AlfalfaGEDB | MsG0780041042.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041042.01

KEGG: K13126
GO: GO:0003676 GO:0003723 GO:0004190 GO:0006508
PFAM: PF00076 PF00658 PF14541 PF14543

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041042.01.T01	RDX99715.1	73.211	1090	242	12	3	1050	5	1086	0	1504

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041042.01.T01	Q9ZQA8	53.896	616	237	13	442	1052	31	604	0	612

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041042.01.T01	A0A371HAA6	73.211	1090	242	12	3	1050	5	1086	0.0	1504

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280010611.01	MsG0780041042.01	0.804324	2.281234e-49	1.172766e-46
MsG0380016666.01	MsG0780041042.01	0.807890	4.052109e-50	2.283603e-47
MsG0380016764.01	MsG0780041042.01	0.802564	5.285033e-49	2.597096e-46
MsG0480020229.01	MsG0780041042.01	0.815864	7.429666e-52	5.182395e-49
MsG0480023190.01	MsG0780041042.01	0.806272	8.917726e-50	4.820016e-47
MsG0480023452.01	MsG0780041042.01	0.813600	2.357541e-51	1.546410e-48
MsG0680033447.01	MsG0780041042.01	0.805667	1.194887e-49	6.359031e-47
MsG0780036509.01	MsG0780041042.01	0.804205	2.415027e-49	1.237740e-46
MsG0780036613.01	MsG0780041042.01	0.806909	6.542949e-50	3.594527e-47
MsG0780036620.01	MsG0780041042.01	0.821388	4.146652e-53	3.368864e-50

Showing 1 to 10 of 14 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0080047970.01	MsG0780041042.01	PPI
MsG0180000280.01	MsG0780041042.01	PPI
MsG0180005941.01	MsG0780041042.01	PPI
MsG0480020803.01	MsG0780041042.01	PPI
MsG0680035445.01	MsG0780041042.01	PPI
MsG0780039963.01	MsG0780041042.01	PPI
MsG0780039966.01	MsG0780041042.01	PPI
MsG0780041042.01	MsG0780040250.01	PPI
MsG0780041042.01	MsG0680035359.01	PPI
MsG0780041042.01	MsG0180001248.01	PPI

Showing 1 to 10 of 11 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041042.01.T01	MTR_7g102730	97.064	613	18	0	442	1054	17	629	0.0	1238
MsG0780041042.01.T01	MTR_7g102730	32.984	191	111	3	609	798	5	179	2.77e-23	106
MsG0780041042.01.T01	MTR_7g102750	85.000	480	15	2	1	423	1	480	0.0	814
MsG0780041042.01.T01	MTR_7g102750	83.614	415	11	2	1	358	1	415	0.0	688
MsG0780041042.01.T01	MTR_1g061870	56.767	532	179	8	442	963	22	512	0.0	564
MsG0780041042.01.T01	MTR_1g061870	33.508	191	110	2	609	798	10	184	7.45e-22	101
MsG0780041042.01.T01	MTR_1g061940	62.857	455	104	7	27	419	28	479	0.0	558
MsG0780041042.01.T01	MTR_2g084550	56.739	460	138	5	10	411	9	465	2.13e-164	493
MsG0780041042.01.T01	MTR_4g056420	53.030	462	158	5	7	411	5	464	9.82e-162	486
MsG0780041042.01.T01	MTR_4g085540	43.499	623	282	8	451	1038	50	637	1.28e-155	476

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041042.01.T01	AT2G36660	53.896	616	237	13	442	1052	31	604	0.0	612
MsG0780041042.01.T01	AT2G36660	30.435	184	111	3	616	798	26	193	8.62e-17	85.9
MsG0780041042.01.T01	AT2G36670	56.332	458	133	6	24	419	38	490	5.94e-169	506
MsG0780041042.01.T01	AT5G22850	55.405	444	137	6	22	407	24	464	8.25e-167	499
MsG0780041042.01.T01	AT2G36670	55.724	463	133	7	24	419	38	495	1.18e-166	500
MsG0780041042.01.T01	AT4G34110	44.975	607	291	10	437	1034	44	616	2.62e-154	472
MsG0780041042.01.T01	AT4G34110	32.258	186	109	2	614	798	36	205	4.43e-26	115
MsG0780041042.01.T01	AT2G36670	56.250	400	114	4	77	419	29	424	3.02e-146	444
MsG0780041042.01.T01	AT2G36670	56.250	400	114	4	77	419	29	424	3.02e-146	444
MsG0780041042.01.T01	AT1G08210	52.575	466	157	9	5	412	44	503	1.64e-142	438

Showing 1 to 10 of 184 entries

Previous1 2 3 4 5…19Next

Find 273 sgRNAs with CRISPR-Local

Find 863 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGACCGCGTATCGTC+TGG	0.456745	7:+85781830	MsG0780041042.01.T01:CDS
AAACTTGTACATGAAGAATT+TGG	0.219979	7:+85781871	MsG0780041042.01.T01:CDS
AAAGAAAGAATGAAATGAAT+AGG	0.319679	7:-85772196	None:intergenic
AAAGATTACTGGGATGCTTT+TGG	0.326476	7:+85784721	MsG0780041042.01.T01:CDS
AAAGATTCTGTATGTAGCCA+GGG	0.584998	7:+85782172	MsG0780041042.01.T01:CDS
AAAGGGATAAGCAAAGGATT+TGG	0.366064	7:+85782466	MsG0780041042.01.T01:CDS
AAAGTGATGTTACCGTCGTG+AGG	0.669948	7:-85781014	None:intergenic
AAAGTTGTAATGTCTGAGGA+TGG	0.526448	7:+85781530	MsG0780041042.01.T01:CDS
AAATATGCGCGTTCCTTTGT+TGG	0.394571	7:+85772285	MsG0780041042.01.T01:exon
AACCTAGCAGCAAAGATTAC+TGG	0.339509	7:+85784710	MsG0780041042.01.T01:CDS

Showing 1 to 10 of 273 entries

Previous1 2 3 4 5…28Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGTTAGTACAGTGAAA+TGG	-	Chr7:85774201-85774220	None:intergenic	30.0%
AAATGAAAAAATGACACGGA+GGG	-	Chr7:85779554-85779573	None:intergenic	30.0%
AAATTGGGTTAATCTTGTTC+AGG	+	Chr7:85772600-85772619	MsG0780041042.01.T01:intron	30.0%
AACATAACGAAAGGAAAGAA+TGG	-	Chr7:85772536-85772555	None:intergenic	30.0%
AACTGCAAGTTATTTGACAA+TGG	-	Chr7:85774681-85774700	None:intergenic	30.0%
AAGAAACCAACATTTGTGTT+AGG	-	Chr7:85774349-85774368	None:intergenic	30.0%
AAGAGAGAACATACTGTAAT+GGG	-	Chr7:85773771-85773790	None:intergenic	30.0%
AAGAGTCAAAAGCTATTCTT+TGG	+	Chr7:85777054-85777073	MsG0780041042.01.T01:intron	30.0%
AAGTTGAATGGATATCTTGT+TGG	+	Chr7:85781617-85781636	MsG0780041042.01.T01:CDS	30.0%
AATGAATATGAATGAGAGGA+TGG	-	Chr7:85780721-85780740	None:intergenic	30.0%

Showing 1 to 10 of 863 entries

Previous1 2 3 4 5…87Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	85772140	85785074	85772140	ID=MsG0780041042.01;Name=MsG0780041042.01
Chr7	mRNA	85772140	85785074	85772140	ID=MsG0780041042.01.T01;Parent=MsG0780041042.01;Name=MsG0780041042.01.T01;_AED=0.37;_eAED=0.37;_QI=149\|0.72\|0.73\|0.94\|1\|1\|19\|170\|1054
Chr7	exon	85772140	85772527	85772140	ID=MsG0780041042.01.T01:exon:19390;Parent=MsG0780041042.01.T01
Chr7	exon	85772622	85772751	85772622	ID=MsG0780041042.01.T01:exon:19391;Parent=MsG0780041042.01.T01
Chr7	exon	85773047	85773297	85773047	ID=MsG0780041042.01.T01:exon:19392;Parent=MsG0780041042.01.T01
Chr7	exon	85773549	85773776	85773549	ID=MsG0780041042.01.T01:exon:19393;Parent=MsG0780041042.01.T01
Chr7	exon	85774760	85774922	85774760	ID=MsG0780041042.01.T01:exon:19394;Parent=MsG0780041042.01.T01
Chr7	exon	85776339	85776402	85776339	ID=MsG0780041042.01.T01:exon:19395;Parent=MsG0780041042.01.T01
Chr7	exon	85776718	85776789	85776718	ID=MsG0780041042.01.T01:exon:19396;Parent=MsG0780041042.01.T01
Chr7	exon	85776869	85776984	85776869	ID=MsG0780041042.01.T01:exon:19397;Parent=MsG0780041042.01.T01
Chr7	exon	85778519	85778605	85778519	ID=MsG0780041042.01.T01:exon:19398;Parent=MsG0780041042.01.T01
Chr7	exon	85780909	85781023	85780909	ID=MsG0780041042.01.T01:exon:19399;Parent=MsG0780041042.01.T01
Chr7	exon	85781247	85781365	85781247	ID=MsG0780041042.01.T01:exon:19400;Parent=MsG0780041042.01.T01
Chr7	exon	85781458	85781651	85781458	ID=MsG0780041042.01.T01:exon:19401;Parent=MsG0780041042.01.T01
Chr7	exon	85781808	85782067	85781808	ID=MsG0780041042.01.T01:exon:19402;Parent=MsG0780041042.01.T01
Chr7	exon	85782168	85782274	85782168	ID=MsG0780041042.01.T01:exon:19403;Parent=MsG0780041042.01.T01
Chr7	exon	85782355	85782544	85782355	ID=MsG0780041042.01.T01:exon:19404;Parent=MsG0780041042.01.T01
Chr7	exon	85783446	85783735	85783446	ID=MsG0780041042.01.T01:exon:19405;Parent=MsG0780041042.01.T01
Chr7	exon	85783958	85784113	85783958	ID=MsG0780041042.01.T01:exon:19406;Parent=MsG0780041042.01.T01
Chr7	exon	85784432	85784617	85784432	ID=MsG0780041042.01.T01:exon:19407;Parent=MsG0780041042.01.T01
Chr7	exon	85784707	85785074	85784707	ID=MsG0780041042.01.T01:exon:19408;Parent=MsG0780041042.01.T01
Chr7	five_prime_UTR	85772140	85772288	85772140	ID=MsG0780041042.01.T01:five_prime_utr;Parent=MsG0780041042.01.T01
Chr7	CDS	85772289	85772527	85772289	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85772622	85772751	85772622	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85773047	85773297	85773047	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85773549	85773776	85773549	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85774760	85774922	85774760	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85776339	85776402	85776339	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85776718	85776789	85776718	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85776869	85776984	85776869	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85778519	85778605	85778519	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85780909	85781023	85780909	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85781247	85781365	85781247	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85781458	85781651	85781458	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85781808	85782067	85781808	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85782168	85782274	85782168	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85782355	85782544	85782355	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85783446	85783735	85783446	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85783958	85784113	85783958	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85784432	85784617	85784432	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	CDS	85784707	85784904	85784707	ID=MsG0780041042.01.T01:cds;Parent=MsG0780041042.01.T01
Chr7	three_prime_UTR	85784905	85785074	85784905	ID=MsG0780041042.01.T01:three_prime_utr;Parent=MsG0780041042.01.T01

Gene Sequence

>MsG0780041042.01.T01

ATGCGCGTTCCTTTGTTGGTGGCTTTGGCCGCATTGGCCGTGACGGTTACGGCCGTATGCGGCGGTTTTCCGGGGAGTTATCTTTCTCTTGAACGAACCATCCCTCTTAACCACCCAGTTGAACTCACCACTCTCAAAGCTCGCGACATAGCTCGTCACGGCGCTCGAATCTTGCAAGACGGCGGTGCTGGCATTCTTGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTAGTTGGGTTGTATTTTACTAAAGTGAAGATGGGTTCTCCTGCTAAAGAATTTTACGTTCAGATTGATACTGGAAGTGATATATTATGGCTTAATTGCAATACTTGCAATAATTGCCCGAAATCTAGTGGTTTAGGGATTGATCTCAATTACTTTGACACCGCAAGTTCATCCACTGCTGCGCTGGTTTCCTGCTCGGACCCAGTGTGCTCATATGCAGTTCAGACTGCTACAAGTCAGTGCTCTTCTCAGGCTAATCAGTGCAGCTACACTTTTCAGTATGGAGATGGAAGTGGGACGTCCGGTTATTATGTTTATGATGCTATGTATTTTGATGTGATCATGGGACAGTCTGTGTTTTCTAACTCTTCATCTACCGTTGTTTTTGGGTGTAGCACCTATCAGTCTGGGGATTTGGCTCGGACAGAAAAGGCAGTTGATGGAATTTTTGGGTTTGGTCCTGGTGCTTTGTCTGTTATATCACAAGTGTCATCACAAGGCCTGGCACCCAAAGTGTTCTCTCATTGCTTAAAGGGACAGGGCAGTGGAGGAGGCATACTGGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATACTCCACTTGTCCCATTACAGCCTCATTATAATTTAAATCTTCAAAGCATTGCGGTCAATGGACAAATTCTCCCAATCGATCAAGATGTATTTGCAACAGGTAACAATCGAGGAACTATAGTTGATTCCGGTACTACATTGGCATACCTTGTTCAAGAAGCTTATGATCCTTTTCTCAATGCTGATGGTGCTGCAATGTGGTGCATTGGTTTCCAAAAAGTGCAGAAGGGATACACAATTTTAGGAGATCTTGTCCTCAAAGATAAGATTTTTGTATACGACTTAGCTAATCAACGAATTGGATGGACCGACTATGATTGTTCCTTGGCTGTAAATGTCTCTGTGGCTACGAGCAAGAGTAAGGATGCATACCTCAGTGCAGGACAGATGAGTGTTAGCTCCTCACACATCAGCGTTCTCTCCAAGTTGCAACTTATTGAGAAACTTTCTTCATATGGTGTTAATTACAAATGCAAGAATGACTTTAGTATCACCTTACATATTCGGAGGCATGAGTACTCGCTTCACGATGCTTTCTCCGATTTCAAGACTCTCGCTTCTGTTCGCATTTGCAGAGACTCTTCCTCTGGTAAATCACTCTGTTATGGTTACGTCAACTTCCTCTCTCCTCACGACGCAATTCGTGCGATTGAGGTCAAGAATCATTCTACATTGAATGGAAAAGCGATAAGAGTCATGTGGTCACGTCGTGATCCTGATGCAAGGAAAAGTTGTATAGGGAACGTGTTTGTTAAGAATTTAGCTGAGTCAATAGATAATTCTGGATTAGAGGATATGTTTAAGAAGTTTGGGAATATTTTGTCAAGCAAAGTTGTAATGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAAACAGAGGAATCTGCAAATGCTGCTATTGACAAGTTGAATGGATATCTTGTTGGTGATAAGCAAATCTATGTTGGAAAGTTTGTCAAGAAAAGTGACCGCGTATCGTCTGGCCCGGATACTAGATATACAAACTTGTACATGAAGAATTTGGACTTAGATATTACAGAAAAATTTCTGTATGAAAAGTTTTCGTCTTTTGGGAATATCATTAGTTTGGCTGTTGCAAAGGACAGCAGTGGTATGTCAAAGGGTTTTGGCTTCGTGAACTTCGATAACCCAGAAGATGCTAAAAGGGCAATGGAAACAATGAATGGATTGCAACTAGGTTCAAAGATTCTGTATGTAGCCAGGGCACAGAAGAAGGCTGAGCGTGAGCAGATCTTGCACCAGCAATTCGAAGAGAAACGAAAGGAACAAGTCTTGAAATATAAGGGGTCAAACATTTATGTGAAGAATATTGATGACAATGTTAGTGATGAAGGACTGAGAGATCACTTTAGTGTATGTGGCACTATAACTTCTGCAAAGATTATGCGAGATGACAAAGGGATAAGCAAAGGATTTGGTTTTGTGTGCTTCTCCACTCCTGAGGAGGCTAATAAAGCTGTGAACTCTTTTCATGGATTCATGTTCCATGGTAAACCACTATATGTTGCTCTTGCTCAGCGGAAAGAGGACAGACAAGCACAGTTGCAGCTCCAATATGCCCAGCAAATTGCAGGACTCGCTGGGCCTTCAACTGCCATTGTCCCTGGTGGATATCCTCCTTTCTACTACACAGCTACTGGTGTTGTTTCACACGCGCCTCCTCGTGCTGGGCTCGTGTATCAGCCTATGGCATTGAGGCCTGGATGGAGGGCTAATGGCTCTGCACCTCCTGCCAGATCATTCCAACAGTCACCTACGCCTGTGGTTTCTAACAATAATACTAGGCAGCATAGGCAAAATAGGGGCAGGATGAATGGCCATGCAGTATCACAGGGAAATACTCACTCCGGTACATATATGCCACAAGCCCAGCAGGCTTCTCAGTCAGCGATCTCTTCAAGAGAGTCAAGTACTCAGCAGAGAACCGGGCAAGCAAAGTATGTACCTAGTGGGCGCCACCGTGAGATGGAAAAAGGATCTGGATTATCATCTAGTGGAGGATCCCTGGGACCAGAAGTGCTGCATAGCATGCTTGCTAATGCTACTCCAGAGCAGCAGAAGGAGATGCTTGGCGAGCATCTATACATGCTTGTCCAGAAAATCAAGCCTAACCTAGCAGCAAAGATTACTGGGATGCTTTTGGAGATGGACAATGCTGAATTGCTGGTTCTCATTGAGTCACCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTTTCCAAGTGCTGAAGAACTCTAAAGCTAAAGTTTCTGGTCAGGATGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCTGTGAACTAA

Protein sequence

>MsG0780041042.01.T01

MRVPLLVALAALAVTVTAVCGGFPGSYLSLERTIPLNHPVELTTLKARDIARHGARILQDGGAGILDFSVQGTSDPYLVGLYFTKVKMGSPAKEFYVQIDTGSDILWLNCNTCNNCPKSSGLGIDLNYFDTASSSTAALVSCSDPVCSYAVQTATSQCSSQANQCSYTFQYGDGSGTSGYYVYDAMYFDVIMGQSVFSNSSSTVVFGCSTYQSGDLARTEKAVDGIFGFGPGALSVISQVSSQGLAPKVFSHCLKGQGSGGGILVLGEILEPNIVYTPLVPLQPHYNLNLQSIAVNGQILPIDQDVFATGNNRGTIVDSGTTLAYLVQEAYDPFLNADGAAMWCIGFQKVQKGYTILGDLVLKDKIFVYDLANQRIGWTDYDCSLAVNVSVATSKSKDAYLSAGQMSVSSSHISVLSKLQLIEKLSSYGVNYKCKNDFSITLHIRRHEYSLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIDKLNGYLVGDKQIYVGKFVKKSDRVSSGPDTRYTNLYMKNLDLDITEKFLYEKFSSFGNIISLAVAKDSSGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQQIAGLAGPSTAIVPGGYPPFYYTATGVVSHAPPRAGLVYQPMALRPGWRANGSAPPARSFQQSPTPVVSNNNTRQHRQNRGRMNGHAVSQGNTHSGTYMPQAQQASQSAISSRESSTQQRTGQAKYVPSGRHREMEKGSGLSSSGGSLGPEVLHSMLANATPEQQKEMLGEHLYMLVQKIKPNLAAKITGMLLEMDNAELLVLIESPESLSAKVEEAFQVLKNSKAKVSGQDVLHSNFLSAEVAVN*