AlfalfaGEDB | MsG0280007578.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007578.01

KEGG: K14521
GO: GO:0005524 GO:0008080 GO:0016072 GO:0034470
PFAM: PF05127 PF08351 PF13718 PF13725

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007578.01.T01	AES64635.2	83.781	1005	60	6	1	902	1	1005	0	1672

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007578.01.T01	Q9XIK4	58.647	1035	289	14	1	903	1	1028	0	1101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007578.01.T01	G7ISQ3	83.781	1005	60	6	1	902	1	1005	0.0	1672

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280007563.01	MsG0280007578.01	0.911939	3.444196e-83	7.560381e-79

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PPI

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Gene1	Gene2	Type
MsG0180003567.01	MsG0280007578.01	PPI
MsG0180003567.01	MsG0280007578.01	PPI
MsG0180003573.01	MsG0280007578.01	PPI
MsG0180003623.01	MsG0280007578.01	PPI
MsG0180003623.01	MsG0280007578.01	PPI
MsG0180005007.01	MsG0280007578.01	PPI
MsG0280007563.01	MsG0280007578.01	PPI
MsG0280007578.01	MsG0080048279.01	PPI
MsG0280007578.01	MsG0580028957.01	PPI
MsG0280007578.01	MsG0880046177.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007578.01.T01	MTR_2g028030	83.781	1005	60	6	1	902	1	1005	0.0	1672
MsG0280007578.01.T01	MTR_8g092060	66.085	1032	218	14	1	903	1	1029	0.0	1282

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0280007578.01.T01	AT1G10490	58.647	1035	289	14	1	903	1	1028	1101
MsG0280007578.01.T01	AT1G10490	58.647	1035	289	14	1	903	1	1028	1101
MsG0280007578.01.T01	AT3G57940	60.906	949	253	10	1	836	1	944	1079
MsG0280007578.01.T01	AT3G57940	60.587	954	253	11	1	836	1	949	1073

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Find 168 sgRNAs with CRISPR-Local

Find 593 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGTTGTCACATTTA+TGG	0.211036	2:-17526064	MsG0280007578.01.T01:CDS
AAAATACAAATGAGTAAGGA+TGG	0.474098	2:+17519963	None:intergenic
AAAATTCTGGGTAGTACTTT+TGG	0.212769	2:-17527071	MsG0280007578.01.T01:CDS
AAAGACTTCACTACAGGCAG+TGG	0.593286	2:+17524938	None:intergenic
AAATACAAATGAGTAAGGAT+GGG	0.623146	2:+17519964	None:intergenic
AAATCACACTCACTACATGG+AGG	0.757919	2:+17524286	None:intergenic
AAATTACCCTCATGGCACTT+GGG	0.582738	2:+17523195	None:intergenic
AAGACAGGAAGACTAAATAT+GGG	0.562279	2:+17524909	None:intergenic
AAGGATTCAGACAAAATTCT+GGG	0.485701	2:-17527083	MsG0280007578.01.T01:CDS
AAGTGCTGTTGTTGCCTTGT+TGG	0.361862	2:-17526016	MsG0280007578.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTGTTGTCACATTTA+TGG	-	Chr2:17520683-17520702	MsG0280007578.01.T01:intron	30.0%
AAACCTATCTACTAATTTGG+TGG	-	Chr2:17519162-17519181	MsG0280007578.01.T01:CDS	30.0%
AAATTAGCAATAACACACAG+GGG	+	Chr2:17522221-17522240	None:intergenic	30.0%
AAATTTAAGCTTCCTCCAAA+AGG	+	Chr2:17525487-17525506	None:intergenic	30.0%
AACATAACAAAAGACAAAGG+AGG	+	Chr2:17521437-17521456	None:intergenic	30.0%
AACCAACAAAGACAACAAAT+AGG	+	Chr2:17527162-17527181	None:intergenic	30.0%
AACCTATCTACTAATTTGGT+GGG	-	Chr2:17519163-17519182	MsG0280007578.01.T01:CDS	30.0%
AAGACAGGAAGACTAAATAT+GGG	+	Chr2:17521841-17521860	None:intergenic	30.0%
AAGGATTCAGACAAAATTCT+GGG	-	Chr2:17519664-17519683	MsG0280007578.01.T01:intron	30.0%
AAGTGAAACCTATGTTAGTT+GGG	+	Chr2:17524115-17524134	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	17518804	17527965	17518804	ID=MsG0280007578.01;Name=MsG0280007578.01
Chr2	mRNA	17518804	17527965	17518804	ID=MsG0280007578.01.T01;Parent=MsG0280007578.01;Name=MsG0280007578.01.T01;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|1\|1\|1\|24\|0\|903
Chr2	exon	17527861	17527965	17527861	ID=MsG0280007578.01.T01:exon:10593;Parent=MsG0280007578.01.T01
Chr2	exon	17527331	17527410	17527331	ID=MsG0280007578.01.T01:exon:10592;Parent=MsG0280007578.01.T01
Chr2	exon	17527055	17527226	17527055	ID=MsG0280007578.01.T01:exon:10591;Parent=MsG0280007578.01.T01
Chr2	exon	17526825	17526947	17526825	ID=MsG0280007578.01.T01:exon:10590;Parent=MsG0280007578.01.T01
Chr2	exon	17526506	17526679	17526506	ID=MsG0280007578.01.T01:exon:10589;Parent=MsG0280007578.01.T01
Chr2	exon	17526182	17526292	17526182	ID=MsG0280007578.01.T01:exon:10588;Parent=MsG0280007578.01.T01
Chr2	exon	17525952	17526088	17525952	ID=MsG0280007578.01.T01:exon:10587;Parent=MsG0280007578.01.T01
Chr2	exon	17525772	17525865	17525772	ID=MsG0280007578.01.T01:exon:10586;Parent=MsG0280007578.01.T01
Chr2	exon	17525166	17525255	17525166	ID=MsG0280007578.01.T01:exon:10585;Parent=MsG0280007578.01.T01
Chr2	exon	17524896	17525032	17524896	ID=MsG0280007578.01.T01:exon:10584;Parent=MsG0280007578.01.T01
Chr2	exon	17524685	17524782	17524685	ID=MsG0280007578.01.T01:exon:10583;Parent=MsG0280007578.01.T01
Chr2	exon	17524397	17524514	17524397	ID=MsG0280007578.01.T01:exon:10582;Parent=MsG0280007578.01.T01
Chr2	exon	17524225	17524312	17524225	ID=MsG0280007578.01.T01:exon:10581;Parent=MsG0280007578.01.T01
Chr2	exon	17524033	17524132	17524033	ID=MsG0280007578.01.T01:exon:10580;Parent=MsG0280007578.01.T01
Chr2	exon	17523882	17523934	17523882	ID=MsG0280007578.01.T01:exon:10579;Parent=MsG0280007578.01.T01
Chr2	exon	17523202	17523378	17523202	ID=MsG0280007578.01.T01:exon:10578;Parent=MsG0280007578.01.T01
Chr2	exon	17523078	17523115	17523078	ID=MsG0280007578.01.T01:exon:10577;Parent=MsG0280007578.01.T01
Chr2	exon	17522112	17522202	17522112	ID=MsG0280007578.01.T01:exon:10576;Parent=MsG0280007578.01.T01
Chr2	exon	17521026	17521134	17521026	ID=MsG0280007578.01.T01:exon:10575;Parent=MsG0280007578.01.T01
Chr2	exon	17520865	17520934	17520865	ID=MsG0280007578.01.T01:exon:10574;Parent=MsG0280007578.01.T01
Chr2	exon	17520451	17520586	17520451	ID=MsG0280007578.01.T01:exon:10573;Parent=MsG0280007578.01.T01
Chr2	exon	17519873	17520001	17519873	ID=MsG0280007578.01.T01:exon:10572;Parent=MsG0280007578.01.T01
Chr2	exon	17519144	17519209	17519144	ID=MsG0280007578.01.T01:exon:10571;Parent=MsG0280007578.01.T01
Chr2	exon	17518804	17519019	17518804	ID=MsG0280007578.01.T01:exon:10570;Parent=MsG0280007578.01.T01
Chr2	CDS	17527861	17527965	17527861	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17527331	17527410	17527331	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17527055	17527226	17527055	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17526825	17526947	17526825	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17526506	17526679	17526506	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17526182	17526292	17526182	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17525952	17526088	17525952	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17525772	17525865	17525772	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17525166	17525255	17525166	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17524896	17525032	17524896	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17524685	17524782	17524685	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17524397	17524514	17524397	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17524225	17524312	17524225	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17524033	17524132	17524033	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17523882	17523934	17523882	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17523202	17523378	17523202	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17523078	17523115	17523078	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17522112	17522202	17522112	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17521026	17521134	17521026	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17520865	17520934	17520865	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17520451	17520586	17520451	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17519873	17520001	17519873	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17519144	17519209	17519144	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01
Chr2	CDS	17518804	17519019	17518804	ID=MsG0280007578.01.T01:cds;Parent=MsG0280007578.01.T01

Gene Sequence

>MsG0280007578.01.T01

ATGAGGAAGAAGGTGGATGAGCGAATCAGAACTCTCATTGAGAATGGTGTTAAAACAAGGCACAGGTCCATGTTTGTCATCATTGGTGACAAGTACTATGACCAGATTGTAAATCTTCATTACATGCTTAGCCAGGCACAGATCAAATCCAGTCCTACTGTTTTATGGTGTTACAAGGACAAGCGTCATATGAAAGAACATGAGAAGCAGATAGAAAAATTGAGGAAGAGGGGTTTATTGGATTCCGATAGAGCTGATCCATTTGTGATGTTTATGAAAAGTAAGCAAATAACTCGTTGTTTGTATAAGGATTCAGACAAAATTCTGGGTAGTACTTTTGGAATGTGTATACTCCAGGATTTTGAGGCGTTAACGCCTAATCTCCTAGCACGAACAATAGAGACGGTTGAGGGAGGAGGTCTGGTTGTTTTGCTTATTCGTACTCTATCATCGCTTACATGTTTGTACACAATGGTGATGGATGTCCATGAAAGATTTCGAACTGAATCACACACGGAGGCCACTGGGCGCTTTAATGAACGCTTCTTATTATCACTCGCTTCTTGCAAGGCATGTGTGTTCATGGACGACGAGCTGAATATTTTACCTATTTCATCTCACATAAGGTCCATCACTCCGGTTTCTGTCAATGAGGACTCTGAAGGACTGTCAAAAACAGAACAGGACCTGAAGAACCTTAAAGAACAACTTGATGAAACTTTACATGTTGGACCATTGATCAGGAAGTGTTGCACAATGGATCAGGGAAAAGCTGTTGTCACATTTATGGACGCAATTTTGAACACGAAACTGCGAAGTGCTGTTGTTGCCTTGTTGGCTGCTCGTGGCCGAGGGAAATCAGCTGCTCTTGGTTTATCTATTGCTGGAGCCGTTGCTGTTGGGTATTCAAATATTTTTGTAACTGCACCAAGCCCTGAGAATTTGAAAACCTTGTTTGAATTTGTATGCAAAGGTTTATCTGCACTTGACTACAAGGAATTTGATGTGGTGAAAAGTGTGAATCCCGCGTTCCATAAAGCTACTGAAAGAATCAATATTTATAAGCACCACAGACAGACAATTCAGTATATACTGCCACACGAACATGAAAAGCTCTCGCAAGTTGAATTGTTGGTCGTTGATGAAGCTGCTGCTATTCCACTGCCTGTAGTGAAGTCTTTGCTTGGCCCATATTTAGTCTTCCTGTCTTCTACTGTTAATGGTTATGAAGGTACTGGACGCTCTTTATCATTAAAACTTTTGCATCAATTGGAAGGTCAAAACAATGATTCTGCCAAGACATCAGAGGGCACTGATTCTGGATTTAAGAAAATTGAACTGAGTGAATCCATCAGATATGCTTCTGGCGATCCCATTGAAAACTGGCTTAACACATTACTTTGCTTAGATGTTTCAAATGCCATCCCTAATCTTAGCAGGTTACCTCCATGTAGTGAGTGTGATTTATACTATGTCAATCGGGATACCCTCTTTTCTTATCACAAAGATAGTGAATTATTTTTGCAGCAAATGATGTCCTTATATGTTGCATCACATTACAAGAATTCTCCAAATGATCTACAGCTGATGTCAGATGCTCCAGCACACCACTTATTTGTACTACTTGGACCTGTTGATGAATCAAAGAATCAACTTCCTGATATTTTGTGCGTCATCCAGGTTTGTCTTGAGGGGCAGATATCTTGTCATTCGGCAATCCAGAGTTTGAGCAGTGGTCGTCAACCATTTGGCGATCAAATTCCATGGAAATTCTGTGAGCAATTCCAAGACACAAATTTTCCTTCACTTTCAGGTGCTCGCATTGTACGCATTGCTACACACCCAAGTGCCATGAGGCTTGGTTATGGCTCACAAGCAGTTGAGCTTTTAATACGTTACTATGAAGGACAACTTACTCCTATCTCTGAGATGGATATTGAACCTGAAATACAGGCTCCACCAAGAGTTACAGAAGCTGCAGAGAAGAATACTGTGACTGGTGAGCATTCATGTATGGTCTTGAAACCTCTTGACAATGATGAAATTGAAGTTGATGGATCAAATCACGGGGACTTTTTCAGACCATTTTACCAAGATTTTAGGCAAAGATTTACTAGACTTCTATCTTCCACGTTTCGTGGCATGGATTACAAGCTTGCTATAAGGATCATGGATCCAAAAATCAAGTTCACAGAGCAGGAGCAGACAAAGTCCACTTCTGATAAATTTTTGGGGTCAGTCGGGGAATATGATATGAAGCGACTAAAGGCTTATGTTGATGGTCCTTACGAGTTTCGTGTGATTTTAGATTTAGTTCCCATCCTTACTCATTTGTATTTTCAAGAAAAGCTTCCGGTTGAATTGTCAGCTTTACAAGCTTCTGTGTTACTTTGCATTGGTCTGCAAAATCAGGACATTTCGTACATTGAGACTGTCATGGAACCTCTTAGTGTATCTTTGGATGAAGACCTCAATAATGCAGCTAAACAAGTTGAGGATGATATGAAGTTAAAAGAGGAAGCAGACTTAGCTCCTGACTTTGAGTCTGTTTTACAAAATAATGGTGGAAAAATGCCATCTGATGGTGTTATTGCTGTGAAAGCCATTAGGAGTGGAGTGAAACTTCAAAAGGAAAAAAGAAGTCACAAGAATGGTACAAAGCGTGAGAAAGACAACCACAGCCATAAGTTAAGCAAAAGAAGAAGATCTTGA

Protein sequence

>MsG0280007578.01.T01

MRKKVDERIRTLIENGVKTRHRSMFVIIGDKYYDQIVNLHYMLSQAQIKSSPTVLWCYKDKRHMKEHEKQIEKLRKRGLLDSDRADPFVMFMKSKQITRCLYKDSDKILGSTFGMCILQDFEALTPNLLARTIETVEGGGLVVLLIRTLSSLTCLYTMVMDVHERFRTESHTEATGRFNERFLLSLASCKACVFMDDELNILPISSHIRSITPVSVNEDSEGLSKTEQDLKNLKEQLDETLHVGPLIRKCCTMDQGKAVVTFMDAILNTKLRSAVVALLAARGRGKSAALGLSIAGAVAVGYSNIFVTAPSPENLKTLFEFVCKGLSALDYKEFDVVKSVNPAFHKATERINIYKHHRQTIQYILPHEHEKLSQVELLVVDEAAAIPLPVVKSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEGQNNDSAKTSEGTDSGFKKIELSESIRYASGDPIENWLNTLLCLDVSNAIPNLSRLPPCSECDLYYVNRDTLFSYHKDSELFLQQMMSLYVASHYKNSPNDLQLMSDAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISCHSAIQSLSSGRQPFGDQIPWKFCEQFQDTNFPSLSGARIVRIATHPSAMRLGYGSQAVELLIRYYEGQLTPISEMDIEPEIQAPPRVTEAAEKNTVTGEHSCMVLKPLDNDEIEVDGSNHGDFFRPFYQDFRQRFTRLLSSTFRGMDYKLAIRIMDPKIKFTEQEQTKSTSDKFLGSVGEYDMKRLKAYVDGPYEFRVILDLVPILTHLYFQEKLPVELSALQASVLLCIGLQNQDISYIETVMEPLSVSLDEDLNNAAKQVEDDMKLKEEADLAPDFESVLQNNGGKMPSDGVIAVKAIRSGVKLQKEKRSHKNGTKREKDNHSHKLSKRRRS*