Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048266.01.T01 | XP_013456628.1 | 92.135 | 178 | 14 | 0 | 1 | 178 | 1 | 178 | 1.91E-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048266.01.T01 | Q9SK27 | 40.152 | 132 | 72 | 5 | 24 | 150 | 23 | 152 | 1.99E-24 | 97.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048266.01.T01 | A0A072ULK7 | 92.135 | 178 | 14 | 0 | 1 | 178 | 1 | 178 | 9.14e-120 | 345 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048265.01 | MsG0080048266.01 | 0.849993 | 2.262688e-60 | 4.367995e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0080048266.01 | MsG0080049140.01 | PPI |
| MsG0380017361.01 | MsG0080048266.01 | PPI |
| MsG0080048266.01 | MsG0080048781.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048266.01.T01 | MTR_4g077787 | 92.135 | 178 | 14 | 0 | 1 | 178 | 1 | 178 | 2.32e-123 | 345 |
| MsG0080048266.01.T01 | MTR_4g111640 | 84.615 | 182 | 26 | 2 | 1 | 181 | 1 | 181 | 1.46e-114 | 323 |
| MsG0080048266.01.T01 | MTR_4g112310 | 88.636 | 132 | 13 | 2 | 51 | 181 | 1 | 131 | 5.18e-83 | 241 |
| MsG0080048266.01.T01 | MTR_6g022170 | 59.091 | 110 | 44 | 1 | 23 | 132 | 25 | 133 | 1.26e-44 | 145 |
| MsG0080048266.01.T01 | MTR_2g101300 | 37.584 | 149 | 86 | 3 | 15 | 157 | 8 | 155 | 2.20e-33 | 117 |
| MsG0080048266.01.T01 | MTR_4g078410 | 42.636 | 129 | 68 | 2 | 29 | 155 | 22 | 146 | 2.27e-30 | 109 |
| MsG0080048266.01.T01 | MTR_3g105930 | 39.130 | 161 | 83 | 6 | 29 | 179 | 24 | 179 | 3.57e-30 | 108 |
| MsG0080048266.01.T01 | MTR_2g090580 | 37.162 | 148 | 79 | 4 | 13 | 150 | 8 | 151 | 1.99e-29 | 107 |
| MsG0080048266.01.T01 | MTR_1g014120 | 39.189 | 148 | 75 | 6 | 7 | 145 | 4 | 145 | 1.71e-28 | 105 |
| MsG0080048266.01.T01 | MTR_8g463180 | 39.286 | 140 | 71 | 5 | 12 | 145 | 5 | 136 | 4.12e-27 | 104 |
| MsG0080048266.01.T01 | MTR_2g079030 | 39.535 | 129 | 72 | 2 | 14 | 140 | 7 | 131 | 2.54e-26 | 104 |
| MsG0080048266.01.T01 | MTR_8g086360 | 34.266 | 143 | 85 | 3 | 12 | 152 | 7 | 142 | 2.36e-25 | 97.1 |
| MsG0080048266.01.T01 | MTR_8g095013 | 36.885 | 122 | 69 | 3 | 12 | 131 | 8 | 123 | 1.62e-23 | 94.7 |
| MsG0080048266.01.T01 | MTR_4g081100 | 39.423 | 104 | 59 | 2 | 31 | 132 | 31 | 132 | 5.16e-22 | 89.0 |
| MsG0080048266.01.T01 | MTR_2g090575 | 35.714 | 126 | 72 | 3 | 12 | 132 | 2 | 123 | 5.31e-22 | 91.3 |
| MsG0080048266.01.T01 | MTR_8g094990 | 36.066 | 122 | 70 | 3 | 12 | 131 | 8 | 123 | 9.77e-22 | 89.4 |
| MsG0080048266.01.T01 | MTR_4g124280 | 34.161 | 161 | 78 | 4 | 32 | 170 | 25 | 179 | 1.02e-21 | 88.6 |
| MsG0080048266.01.T01 | MTR_1g077790 | 35.652 | 115 | 71 | 2 | 29 | 141 | 26 | 139 | 1.23e-21 | 87.4 |
| MsG0080048266.01.T01 | MTR_7g090170 | 37.778 | 135 | 62 | 6 | 29 | 158 | 24 | 141 | 3.00e-21 | 85.1 |
| MsG0080048266.01.T01 | MTR_8g095020 | 40.777 | 103 | 54 | 3 | 32 | 132 | 25 | 122 | 1.34e-20 | 87.0 |
| MsG0080048266.01.T01 | MTR_2g083250 | 39.048 | 105 | 60 | 3 | 31 | 132 | 25 | 128 | 6.63e-20 | 84.3 |
| MsG0080048266.01.T01 | MTR_5g006040 | 31.944 | 144 | 90 | 3 | 14 | 153 | 8 | 147 | 1.67e-19 | 81.6 |
| MsG0080048266.01.T01 | MTR_1g090420 | 29.714 | 175 | 99 | 4 | 16 | 169 | 8 | 179 | 2.55e-18 | 79.3 |
| MsG0080048266.01.T01 | MTR_3g099570 | 31.507 | 146 | 90 | 4 | 7 | 150 | 2 | 139 | 1.80e-17 | 76.3 |
| MsG0080048266.01.T01 | MTR_4g114870 | 36.275 | 102 | 61 | 2 | 32 | 131 | 191 | 290 | 2.67e-17 | 78.6 |
| MsG0080048266.01.T01 | MTR_4g114870 | 30.714 | 140 | 88 | 4 | 13 | 145 | 7 | 144 | 4.85e-16 | 75.1 |
| MsG0080048266.01.T01 | MTR_1g104800 | 34.906 | 106 | 63 | 2 | 32 | 135 | 25 | 126 | 1.11e-16 | 74.3 |
| MsG0080048266.01.T01 | MTR_4g130780 | 32.374 | 139 | 84 | 5 | 8 | 140 | 4 | 138 | 3.56e-15 | 70.1 |
| MsG0080048266.01.T01 | MTR_3g099580 | 34.783 | 115 | 62 | 3 | 24 | 131 | 12 | 120 | 4.08e-15 | 70.1 |
| MsG0080048266.01.T01 | MTR_3g092170 | 32.540 | 126 | 70 | 4 | 12 | 129 | 2 | 120 | 4.64e-15 | 71.6 |
| MsG0080048266.01.T01 | MTR_4g067200 | 29.688 | 128 | 84 | 3 | 13 | 136 | 9 | 134 | 5.00e-15 | 69.7 |
| MsG0080048266.01.T01 | MTR_4g066110 | 29.688 | 128 | 84 | 3 | 13 | 136 | 9 | 134 | 5.00e-15 | 69.7 |
| MsG0080048266.01.T01 | MTR_6g023760 | 37.500 | 104 | 57 | 3 | 30 | 131 | 24 | 121 | 5.55e-15 | 69.7 |
| MsG0080048266.01.T01 | MTR_0334s0010 | 30.833 | 120 | 79 | 2 | 13 | 131 | 9 | 125 | 6.12e-15 | 70.1 |
| MsG0080048266.01.T01 | MTR_6g083240 | 30.519 | 154 | 95 | 5 | 14 | 157 | 8 | 159 | 1.14e-14 | 68.6 |
| MsG0080048266.01.T01 | MTR_2g088990 | 33.028 | 109 | 65 | 3 | 29 | 135 | 22 | 124 | 2.99e-14 | 68.6 |
| MsG0080048266.01.T01 | MTR_3g099540 | 29.688 | 128 | 70 | 4 | 11 | 131 | 7 | 121 | 1.10e-13 | 65.1 |
| MsG0080048266.01.T01 | MTR_3g099980 | 33.333 | 126 | 74 | 4 | 11 | 133 | 6 | 124 | 2.17e-13 | 66.2 |
| MsG0080048266.01.T01 | MTR_3g099680 | 33.333 | 126 | 74 | 4 | 11 | 133 | 6 | 124 | 2.21e-13 | 66.2 |
| MsG0080048266.01.T01 | MTR_6g013420 | 30.137 | 146 | 88 | 5 | 7 | 145 | 10 | 148 | 2.35e-13 | 65.1 |
| MsG0080048266.01.T01 | MTR_8g099220 | 28.000 | 125 | 84 | 3 | 10 | 131 | 6 | 127 | 6.36e-13 | 62.8 |
| MsG0080048266.01.T01 | MTR_8g007020 | 29.730 | 148 | 80 | 6 | 29 | 158 | 21 | 162 | 7.46e-12 | 61.2 |
| MsG0080048266.01.T01 | MTR_7g086100 | 32.031 | 128 | 78 | 3 | 7 | 132 | 2 | 122 | 1.77e-11 | 61.2 |
| MsG0080048266.01.T01 | MTR_2g025580 | 26.846 | 149 | 96 | 5 | 34 | 175 | 29 | 171 | 3.08e-11 | 59.3 |
| MsG0080048266.01.T01 | MTR_1g090190 | 28.906 | 128 | 80 | 3 | 25 | 147 | 16 | 137 | 3.26e-11 | 59.7 |
| MsG0080048266.01.T01 | MTR_4g130800 | 37.209 | 86 | 51 | 2 | 54 | 137 | 50 | 134 | 3.54e-11 | 60.5 |
| MsG0080048266.01.T01 | MTR_4g130800 | 37.209 | 86 | 51 | 2 | 54 | 137 | 49 | 133 | 4.29e-11 | 60.5 |
| MsG0080048266.01.T01 | MTR_8g007035 | 33.981 | 103 | 61 | 2 | 30 | 131 | 22 | 118 | 5.25e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048266.01.T01 | AT1G48940 | 47.093 | 172 | 77 | 3 | 11 | 173 | 10 | 176 | 3.12e-56 | 175 |
| MsG0080048266.01.T01 | AT3G18590 | 58.400 | 125 | 52 | 0 | 8 | 132 | 3 | 127 | 7.25e-54 | 169 |
| MsG0080048266.01.T01 | AT5G14345 | 44.262 | 122 | 66 | 2 | 25 | 145 | 9 | 129 | 7.41e-34 | 117 |
| MsG0080048266.01.T01 | AT1G79800 | 40.800 | 125 | 73 | 1 | 11 | 135 | 13 | 136 | 3.97e-32 | 114 |
| MsG0080048266.01.T01 | AT4G28365 | 35.948 | 153 | 92 | 2 | 12 | 162 | 9 | 157 | 2.02e-30 | 110 |
| MsG0080048266.01.T01 | AT4G31840 | 37.736 | 159 | 92 | 5 | 7 | 160 | 2 | 158 | 6.46e-29 | 105 |
| MsG0080048266.01.T01 | AT4G32490 | 44.860 | 107 | 53 | 2 | 28 | 132 | 27 | 129 | 4.99e-27 | 102 |
| MsG0080048266.01.T01 | AT4G30590 | 41.129 | 124 | 68 | 3 | 12 | 132 | 8 | 129 | 1.61e-26 | 100 |
| MsG0080048266.01.T01 | AT5G53870 | 35.227 | 176 | 96 | 6 | 1 | 167 | 1 | 167 | 2.46e-26 | 103 |
| MsG0080048266.01.T01 | AT5G53870 | 35.227 | 176 | 96 | 6 | 1 | 167 | 1 | 167 | 2.86e-26 | 103 |
| MsG0080048266.01.T01 | AT5G57920 | 39.552 | 134 | 70 | 5 | 18 | 142 | 6 | 137 | 1.86e-25 | 97.1 |
| MsG0080048266.01.T01 | AT2G25060 | 40.152 | 132 | 72 | 5 | 24 | 150 | 23 | 152 | 2.03e-25 | 97.1 |
| MsG0080048266.01.T01 | AT5G57920 | 41.176 | 119 | 61 | 4 | 31 | 142 | 22 | 138 | 8.34e-25 | 95.5 |
| MsG0080048266.01.T01 | AT5G57920 | 41.176 | 119 | 61 | 4 | 31 | 142 | 54 | 170 | 1.09e-24 | 95.9 |
| MsG0080048266.01.T01 | AT4G27520 | 32.298 | 161 | 97 | 4 | 5 | 162 | 4 | 155 | 2.56e-22 | 92.4 |
| MsG0080048266.01.T01 | AT3G20570 | 33.333 | 138 | 75 | 4 | 13 | 148 | 15 | 137 | 2.18e-21 | 87.0 |
| MsG0080048266.01.T01 | AT5G25090 | 39.837 | 123 | 62 | 6 | 16 | 132 | 11 | 127 | 7.88e-21 | 85.1 |
| MsG0080048266.01.T01 | AT2G31050 | 36.029 | 136 | 74 | 4 | 11 | 142 | 12 | 138 | 1.09e-20 | 85.1 |
| MsG0080048266.01.T01 | AT2G23990 | 36.296 | 135 | 75 | 5 | 1 | 131 | 1 | 128 | 5.51e-20 | 83.6 |
| MsG0080048266.01.T01 | AT1G64640 | 33.333 | 108 | 65 | 3 | 27 | 131 | 28 | 131 | 1.91e-19 | 81.6 |
| MsG0080048266.01.T01 | AT2G32300 | 30.405 | 148 | 92 | 4 | 8 | 150 | 2 | 143 | 2.62e-19 | 82.8 |
| MsG0080048266.01.T01 | AT2G32300 | 30.405 | 148 | 92 | 4 | 8 | 150 | 32 | 173 | 4.88e-19 | 82.4 |
| MsG0080048266.01.T01 | AT2G26720 | 34.559 | 136 | 76 | 4 | 11 | 142 | 12 | 138 | 8.17e-19 | 80.5 |
| MsG0080048266.01.T01 | AT5G26330 | 35.922 | 103 | 60 | 2 | 32 | 132 | 24 | 122 | 6.44e-16 | 72.4 |
| MsG0080048266.01.T01 | AT2G23990 | 32.468 | 154 | 74 | 6 | 1 | 131 | 1 | 147 | 8.15e-16 | 72.8 |
| MsG0080048266.01.T01 | AT3G60270 | 33.333 | 102 | 61 | 2 | 32 | 132 | 26 | 121 | 1.83e-15 | 71.2 |
| MsG0080048266.01.T01 | AT5G07475 | 30.667 | 150 | 92 | 5 | 14 | 158 | 13 | 155 | 2.15e-14 | 68.6 |
| MsG0080048266.01.T01 | AT1G45063 | 32.456 | 114 | 66 | 3 | 25 | 132 | 19 | 127 | 2.59e-12 | 63.9 |
| MsG0080048266.01.T01 | AT1G45063 | 33.981 | 103 | 61 | 3 | 32 | 131 | 149 | 247 | 3.01e-12 | 63.5 |
| MsG0080048266.01.T01 | AT1G72230 | 30.693 | 101 | 69 | 1 | 52 | 151 | 37 | 137 | 3.15e-12 | 62.4 |
| MsG0080048266.01.T01 | AT1G45063 | 32.143 | 112 | 68 | 2 | 24 | 132 | 21 | 127 | 4.60e-12 | 63.9 |
| MsG0080048266.01.T01 | AT1G45063 | 33.981 | 103 | 61 | 3 | 32 | 131 | 149 | 247 | 5.86e-12 | 63.5 |
| MsG0080048266.01.T01 | AT3G27200 | 33.663 | 101 | 59 | 3 | 34 | 132 | 28 | 122 | 2.36e-11 | 59.7 |
| MsG0080048266.01.T01 | AT3G17675 | 30.645 | 124 | 77 | 3 | 11 | 131 | 10 | 127 | 2.60e-11 | 58.9 |
Find 27 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATGATCATCAAGGTTT+TGG | 0.254697 | contig259end:-2578 | MsG0080048265.01.T01:CDS |
| TCACAAAATAGATTCAAAAT+TGG | 0.280437 | contig259end:-3141 | MsG0080048266.01.T01:CDS |
| TGTGGTGCTGGTGCTGTAAT+TGG | 0.293215 | contig259end:+2547 | None:intergenic |
| CTCTTTACTTTGTCATTCCT+TGG | 0.308362 | contig259end:-2445 | MsG0080048265.01.T01:CDS |
| TACTTCATCAGTGGAGTTAG+TGG | 0.390509 | contig259end:-2619 | MsG0080048265.01.T01:CDS |
| GTGCATGATGTGATAGTAAT+AGG | 0.401733 | contig259end:+2469 | None:intergenic |
| TCATCTTTGTCCTTTGAGTC+AGG | 0.404812 | contig259end:+3183 | None:intergenic |
| TCATTTGCAGATTGTGGTGC+TGG | 0.425648 | contig259end:+2535 | None:intergenic |
| TTTGAAGTTGGTGGTAGAAT+TGG | 0.429149 | contig259end:-3216 | MsG0080048266.01.T01:CDS |
| CTGATGAAGTAGAACATTCC+TGG | 0.429651 | contig259end:+2631 | None:intergenic |
| GCATTAGAATGTTGTGCTAT+TGG | 0.440808 | contig259end:+2505 | None:intergenic |
| AGTTGGTGGTAGAATTGGTT+GGG | 0.458216 | contig259end:-3211 | MsG0080048266.01.T01:CDS |
| GCATTCTCATTTGCAGATTG+TGG | 0.492826 | contig259end:+2529 | None:intergenic |
| AACTGTACTGAATTTGAAGT+TGG | 0.536560 | contig259end:-3228 | MsG0080048266.01.T01:CDS |
| TTGGGTTGTGCCTGACTCAA+AGG | 0.571720 | contig259end:-3193 | MsG0080048266.01.T01:CDS |
| AAGTTGGTGGTAGAATTGGT+TGG | 0.575738 | contig259end:-3212 | MsG0080048266.01.T01:CDS |
| AGGCCAGAAAATGATCATCA+AGG | 0.582370 | contig259end:-2584 | MsG0080048265.01.T01:CDS |
| GTGTGAGGCAGCTTTGAAGA+TGG | 0.582821 | contig259end:+3302 | None:intergenic |
| TGTACTGAATTTGAAGTTGG+TGG | 0.583292 | contig259end:-3225 | MsG0080048266.01.T01:CDS |
| AAGATGATATGTACAACCGA+TGG | 0.592618 | contig259end:-3167 | MsG0080048266.01.T01:CDS |
| GTTAGTGGTCATTGTACAAG+AGG | 0.592736 | contig259end:-2604 | MsG0080048265.01.T01:CDS |
| TTCAAGCATAAATCATGCCA+AGG | 0.596027 | contig259end:+2428 | None:intergenic |
| GCAAAGTAAAAGTGAGTGTG+AGG | 0.606729 | contig259end:+3287 | None:intergenic |
| AGATGATATGTACAACCGAT+GGG | 0.614363 | contig259end:-3166 | MsG0080048266.01.T01:CDS |
| TGAGAAAGATTCAGTGATGG+TGG | 0.639612 | contig259end:-2740 | MsG0080048266.01.T01:CDS |
| GGAATGTTCTACTTCATCAG+TGG | 0.644882 | contig259end:-2628 | MsG0080048265.01.T01:CDS |
| GTATGAGAAAGATTCAGTGA+TGG | 0.665783 | contig259end:-2743 | MsG0080048266.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTCATTTATAAAATAAA+TGG | + | contig259end:2852-2871 | None:intergenic | 10.0% |
| !!! | ATTTATTTTATAAATGAAGA+TGG | - | contig259end:2851-2870 | MsG0080048266.01.T01:intron | 10.0% |
| !! | AAAATTAAATTGGTAAGAAA+TGG | + | contig259end:2641-2660 | None:intergenic | 15.0% |
| !! | TATATATGGCAAAATTAAAT+TGG | + | contig259end:2651-2670 | None:intergenic | 15.0% |
| !! | ACATATTACTCCTAAAAAAA+TGG | + | contig259end:2775-2794 | None:intergenic | 20.0% |
| !! | TCACAAAATAGATTCAAAAT+TGG | - | contig259end:2597-2616 | MsG0080048265.01.T01:CDS | 20.0% |
| !!! | ATATATGTCACCATTTTTTT+AGG | - | contig259end:2762-2781 | MsG0080048266.01.T01:intron | 20.0% |
| !!! | ATATCCATTACTAAAGTTTT+GGG | + | contig259end:2815-2834 | None:intergenic | 20.0% |
| !!! | TATATCCATTACTAAAGTTT+TGG | + | contig259end:2816-2835 | None:intergenic | 20.0% |
| ! | AATTCAGAACCTTTATATGT+CGG | + | contig259end:2940-2959 | None:intergenic | 25.0% |
| ! | ATATCCCAAAACTTTAGTAA+TGG | - | contig259end:2808-2827 | MsG0080048266.01.T01:intron | 25.0% |
| ! | TGACATACATAGCATATATA+TGG | + | contig259end:2665-2684 | None:intergenic | 25.0% |
| ATATGTCGGATTCTACATAT+TGG | + | contig259end:2926-2945 | None:intergenic | 30.0% | |
| ATGTAGAATCCGACATATAA+AGG | - | contig259end:2928-2947 | MsG0080048266.01.T01:intron | 30.0% | |
| CCATTGTTGCCAAAAAATAA+TGG | + | contig259end:3062-3081 | None:intergenic | 30.0% | |
| TTGGTAAGAAATGGTACTTA+CGG | + | contig259end:2632-2651 | None:intergenic | 30.0% | |
| ! | AACTGTACTGAATTTGAAGT+TGG | - | contig259end:2510-2529 | MsG0080048265.01.T01:CDS | 30.0% |
| ! | GAAAATGATCATCAAGGTTT+TGG | - | contig259end:3160-3179 | MsG0080048266.01.T01:CDS | 30.0% |
| ! | GATGTCTATTCTTAAGTTGT+TGG | - | contig259end:2725-2744 | MsG0080048266.01.T01:CDS | 30.0% |
| !! | AAACCTTGATGATCATTTTC+TGG | + | contig259end:3160-3179 | None:intergenic | 30.0% |
| !! | ACAGTTGATGACCAAAAATT+GGG | + | contig259end:2496-2515 | None:intergenic | 30.0% |
| !! | TACAGTTGATGACCAAAAAT+TGG | + | contig259end:2497-2516 | None:intergenic | 30.0% |
| !!! | CCATTATTTTTTGGCAACAA+TGG | - | contig259end:3059-3078 | MsG0080048266.01.T01:intron | 30.0% |
| AAGATGATATGTACAACCGA+TGG | - | contig259end:2571-2590 | MsG0080048265.01.T01:CDS | 35.0% | |
| AGATGATATGTACAACCGAT+GGG | - | contig259end:2572-2591 | MsG0080048265.01.T01:CDS | 35.0% | |
| CTCTTTACTTTGTCATTCCT+TGG | - | contig259end:3293-3312 | MsG0080048266.01.T01:CDS | 35.0% | |
| GCATTAGAATGTTGTGCTAT+TGG | + | contig259end:3236-3255 | None:intergenic | 35.0% | |
| GTATGAGAAAGATTCAGTGA+TGG | - | contig259end:2995-3014 | MsG0080048266.01.T01:intron | 35.0% | |
| GTGCATGATGTGATAGTAAT+AGG | + | contig259end:3272-3291 | None:intergenic | 35.0% | |
| TAAGAAATGGTACTTACGGA+CGG | + | contig259end:2628-2647 | None:intergenic | 35.0% | |
| ! | ATCTATTTTGTGAAGCCCAT+CGG | + | contig259end:2590-2609 | None:intergenic | 35.0% |
| ! | TGTACTGAATTTGAAGTTGG+TGG | - | contig259end:2513-2532 | MsG0080048265.01.T01:CDS | 35.0% |
| !! | TTTGAAGTTGGTGGTAGAAT+TGG | - | contig259end:2522-2541 | MsG0080048265.01.T01:CDS | 35.0% |
| !!! | TCCACTCGTCCATTATTTTT+TGG | - | contig259end:3050-3069 | MsG0080048266.01.T01:intron | 35.0% |
| AGGCCAGAAAATGATCATCA+AGG | - | contig259end:3154-3173 | MsG0080048266.01.T01:CDS | 40.0% | |
| CTGATGAAGTAGAACATTCC+TGG | + | contig259end:3110-3129 | None:intergenic | 40.0% | |
| GCAAAGTAAAAGTGAGTGTG+AGG | + | contig259end:2454-2473 | None:intergenic | 40.0% | |
| GCATTCTCATTTGCAGATTG+TGG | + | contig259end:3212-3231 | None:intergenic | 40.0% | |
| GGAATGTTCTACTTCATCAG+TGG | - | contig259end:3110-3129 | MsG0080048266.01.T01:intron | 40.0% | |
| GTTAGTGGTCATTGTACAAG+AGG | - | contig259end:3134-3153 | MsG0080048266.01.T01:CDS | 40.0% | |
| TACTTCATCAGTGGAGTTAG+TGG | - | contig259end:3119-3138 | MsG0080048266.01.T01:intron | 40.0% | |
| TCATCTTTGTCCTTTGAGTC+AGG | + | contig259end:2558-2577 | None:intergenic | 40.0% | |
| TGAGAAAGATTCAGTGATGG+TGG | - | contig259end:2998-3017 | MsG0080048266.01.T01:intron | 40.0% | |
| ! | GTTTTCAAATTTGAGCGACC+AGG | - | contig259end:3089-3108 | MsG0080048266.01.T01:intron | 40.0% |
| ! | TTTCTCAGCCTCCCAATTTT+TGG | - | contig259end:2482-2501 | MsG0080048265.01.T01:CDS | 40.0% |
| !! | AAGTTGGTGGTAGAATTGGT+TGG | - | contig259end:2526-2545 | MsG0080048265.01.T01:CDS | 40.0% |
| !! | AGTTGGTGGTAGAATTGGTT+GGG | - | contig259end:2527-2546 | MsG0080048265.01.T01:CDS | 40.0% |
| !! | GCCAAAAAATAATGGACGAG+TGG | + | contig259end:3054-3073 | None:intergenic | 40.0% |
| !! | GTTGATGACCAAAAATTGGG+AGG | + | contig259end:2493-2512 | None:intergenic | 40.0% |
| TCATTTGCAGATTGTGGTGC+TGG | + | contig259end:3206-3225 | None:intergenic | 45.0% | |
| ! | TTGGGTTGTGCCTGACTCAA+AGG | - | contig259end:2545-2564 | MsG0080048265.01.T01:CDS | 50.0% |
| !! | GTGTGAGGCAGCTTTGAAGA+TGG | + | contig259end:2439-2458 | None:intergenic | 50.0% |
| !! | TGTGGTGCTGGTGCTGTAAT+TGG | + | contig259end:3194-3213 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig259end | gene | 2429 | 3331 | 2429 | ID=MsG0080048266.01;Name=MsG0080048266.01 |
| contig259end | mRNA | 2429 | 3331 | 2429 | ID=MsG0080048266.01.T01;Parent=MsG0080048266.01;Name=MsG0080048266.01.T01;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|181 |
| contig259end | exon | 3130 | 3331 | 3130 | ID=MsG0080048266.01.T01:exon:10068;Parent=MsG0080048266.01.T01 |
| contig259end | exon | 2429 | 2772 | 2429 | ID=MsG0080048266.01.T01:exon:10067;Parent=MsG0080048266.01.T01 |
| contig259end | CDS | 3130 | 3331 | 3130 | ID=MsG0080048266.01.T01:cds;Parent=MsG0080048266.01.T01 |
| contig259end | CDS | 2429 | 2772 | 2429 | ID=MsG0080048266.01.T01:cds;Parent=MsG0080048266.01.T01 |
| Gene Sequence |
| Protein sequence |
