCAAATCAATATAGTAT+TGG + contig154end:19997-20016 MsG0080047970.01.T01:intron 20.0%
!! TCAAAATCTTTATAAAGAAG+TGG - contig154end:19453-19472 MsG0080047970.01.T01:intergenic 20.0%
!! TCTATTATATTAATGGGATT+GGG - contig154end:16628-16647 MsG0080047970.01.T01:intergenic 20.0%
!! TTAAAATTCCGATAAATTGA+TGG - contig154end:19694-19713 MsG0080047970.01.T01:intergenic 20.0%
!! TTATAATATCTATTTGTCTG+TGG + contig154end:20027-20046 MsG0080047970.01.T01:intron 20.0%
!! TTCTATTATATTAATGGGAT+TGG - contig154end:16629-16648 MsG0080047970.01.T01:intergenic 20.0%
!! TTTGTTAAGATTCAAGAAAT+GGG + contig154end:21110-21129 MsG0080047970.01.T01:CDS 20.0%
!!! AAATCAAAATTGATTCCTAT+TGG + contig154end:18032-18051 MsG0080047970.01.T01:intron 20.0%
!!! AATTAAACAGTAAGAAGTAT+TGG - contig154end:18217-18236 MsG0080047970.01.T01:intergenic 20.0%
!!! AATTTGAATGATTTTCTATG+TGG + contig154end:20976-20995 MsG0080047970.01.T01:CDS 20.0%
!!! ATTTCCTTTTTGAATTCTTA+AGG + contig154end:16909-16928 MsG0080047970.01.T01:intron 20.0%
!!! ATTTGAATGATTTTCTATGT+GGG + contig154end:20977-20996 MsG0080047970.01.T01:CDS 20.0%
!!! ATTTGTTAAGATTCAAGAAA+TGG + contig154end:21109-21128 MsG0080047970.01.T01:CDS 20.0%
!!! ATTTTATGTGCTATTATCAA+TGG + contig154end:21825-21844 MsG0080047970.01.T01:CDS 20.0%
!!! GAAATTCAGACTTTATTTAA+GGG + contig154end:19620-19639 MsG0080047970.01.T01:intron 20.0%
!!! TGAAATATTAAATTAGTCTC+TGG - contig154end:19897-19916 MsG0080047970.01.T01:intergenic 20.0%
!!! TGAAATTCAGACTTTATTTA+AGG + contig154end:19619-19638 MsG0080047970.01.T01:intron 20.0%
!!! TTGATAATTGAAAGAAGTAA+AGG - contig154end:15900-15919 MsG0080047970.01.T01:intergenic 20.0%
! AATGAGTATAGACTCAATAA+GGG + contig154end:22304-22323 MsG0080047970.01.T01:intron 25.0%
! AATTCCTATAACCTAAACAT+GGG - contig154end:17797-17816 MsG0080047970.01.T01:intergenic 25.0%
! ACAAAGAAAATGTAGTTCAA+AGG - contig154end:19589-19608 MsG0080047970.01.T01:intergenic 25.0%
! ACAATAAGCTTCATATGTTT+AGG + contig154end:21317-21336 MsG0080047970.01.T01:CDS 25.0%
! AGTAGTAACTAATTGACTAT+TGG + contig154end:19231-19250 MsG0080047970.01.T01:intron 25.0%
! ATAATTAAGAGCTATTAGTG+GGG + contig154end:17374-17393 MsG0080047970.01.T01:intron 25.0%
! CAATTTAAAAACCAACCAAT+AGG - contig154end:18050-18069 MsG0080047970.01.T01:intergenic 25.0%
! CAGAAAAGTTAACATCTAAA+TGG - contig154end:20921-20940 MsG0080047970.01.T01:intergenic 25.0%
! CCTTAATTTCAAAACGAAAT+AGG + contig154end:16966-16985 MsG0080047970.01.T01:intron 25.0%
! CTGTTATAAAAATTACCCTT+TGG - contig154end:18617-18636 MsG0080047970.01.T01:intergenic 25.0%
! GAATTGTAAATCCATACATT+TGG - contig154end:22128-22147 MsG0080047970.01.T01:intergenic 25.0%
! GAGAAGATAATAGAAAAAGA+AGG - contig154end:16340-16359 MsG0080047970.01.T01:intergenic 25.0%
! GATAATTAAGAGCTATTAGT+GGG + contig154end:17373-17392 MsG0080047970.01.T01:intron 25.0%
! TAATGAGTATAGACTCAATA+AGG + contig154end:22303-22322 MsG0080047970.01.T01:intron 25.0%
! TAATTCCTATAACCTAAACA+TGG - contig154end:17798-17817 MsG0080047970.01.T01:intergenic 25.0%
! TAGGAATTATCTAGAGATAA+AGG + contig154end:17809-17828 MsG0080047970.01.T01:intron 25.0%
! TATGTTTAGGAAAACTGTTA+TGG + contig154end:21330-21349 MsG0080047970.01.T01:CDS 25.0%
! TCTAAACTTCATATATTACC+TGG + contig154end:18152-18171 MsG0080047970.01.T01:CDS 25.0%
! TGATAATTAAGAGCTATTAG+TGG + contig154end:17372-17391 MsG0080047970.01.T01:intron 25.0%
! TTAACAAATACCTTATCACA+TGG - contig154end:21098-21117 MsG0080047970.01.T01:intergenic 25.0%
! TTAACATCTAAATGGATCAA+GGG - contig154end:20913-20932 MsG0080047970.01.T01:intergenic 25.0%
! TTCAAATTCTGATCAATTTC+TGG - contig154end:20964-20983 MsG0080047970.01.T01:intergenic 25.0%
! TTGCTAAGATGAAAGAAAAA+GGG + contig154end:22096-22115 MsG0080047970.01.T01:intron 25.0%
! TTTCATTCCAATTACATCAA+GGG - contig154end:16057-16076 MsG0080047970.01.T01:intergenic 25.0%
!! AACATTAACTCTTTTCGTAT+AGG - contig154end:19819-19838 MsG0080047970.01.T01:intergenic 25.0%
!! AAGATGCTATTTACATGTTA+TGG + contig154end:21393-21412 MsG0080047970.01.T01:CDS 25.0%
!! AAGTTAATCTTTTCTATGGT+TGG + contig154end:18640-18659 MsG0080047970.01.T01:intron 25.0%
!! AATAAGTGATGTTTCTTTTC+AGG + contig154end:17937-17956 MsG0080047970.01.T01:intron 25.0%
!! ACATTAACTCTTTTCGTATA+GGG - contig154end:19818-19837 MsG0080047970.01.T01:intergenic 25.0%
!! ACTTTTACAAGACATGAAAA+TGG + contig154end:22402-22421 MsG0080047970.01.T01:CDS 25.0%
!! AGTAAGTTACACTTCAATTT+TGG - contig154end:19981-20000 MsG0080047970.01.T01:intergenic 25.0%
!! ATATGAAGTTTAGAATAGGA+TGG - contig154end:18146-18165 MsG0080047970.01.T01:intergenic 25.0%
!! ATCAGTTTGTGAAGATTTTA+AGG + contig154end:21142-21161 MsG0080047970.01.T01:CDS 25.0%
!! ATCATTTTGTGGTGATATTA+TGG + contig154end:15799-15818 MsG0080047970.01.T01:CDS 25.0%
!! GAGAAAGTTAATCTTTTCTA+TGG + contig154end:18636-18655 MsG0080047970.01.T01:intron 25.0%
!! GTAAGTTACACTTCAATTTT+GGG - contig154end:19980-19999 MsG0080047970.01.T01:intergenic 25.0%
!! TAAGTTACACTTCAATTTTG+GGG - contig154end:19979-19998 MsG0080047970.01.T01:intergenic 25.0%
!! TCTAATATGTGAAGTATTCA+TGG + contig154end:19511-19530 MsG0080047970.01.T01:intron 25.0%
!! TTCAATTATCAAGACTTTTG+CGG + contig154end:15908-15927 MsG0080047970.01.T01:intron 25.0%
!! TTGTTGTTGAATGAAAATTG+TGG - contig154end:20660-20679 MsG0080047970.01.T01:intergenic 25.0%
!! TTTGGTTAGTTACAAATTGT+TGG - contig154end:20699-20718 MsG0080047970.01.T01:intergenic 25.0%
!! TTTTCTCATGGTTTCTTAAA+GGG + contig154end:16222-16241 MsG0080047970.01.T01:intron 25.0%
!! TTTTTCTCATGGTTTCTTAA+AGG + contig154end:16221-16240 MsG0080047970.01.T01:intron 25.0%
!!! AAGAAGTTTCTTCTAAAATG+GGG - contig154end:20882-20901 MsG0080047970.01.T01:intergenic 25.0%
!!! CCTATTTCGTTTTGAAATTA+AGG - contig154end:16969-16988 MsG0080047970.01.T01:intergenic 25.0%
!!! GAAGAAGTTTCTTCTAAAAT+GGG - contig154end:20883-20902 MsG0080047970.01.T01:intergenic 25.0%
!!! GAAGGACTATTTTAATATCA+TGG + contig154end:19845-19864 MsG0080047970.01.T01:intron 25.0%
!!! TTAGTTCTGATAGTGAAAAT+TGG + contig154end:21263-21282 MsG0080047970.01.T01:intron 25.0%
!!! TTTGCTTTATTGTTTTAAGG+AGG - contig154end:20450-20469 MsG0080047970.01.T01:intergenic 25.0%
!!! TTTTTTTGTGTTCTCAATTG+TGG + contig154end:18180-18199 MsG0080047970.01.T01:CDS 25.0%
AAGTTTGCATGGAAAAACTT+TGG - contig154end:20841-20860 MsG0080047970.01.T01:intergenic 30.0%
AATATCCTAACTAGATCCAA+AGG - contig154end:18265-18284 MsG0080047970.01.T01:intergenic 30.0%
AATCAGTGATACTACAAAAG+TGG - contig154end:16479-16498 MsG0080047970.01.T01:intergenic 30.0%
AATTGCAACATGAATCTTGA+TGG + contig154end:19366-19385 MsG0080047970.01.T01:intron 30.0%
ACTTCATATATTACCTGGTA+AGG + contig154end:18157-18176 MsG0080047970.01.T01:CDS 30.0%
AGACATTACTGTTCCAATTA+TGG - contig154end:18832-18851 MsG0080047970.01.T01:intergenic 30.0%
AGTCATTAGGGAAATCTAAA+AGG + contig154end:21533-21552 MsG0080047970.01.T01:CDS 30.0%
AGTTGTTTAGGTCAGATTTA+TGG + contig154end:21499-21518 MsG0080047970.01.T01:CDS 30.0%
ATAACTTACACTAGCATCAT+TGG + contig154end:22236-22255 MsG0080047970.01.T01:intron 30.0%
ATAATAGACACCTGATATTG+TGG + contig154end:17086-17105 MsG0080047970.01.T01:intron 30.0%
ATATATGTACACCTTCCATT+CGG - contig154end:19270-19289 MsG0080047970.01.T01:intergenic 30.0%
ATATCAGGTGTCTATTATTC+TGG - contig154end:17084-17103 MsG0080047970.01.T01:intergenic 30.0%
ATATCCTAACTAGATCCAAA+GGG - contig154end:18264-18283 MsG0080047970.01.T01:intergenic 30.0%
ATCAGTGATACTACAAAAGT+GGG - contig154end:16478-16497 MsG0080047970.01.T01:intergenic 30.0%
ATCAGTGGCTGATTATTTAT+TGG + contig154end:18577-18596 MsG0080047970.01.T01:intron 30.0%
ATGAATAAGACCAAAGAAGA+AGG - contig154end:18472-18491 MsG0080047970.01.T01:intergenic 30.0%
ATGTAATGAGCAACCATAAT+TGG + contig154end:18816-18835 MsG0080047970.01.T01:intron 30.0%
ATTGACAGATTGAGAAATTG+TGG + contig154end:22177-22196 MsG0080047970.01.T01:intron 30.0%
ATTTCACCAGTTTCCTTATA+GGG - contig154end:17436-17455 MsG0080047970.01.T01:intergenic 30.0%
CAAGATACCAATCACATATT+AGG + contig154end:16095-16114 MsG0080047970.01.T01:intron 30.0%
CATGGGTTTATAGTTCATTA+AGG + contig154end:18680-18699 MsG0080047970.01.T01:intron 30.0%
CGAAGAAAGAAAATTCATCA+CGG - contig154end:18902-18921 MsG0080047970.01.T01:intergenic 30.0%
CGTTAAGATCTTTGTAATTG+AGG + contig154end:17637-17656 MsG0080047970.01.T01:intron 30.0%
CTAGTGTAAGTTATCTTATC+AGG - contig154end:22230-22249 MsG0080047970.01.T01:intergenic 30.0%
CTGGTAGCTTATACTAATAT+CGG - contig154end:19209-19228 MsG0080047970.01.T01:intergenic 30.0%
CTTAGTAACAAGTACAATGT+TGG - contig154end:18977-18996 MsG0080047970.01.T01:intergenic 30.0%
GAAATTTACATTACTGTCAC+TGG - contig154end:17683-17702 MsG0080047970.01.T01:intergenic 30.0%
GAATATAACATGTCAGATGA+GGG - contig154end:16733-16752 MsG0080047970.01.T01:intergenic 30.0%
GAATGAAACTTATTGCATCT+AGG + contig154end:16069-16088 MsG0080047970.01.T01:CDS 30.0%
GAATTATCTAGAGATAAAGG+AGG + contig154end:17812-17831 MsG0080047970.01.T01:intron 30.0%
GAATTTGACAGAGTGATTAA+TGG + contig154end:19094-19113 MsG0080047970.01.T01:intron 30.0%
GACTAACATAGTGTACAATT+AGG - contig154end:19723-19742 MsG0080047970.01.T01:intergenic 30.0%
GAGAGAATGGTTTCAAATAA+TGG + contig154end:17860-17879 MsG0080047970.01.T01:intron 30.0%
GATTGAAAATACCGAGAAAA+AGG + contig154end:18550-18569 MsG0080047970.01.T01:intron 30.0%
GCTACCTTAAGAATTCAAAA+AGG - contig154end:16916-16935 MsG0080047970.01.T01:intergenic 30.0%
GGAAATATTACCTTCTTCTT+TGG + contig154end:18459-18478 MsG0080047970.01.T01:intron 30.0%
GTATGTTGAAGAAGGTTTAT+TGG + contig154end:21743-21762 MsG0080047970.01.T01:intron 30.0%
GTCATTAGGGAAATCTAAAA+GGG + contig154end:21534-21553 MsG0080047970.01.T01:CDS 30.0%
GTTAACATCTAAATGGATCA+AGG - contig154end:20914-20933 MsG0080047970.01.T01:intergenic 30.0%
GTTGCTAAGATGAAAGAAAA+AGG + contig154end:22095-22114 MsG0080047970.01.T01:intron 30.0%
GTTTCATTCCAATTACATCA+AGG - contig154end:16058-16077 MsG0080047970.01.T01:intergenic 30.0%
TAACATCTAAATGGATCAAG+GGG - contig154end:20912-20931 MsG0080047970.01.T01:intergenic 30.0%
TACATAACATCTTCAACAGT+TGG + contig154end:20477-20496 MsG0080047970.01.T01:intron 30.0%
TAGTTGAGATATCCTTAGTT+TGG + contig154end:20611-20630 MsG0080047970.01.T01:intron 30.0%
TATTTGTATACTACAAGCTG+TGG - contig154end:16879-16898 MsG0080047970.01.T01:intergenic 30.0%
TCCTTGGAAGTTTATTTGTT+AGG + contig154end:16127-16146 MsG0080047970.01.T01:intron 30.0%
TGAATATAACATGTCAGATG+AGG - contig154end:16734-16753 MsG0080047970.01.T01:intergenic 30.0%
TTACAAGACATGAAAATGGA+AGG + contig154end:22406-22425 MsG0080047970.01.T01:CDS 30.0%
TTAGAGTGATGAACAAGAAA+GGG + contig154end:21578-21597 MsG0080047970.01.T01:CDS 30.0%
TTATTTGGGTAAGAGTTCTT+TGG + contig154end:17346-17365 MsG0080047970.01.T01:intron 30.0%
TTCATTCCAATTACATCAAG+GGG - contig154end:16056-16075 MsG0080047970.01.T01:intergenic 30.0%
TTGGATCTAGTTAGGATATT+GGG + contig154end:18265-18284 MsG0080047970.01.T01:intron 30.0%
TTTGGATCTAGTTAGGATAT+TGG + contig154end:18264-18283 MsG0080047970.01.T01:intron 30.0%
! AACAAGTACAATGTTGGTAA+TGG - contig154end:18971-18990 MsG0080047970.01.T01:intergenic 30.0%
! AGACTTTATTTAAGGGCTAA+TGG + contig154end:19627-19646 MsG0080047970.01.T01:intron 30.0%
! AGAGTTAATGTTAGCATTGA+AGG + contig154end:19827-19846 MsG0080047970.01.T01:intron 30.0%
! ATTTTGTGGTGATATTATGG+TGG + contig154end:15802-15821 MsG0080047970.01.T01:CDS 30.0%
! CAAAATTGATTCCTATTGGT+TGG + contig154end:18036-18055 MsG0080047970.01.T01:intron 30.0%
! CCTTGGAAGTTTATTTGTTA+GGG + contig154end:16128-16147 MsG0080047970.01.T01:intron 30.0%
! CGTGATGAATTTTCTTTCTT+CGG + contig154end:18900-18919 MsG0080047970.01.T01:intron 30.0%
! GGAAAAACTTTGGATTAGAA+GGG - contig154end:20831-20850 MsG0080047970.01.T01:intergenic 30.0%
! GGAAGAAGTTTCTTCTAAAA+TGG - contig154end:20884-20903 MsG0080047970.01.T01:intergenic 30.0%
! GTGATAATGTATGTTGAAGA+AGG + contig154end:21735-21754 MsG0080047970.01.T01:intron 30.0%
! GTGGATTTTTGCATTGTATT+TGG - contig154end:16860-16879 MsG0080047970.01.T01:intergenic 30.0%
! TGCATTGTATTTGGATTTTG+AGG - contig154end:16851-16870 MsG0080047970.01.T01:intergenic 30.0%
! TGGAAAAACTTTGGATTAGA+AGG - contig154end:20832-20851 MsG0080047970.01.T01:intergenic 30.0%
! TTAAGGGCTAATGGTTATTT+TGG + contig154end:19636-19655 MsG0080047970.01.T01:intron 30.0%
! TTTAGAGTGATGAACAAGAA+AGG + contig154end:21577-21596 MsG0080047970.01.T01:CDS 30.0%
! TTTCAATCTTTTCAGCGAAT+CGG - contig154end:18538-18557 MsG0080047970.01.T01:intergenic 30.0%
!! AGAAGTTTCTTCTAAAATGG+GGG - contig154end:20881-20900 MsG0080047970.01.T01:intergenic 30.0%
!! GATAGTGAAAATTGGTGTTT+TGG + contig154end:21271-21290 MsG0080047970.01.T01:CDS 30.0%
!! GTAACTAACCAAACTTGTTA+TGG + contig154end:20706-20725 MsG0080047970.01.T01:intron 30.0%
!! TGACTATTGGTTTGACTTAT+TGG + contig154end:19244-19263 MsG0080047970.01.T01:intron 30.0%
!! TGGTTTAACGTTGATTTCAT+TGG - contig154end:21078-21097 MsG0080047970.01.T01:intergenic 30.0%
!! TTTCCTTATCAGAAGTGTTA+TGG + contig154end:17991-18010 MsG0080047970.01.T01:intron 30.0%
!!! CGTAGACATTTTTGCTTTTT+TGG - contig154end:20542-20561 MsG0080047970.01.T01:intergenic 30.0%
!!! CTTTGGTCTTATTCATTTTG+AGG + contig154end:18476-18495 MsG0080047970.01.T01:intron 30.0%
!!! TGCTTCTGTTGTTTTTCATT+TGG - contig154end:19006-19025 MsG0080047970.01.T01:intergenic 30.0%
!!! TTTTGCTTTTTTGGCTTATG+TGG - contig154end:20533-20552 MsG0080047970.01.T01:intergenic 30.0%
!!! TTTTGGGGTAATAGTCATTT+TGG - contig154end:19964-19983 MsG0080047970.01.T01:intergenic 30.0%
AAAAGGGTAAGAGGAATAGT+GGG - contig154end:18418-18437 MsG0080047969.01.T01:intergenic 35.0%
AAAGCTAGTTCATGCTTCTT+TGG - contig154end:21015-21034 MsG0080047970.01.T01:intergenic 35.0%
AACATCTAAATGGATCAAGG+GGG - contig154end:20911-20930 MsG0080047970.01.T01:intergenic 35.0%
AACCATGAGAAAAACATTCG+AGG - contig154end:16215-16234 MsG0080047970.01.T01:intergenic 35.0%
AACCATTAAGTGAACTGTGA+AGG + contig154end:17285-17304 MsG0080047970.01.T01:intron 35.0%
AAGGTACAAGATTAGATCAG+AGG + contig154end:22425-22444 MsG0080047970.01.T01:CDS 35.0%
AATGGTTTCAGCAAAAGAAG+AGG + contig154end:21843-21862 MsG0080047970.01.T01:CDS 35.0%
AATTAAGTCAGACTGGGAAA+AGG - contig154end:19350-19369 MsG0080047970.01.T01:intergenic 35.0%
AATTCCAGCAAATCTGAACA+AGG - contig154end:19079-19098 MsG0080047970.01.T01:intergenic 35.0%
AATTCCTTGATTGACATGCA+TGG + contig154end:22143-22162 MsG0080047970.01.T01:intron 35.0%
AGGTTTATTGGAGAAGACAT+TGG + contig154end:21755-21774 MsG0080047970.01.T01:intron 35.0%
AGTGACAAAGCTTGTATCAT+GGG + contig154end:18663-18682 MsG0080047970.01.T01:intron 35.0%
ATAGTCTACACAAACCAGAT+AGG - contig154end:16504-16523 MsG0080047970.01.T01:intergenic 35.0%
ATATTGAAAGGCTATGAACC+CGG + contig154end:21899-21918 MsG0080047970.01.T01:intron 35.0%
ATGGTTTCAGCAAAAGAAGA+GGG + contig154end:21844-21863 MsG0080047970.01.T01:CDS 35.0%
ATGTCAGATGAGGGTAATTT+AGG - contig154end:16724-16743 MsG0080047970.01.T01:intergenic 35.0%
ATGTTGCAATTAAGTCAGAC+TGG - contig154end:19357-19376 MsG0080047970.01.T01:intergenic 35.0%
ATTGTGATGTATGGAAGAAC+AGG + contig154end:22048-22067 MsG0080047970.01.T01:intron 35.0%
CAACGTTAAACCATGTGATA+AGG + contig154end:21085-21104 MsG0080047970.01.T01:CDS 35.0%
CATCTTCAACAGTTGGAATA+TGG + contig154end:20484-20503 MsG0080047970.01.T01:intron 35.0%
CCAATCTGAAGAACATGAAA+TGG - contig154end:20732-20751 MsG0080047970.01.T01:intergenic 35.0%
CCATTTCATGTTCTTCAGAT+TGG + contig154end:20729-20748 MsG0080047970.01.T01:intron 35.0%
CCCTAACAAATAAACTTCCA+AGG - contig154end:16131-16150 MsG0080047970.01.T01:intergenic 35.0%
CTAAAAGCAAACGACGATAA+AGG + contig154end:21689-21708 MsG0080047970.01.T01:intron 35.0%
CTAAGGATATCTCAACTATG+TGG - contig154end:20609-20628 MsG0080047970.01.T01:intergenic 35.0%
CTATCTGCAGTCCAAATAAT+CGG + contig154end:16662-16681 MsG0080047970.01.T01:intron 35.0%
GAAAGGTAAATGAGAGAGAA+TGG + contig154end:17847-17866 MsG0080047970.01.T01:intron 35.0%
GAACACAAAAAAACCTTACC+AGG - contig154end:18173-18192 MsG0080047970.01.T01:intergenic 35.0%
GAGATATATAGCCTAGATCA+CGG - contig154end:17719-17738 MsG0080047970.01.T01:intergenic 35.0%
GATTTCACCAGTTTCCTTAT+AGG - contig154end:17437-17456 MsG0080047970.01.T01:intergenic 35.0%
GCATGATCCTAATATGTGAT+TGG - contig154end:16105-16124 MsG0080047970.01.T01:intergenic 35.0%
GGCAAGACAAGATATATAGA+AGG + contig154end:17757-17776 MsG0080047970.01.T01:intron 35.0%
GTCAATTAGTTACTACTGAC+TGG - contig154end:19228-19247 MsG0080047970.01.T01:intergenic 35.0%
TAATTAGGCTAAATCCCTAG+TGG - contig154end:17466-17485 MsG0080047970.01.T01:intergenic 35.0%
TAGTCTACACAAACCAGATA+GGG - contig154end:16503-16522 MsG0080047970.01.T01:intergenic 35.0%
TATCAACGATCCACAATATC+AGG - contig154end:17099-17118 MsG0080047970.01.T01:intergenic 35.0%
TATCCTAACTAGATCCAAAG+GGG - contig154end:18263-18282 MsG0080047970.01.T01:intergenic 35.0%
TATTAGGATCATGCAATCCT+TGG + contig154end:16111-16130 MsG0080047970.01.T01:intron 35.0%
TCAAGCATGATTGTGATGTA+TGG + contig154end:22039-22058 MsG0080047970.01.T01:intron 35.0%
TCACCATAACACTTCTGATA+AGG - contig154end:17997-18016 MsG0080047970.01.T01:intergenic 35.0%
TCCATAAATCTGTGTTTGTG+TGG + contig154end:18372-18391 MsG0080047970.01.T01:intron 35.0%
TGAAATGGCCATAACAAGTT+TGG - contig154end:20717-20736 MsG0080047970.01.T01:intergenic 35.0%
TGCTTTGTGACTTTGTCTAA+TGG + contig154end:18768-18787 MsG0080047970.01.T01:intron 35.0%
TGTTGCAATTAAGTCAGACT+GGG - contig154end:19356-19375 MsG0080047970.01.T01:intergenic 35.0%
TGTTGGAATAGGTAATTGAG+TGG + contig154end:17397-17416 MsG0080047970.01.T01:intron 35.0%
TTAGAGTGTGTACAAATGAG+TGG - contig154end:17589-17608 MsG0080047970.01.T01:intergenic 35.0%
TTCACAGTTCACTTAATGGT+TGG - contig154end:17286-17305 MsG0080047970.01.T01:intergenic 35.0%
TTCGAGAAGCTGATATTGAA+AGG + contig154end:21887-21906 MsG0080047970.01.T01:intron 35.0%
TTGTGACTTTGTCTAATGGT+TGG + contig154end:18772-18791 MsG0080047970.01.T01:intron 35.0%
TTGTGGTTGAGACATAATCA+TGG - contig154end:20643-20662 MsG0080047970.01.T01:intergenic 35.0%
TTTCACCAGTTTCCTTATAG+GGG - contig154end:17435-17454 MsG0080047970.01.T01:intergenic 35.0%
! AAAAGTGTGAAAAGGGTAAG+AGG - contig154end:18427-18446 MsG0080047970.01.T01:intergenic 35.0%
! ACACTCTAAATGTCGTGTTT+TGG + contig154end:17600-17619 MsG0080047970.01.T01:intron 35.0%
! ACTGCAACAAAAGTGTGAAA+AGG - contig154end:18435-18454 MsG0080047970.01.T01:intergenic 35.0%
! AGTTTATTTGTTAGGGCCTT+AGG + contig154end:16135-16154 MsG0080047970.01.T01:intron 35.0%
! CTGCAACAAAAGTGTGAAAA+GGG - contig154end:18434-18453 MsG0080047970.01.T01:intergenic 35.0%
! GAAATCAAACAGTGTTGCTA+TGG + contig154end:21366-21385 MsG0080047970.01.T01:CDS 35.0%
! GACTGAGGAGAGAATAATTT+TGG - contig154end:16829-16848 MsG0080047970.01.T01:intergenic 35.0%
! GATTTCATTGGTCTAAACTC+TGG - contig154end:21066-21085 MsG0080047970.01.T01:intergenic 35.0%
! GCGGTTTTTGCTAAGTAATA+TGG + contig154end:15927-15946 MsG0080047970.01.T01:intron 35.0%
! GGTATCAGAGCTTATCTTTT+TGG + contig154end:17562-17581 MsG0080047970.01.T01:intron 35.0%
! GTTTATTTGTTAGGGCCTTA+GGG + contig154end:16136-16155 MsG0080047970.01.T01:intron 35.0%
! TCATGGTTCTATCCAAACTA+AGG - contig154end:20626-20645 MsG0080047970.01.T01:intergenic 35.0%
! TCTTCCCATGTTTAGGTTAT+AGG + contig154end:17790-17809 MsG0080047970.01.T01:intron 35.0%
! TTCAATCTTTTCAGCGAATC+GGG - contig154end:18537-18556 MsG0080047970.01.T01:intergenic 35.0%
! TTTATTTGTTAGGGCCTTAG+GGG + contig154end:16137-16156 MsG0080047970.01.T01:intron 35.0%
! TTTCACACTTTTGTTGCAGT+TGG + contig154end:18435-18454 MsG0080047970.01.T01:intron 35.0%
! TTTTCCATGCATGTCAATCA+AGG - contig154end:22150-22169 MsG0080047970.01.T01:intergenic 35.0%
!! ATTCTGATCAATTTCTGGCT+TGG - contig154end:20959-20978 MsG0080047970.01.T01:intergenic 35.0%
!! TATTTGGATTTTGAGGACTG+AGG - contig154end:16844-16863 MsG0080047970.01.T01:intergenic 35.0%
!! TGATCTTCTAGTTTCACAGT+CGG + contig154end:17256-17275 MsG0080047970.01.T01:intron 35.0%
!! TGCAATGTGTACCGATTATT+TGG - contig154end:16676-16695 MsG0080047970.01.T01:intergenic 35.0%
!! TGCTATTTCTTCCCATGTTT+AGG + contig154end:17783-17802 MsG0080047970.01.T01:intron 35.0%
!! TTCTGTTAGAGTACTGGTAT+TGG + contig154end:16165-16184 MsG0080047970.01.T01:intron 35.0%
!! TTTTCTATGTGGGTTGTTTG+AGG + contig154end:20987-21006 MsG0080047970.01.T01:CDS 35.0%
!!! AGTGATGTTTCTTTTCAGGT+TGG + contig154end:17941-17960 MsG0080047970.01.T01:intron 35.0%
!!! GAAAATTGGTGTTTTGGCTT+TGG + contig154end:21277-21296 MsG0080047970.01.T01:CDS 35.0%
!!! GAATAGGTTTTGCTGTTGTT+TGG - contig154end:19394-19413 MsG0080047970.01.T01:intergenic 35.0%
!!! GTCGTGTTTTGGTATATTAG+CGG + contig154end:17611-17630 MsG0080047970.01.T01:intron 35.0%
!!! TCGTGTTTTGGTATATTAGC+GGG + contig154end:17612-17631 MsG0080047970.01.T01:intron 35.0%
AAACGCGAACCTTAATGTGA+TGG + contig154end:18119-18138 MsG0080047970.01.T01:CDS 40.0%
AACCCTTGGAAGGACTAATT+AGG - contig154end:17481-17500 MsG0080047970.01.T01:intergenic 40.0%
AAGAAGCTGAGAAGTTTGCA+TGG - contig154end:20852-20871 MsG0080047970.01.T01:intergenic 40.0%
AATCTCAAAAGCTAGCTCAG+GGG - contig154end:17516-17535 MsG0080047970.01.T01:intergenic 40.0%
ACAATCTTCAAGTACACCTC+GGG - contig154end:21717-21736 MsG0080047970.01.T01:intergenic 40.0%
ACTGGAGTATGTAGAAATGC+GGG - contig154end:17665-17684 MsG0080047970.01.T01:intergenic 40.0%
AGAAATTCTCAACCCTTGGA+AGG - contig154end:17491-17510 MsG0080047970.01.T01:intergenic 40.0%
AGCCTAATTAGTCCTTCCAA+GGG + contig154end:17476-17495 MsG0080047970.01.T01:intron 40.0%
AGCCTTCACAGTTCACTTAA+TGG - contig154end:17290-17309 MsG0080047970.01.T01:intergenic 40.0%
AGCGACTCTGATAGTTGTTT+AGG + contig154end:21487-21506 MsG0080047970.01.T01:CDS 40.0%
ATCGACCTCTTGCTAATAGA+AGG - contig154end:17219-17238 MsG0080047970.01.T01:intergenic 40.0%
ATTAGAAGGGAAATGACACG+TGG - contig154end:20818-20837 MsG0080047970.01.T01:intergenic 40.0%
ATTCATCAAGCTAGAACCAC+TGG - contig154end:19145-19164 MsG0080047970.01.T01:intergenic 40.0%
CAATCTCAAAAGCTAGCTCA+GGG - contig154end:17517-17536 MsG0080047970.01.T01:intergenic 40.0%
CACAATCTTCAAGTACACCT+CGG - contig154end:21718-21737 MsG0080047970.01.T01:intergenic 40.0%
CACTGGAGTATGTAGAAATG+CGG - contig154end:17666-17685 MsG0080047970.01.T01:intergenic 40.0%
CATACCTTGTTCAGATTTGC+TGG + contig154end:19072-19091 MsG0080047970.01.T01:intron 40.0%
CCTCTTGCTAATAGAAGGTA+AGG - contig154end:17214-17233 MsG0080047970.01.T01:intergenic 40.0%
CCTTACCTTCTATTAGCAAG+AGG + contig154end:17211-17230 MsG0080047970.01.T01:intron 40.0%
CGTACTAGTCATTCTGTCTA+AGG + contig154end:15836-15855 MsG0080047970.01.T01:CDS 40.0%
CTAGTTAGGATATTGGGTGT+GGG + contig154end:18271-18290 MsG0080047970.01.T01:intron 40.0%
CTCATCACACAACAGAATAG+CGG + contig154end:17736-17755 MsG0080047970.01.T01:intron 40.0%
GAAAAGGGTAAGAGGAATAG+TGG - contig154end:18419-18438 MsG0080047970.01.T01:intergenic 40.0%
GAAGACATTGGAAGTTGTTG+AGG + contig154end:21767-21786 MsG0080047970.01.T01:intron 40.0%
GAGTGACAAAGCTTGTATCA+TGG + contig154end:18662-18681 MsG0080047970.01.T01:intron 40.0%
GCACATTTCTGTTAGAGTAC+TGG + contig154end:16159-16178 MsG0080047970.01.T01:intron 40.0%
GCCACACAAACACAGATTTA+TGG - contig154end:18376-18395 MsG0080047970.01.T01:intergenic 40.0%
GCTTTCCTGTTGAATCCAAA+GGG + contig154end:16539-16558 MsG0080047970.01.T01:CDS 40.0%
GGATCATGCAGATTCTTAGA+TGG + contig154end:17541-17560 MsG0080047970.01.T01:intron 40.0%
GTGAAATCACACATCCACTA+GGG + contig154end:17449-17468 MsG0080047970.01.T01:intron 40.0%
GTGTTCTATGCGAGTCATTA+GGG + contig154end:21521-21540 MsG0080047970.01.T01:CDS 40.0%
GTTGGTGTGTACTCAAAAGT+CGG + contig154end:22358-22377 MsG0080047970.01.T01:CDS 40.0%
TAAAGCTATGGCAGGTACAA+TGG + contig154end:22336-22355 MsG0080047970.01.T01:CDS 40.0%
TAATAACTGCCACCATAGCA+GGG + contig154end:17146-17165 MsG0080047970.01.T01:intron 40.0%
TAGCCTAATTAGTCCTTCCA+AGG + contig154end:17475-17494 MsG0080047970.01.T01:intron 40.0%
TAGGATGGTCCATCACATTA+AGG - contig154end:18131-18150 MsG0080047970.01.T01:intergenic 40.0%
TATTGTGTGATACCACGCTT+TGG - contig154end:18511-18530 MsG0080047970.01.T01:intergenic 40.0%
TCAACTCCCCTTGATGTAAT+TGG + contig154end:16047-16066 MsG0080047970.01.T01:CDS 40.0%
TCAATCTCAAAAGCTAGCTC+AGG - contig154end:17518-17537 MsG0080047970.01.T01:intergenic 40.0%
TCTAGTTAGGATATTGGGTG+TGG + contig154end:18270-18289 MsG0080047970.01.T01:intron 40.0%
TGATGTATGGAAGAACAGGT+AGG + contig154end:22052-22071 MsG0080047970.01.T01:intron 40.0%
TGGGAAAAGGAAAAGATGAG+TGG - contig154end:19337-19356 MsG0080047970.01.T01:intergenic 40.0%
TGGTATACATGTTGCAACAG+CGG + contig154end:15947-15966 MsG0080047970.01.T01:intron 40.0%
TGTGTACTCAAAAGTCGGTA+TGG + contig154end:22363-22382 MsG0080047970.01.T01:CDS 40.0%
TTAGAACAAGTAGCAGCATC+AGG - contig154end:21182-21201 MsG0080047970.01.T01:intergenic 40.0%
TTCACCAGTTTCCTTATAGG+GGG - contig154end:17434-17453 MsG0080047970.01.T01:intergenic 40.0%
TTCGACGAGATGATGCAAAA+GGG + contig154end:21992-22011 MsG0080047970.01.T01:intron 40.0%
TTTCGACGAGATGATGCAAA+AGG + contig154end:21991-22010 MsG0080047970.01.T01:intron 40.0%
! AAGAAGAGGGTTTTCGTCTA+CGG + contig154end:21857-21876 MsG0080047970.01.T01:CDS 40.0%
! AAGGGTGCAAACCAAATGTA+TGG + contig154end:22114-22133 MsG0080047970.01.T01:intron 40.0%
! CTGCTTTGATATTTTGTCCG+AGG - contig154end:21964-21983 MsG0080047970.01.T01:intergenic 40.0%
! CTTTGATATTTTGTCCGAGG+CGG - contig154end:21961-21980 MsG0080047970.01.T01:intergenic 40.0%
! GCTGATTCTCATAGTCCAAA+GGG + contig154end:18599-18618 MsG0080047970.01.T01:intron 40.0%
! GTCCTCGAATGTTTTTCTCA+TGG + contig154end:16210-16229 MsG0080047970.01.T01:intron 40.0%
! GTTTCTTTGTTTGCTGCCTT+GGG + contig154end:15969-15988 MsG0080047970.01.T01:CDS 40.0%
! TGGAATGCTTTTACAGAAGC+TGG + contig154end:22463-22482 MsG0080047970.01.T01:CDS 40.0%
!! CACTGATTGCTCCTTTTTCT+CGG - contig154end:18564-18583 MsG0080047970.01.T01:intergenic 40.0%
!! GTATCACTGATTTCCCTATC+TGG + contig154end:16487-16506 MsG0080047970.01.T01:intron 40.0%
!! TATTAGTGGGGTGTTGGAAT+AGG + contig154end:17386-17405 MsG0080047970.01.T01:intron 40.0%
!!! GCTAGCTTTTGAGATTGAGT+TGG + contig154end:17520-17539 MsG0080047970.01.T01:intron 40.0%
!!! TTTGGCTTTGGTTCTGCTTT+TGG + contig154end:21289-21308 MsG0080047970.01.T01:CDS 40.0%
AAGAGCTATTAGTGGGGTGT+TGG + contig154end:17380-17399 MsG0080047970.01.T01:intron 45.0%
AATGAAGGATGCCGATGTCA+AGG + contig154end:21791-21810 MsG0080047970.01.T01:CDS 45.0%
AGAAGCTGGAATGCAGTTAC+AGG + contig154end:22477-22496 MsG0080047970.01.T01:CDS 45.0%
AGAATGACTAGTACGCTGAC+TGG - contig154end:15831-15850 MsG0080047970.01.T01:intergenic 45.0%
AGAGGCTATATCAGTCAGCA+TGG + contig154end:22443-22462 MsG0080047970.01.T01:CDS 45.0%
AGTCGGTATGGTTGACGAAT+TGG + contig154end:22375-22394 MsG0080047970.01.T01:CDS 45.0%
ATAAACGTGTATTGCCGCCT+CGG + contig154end:21944-21963 MsG0080047970.01.T01:intron 45.0%
ATAAAGGAGGAGAGAGAGAG+TGG + contig154end:17825-17844 MsG0080047970.01.T01:intron 45.0%
ATCAACAACCTCCCCCTATA+AGG + contig154end:17420-17439 MsG0080047970.01.T01:intron 45.0%
ATCAAGCTAGAACCACTGGA+TGG - contig154end:19141-19160 MsG0080047970.01.T01:intergenic 45.0%
ATCTCAAAAGCTAGCTCAGG+GGG - contig154end:17515-17534 MsG0080047970.01.T01:intergenic 45.0%
ATCTCAGTTGGTTACCAAGG+GGG - contig154end:18328-18347 MsG0080047970.01.T01:intergenic 45.0%
ATGGCTACTACAGAGTAACG+TGG + contig154end:20503-20522 MsG0080047970.01.T01:intron 45.0%
CACGTTTATCATCGAAGCGT+AGG - contig154end:21933-21952 MsG0080047970.01.T01:intergenic 45.0%
CATCTCAGTTGGTTACCAAG+GGG - contig154end:18329-18348 MsG0080047970.01.T01:intergenic 45.0%
CGAGAAAAAGGAGCAATCAG+TGG + contig154end:18562-18581 MsG0080047970.01.T01:intron 45.0%
CGCTTTCCTGTTGAATCCAA+AGG + contig154end:16538-16557 MsG0080047970.01.T01:CDS 45.0%
CTAACAGAAATGTGCCCCTA+AGG - contig154end:16154-16173 MsG0080047970.01.T01:intergenic 45.0%
GCAATCCGAAACCTTGACAT+CGG - contig154end:21805-21824 MsG0080047970.01.T01:intergenic 45.0%
GCATCTCAGTTGGTTACCAA+GGG - contig154end:18330-18349 MsG0080047970.01.T01:intergenic 45.0%
GCCACATGTCACTCTTCTAA+TGG + contig154end:20572-20591 MsG0080047970.01.T01:intron 45.0%
GCCATTAGAAGAGTGACATG+TGG - contig154end:20576-20595 MsG0080047970.01.T01:intergenic 45.0%
GGAAGTTGTTGAGGCAATGA+AGG + contig154end:21776-21795 MsG0080047970.01.T01:CDS 45.0%
GGAATGCAGTTACAGGTAAG+TGG + contig154end:22484-22503 MsG0080047970.01.T01:CDS 45.0%
GGGTGTGATCGATAAAGCTA+TGG + contig154end:22324-22343 MsG0080047970.01.T01:intron 45.0%
GGTGAAATCACACATCCACT+AGG + contig154end:17448-17467 MsG0080047970.01.T01:intron 45.0%
GGTGTTCTATGCGAGTCATT+AGG + contig154end:21520-21539 MsG0080047970.01.T01:CDS 45.0%
GTAATAACTGCCACCATAGC+AGG + contig154end:17145-17164 MsG0080047970.01.T01:intron 45.0%
GTGATCGATAAAGCTATGGC+AGG + contig154end:22328-22347 MsG0080047970.01.T01:CDS 45.0%
TAACCAACTGAGATGCCACT+CGG + contig154end:18334-18353 MsG0080047970.01.T01:intron 45.0%
TAGAAGAGTGACATGTGGCA+TGG - contig154end:20571-20590 MsG0080047970.01.T01:intergenic 45.0%
TCGACGAGATGATGCAAAAG+GGG + contig154end:21993-22012 MsG0080047970.01.T01:intron 45.0%
TGACCCCTTTGGATCTAGTT+AGG + contig154end:18257-18276 MsG0080047970.01.T01:intron 45.0%
TGACTTATTGGCCGAATGGA+AGG + contig154end:19256-19275 MsG0080047970.01.T01:intron 45.0%
TGCCTTGGGTTTCTTCTCTA+CGG + contig154end:15983-16002 MsG0080047970.01.T01:CDS 45.0%
! CAAGAGGTATGCAATCTGAC+AGG + contig154end:16577-16596 MsG0080047970.01.T01:intron 45.0%
! CACACTTTTGTTGCAGTTGG+TGG + contig154end:18438-18457 MsG0080047970.01.T01:intron 45.0%
! CTGTCTAAGGTGTTCTTTGC+AGG + contig154end:15849-15868 MsG0080047970.01.T01:CDS 45.0%
! GATGGCACAACCAAGTTGAA+GGG - contig154end:19123-19142 MsG0080047970.01.T01:intergenic 45.0%
! GGCTGATTCTCATAGTCCAA+AGG + contig154end:18598-18617 MsG0080047970.01.T01:intron 45.0%
! GGTTTCTTTGTTTGCTGCCT+TGG + contig154end:15968-15987 MsG0080047970.01.T01:CDS 45.0%
! GGTTTGACTTATTGGCCGAA+TGG + contig154end:19252-19271 MsG0080047970.01.T01:intron 45.0%
! TAAATGGATCAAGGGGGTGT+TGG - contig154end:20905-20924 MsG0080047970.01.T01:intergenic 45.0%
! TTAAACGCCTTTTAGCCGAG+TGG - contig154end:18352-18371 MsG0080047970.01.T01:intergenic 45.0%
! TTAATGGACGCCCTTCAACT+TGG + contig154end:19110-19129 MsG0080047970.01.T01:intron 45.0%
AACGACGATAAAGGATCCCG+AGG + contig154end:21698-21717 MsG0080047970.01.T01:intron 50.0%
AACTTGGTTGTGCCATCCAG+TGG + contig154end:19126-19145 MsG0080047970.01.T01:intron 50.0%
ACCAGTTTCCTTATAGGGGG+AGG - contig154end:17431-17450 MsG0080047970.01.T01:intergenic 50.0%
ACCATAGCAGGGTCTAGAGA+AGG + contig154end:17157-17176 MsG0080047970.01.T01:intron 50.0%
ACCTCCCCCTATAAGGAAAC+TGG + contig154end:17427-17446 MsG0080047970.01.T01:intron 50.0%
AGATCACGGCTGCTTAGAAG+CGG - contig154end:17705-17724 MsG0080047970.01.T01:intergenic 50.0%
CACCGTAGAGAAGAAACCCA+AGG - contig154end:15988-16007 MsG0080047970.01.T01:intergenic 50.0%
CCATAGCAGGGTCTAGAGAA+GGG + contig154end:17158-17177 MsG0080047970.01.T01:intron 50.0%
CTTCTAAGCAGCCGTGATCT+AGG + contig154end:17705-17724 MsG0080047970.01.T01:intron 50.0%
CTTGGGTTTCTTCTCTACGG+TGG + contig154end:15986-16005 MsG0080047970.01.T01:CDS 50.0%
GAATACAACCGTACCACAGG+AGG - contig154end:17189-17208 MsG0080047970.01.T01:intergenic 50.0%
GAGAAGGGTTAAACCTCCTG+TGG + contig154end:17173-17192 MsG0080047970.01.T01:intron 50.0%
GCTATGGCAGGTACAATGGT+TGG + contig154end:22340-22359 MsG0080047970.01.T01:CDS 50.0%
GCTGAATACAACCGTACCAC+AGG - contig154end:17192-17211 MsG0080047970.01.T01:intergenic 50.0%
GGATATTGGGTGTGGGTTCA+TGG + contig154end:18278-18297 MsG0080047970.01.T01:intron 50.0%
GGATGCCGATGTCAAGGTTT+CGG + contig154end:21797-21816 MsG0080047970.01.T01:CDS 50.0%
GGCATCTCAGTTGGTTACCA+AGG - contig154end:18331-18350 MsG0080047970.01.T01:intergenic 50.0%
GGGCAGAAATTCTCAACCCT+TGG - contig154end:17495-17514 MsG0080047970.01.T01:intergenic 50.0%
GGGTTAAACCTCCTGTGGTA+CGG + contig154end:17178-17197 MsG0080047970.01.T01:intron 50.0%
GGTTTCTTCTCTACGGTGGA+AGG + contig154end:15990-16009 MsG0080047970.01.T01:CDS 50.0%
TGAGATGCCACTCGGCTAAA+AGG + contig154end:18342-18361 MsG0080047970.01.T01:intron 50.0%
TGTGTGATACCACGCTTTGG+TGG - contig154end:18508-18527 MsG0080047970.01.T01:intergenic 50.0%
TTCTCTAGACCCTGCTATGG+TGG - contig154end:17158-17177 MsG0080047970.01.T01:intergenic 50.0%
TTCTTTCGCGAGTTTGCGCA+AGG + contig154end:21636-21655 MsG0080047970.01.T01:CDS 50.0%
! GGATGGCACAACCAAGTTGA+AGG - contig154end:19124-19143 MsG0080047970.01.T01:intergenic 50.0%
! GGTAAGATTGGTGACCCCTT+TGG + contig154end:18246-18265 MsG0080047970.01.T01:intron 50.0%
AGGAAGCTTCCACCAAAGCG+TGG + contig154end:18496-18515 MsG0080047970.01.T01:intron 55.0%
CAGCTTCTTACGACGCCCTT+TGG - contig154end:16557-16576 MsG0080047970.01.T01:intergenic 55.0%
CCCTTCTCTAGACCCTGCTA+TGG - contig154end:17161-17180 MsG0080047970.01.T01:intergenic 55.0%
CGAAGCGTAGGTGACTTGAC+CGG - contig154end:21921-21940 MsG0080047970.01.T01:intergenic 55.0%
CGACGCCCTTTGGATTCAAC+AGG - contig154end:16547-16566 MsG0080047970.01.T01:intergenic 55.0%
GAAGCGTAGGTGACTTGACC+GGG - contig154end:21920-21939 MsG0080047970.01.T01:intergenic 55.0%
GCGCAAGGTTGAGGTTGTTG+AGG + contig154end:21651-21670 MsG0080047970.01.T01:CDS 55.0%
GCGTCGTAAGAAGCTGCAAG+AGG + contig154end:16561-16580 MsG0080047970.01.T01:CDS 55.0%
GGAGGAGAGAGAGAGTGGAA+AGG + contig154end:17830-17849 MsG0080047970.01.T01:intron 55.0%
GTTGGTTACCAAGGGGGATG+TGG - contig154end:18322-18341 MsG0080047970.01.T01:intergenic 55.0%
TAGCCGAGTGGCATCTCAGT+TGG - contig154end:18340-18359 MsG0080047970.01.T01:intergenic 55.0%
CAAGGGGGATGTGGTGTTCG+AGG - contig154end:18313-18332 MsG0080047970.01.T01:intergenic 60.0%
CGCGAGTTTGCGCAAGGTTG+AGG + contig154end:21642-21661 MsG0080047970.01.T01:CDS 60.0%
CTCGAACACCACATCCCCCT+TGG + contig154end:18311-18330 MsG0080047970.01.T01:intron 60.0%
GGGGGATGTGGTGTTCGAGG+TGG - contig154end:18310-18329 MsG0080047970.01.T01:intergenic 65.0%
Chromosome Type Strat End Strand Name
contig154end gene 15792 22510 15792 ID=MsG0080047970.01;Name=MsG0080047970.01
contig154end mRNA 15792 22510 15792 ID=MsG0080047970.01.T01;Parent=MsG0080047970.01;Name=MsG0080047970.01.T01;_AED=0.43;_eAED=0.46;_QI=0|0.14|0.12|1|0.42|0.62|8|0|449
contig154end exon 15792 15870 15792 ID=MsG0080047970.01.T01:exon:12277;Parent=MsG0080047970.01.T01
contig154end exon 15967 16090 15967 ID=MsG0080047970.01.T01:exon:12276;Parent=MsG0080047970.01.T01
contig154end exon 16519 16582 16519 ID=MsG0080047970.01.T01:exon:12275;Parent=MsG0080047970.01.T01
contig154end exon 18072 18246 18072 ID=MsG0080047970.01.T01:exon:12274;Parent=MsG0080047970.01.T01
contig154end exon 20965 21163 20965 ID=MsG0080047970.01.T01:exon:12273;Parent=MsG0080047970.01.T01
contig154end exon 21267 21678 21267 ID=MsG0080047970.01.T01:exon:12272;Parent=MsG0080047970.01.T01
contig154end exon 21768 21878 21768 ID=MsG0080047970.01.T01:exon:12271;Parent=MsG0080047970.01.T01
contig154end exon 22325 22510 22325 ID=MsG0080047970.01.T01:exon:12270;Parent=MsG0080047970.01.T01
contig154end CDS 15792 15870 15792 ID=MsG0080047970.01.T01:cds;Parent=MsG0080047970.01.T01
contig154end CDS 15967 16090 15967 ID=MsG0080047970.01.T01:cds;Parent=MsG0080047970.01.T01
contig154end CDS 16519 16582 16519 ID=MsG0080047970.01.T01:cds;Parent=MsG0080047970.01.T01
contig154end CDS 18072 18246 18072 ID=MsG0080047970.01.T01:cds;Parent=MsG0080047970.01.T01
contig154end CDS 20965 21163 20965 ID=MsG0080047970.01.T01:cds;Parent=MsG0080047970.01.T01
contig154end CDS 21267 21678 21267 ID=MsG0080047970.01.T01:cds;Parent=MsG0080047970.01.T01
contig154end CDS 21768 21878 21768 ID=MsG0080047970.01.T01:cds;Parent=MsG0080047970.01.T01
contig154end CDS 22325 22510 22325 ID=MsG0080047970.01.T01:cds;Parent=MsG0080047970.01.T01
Gene Sequence

>MsG0080047970.01.T01

ATGTCAGATCATTTTGTGGTGATATTATGGTGGAAACCAGTCAGCGTACTAGTCATTCTGTCTAAGGTGTTCTTTGCAGCGGTTTCTTTGTTTGCTGCCTTGGGTTTCTTCTCTACGGTGGAAGGTATTTTAATTTCTTTTTTTTTTTTTGTTGGATTTTCAACTCCCCTTGATGTAATTGGAATGAAACTTATTGCATCTAGACTATTCTTGATGCTGCAACGCTTTCCTGTTGAATCCAAAGGGCGTCGTAAGAAGCTGCAAGAGTCTGATTGTATTTTGTTGTGTCAGATGTGCTTTAATGCATTTGATAAAAACGCGAACCTTAATGTGATGGACCATCCTATTCTAAACTTCATATATTACCTGGTAAGGTTTTTTTGTGTTCTCAATTGTGGTTCTTTTACTGCCAATACTTCTTACTGTTTAATTTTATTTTTTGAAATTGATCAGAATTTGAATGATTTTCTATGTGGGTTGTTTGAGGATCCAAAGAAGCATGAACTAGCTTTTGATTATTATCAAAGACTCAAAGATAGACCAGAGTTTAGACCAATGAAATCAACGTTAAACCATGTGATAAGGTATTTGTTAAGATTCAAGAAATGGGAGTTTTTATATCAGTTTGTGAAGATTTTAAGTTCTGATAGTGAAAATTGGTGTTTTGGCTTTGGTTCTGCTTTTGGAAGTTACAATAAGCTTCATATGTTTAGGAAAACTGTTATGGTTTTGAGAAAAATGAAATCAAACAGTGTTGCTATGGATTCAAGATGCTATTTACATGTTATGGAAGCTTATCTGAGACTTGATAAGTGTGAGAGAGTTGTTGAATTGTTTAATGAGTTTGAACGTAGAAAATTAAGCGACTCTGATAGTTGTTTAGGTCAGATTTATGGTGTTCTATGCGAGTCATTAGGGAAATCTAAAAGGGCTTTTGAAGCATTAGAGTACTTTAGAGTGATGAACAAGAAAGGGATTTCTGAGTACTCTATTTACTCTACATTGATATGTTCTTTCGCGAGTTTGCGCAAGGTTGAGGTTGTTGAGGAACTTAAGACATTGGAAGTTGTTGAGGCAATGAAGGATGCCGATGTCAAGGTTTCGGATTGCATTTTATGTGCTATTATCAATGGTTTCAGCAAAAGAAGAGGGTTTTCGTCTACGGGTGTGATCGATAAAGCTATGGCAGGTACAATGGTTGGTGTGTACTCAAAAGTCGGTATGGTTGACGAATTGGTGAAACTTTTACAAGACATGAAAATGGAAGGTACAAGATTAGATCAGAGGCTATATCAGTCAGCATGGAATGCTTTTACAGAAGCTGGAATGCAGTTACAGGTAAGTGGATGA
Protein sequence

>MsG0080047970.01.T01

MSDHFVVILWWKPVSVLVILSKVFFAAVSLFAALGFFSTVEGILISFFFFVGFSTPLDVIGMKLIASRLFLMLQRFPVESKGRRKKLQESDCILLCQMCFNAFDKNANLNVMDHPILNFIYYLVRFFCVLNCGSFTANTSYCLILFFEIDQNLNDFLCGLFEDPKKHELAFDYYQRLKDRPEFRPMKSTLNHVIRYLLRFKKWEFLYQFVKILSSDSENWCFGFGSAFGSYNKLHMFRKTVMVLRKMKSNSVAMDSRCYLHVMEAYLRLDKCERVVELFNEFERRKLSDSDSCLGQIYGVLCESLGKSKRAFEALEYFRVMNKKGISEYSIYSTLICSFASLRKVEVVEELKTLEVVEAMKDADVKVSDCILCAIINGFSKRRGFSSTGVIDKAMAGTMVGVYSKVGMVDELVKLLQDMKMEGTRLDQRLYQSAWNAFTEAGMQLQVSG*