AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024982.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024982.01.T01 MTR_5g020640 98.077 312 6 0 1 312 1 312 0.0 640
MsG0580024982.01.T01 MTR_5g020640 96.567 233 8 0 1 233 1 233 2.58e-169 469
MsG0580024982.01.T01 MTR_5g009670 32.526 289 176 7 41 312 15 301 1.24e-42 149
MsG0580024982.01.T01 MTR_2g036810 33.449 287 170 7 43 310 14 298 5.37e-41 145
MsG0580024982.01.T01 MTR_4g005740 31.633 294 180 7 36 310 3 294 2.97e-38 138
MsG0580024982.01.T01 MTR_6g004520 32.404 287 176 7 39 310 1 284 1.06e-36 133
MsG0580024982.01.T01 MTR_6g004520 32.404 287 176 7 39 310 48 331 2.59e-36 134
MsG0580024982.01.T01 MTR_6g004520 32.404 287 176 7 39 310 59 342 2.66e-36 134
MsG0580024982.01.T01 MTR_7g116910 31.034 290 180 7 40 311 13 300 9.98e-36 131
MsG0580024982.01.T01 MTR_5g009670 35.377 212 128 4 41 245 15 224 1.34e-34 127
MsG0580024982.01.T01 MTR_4g092780 31.317 281 173 7 50 312 23 301 4.57e-34 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024982.01.T01 AT5G66530 78.623 276 59 0 37 312 32 307 1.23e-167 468
MsG0580024982.01.T01 AT5G66530 78.623 276 59 0 37 312 32 307 1.23e-167 468
MsG0580024982.01.T01 AT5G66530 78.623 276 59 0 37 312 32 307 1.23e-167 468
MsG0580024982.01.T01 AT5G66530 78.623 276 59 0 37 312 4 279 1.86e-167 466
MsG0580024982.01.T01 AT5G57330 33.333 294 163 8 42 310 9 294 4.89e-41 145
MsG0580024982.01.T01 AT4G23730 33.929 280 164 8 52 312 26 303 5.58e-41 145
MsG0580024982.01.T01 AT3G01590 33.798 287 164 8 45 312 8 287 2.87e-40 143
MsG0580024982.01.T01 AT3G01590 33.798 287 164 8 45 312 8 287 2.87e-40 143
MsG0580024982.01.T01 AT4G23730 33.566 286 163 9 52 312 26 309 3.40e-39 140
MsG0580024982.01.T01 AT5G14500 32.246 276 170 6 52 312 14 287 9.44e-39 139
MsG0580024982.01.T01 AT4G23730 34.328 268 155 8 64 312 3 268 1.63e-38 137
MsG0580024982.01.T01 AT4G25900 31.834 289 167 10 44 312 34 312 3.27e-38 138
MsG0580024982.01.T01 AT5G14500 29.568 301 170 7 52 312 14 312 3.84e-33 125
MsG0580024982.01.T01 AT3G61610 31.408 277 170 7 52 310 19 293 6.02e-33 124
MsG0580024982.01.T01 AT3G61610 31.408 277 170 7 52 310 25 299 6.81e-33 124

Find 91 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCAGTAATTAACCTTAT+TGG 0.152754 5:-12489482 None:intergenic
CTACCCTCAATTGGATTATT+AGG 0.155007 5:-12490884 None:intergenic
TCTCGCTTCCAAATTCTATT+TGG 0.158971 5:+12492032 MsG0580024982.01.T01:three_prime_UTR
TATGTGGGATTTCAGCTTTC+AGG 0.185644 5:+12490326 MsG0580024982.01.T01:CDS
TTCTATGTCCAAATAGAATT+TGG 0.194563 5:-12492040 None:intergenic
AAGCTACAATTTCCTGCTTT+TGG 0.212182 5:+12492069 MsG0580024982.01.T01:three_prime_UTR
GCATGGATTTGCAAGGAATT+TGG 0.218398 5:+12490221 MsG0580024982.01.T01:intron
TGGAATTGCATTTGCGAGTT+TGG 0.258103 5:+12489265 MsG0580024982.01.T01:CDS
CAGCTTTCAGGCTTTATATA+AGG 0.258159 5:+12490338 MsG0580024982.01.T01:CDS
GCATCAGTTAAGGGGTTAAA+AGG 0.284648 5:+12490833 MsG0580024982.01.T01:CDS
GTTGTATTGTGATTGAAATT+TGG 0.306186 5:+12489044 MsG0580024982.01.T01:five_prime_UTR
GGTTCTACATTTGCTATGTT+TGG 0.315155 5:+12491989 MsG0580024982.01.T01:three_prime_UTR
TGCCCTGCACACATACTTTC+GGG 0.318043 5:+12490543 MsG0580024982.01.T01:CDS
AAAAGAAGGTCTTTGCCATT+AGG 0.336299 5:-12489425 None:intergenic
GGAATTGCATTTGCGAGTTT+GGG 0.340131 5:+12489266 MsG0580024982.01.T01:CDS
CCACATTGCTTTCCACAGTT+TGG 0.343104 5:+12489906 MsG0580024982.01.T01:CDS
CTTTCTTCACTACCCTCAAT+TGG 0.356277 5:-12490893 None:intergenic
CTGCCCTGCACACATACTTT+CGG 0.358207 5:+12490542 MsG0580024982.01.T01:CDS
GATGAGTTGCAGCTTGATAA+TGG 0.362819 5:+12491461 MsG0580024982.01.T01:CDS
TTGGTGGTTGCATTACTTCT+TGG 0.364108 5:+12489396 MsG0580024982.01.T01:CDS
TGCTTTCCACAGTTTGGTCC+TGG 0.376361 5:+12489912 MsG0580024982.01.T01:CDS
TGTAAGTGGTGCATCAGTTA+AGG 0.379288 5:+12490823 MsG0580024982.01.T01:CDS
ACTTCTTGGAAAGTTCCTAA+TGG 0.402094 5:+12489410 MsG0580024982.01.T01:CDS
TCAATTGGATTATTAGGATC+TGG 0.402876 5:-12490878 None:intergenic
GGAGAAGTGAGAACGAGTTT+AGG 0.407959 5:-12489344 None:intergenic
GTAAGTGGTGCATCAGTTAA+GGG 0.409071 5:+12490824 MsG0580024982.01.T01:CDS
TAAACACAATCTACAAATCC+TGG 0.409510 5:-12491425 None:intergenic
TTAATAAGAAGAAACCAATA+AGG 0.410161 5:+12489468 MsG0580024982.01.T01:CDS
AGCTCGAGCCTGAACAAACT+TGG 0.418791 5:+12491925 MsG0580024982.01.T01:CDS
CACCACTAGCCAACTATTAG+TGG 0.418875 5:-12492191 None:intergenic
AGGGATGTGGTCACTTTCCC+AGG 0.421549 5:+12491407 MsG0580024982.01.T01:intron
ACAGCTGTCCAAGTTTGTTC+AGG 0.442315 5:-12491933 None:intergenic
TTCAGTTCCAGAGTTACAAC+AGG 0.450944 5:-12490282 None:intergenic
TTTACTAAGCCACTAATAGT+TGG 0.455991 5:+12492182 MsG0580024982.01.T01:three_prime_UTR
GAGGCTGAGATATATTTGTT+TGG 0.457612 5:+12489377 MsG0580024982.01.T01:CDS
AAATAATTGATAGGCCGGTT+CGG 0.458970 5:-12492116 None:intergenic
GATTTGCAAGGAATTTGGAT+TGG 0.464230 5:+12490226 MsG0580024982.01.T01:CDS
GTGGAAACGTGGTTCCGAAC+CGG 0.485039 5:+12492102 MsG0580024982.01.T01:three_prime_UTR
AGGAATTTGGATTGGACTGT+TGG 0.486366 5:+12490234 MsG0580024982.01.T01:CDS
GCTGAGATATATTTGTTTGG+TGG 0.488082 5:+12489380 MsG0580024982.01.T01:CDS
AGAACCGTGGTCGATACAAC+AGG 0.489570 5:+12489129 MsG0580024982.01.T01:CDS
AAGTTTGTTCAGGCTCGAGC+TGG 0.490832 5:-12491923 None:intergenic
CATGCTTCCATTTGAAGATG+AGG 0.495158 5:-12491628 None:intergenic
CTCGTTCTCACTTCTCCAGC+TGG 0.499996 5:+12489350 MsG0580024982.01.T01:CDS
GGGAAATCCTGTTGTAACTC+TGG 0.508439 5:+12490275 MsG0580024982.01.T01:CDS
GTGGAATCCTCATCTTCAAA+TGG 0.511002 5:+12491621 MsG0580024982.01.T01:CDS
TGGTCCTGGTGCAATTCAGC+AGG 0.511929 5:+12489926 MsG0580024982.01.T01:CDS
TTGCAGCTTGATAATGGCTT+GGG 0.512658 5:+12491467 MsG0580024982.01.T01:CDS
GATCCTAATAATCCAATTGA+GGG 0.513845 5:+12490881 MsG0580024982.01.T01:CDS
TACGTATAGTCGTGCTATGT+GGG 0.525395 5:+12490311 MsG0580024982.01.T01:CDS
TATACACAGGCTTCTGTAAG+TGG 0.527618 5:+12490809 MsG0580024982.01.T01:intron
ATCTCAGCCTCACTACCAGC+TGG 0.528382 5:-12489365 None:intergenic
AGATCCTAATAATCCAATTG+AGG 0.529404 5:+12490880 MsG0580024982.01.T01:CDS
TAATAGTTGGCTAGTGGTGA+GGG 0.539481 5:+12492195 MsG0580024982.01.T01:three_prime_UTR
TTACCCGAAAGTATGTGTGC+AGG 0.539592 5:-12490546 None:intergenic
ATTATACAGAAGATACATGT+TGG 0.543953 5:-12492157 None:intergenic
CACTTCTCCAGCTGGTAGTG+AGG 0.546966 5:+12489358 MsG0580024982.01.T01:CDS
CAATTGAGGGTAGTGAAGAA+AGG 0.553382 5:+12490894 MsG0580024982.01.T01:CDS
GTTGCAGCTTGATAATGGCT+TGG 0.558868 5:+12491466 MsG0580024982.01.T01:CDS
CTAATAGTTGGCTAGTGGTG+AGG 0.561355 5:+12492194 MsG0580024982.01.T01:three_prime_UTR
ACAATGTTACATATGTAATG+AGG 0.564932 5:-12492265 None:intergenic
ATCTTCGTAATGCAGGGATG+TGG 0.567372 5:+12491394 MsG0580024982.01.T01:intron
TTTAACAGCATGGATTTGCA+AGG 0.571252 5:+12490214 MsG0580024982.01.T01:intron
TACTTTGGGAGTGAAAGTTA+CGG 0.574092 5:+12489304 MsG0580024982.01.T01:CDS
GGGATTTGATAATTTGCGAG+AGG 0.586389 5:+12492215 MsG0580024982.01.T01:three_prime_UTR
ATACGTATAGTCGTGCTATG+TGG 0.586796 5:+12490310 MsG0580024982.01.T01:CDS
AAACACAATCTACAAATCCT+GGG 0.586977 5:-12491424 None:intergenic
GCTGGTCAGATGCGGTGTTG+TGG 0.588359 5:+12491602 MsG0580024982.01.T01:intron
TACCCGAAAGTATGTGTGCA+GGG 0.589772 5:-12490545 None:intergenic
TGTTTGTGTTGAAAATGCTA+AGG 0.590805 5:+12491663 MsG0580024982.01.T01:CDS
CACGGTTACTGATCATGCAA+TGG 0.591147 5:-12491967 None:intergenic
ACCGCACGACAACCAAAAGC+AGG 0.594748 5:-12492081 None:intergenic
TGTTGTAACTCTGGAACTGA+AGG 0.600817 5:+12490284 MsG0580024982.01.T01:CDS
CAAACTGTGGAAAGCAATGT+GGG 0.602638 5:-12489905 None:intergenic
GTGAAAGTTACGGAAGGTGA+AGG 0.603482 5:+12489314 MsG0580024982.01.T01:CDS
GTATCGACCACGGTTCTGAA+AGG 0.608253 5:-12489123 None:intergenic
CCCATGTAGCTGGTCAGATG+CGG 0.613904 5:+12491594 MsG0580024982.01.T01:intron
CCAAACTGTGGAAAGCAATG+TGG 0.616463 5:-12489906 None:intergenic
CATACCTGCTGAATTGCACC+AGG 0.622503 5:-12489930 None:intergenic
TAAGTGGTGCATCAGTTAAG+GGG 0.648460 5:+12490825 MsG0580024982.01.T01:CDS
GTTGTCGTGCGGTGGAAACG+TGG 0.651404 5:+12492091 MsG0580024982.01.T01:three_prime_UTR
AGCCACTAATAGTTGGCTAG+TGG 0.654669 5:+12492189 MsG0580024982.01.T01:three_prime_UTR
ACAGTTACCTTTCAGAACCG+TGG 0.663805 5:+12489116 MsG0580024982.01.T01:CDS
TTGGGAGTGAAAGTTACGGA+AGG 0.670040 5:+12489308 MsG0580024982.01.T01:CDS
TTAACCTGTTGTATCGACCA+CGG 0.670147 5:-12489133 None:intergenic
ATGGCTTCAATGGCATTCTG+TGG 0.671150 5:+12489086 MsG0580024982.01.T01:CDS
TGGTGATTCTGAGAATGTCG+AGG 0.688419 5:+12490254 MsG0580024982.01.T01:CDS
ATTGCACCAGGACCAAACTG+TGG 0.695286 5:-12489918 None:intergenic
ACATAGCAAATGTAGAACCA+CGG 0.703222 5:-12491985 None:intergenic
CATTGCATGATCAGTAACCG+TGG 0.704081 5:+12491968 MsG0580024982.01.T01:exon
GGTGATTCTGAGAATGTCGA+GGG 0.707768 5:+12490255 MsG0580024982.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAGAAAAAACTACTT+TGG + Chr5:12489289-12489308 MsG0580024982.01.T01:CDS 15.0%
!! AAGAAAATAACATTGAATAA+AGG - Chr5:12489958-12489977 None:intergenic 15.0%
!! AATAAAGAAAAAACTACTTT+GGG + Chr5:12489290-12489309 MsG0580024982.01.T01:CDS 15.0%
!! AATTTGAATAATCACTAAAT+AGG + Chr5:12490568-12490587 MsG0580024982.01.T01:intron 15.0%
!! AGTTTACAAACTTTATAAAA+AGG + Chr5:12491691-12491710 MsG0580024982.01.T01:intron 15.0%
!! ATTTGAATAATCACTAAATA+GGG + Chr5:12490569-12490588 MsG0580024982.01.T01:intron 15.0%
!!! TATTACATTGTTATTTACTA+AGG + Chr5:12489568-12489587 MsG0580024982.01.T01:intron 15.0%
!!! TTGAATATTATTTTGACATT+TGG + Chr5:12490606-12490625 MsG0580024982.01.T01:intron 15.0%
!! AGTTAAAAATACTGACAATA+AGG + Chr5:12490504-12490523 MsG0580024982.01.T01:CDS 20.0%
!! ATTTGGAAACAAAGAAAAAA+TGG + Chr5:12489061-12489080 MsG0580024982.01.T01:exon 20.0%
!! ATTTGGAAGAGAAAAAAAAA+AGG - Chr5:12489196-12489215 None:intergenic 20.0%
!! CAAGACAAAAAATAATTGAT+AGG - Chr5:12492128-12492147 None:intergenic 20.0%
!! GTATTATTTCATTCATTTAG+TGG + Chr5:12491199-12491218 MsG0580024982.01.T01:intron 20.0%
!! TCTTAAATTAAAACTTGACA+TGG + Chr5:12490944-12490963 MsG0580024982.01.T01:intron 20.0%
!! TGGTTTCTTCTTATTAAAAA+CGG - Chr5:12489465-12489484 None:intergenic 20.0%
!! TTAATAAGAAGAAACCAATA+AGG + Chr5:12489468-12489487 MsG0580024982.01.T01:CDS 20.0%
!! TTCAAATTCATACAAAATGA+GGG - Chr5:12491170-12491189 None:intergenic 20.0%
!!! ACAAAAATTTGATGACTAAT+TGG + Chr5:12490028-12490047 MsG0580024982.01.T01:intron 20.0%
!!! TTTATCATTCAATGCAATTT+TGG - Chr5:12491329-12491348 None:intergenic 20.0%
! ACAAAAAATAATTGATAGGC+CGG - Chr5:12492124-12492143 None:intergenic 25.0%
! ACAATGTTACATATGTAATG+AGG - Chr5:12492268-12492287 None:intergenic 25.0%
! AGAAAATTAATCAGTATCCA+AGG - Chr5:12489866-12489885 None:intergenic 25.0%
! ATAAAAAGTTGTACTACCTA+TGG + Chr5:12491048-12491067 MsG0580024982.01.T01:intron 25.0%
! ATAAGTGCTTATACTATAAG+TGG - Chr5:12489622-12489641 None:intergenic 25.0%
! ATTATACAGAAGATACATGT+TGG - Chr5:12492160-12492179 None:intergenic 25.0%
! CAACTCATTCAAACAATAAT+TGG - Chr5:12490705-12490724 None:intergenic 25.0%
! GAAAATTAATCAGTATCCAA+GGG - Chr5:12489865-12489884 None:intergenic 25.0%
! GTTCAAATTCATACAAAATG+AGG - Chr5:12491171-12491190 None:intergenic 25.0%
! GTTGAAATTATTCAAATGCA+TGG + Chr5:12490721-12490740 MsG0580024982.01.T01:intron 25.0%
! GTTGTATTGTGATTGAAATT+TGG + Chr5:12489044-12489063 MsG0580024982.01.T01:five_prime_UTR 25.0%
! TAAGTGCTTATACTATAAGT+GGG - Chr5:12489621-12489640 None:intergenic 25.0%
! TTACTACAAGCTAGAAAATT+TGG - Chr5:12489213-12489232 None:intergenic 25.0%
! TTCTATGTCCAAATAGAATT+TGG - Chr5:12492043-12492062 None:intergenic 25.0%
!! ATCATTTTGTCATTATACAC+AGG + Chr5:12490796-12490815 MsG0580024982.01.T01:intron 25.0%
!! CAACTTTTGTGCTTAATATT+TGG + Chr5:12490109-12490128 MsG0580024982.01.T01:intron 25.0%
!! GATAATTTGAAATACTCCAT+AGG - Chr5:12491067-12491086 None:intergenic 25.0%
!!! AATGCAATTTTGGTCTTATA+TGG - Chr5:12491319-12491338 None:intergenic 25.0%
!!! ATTCAATGTTATTTTCTTGC+AGG + Chr5:12489960-12489979 MsG0580024982.01.T01:intron 25.0%
!!! ATTTGATGACTAATTGGTTT+TGG + Chr5:12490034-12490053 MsG0580024982.01.T01:intron 25.0%
!!! CTATTTTTAATGCTTCAGAT+TGG + Chr5:12491894-12491913 MsG0580024982.01.T01:intron 25.0%
!!! GACTTGTTAAAATGTTTGTT+TGG + Chr5:12490184-12490203 MsG0580024982.01.T01:intron 25.0%
!!! GATACTGATTAATTTTCTTC+TGG + Chr5:12489868-12489887 MsG0580024982.01.T01:intron 25.0%
!!! TTTTTATTTTTGCGATGTAG+TGG + Chr5:12489245-12489264 MsG0580024982.01.T01:intron 25.0%
AAAATCATCTGTACTTGGTT+AGG - Chr5:12490679-12490698 None:intergenic 30.0%
AAACAAAGAAAAAATGGCGA+TGG + Chr5:12489067-12489086 MsG0580024982.01.T01:exon 30.0%
AAACACAATCTACAAATCCT+GGG - Chr5:12491427-12491446 None:intergenic 30.0%
ACATTTGGTATTATGTTTGC+TGG + Chr5:12490621-12490640 MsG0580024982.01.T01:intron 30.0%
AGATCCTAATAATCCAATTG+AGG + Chr5:12490880-12490899 MsG0580024982.01.T01:CDS 30.0%
ATAGAAAATCTTCGTAATGC+AGG + Chr5:12491387-12491406 MsG0580024982.01.T01:intron 30.0%
CATGAAATCACATCATGATT+TGG - Chr5:12490431-12490450 None:intergenic 30.0%
CTGTAACATACTTTACTTCT+GGG + Chr5:12490918-12490937 MsG0580024982.01.T01:intron 30.0%
GAAGCAGTAATTAACCTTAT+TGG - Chr5:12489485-12489504 None:intergenic 30.0%
GATCCTAATAATCCAATTGA+GGG + Chr5:12490881-12490900 MsG0580024982.01.T01:CDS 30.0%
GGTGATTGAATTCAAATAAC+TGG + Chr5:12491772-12491791 MsG0580024982.01.T01:intron 30.0%
TAAACACAATCTACAAATCC+TGG - Chr5:12491428-12491447 None:intergenic 30.0%
TAAACACTTGTGAGATTGTT+TGG - Chr5:12489790-12489809 None:intergenic 30.0%
TAGAAAATCTTCGTAATGCA+GGG + Chr5:12491388-12491407 MsG0580024982.01.T01:intron 30.0%
TCAATTGGATTATTAGGATC+TGG - Chr5:12490881-12490900 None:intergenic 30.0%
TCTGTAACATACTTTACTTC+TGG + Chr5:12490917-12490936 MsG0580024982.01.T01:intron 30.0%
TGTTTGTGTTGAAAATGCTA+AGG + Chr5:12491663-12491682 MsG0580024982.01.T01:CDS 30.0%
TTAAAACTTGACATGGTAAG+TGG + Chr5:12490951-12490970 MsG0580024982.01.T01:intron 30.0%
TTATTTACTAAGGCTCTGTT+TGG + Chr5:12489578-12489597 MsG0580024982.01.T01:intron 30.0%
TTGAAAATGTATCTGACACA+TGG - Chr5:12489524-12489543 None:intergenic 30.0%
TTTACTAAGCCACTAATAGT+TGG + Chr5:12492182-12492201 MsG0580024982.01.T01:three_prime_UTR 30.0%
! CAACTTTTTATCCAAACACT+TGG - Chr5:12491039-12491058 None:intergenic 30.0%
! GAAAGAAAACTATGGATTGA+TGG - Chr5:12489166-12489185 None:intergenic 30.0%
! GTTCATTTGAGTTTATCTAC+CGG - Chr5:12489815-12489834 None:intergenic 30.0%
!! ACATTTTCAATCTGAAGTGA+GGG + Chr5:12489534-12489553 MsG0580024982.01.T01:intron 30.0%
!! TACATTTTCAATCTGAAGTG+AGG + Chr5:12489533-12489552 MsG0580024982.01.T01:intron 30.0%
!!! CTTGTTTTAATAAGCTGTCT+TGG + Chr5:12489699-12489718 MsG0580024982.01.T01:intron 30.0%
!!! TTAATTTTCTTCTGGAACAG+TGG + Chr5:12489876-12489895 MsG0580024982.01.T01:intron 30.0%
AAAAGAAGGTCTTTGCCATT+AGG - Chr5:12489428-12489447 None:intergenic 35.0%
AAAGTGTAAGCACTTGACTT+GGG - Chr5:12491563-12491582 None:intergenic 35.0%
AAATAATTGATAGGCCGGTT+CGG - Chr5:12492119-12492138 None:intergenic 35.0%
AATCTCACAAGTGTTTATGC+CGG + Chr5:12489793-12489812 MsG0580024982.01.T01:intron 35.0%
ACATAGCAAATGTAGAACCA+CGG - Chr5:12491988-12492007 None:intergenic 35.0%
ACTTCTTGGAAAGTTCCTAA+TGG + Chr5:12489410-12489429 MsG0580024982.01.T01:CDS 35.0%
CAAAATGAGGGAGATAAAGA+AGG - Chr5:12491158-12491177 None:intergenic 35.0%
CTACCCTCAATTGGATTATT+AGG - Chr5:12490887-12490906 None:intergenic 35.0%
CTTCTTATTAAAAACGGCGT+CGG - Chr5:12489459-12489478 None:intergenic 35.0%
GAGGCTGAGATATATTTGTT+TGG + Chr5:12489377-12489396 MsG0580024982.01.T01:CDS 35.0%
GATTTGCAAGGAATTTGGAT+TGG + Chr5:12490226-12490245 MsG0580024982.01.T01:CDS 35.0%
GCACATGAAAATGCATGTAT+GGG - Chr5:12491108-12491127 None:intergenic 35.0%
GCTGAAGTGAAAGAAAACTA+TGG - Chr5:12489174-12489193 None:intergenic 35.0%
GCTGAGATATATTTGTTTGG+TGG + Chr5:12489380-12489399 MsG0580024982.01.T01:CDS 35.0%
GGATGAAAATCATCTGTACT+TGG - Chr5:12490684-12490703 None:intergenic 35.0%
TAAGTGGTAACTACTTGTAC+AGG + Chr5:12490967-12490986 MsG0580024982.01.T01:intron 35.0%
TCAAATGAACCAATCCAAAC+AGG + Chr5:12489825-12489844 MsG0580024982.01.T01:intron 35.0%
TCATGCAGTGTTATGATATC+TGG + Chr5:12491823-12491842 MsG0580024982.01.T01:intron 35.0%
TCTCGCTTCCAAATTCTATT+TGG + Chr5:12492032-12492051 MsG0580024982.01.T01:three_prime_UTR 35.0%
TGCACATGAAAATGCATGTA+TGG - Chr5:12491109-12491128 None:intergenic 35.0%
TGGTTGAGTATTTAACAGCA+TGG + Chr5:12490204-12490223 MsG0580024982.01.T01:intron 35.0%
TTCTTATTAAAAACGGCGTC+GGG - Chr5:12489458-12489477 None:intergenic 35.0%
TTTAACAGCATGGATTTGCA+AGG + Chr5:12490214-12490233 MsG0580024982.01.T01:intron 35.0%
TTTATCCAAACACTTGGCTA+AGG - Chr5:12491033-12491052 None:intergenic 35.0%
! AAGCTACAATTTCCTGCTTT+TGG + Chr5:12492069-12492088 MsG0580024982.01.T01:three_prime_UTR 35.0%
! ATGTTTGCTGGATATCTGAA+CGG + Chr5:12490633-12490652 MsG0580024982.01.T01:intron 35.0%
! CAGCTTTCAGGCTTTATATA+AGG + Chr5:12490338-12490357 MsG0580024982.01.T01:CDS 35.0%
! GGCTTTATATAAGGTTGTCA+AGG + Chr5:12490347-12490366 MsG0580024982.01.T01:intron 35.0%
! TACTTTGGGAGTGAAAGTTA+CGG + Chr5:12489304-12489323 MsG0580024982.01.T01:CDS 35.0%
!! GGTTCTACATTTGCTATGTT+TGG + Chr5:12491989-12492008 MsG0580024982.01.T01:three_prime_UTR 35.0%
AAAAATGGCGATGGCTTCAA+TGG + Chr5:12489076-12489095 MsG0580024982.01.T01:exon 40.0%
AAACACTTGGCTAAGGCTAA+GGG - Chr5:12491026-12491045 None:intergenic 40.0%
AAATTAGGGCCTGTTTGGAT+TGG - Chr5:12489837-12489856 None:intergenic 40.0%
AATCCAAACAGGCCCTAATT+TGG + Chr5:12489836-12489855 MsG0580024982.01.T01:intron 40.0%
ATACGTATAGTCGTGCTATG+TGG + Chr5:12490310-12490329 MsG0580024982.01.T01:CDS 40.0%
ATCCAAACAGGCCCTAATTT+GGG + Chr5:12489837-12489856 MsG0580024982.01.T01:intron 40.0%
ATCCAAGGGATCCCAAATTA+GGG - Chr5:12489851-12489870 None:intergenic 40.0%
ATGAGGGAGATAAAGAAGGT+AGG - Chr5:12491154-12491173 None:intergenic 40.0%
CAAACTGTGGAAAGCAATGT+GGG - Chr5:12489908-12489927 None:intergenic 40.0%
CAATTGAGGGTAGTGAAGAA+AGG + Chr5:12490894-12490913 MsG0580024982.01.T01:CDS 40.0%
CATGCTTCCATTTGAAGATG+AGG - Chr5:12491631-12491650 None:intergenic 40.0%
CTTTCTTCACTACCCTCAAT+TGG - Chr5:12490896-12490915 None:intergenic 40.0%
GATGAGTTGCAGCTTGATAA+TGG + Chr5:12491461-12491480 MsG0580024982.01.T01:CDS 40.0%
GCATCAGTTAAGGGGTTAAA+AGG + Chr5:12490833-12490852 MsG0580024982.01.T01:CDS 40.0%
GCATGGATTTGCAAGGAATT+TGG + Chr5:12490221-12490240 MsG0580024982.01.T01:intron 40.0%
GGAATTGCATTTGCGAGTTT+GGG + Chr5:12489266-12489285 MsG0580024982.01.T01:CDS 40.0%
GTAAGTGGTGCATCAGTTAA+GGG + Chr5:12490824-12490843 MsG0580024982.01.T01:CDS 40.0%
GTGGAATCCTCATCTTCAAA+TGG + Chr5:12491621-12491640 MsG0580024982.01.T01:CDS 40.0%
TAAGTGGTGCATCAGTTAAG+GGG + Chr5:12490825-12490844 MsG0580024982.01.T01:CDS 40.0%
TAATAGTTGGCTAGTGGTGA+GGG + Chr5:12492195-12492214 MsG0580024982.01.T01:three_prime_UTR 40.0%
TACGTATAGTCGTGCTATGT+GGG + Chr5:12490311-12490330 MsG0580024982.01.T01:CDS 40.0%
TATACACAGGCTTCTGTAAG+TGG + Chr5:12490809-12490828 MsG0580024982.01.T01:intron 40.0%
TATCCAAGGGATCCCAAATT+AGG - Chr5:12489852-12489871 None:intergenic 40.0%
TATGTGGGATTTCAGCTTTC+AGG + Chr5:12490326-12490345 MsG0580024982.01.T01:CDS 40.0%
TGACTACAACGTCAACATGA+TGG + Chr5:12491751-12491770 MsG0580024982.01.T01:intron 40.0%
TGGAATTGCATTTGCGAGTT+TGG + Chr5:12489265-12489284 MsG0580024982.01.T01:CDS 40.0%
TGTAAGTGGTGCATCAGTTA+AGG + Chr5:12490823-12490842 MsG0580024982.01.T01:CDS 40.0%
TTCAGTTCCAGAGTTACAAC+AGG - Chr5:12490285-12490304 None:intergenic 40.0%
! AGGAATTTGGATTGGACTGT+TGG + Chr5:12490234-12490253 MsG0580024982.01.T01:CDS 40.0%
! GAAAGTGTAAGCACTTGACT+TGG - Chr5:12491564-12491583 None:intergenic 40.0%
! GGGATTTGATAATTTGCGAG+AGG + Chr5:12492215-12492234 MsG0580024982.01.T01:three_prime_UTR 40.0%
! TTAACCTGTTGTATCGACCA+CGG - Chr5:12489136-12489155 None:intergenic 40.0%
! TTGGTGGTTGCATTACTTCT+TGG + Chr5:12489396-12489415 MsG0580024982.01.T01:CDS 40.0%
!! TGTTGTAACTCTGGAACTGA+AGG + Chr5:12490284-12490303 MsG0580024982.01.T01:CDS 40.0%
!! TTGCAGCTTGATAATGGCTT+GGG + Chr5:12491467-12491486 MsG0580024982.01.T01:CDS 40.0%
!!! ATTTTCTTCTGGAACAGTGG+AGG + Chr5:12489879-12489898 MsG0580024982.01.T01:intron 40.0%
ACAGTTACCTTTCAGAACCG+TGG + Chr5:12489116-12489135 MsG0580024982.01.T01:CDS 45.0%
AGCCACTAATAGTTGGCTAG+TGG + Chr5:12492189-12492208 MsG0580024982.01.T01:three_prime_UTR 45.0%
ATCCCAAATTAGGGCCTGTT+TGG - Chr5:12489842-12489861 None:intergenic 45.0%
ATCTTCGTAATGCAGGGATG+TGG + Chr5:12491394-12491413 MsG0580024982.01.T01:intron 45.0%
ATGGCTTCAATGGCATTCTG+TGG + Chr5:12489086-12489105 MsG0580024982.01.T01:CDS 45.0%
CAAACACTTGGCTAAGGCTA+AGG - Chr5:12491027-12491046 None:intergenic 45.0%
CACCACTAGCCAACTATTAG+TGG - Chr5:12492194-12492213 None:intergenic 45.0%
CACGGTTACTGATCATGCAA+TGG - Chr5:12491970-12491989 None:intergenic 45.0%
CATTGCATGATCAGTAACCG+TGG + Chr5:12491968-12491987 MsG0580024982.01.T01:exon 45.0%
CCAAACTGTGGAAAGCAATG+TGG - Chr5:12489909-12489928 None:intergenic 45.0%
CCACATTGCTTTCCACAGTT+TGG + Chr5:12489906-12489925 MsG0580024982.01.T01:CDS 45.0%
CTAATAGTTGGCTAGTGGTG+AGG + Chr5:12492194-12492213 MsG0580024982.01.T01:three_prime_UTR 45.0%
GGAGAAGTGAGAACGAGTTT+AGG - Chr5:12489347-12489366 None:intergenic 45.0%
GGGAAATCCTGTTGTAACTC+TGG + Chr5:12490275-12490294 MsG0580024982.01.T01:CDS 45.0%
GTGAAAGTTACGGAAGGTGA+AGG + Chr5:12489314-12489333 MsG0580024982.01.T01:CDS 45.0%
TTGGGAGTGAAAGTTACGGA+AGG + Chr5:12489308-12489327 MsG0580024982.01.T01:CDS 45.0%
! ACAGCTGTCCAAGTTTGTTC+AGG - Chr5:12491936-12491955 None:intergenic 45.0%
! GGTGATTCTGAGAATGTCGA+GGG + Chr5:12490255-12490274 MsG0580024982.01.T01:CDS 45.0%
! TACCCGAAAGTATGTGTGCA+GGG - Chr5:12490548-12490567 None:intergenic 45.0%
! TGGTGATTCTGAGAATGTCG+AGG + Chr5:12490254-12490273 MsG0580024982.01.T01:CDS 45.0%
! TTACCCGAAAGTATGTGTGC+AGG - Chr5:12490549-12490568 None:intergenic 45.0%
!! CTTAGCCTTAGCCAAGTGTT+TGG + Chr5:12491025-12491044 MsG0580024982.01.T01:intron 45.0%
!! GTTGCAGCTTGATAATGGCT+TGG + Chr5:12491466-12491485 MsG0580024982.01.T01:CDS 45.0%
ACTTGGCTAAGGCTAAGGGA+AGG - Chr5:12491022-12491041 None:intergenic 50.0%
AGAACAGTGCACAGTCTAGC+AGG - Chr5:12491731-12491750 None:intergenic 50.0%
AGAACCGTGGTCGATACAAC+AGG + Chr5:12489129-12489148 MsG0580024982.01.T01:CDS 50.0%
AGCTCGAGCCTGAACAAACT+TGG + Chr5:12491925-12491944 MsG0580024982.01.T01:CDS 50.0%
ATTGCACCAGGACCAAACTG+TGG - Chr5:12489921-12489940 None:intergenic 50.0%
CATACCTGCTGAATTGCACC+AGG - Chr5:12489933-12489952 None:intergenic 50.0%
CGTCGGGACGAACAAAAAGA+AGG - Chr5:12489442-12489461 None:intergenic 50.0%
CTGCCCTGCACACATACTTT+CGG + Chr5:12490542-12490561 MsG0580024982.01.T01:CDS 50.0%
GAACAGTGCACAGTCTAGCA+GGG - Chr5:12491730-12491749 None:intergenic 50.0%
TGACCAGCTACATGGGTAAG+AGG - Chr5:12491590-12491609 None:intergenic 50.0%
TGCCCTGCACACATACTTTC+GGG + Chr5:12490543-12490562 MsG0580024982.01.T01:CDS 50.0%
TGCTTTCCACAGTTTGGTCC+TGG + Chr5:12489912-12489931 MsG0580024982.01.T01:CDS 50.0%
TTGCCTCTTACCCATGTAGC+TGG + Chr5:12491584-12491603 MsG0580024982.01.T01:intron 50.0%
! AAGTTTGTTCAGGCTCGAGC+TGG - Chr5:12491926-12491945 None:intergenic 50.0%
!! GTATCGACCACGGTTCTGAA+AGG - Chr5:12489126-12489145 None:intergenic 50.0%
!! TCCTGCTTTTGGTTGTCGTG+CGG + Chr5:12492080-12492099 MsG0580024982.01.T01:three_prime_UTR 50.0%
ACCGCACGACAACCAAAAGC+AGG - Chr5:12492084-12492103 None:intergenic 55.0%
ACCGCATCTGACCAGCTACA+TGG - Chr5:12491598-12491617 None:intergenic 55.0%
ATCTCAGCCTCACTACCAGC+TGG - Chr5:12489368-12489387 None:intergenic 55.0%
CCCATGTAGCTGGTCAGATG+CGG + Chr5:12491594-12491613 MsG0580024982.01.T01:intron 55.0%
CCGCATCTGACCAGCTACAT+GGG - Chr5:12491597-12491616 None:intergenic 55.0%
CTCGTTCTCACTTCTCCAGC+TGG + Chr5:12489350-12489369 MsG0580024982.01.T01:CDS 55.0%
GTGGAAACGTGGTTCCGAAC+CGG + Chr5:12492102-12492121 MsG0580024982.01.T01:three_prime_UTR 55.0%
TGGTCCTGGTGCAATTCAGC+AGG + Chr5:12489926-12489945 MsG0580024982.01.T01:CDS 55.0%
! AGGGATGTGGTCACTTTCCC+AGG + Chr5:12491407-12491426 MsG0580024982.01.T01:intron 55.0%
! CACTTCTCCAGCTGGTAGTG+AGG + Chr5:12489358-12489377 MsG0580024982.01.T01:CDS 55.0%
! GGCCCTAATTTGGGATCCCT+TGG + Chr5:12489846-12489865 MsG0580024982.01.T01:intron 55.0%
!! TGCTTTTGGTTGTCGTGCGG+TGG + Chr5:12492083-12492102 MsG0580024982.01.T01:three_prime_UTR 55.0%
GTTGTCGTGCGGTGGAAACG+TGG + Chr5:12492091-12492110 MsG0580024982.01.T01:three_prime_UTR 60.0%
! GCTGGTCAGATGCGGTGTTG+TGG + Chr5:12491602-12491621 MsG0580024982.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 12489029 12492349 12489029 ID=MsG0580024982.01;Name=MsG0580024982.01
Chr5 mRNA 12489029 12492349 12489029 ID=MsG0580024982.01.T01;Parent=MsG0580024982.01;Name=MsG0580024982.01.T01;_AED=0.49;_eAED=0.49;_QI=51|1|1|1|1|1|9|372|312
Chr5 exon 12489029 12489150 12489029 ID=MsG0580024982.01.T01:exon:19901;Parent=MsG0580024982.01.T01
Chr5 exon 12489265 12489489 12489265 ID=MsG0580024982.01.T01:exon:19902;Parent=MsG0580024982.01.T01
Chr5 exon 12489896 12489947 12489896 ID=MsG0580024982.01.T01:exon:19903;Parent=MsG0580024982.01.T01
Chr5 exon 12490222 12490359 12490222 ID=MsG0580024982.01.T01:exon:19904;Parent=MsG0580024982.01.T01
Chr5 exon 12490466 12490564 12490466 ID=MsG0580024982.01.T01:exon:19905;Parent=MsG0580024982.01.T01
Chr5 exon 12490818 12490915 12490818 ID=MsG0580024982.01.T01:exon:19906;Parent=MsG0580024982.01.T01
Chr5 exon 12491409 12491516 12491409 ID=MsG0580024982.01.T01:exon:19907;Parent=MsG0580024982.01.T01
Chr5 exon 12491603 12491684 12491603 ID=MsG0580024982.01.T01:exon:19908;Parent=MsG0580024982.01.T01
Chr5 exon 12491912 12492349 12491912 ID=MsG0580024982.01.T01:exon:19909;Parent=MsG0580024982.01.T01
Chr5 five_prime_UTR 12489029 12489079 12489029 ID=MsG0580024982.01.T01:five_prime_utr;Parent=MsG0580024982.01.T01
Chr5 CDS 12489080 12489150 12489080 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 CDS 12489265 12489489 12489265 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 CDS 12489896 12489947 12489896 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 CDS 12490222 12490359 12490222 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 CDS 12490466 12490564 12490466 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 CDS 12490818 12490915 12490818 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 CDS 12491409 12491516 12491409 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 CDS 12491603 12491684 12491603 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 CDS 12491912 12491977 12491912 ID=MsG0580024982.01.T01:cds;Parent=MsG0580024982.01.T01
Chr5 three_prime_UTR 12491978 12492349 12491978 ID=MsG0580024982.01.T01:three_prime_utr;Parent=MsG0580024982.01.T01
Gene Sequence

>MsG0580024982.01.T01

ATGGCGATGGCTTCAATGGCATTCTGTGGTGTCAACACAGTTACCTTTCAGAACCGTGGTCGATACAACAGTGGAATTGCATTTGCGAGTTTGGGAAATAAAGAAAAAACTACTTTGGGAGTGAAAGTTACGGAAGGTGAAGGAAATTTGCCTAAACTCGTTCTCACTTCTCCAGCTGGTAGTGAGGCTGAGATATATTTGTTTGGTGGTTGCATTACTTCTTGGAAAGTTCCTAATGGCAAAGACCTTCTTTTTGTTCGTCCCGACGCCGTTTTTAATAAGAAGAAACCAATAAGTGGAGGTATCCCACATTGCTTTCCACAGTTTGGTCCTGGTGCAATTCAGCAGCATGGATTTGCAAGGAATTTGGATTGGACTGTTGGTGATTCTGAGAATGTCGAGGGAAATCCTGTTGTAACTCTGGAACTGAAGGATGATACGTATAGTCGTGCTATGTGGGATTTCAGCTTTCAGGCTTTATATAAGATCACACTAAATGCTAAAAGTCTTTCGACTGAGTTAAAAGTTAAAAATACTGACAATAAGGCATTCTCATTCAATACTGCCCTGCACACATACTTTCGGGCTTCTGTAAGTGGTGCATCAGTTAAGGGGTTAAAAGGTTGCAAAACTCTGAACAAACATCCAGATCCTAATAATCCAATTGAGGGTAGTGAAGAAAGGGATGTGGTCACTTTCCCAGGATTTGTAGATTGTGTTTATCTTAACGCTTCAGATGAGTTGCAGCTTGATAATGGCTTGGGTGATATAATTTCTATCAAGAACACGAACTGGTCAGATGCGGTGTTGTGGAATCCTCATCTTCAAATGGAAGCATGTTACAAAGATTTTGTTTGTGTTGAAAATGCTAAGATTGGAAATGTCCAGCTCGAGCCTGAACAAACTTGGACAGCTGTGCAGCATCTTACCATTGCATGA

Protein sequence

>MsG0580024982.01.T01

MAMASMAFCGVNTVTFQNRGRYNSGIAFASLGNKEKTTLGVKVTEGEGNLPKLVLTSPAGSEAEIYLFGGCITSWKVPNGKDLLFVRPDAVFNKKKPISGGIPHCFPQFGPGAIQQHGFARNLDWTVGDSENVEGNPVVTLELKDDTYSRAMWDFSFQALYKITLNAKSLSTELKVKNTDNKAFSFNTALHTYFRASVSGASVKGLKGCKTLNKHPDPNNPIEGSEERDVVTFPGFVDCVYLNASDELQLDNGLGDIISIKNTNWSDAVLWNPHLQMEACYKDFVCVENAKIGNVQLEPEQTWTAVQHLTIA*