AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048528.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048528.01.T02 MTR_4g083080 97.959 196 4 0 96 291 1 196 9.93e-140 397
MsG0080048528.01.T02 MTR_5g044540 82.967 182 31 0 110 291 34 215 5.89e-109 320
MsG0080048528.01.T02 MTR_5g044540 89.474 152 16 0 140 291 2 153 1.27e-97 289
MsG0080048528.01.T02 MTR_5g044540 89.583 144 15 0 148 291 9 152 2.18e-92 276
MsG0080048528.01.T02 MTR_5g044540 90.441 136 13 0 156 291 1 136 9.21e-88 263
MsG0080048528.01.T02 MTR_5g063210 72.581 62 17 0 16 77 6 67 3.53e-23 94.7
MsG0080048528.01.T02 MTR_6g023795 69.643 56 17 0 1 56 7 62 4.85e-20 84.0
MsG0080048528.01.T02 MTR_8g077185 38.793 116 68 3 163 278 94 206 8.56e-16 77.4
MsG0080048528.01.T01 MTR_4g083080 97.885 331 7 0 1 331 1 331 0.0 668
MsG0080048528.01.T01 MTR_5g044540 78.302 318 69 0 14 331 33 350 0.0 535
MsG0080048528.01.T01 MTR_5g044540 81.533 287 53 0 45 331 2 288 0.0 503
MsG0080048528.01.T01 MTR_5g044540 81.362 279 52 0 53 331 9 287 2.98e-176 490
MsG0080048528.01.T01 MTR_5g044540 81.550 271 50 0 61 331 1 271 1.05e-171 478
MsG0080048528.01.T01 MTR_8g077185 27.037 270 160 9 68 309 94 354 1.21e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048528.01.T02 AT1G13820 71.569 204 52 1 94 291 2 205 1.27e-102 303
MsG0080048528.01.T02 AT5G39220 62.371 194 70 2 103 293 13 206 2.58e-86 262
MsG0080048528.01.T02 AT5G39220 59.278 194 68 3 103 293 13 198 1.90e-78 241
MsG0080048528.01.T02 AT4G36530 36.111 108 67 2 163 270 94 199 4.59e-15 75.1
MsG0080048528.01.T02 AT4G36530 36.111 108 67 2 163 270 37 142 5.04e-15 74.7
MsG0080048528.01.T01 AT1G13820 72.669 311 81 1 12 322 25 331 2.87e-172 482
MsG0080048528.01.T01 AT5G39220 62.500 312 114 2 8 316 13 324 4.83e-150 425
MsG0080048528.01.T01 AT5G39220 60.577 312 112 3 8 316 13 316 5.56e-142 404
MsG0080048528.01.T01 AT4G36530 25.000 284 164 9 68 317 37 305 2.35e-15 76.3
MsG0080048528.01.T01 AT4G36530 25.357 280 160 9 68 313 94 358 3.33e-15 76.3

Find 89 sgRNAs with CRISPR-Local

Find 491 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAATCAATTAAAATTA+TGG 0.154025 contig347end:-15519 None:intergenic
AGCAGAAAACACTCATAATT+TGG 0.205221 contig347end:+14928 MsG0080048528.01.T01:CDS
TTCAGCAACGACCTTGAATA+TGG 0.221184 contig347end:-10267 None:intergenic
TTAGTTCCCTTCACTGAAAA+TGG 0.239430 contig347end:+10220 MsG0080048528.01.T01:exon
GGTGACCACAATCGGGTATT+TGG 0.260697 contig347end:-15136 None:intergenic
TGAATGTCCATTCAAGTATA+TGG 0.269679 contig347end:-15493 None:intergenic
CTAGACAGAATGCAAGTTTA+AGG 0.280963 contig347end:+7968 MsG0080048528.01.T02:CDS
GCAGAAAACACTCATAATTT+GGG 0.293612 contig347end:+14929 MsG0080048528.01.T01:CDS
CTTCTAGCTATCCCTATTGA+TGG 0.319434 contig347end:+8021 MsG0080048528.01.T02:CDS
GTTCATTATAAGGAGTTTCT+TGG 0.321036 contig347end:+8177 MsG0080048528.01.T02:CDS
TTGATTCTGTTGACGTCTTT+AGG 0.328912 contig347end:-10320 None:intergenic
CCTAGAGCGGCAGCTTATGC+TGG 0.339470 contig347end:+12507 MsG0080048528.01.T01:CDS
AGAGCATGCAGTTCATTATA+AGG 0.342722 contig347end:+8167 MsG0080048528.01.T02:CDS
GTACACACATGACTTTGTTA+TGG 0.350464 contig347end:+8206 MsG0080048528.01.T02:CDS
CTTTCAGTACTAGCCTTGAT+TGG 0.357194 contig347end:+14255 MsG0080048528.01.T01:CDS
AAGGTTTAACTTACGGAAAC+GGG 0.393487 contig347end:-10386 None:intergenic
TGTGCCATTGCCCATATTCA+AGG 0.398371 contig347end:+10256 MsG0080048528.01.T01:CDS
TGCTGACCTAACCCATCAAT+AGG 0.400842 contig347end:-8033 None:intergenic
TTTACTGTCTTTGTATCCTT+CGG 0.403960 contig347end:-15212 None:intergenic
TATAAATCCATATACTTGAA+TGG 0.409935 contig347end:+15486 MsG0080048528.01.T01:three_prime_UTR
TTCTGTTGTGAAACTCATAA+AGG 0.412198 contig347end:+15181 MsG0080048528.01.T01:CDS
ATGAGGAAGGTGACCACAAT+CGG 0.412670 contig347end:-15144 None:intergenic
ATGAGTTTCACAACAGAATC+CGG 0.424950 contig347end:-15176 None:intergenic
CAGAGAAATGACAGAATGTT+TGG 0.437973 contig347end:+15284 MsG0080048528.01.T01:three_prime_UTR
TTCTCTGTCAGAATGGCAAA+AGG 0.444450 contig347end:-15268 None:intergenic
AAAGGTTTAACTTACGGAAA+CGG 0.449434 contig347end:-10387 None:intergenic
TATCAATTCAGTGGGGCTGC+TGG 0.457316 contig347end:+15352 MsG0080048528.01.T01:three_prime_UTR
ATTTGGCGTATAATTGCATC+AGG 0.462626 contig347end:-15119 None:intergenic
TTCTAGCTATCCCTATTGAT+GGG 0.464053 contig347end:+8022 MsG0080048528.01.T02:CDS
AACTTACATTTGTCCAATCA+AGG 0.464884 contig347end:-14268 None:intergenic
GCTATCCCTATTGATGGGTT+AGG 0.467562 contig347end:+8027 MsG0080048528.01.T02:CDS
GCTTGCATTGTTTATTGCCA+TGG 0.468319 contig347end:+14675 MsG0080048528.01.T01:CDS
CTGTCATTTCTCTGTCAGAA+TGG 0.470108 contig347end:-15275 None:intergenic
CTAGAGCGGCAGCTTATGCT+GGG 0.475042 contig347end:+12508 MsG0080048528.01.T01:CDS
ATGCACGCCTTACGATAAAC+AGG 0.477824 contig347end:-8132 None:intergenic
CCGCTCTAGGTAAAGTTGCT+AGG 0.483024 contig347end:-12494 None:intergenic
TTCAGTGAAGGGAACTAAGC+TGG 0.484861 contig347end:-10215 None:intergenic
TTGAATGGTTATCAATTCAG+TGG 0.491660 contig347end:+15343 MsG0080048528.01.T01:three_prime_UTR
GTTGACGTCTTTAGGAAGAA+AGG 0.491857 contig347end:-10312 None:intergenic
TCAGCAACGACCTTGAATAT+GGG 0.493870 contig347end:-10266 None:intergenic
GCTGACCTAACCCATCAATA+GGG 0.495877 contig347end:-8032 None:intergenic
AGTTTGCATATACACGTAAC+GGG 0.504413 contig347end:-14211 None:intergenic
CCTTCCTCATGTTGAAAGAC+CGG 0.504688 contig347end:+15157 MsG0080048528.01.T01:CDS
CCAGCATAAGCTGCCGCTCT+AGG 0.515122 contig347end:-12507 None:intergenic
CTAGTGGAATCATTGAGTTA+TGG 0.517618 contig347end:+15378 MsG0080048528.01.T01:three_prime_UTR
GCTAGTACTGAAAGATATGT+TGG 0.518274 contig347end:-14246 None:intergenic
GCATTGTTTATTGCCATGGT+GGG 0.519692 contig347end:+14679 MsG0080048528.01.T01:CDS
GTGGGGCTGCTGGTCACTAG+TGG 0.520636 contig347end:+15362 MsG0080048528.01.T01:three_prime_UTR
AGTAGTGATGGAGCATTGAA+TGG 0.532891 contig347end:+15328 MsG0080048528.01.T01:three_prime_UTR
CATAAAGGAATTTGTTCCGA+AGG 0.534304 contig347end:+15196 MsG0080048528.01.T01:CDS
TGAATGGTTATCAATTCAGT+GGG 0.542993 contig347end:+15344 MsG0080048528.01.T01:three_prime_UTR
ATTCAATGCTCCATCACTAC+TGG 0.545151 contig347end:-15326 None:intergenic
TCGCTCGAACTCTCGCTACA+CGG 0.547927 contig347end:+10351 MsG0080048528.01.T01:CDS
AGCATATTACGATACTCTAC+TGG 0.549400 contig347end:-8063 None:intergenic
GATGCTAGTGTATATACAGA+AGG 0.551943 contig347end:+12462 MsG0080048528.01.T01:CDS
ACGTCTTTAGGAAGAAAGGA+AGG 0.559625 contig347end:-10308 None:intergenic
TGTTTATCGTAAGGCGTGCA+TGG 0.560289 contig347end:+8134 MsG0080048528.01.T02:CDS
AGTGTATATACAGAAGGGAC+AGG 0.561208 contig347end:+12468 MsG0080048528.01.T01:CDS
GTAGCGAGAGTTCGAGCGAA+AGG 0.562295 contig347end:-10347 None:intergenic
TTGTTTATTGCCATGGTGGG+AGG 0.562994 contig347end:+14682 MsG0080048528.01.T01:CDS
TAGTTTGCATATACACGTAA+CGG 0.563754 contig347end:-14212 None:intergenic
GGTGTGTCCTGTTTATCGTA+AGG 0.569373 contig347end:+8125 MsG0080048528.01.T02:CDS
TAGCGAGAGTTCGAGCGAAA+GGG 0.570769 contig347end:-10346 None:intergenic
TGAGGAAGGTGACCACAATC+GGG 0.572360 contig347end:-15143 None:intergenic
TCTCTGTCAGAATGGCAAAA+GGG 0.576525 contig347end:-15267 None:intergenic
GATTGAGTGGCAGTTATCTG+AGG 0.590898 contig347end:+9971 MsG0080048528.01.T01:five_prime_UTR
TAAACTTGCATTCTGTCTAG+TGG 0.591888 contig347end:-7965 None:intergenic
CGTCTTTAGGAAGAAAGGAA+GGG 0.596147 contig347end:-10307 None:intergenic
TGCATTGTTTATTGCCATGG+TGG 0.602778 contig347end:+14678 MsG0080048528.01.T01:CDS
ACCGCAGCATCCTCCCACCA+TGG 0.611191 contig347end:-14692 None:intergenic
CAGAAAACACTCATAATTTG+GGG 0.615099 contig347end:+14930 MsG0080048528.01.T01:CDS
ACTGAAAGATATGTTGGTGA+AGG 0.615555 contig347end:-14240 None:intergenic
CCTAGCAACTTTACCTAGAG+CGG 0.619639 contig347end:+12494 MsG0080048528.01.T01:CDS
CCGGTCTTTCAACATGAGGA+AGG 0.621810 contig347end:-15157 None:intergenic
ATTGAGTGGCAGTTATCTGA+GGG 0.630838 contig347end:+9972 MsG0080048528.01.T01:five_prime_UTR
CAAGCTTATTGCTGATTATG+CGG 0.631427 contig347end:-14962 None:intergenic
GAATCCGGTCTTTCAACATG+AGG 0.633980 contig347end:-15161 None:intergenic
AAGAAAATCATGAACATGTG+CGG 0.640834 contig347end:-8001 None:intergenic
ATGCTAGTGTATATACAGAA+GGG 0.645627 contig347end:+12463 MsG0080048528.01.T01:CDS
ATACGCCAAATACCCGATTG+TGG 0.650226 contig347end:+15131 MsG0080048528.01.T01:CDS
ACGACCTTGAATATGGGCAA+TGG 0.651406 contig347end:-10260 None:intergenic
AAGTGATGATGAAGATTGAG+TGG 0.658807 contig347end:+9958 MsG0080048528.01.T02:intron
GCCATGGTGGGAGGATGCTG+CGG 0.662564 contig347end:+14691 MsG0080048528.01.T01:CDS
AATCAGCAATAAGCTTGCAG+TGG 0.671390 contig347end:+14968 MsG0080048528.01.T01:CDS
ATGGCAATAAACAATGCAAG+CGG 0.672060 contig347end:-14673 None:intergenic
GAAAACACTCATAATTTGGG+GGG 0.683422 contig347end:+14932 MsG0080048528.01.T01:CDS
AGAAAACACTCATAATTTGG+GGG 0.722458 contig347end:+14931 MsG0080048528.01.T01:CDS
TAGAGCGGCAGCTTATGCTG+GGG 0.733422 contig347end:+12509 MsG0080048528.01.T01:CDS
GAATGGTTATCAATTCAGTG+GGG 0.775020 contig347end:+15345 MsG0080048528.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTATTTTTTAAA+AGG - contig347end:9907-9926 None:intergenic 0.0%
!!! TTTTATTTTTTAAAAATAAT+CGG + contig347end:9808-9827 MsG0080048528.01.T02:intron 0.0%
!! AATTTCATTGAAAAATAAAA+AGG - contig347end:9333-9352 None:intergenic 10.0%
!! ACATATATAATTATATTCAA+AGG + contig347end:10596-10615 MsG0080048528.01.T01:intron 10.0%
!! ACTAATTATGTAATAAATTT+AGG + contig347end:8984-9003 MsG0080048528.01.T02:intron 10.0%
!! ATATATAATCTTATATAGAT+TGG + contig347end:14650-14669 MsG0080048528.01.T01:intron 10.0%
!! CTAATTATGTAATAAATTTA+GGG + contig347end:8985-9004 MsG0080048528.01.T02:intron 10.0%
!! TAAAATTTACTTTCAATTTA+GGG + contig347end:9018-9037 MsG0080048528.01.T02:intron 10.0%
!! TTAAAATTTACTTTCAATTT+AGG + contig347end:9017-9036 MsG0080048528.01.T02:intron 10.0%
!! TTGTAATAATTGTTTATAAT+AGG + contig347end:10788-10807 MsG0080048528.01.T01:intron 10.0%
!!! AAATTAAATTTCATTTTAGT+AGG - contig347end:13227-13246 None:intergenic 10.0%
!!! AAGAAGTTTTTTATTTTTAT+AGG + contig347end:9650-9669 MsG0080048528.01.T02:intron 10.0%
!!! AATTAAATTTCATTTTAGTA+GGG - contig347end:13226-13245 None:intergenic 10.0%
!!! ATGTAATTTTTGATATATTT+AGG + contig347end:8229-8248 MsG0080048528.01.T02:intron 10.0%
!!! ATTTATATACAACTTTAAAA+TGG - contig347end:12011-12030 None:intergenic 10.0%
!!! TTGATATTTTTTTTTTAAAC+GGG - contig347end:11415-11434 None:intergenic 10.0%
!! ATCCTCTAAATTAAAAAAAT+TGG - contig347end:14301-14320 None:intergenic 15.0%
!! ATTAAATTATCGATAAGAAA+AGG - contig347end:10408-10427 None:intergenic 15.0%
!! ATTAATTACATATGAATAGA+AGG - contig347end:8692-8711 None:intergenic 15.0%
!! ATTGTTTATAATAGGATTAT+AGG + contig347end:10796-10815 MsG0080048528.01.T01:intron 15.0%
!! TAAAAAAATCTTCAAAAGTT+GGG - contig347end:12370-12389 None:intergenic 15.0%
!! TGAATATAATTATATATGTG+TGG - contig347end:10595-10614 None:intergenic 15.0%
!! TTAAAAAAATCTTCAAAAGT+TGG - contig347end:12371-12390 None:intergenic 15.0%
!! TTATATCAAAATAATGATCT+TGG + contig347end:15018-15037 MsG0080048528.01.T01:intron 15.0%
!! TTGAAACATAACAAATATTA+TGG + contig347end:11136-11155 MsG0080048528.01.T01:intron 15.0%
!! TTTATTACATAATTAGTATG+AGG - contig347end:8981-9000 None:intergenic 15.0%
!!! AATTTTTGATATATTTAGGT+GGG + contig347end:8233-8252 MsG0080048528.01.T02:intron 15.0%
!!! ATAAATTCATTATGTACTTT+TGG - contig347end:13376-13395 None:intergenic 15.0%
!!! ATATTTGTTATGTTTCAAAA+TGG - contig347end:11134-11153 None:intergenic 15.0%
!!! ATCCAATTTTTTTAATTTAG+AGG + contig347end:14296-14315 MsG0080048528.01.T01:intron 15.0%
!!! ATTAAATTTCATTTTAGTAG+GGG - contig347end:13225-13244 None:intergenic 15.0%
!!! ATTTACTTTTTTTTGCTAAT+AGG + contig347end:9055-9074 MsG0080048528.01.T02:intron 15.0%
!!! TAAGAAATCAGATATTTTAT+AGG + contig347end:12090-12109 MsG0080048528.01.T01:intron 15.0%
!!! TAATTTTGTTAAGAATTCAA+GGG + contig347end:13816-13835 MsG0080048528.01.T01:intron 15.0%
!!! TAATTTTTGATATATTTAGG+TGG + contig347end:8232-8251 MsG0080048528.01.T02:intron 15.0%
!!! TACTTTCTAATTTTTATCAT+TGG + contig347end:12044-12063 MsG0080048528.01.T01:intron 15.0%
!!! TTTAACCGAAATTTTTATTA+CGG + contig347end:9717-9736 MsG0080048528.01.T02:intron 15.0%
!! AGTACATAATGAATTTATCT+TGG + contig347end:13378-13397 MsG0080048528.01.T01:intron 20.0%
!! ATATACTTACTAAAAAGATG+TGG + contig347end:14881-14900 MsG0080048528.01.T01:intron 20.0%
!! ATTATTGCAATAATGTGAAA+AGG - contig347end:14034-14053 None:intergenic 20.0%
!! GAAATACTAATGAAATGAAA+AGG - contig347end:10848-10867 None:intergenic 20.0%
!! GAGTTAAAAATCCAATATAT+AGG - contig347end:13059-13078 None:intergenic 20.0%
!! GCAGATTATAAAAAGAAAAA+GGG + contig347end:9929-9948 MsG0080048528.01.T02:intron 20.0%
!! TAATTATATTCAAAGGTTTG+AGG + contig347end:10603-10622 MsG0080048528.01.T01:intron 20.0%
!! TATAAATCCATATACTTGAA+TGG + contig347end:15486-15505 MsG0080048528.01.T01:three_prime_UTR 20.0%
!! TATTGCTTAATTCTTGATTA+AGG + contig347end:11264-11283 MsG0080048528.01.T01:intron 20.0%
!! TATTTGCATATAATTCAAAC+AGG + contig347end:11498-11517 MsG0080048528.01.T01:intron 20.0%
!! TGCAGATTATAAAAAGAAAA+AGG + contig347end:9928-9947 MsG0080048528.01.T02:intron 20.0%
!! TGTGAATTAATATGATATGA+AGG - contig347end:14573-14592 None:intergenic 20.0%
!! TTATAATAGGATTATAGGAT+AGG + contig347end:10801-10820 MsG0080048528.01.T01:intron 20.0%
!!! AACACATTGTTTATTGATTT+AGG + contig347end:11011-11030 MsG0080048528.01.T01:intron 20.0%
!!! AATTTTGTTAAGAATTCAAG+GGG + contig347end:13817-13836 MsG0080048528.01.T01:intron 20.0%
!!! ACACATTGTTTATTGATTTA+GGG + contig347end:11012-11031 MsG0080048528.01.T01:intron 20.0%
!!! ACTAGAATTTTTTACTTTCA+TGG + contig347end:14084-14103 MsG0080048528.01.T01:intron 20.0%
!!! ATAAGAAAAGGTTTAACTTA+CGG - contig347end:10396-10415 None:intergenic 20.0%
!!! ATTTAAAGCTTCAAAATGTT+GGG + contig347end:13549-13568 MsG0080048528.01.T01:intron 20.0%
!!! ATTTTTGTTAGAAAACACAA+TGG + contig347end:14810-14829 MsG0080048528.01.T01:intron 20.0%
!!! CTAGAATTTTTTACTTTCAT+GGG + contig347end:14085-14104 MsG0080048528.01.T01:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+AGG - contig347end:9179-9198 None:intergenic 20.0%
!!! GTAATTTTGTTAAGAATTCA+AGG + contig347end:13815-13834 MsG0080048528.01.T01:intron 20.0%
!!! TAGAATTTTTTACTTTCATG+GGG + contig347end:14086-14105 MsG0080048528.01.T01:intron 20.0%
!!! TATAAAAACATGTTGATTGT+TGG - contig347end:8496-8515 None:intergenic 20.0%
!!! TCACATTTTATCCTATATAT+TGG + contig347end:13045-13064 MsG0080048528.01.T01:intron 20.0%
!!! TCCATTAGGTTTTTTATATT+TGG - contig347end:10984-11003 None:intergenic 20.0%
!!! TTATGACAAAATAGGATTTT+TGG - contig347end:14443-14462 None:intergenic 20.0%
!!! TTTTTTCTTCCTCATATTTT+GGG + contig347end:10869-10888 MsG0080048528.01.T01:intron 20.0%
!!! TTTTTTTCTTCCTCATATTT+TGG + contig347end:10868-10887 MsG0080048528.01.T01:intron 20.0%
! AAAATCAGTAAAACATACGA+AGG + contig347end:9532-9551 MsG0080048528.01.T02:intron 25.0%
! AAATTACCCTAAATACAATG+TGG - contig347end:13802-13821 None:intergenic 25.0%
! AATCAAGAATTAAGCAATAG+TGG - contig347end:11263-11282 None:intergenic 25.0%
! ACATCATAAATTTGTAATGC+CGG - contig347end:14773-14792 None:intergenic 25.0%
! AGAAATTCATTAATCTGTGA+AGG - contig347end:12138-12157 None:intergenic 25.0%
! AGAGTATACTACAATATAAC+AGG - contig347end:10464-10483 None:intergenic 25.0%
! AGGTGCATATAATATAAGAA+AGG - contig347end:10444-10463 None:intergenic 25.0%
! AGTAAAAAATTCTAGTGAAG+AGG - contig347end:14080-14099 None:intergenic 25.0%
! ATATCATACTTATTTGTCGA+TGG - contig347end:8922-8941 None:intergenic 25.0%
! ATCAAGAATTAAGCAATAGT+GGG - contig347end:11262-11281 None:intergenic 25.0%
! ATGTGTTAGTTATATCCATT+AGG - contig347end:10998-11017 None:intergenic 25.0%
! CATAATGAATTTATCTTGGA+TGG + contig347end:13382-13401 MsG0080048528.01.T01:intron 25.0%
! GAATGAATAAAACGAAAAGT+TGG - contig347end:9192-9211 None:intergenic 25.0%
! GCCAAATATAAAAAACCTAA+TGG + contig347end:10980-10999 MsG0080048528.01.T01:intron 25.0%
! GCTTACCGTAATAAAAATTT+CGG - contig347end:9725-9744 None:intergenic 25.0%
! GGAAGTAAAATAAATAAGTG+TGG - contig347end:12163-12182 None:intergenic 25.0%
! GTTATATTGTAGTATACTCT+TGG + contig347end:10464-10483 MsG0080048528.01.T01:intron 25.0%
! TTATCTAGAAAGCTATTGTT+AGG + contig347end:12587-12606 MsG0080048528.01.T01:intron 25.0%
! TTCATAAAACTTTCGATACA+AGG + contig347end:12841-12860 MsG0080048528.01.T01:intron 25.0%
! TTTCATAATGAAATTGAACC+AGG + contig347end:10713-10732 MsG0080048528.01.T01:intron 25.0%
!! AAATGAGTTGACTTAAAAGT+AGG - contig347end:9271-9290 None:intergenic 25.0%
!! AAGTTGTGATAGGATAATTT+TGG - contig347end:9242-9261 None:intergenic 25.0%
!! ATTTTGTCATAACAAGTGTT+AGG + contig347end:14451-14470 MsG0080048528.01.T01:intron 25.0%
!! CAATGGTTCAATTTTTCTTT+TGG - contig347end:8746-8765 None:intergenic 25.0%
!! CATTTAAAGCTTCAAAATGT+TGG + contig347end:13548-13567 MsG0080048528.01.T01:intron 25.0%
!!! AACACTTGTTATGACAAAAT+AGG - contig347end:14451-14470 None:intergenic 25.0%
!!! AAGTTTTATGAACTATATGG+TGG - contig347end:12833-12852 None:intergenic 25.0%
!!! ATAAGCTGACTTTTTTTTGA+AGG + contig347end:9561-9580 MsG0080048528.01.T02:intron 25.0%
!!! CAACATTTTGAAGCTTTAAA+TGG - contig347end:13550-13569 None:intergenic 25.0%
!!! CAGATGTGATTTCTAAAATA+TGG - contig347end:13310-13329 None:intergenic 25.0%
!!! CGAAAGTTTTATGAACTATA+TGG - contig347end:12836-12855 None:intergenic 25.0%
!!! GTCAACTCATTTTTTTTTGA+AGG + contig347end:9279-9298 MsG0080048528.01.T02:intron 25.0%
!!! GTTGTTTTTAAGAACTTGTT+TGG + contig347end:13858-13877 MsG0080048528.01.T01:intron 25.0%
AAACCATGTAAAAGGACAAT+TGG - contig347end:11589-11608 None:intergenic 30.0%
AACTAGTAACTACTCAGATA+AGG - contig347end:10170-10189 None:intergenic 30.0%
AACTTACATTTGTCCAATCA+AGG - contig347end:14271-14290 None:intergenic 30.0%
AAGAAAATCATGAACATGTG+CGG - contig347end:8004-8023 None:intergenic 30.0%
AATAGGATTATAGGATAGGA+TGG + contig347end:10805-10824 MsG0080048528.01.T01:intron 30.0%
ACATATGAATAGAAGGCAAA+CGG - contig347end:8685-8704 None:intergenic 30.0%
ACTCAGATAAGGAAAATACT+TGG - contig347end:10159-10178 None:intergenic 30.0%
AGAAAACACTCATAATTTGG+GGG + contig347end:14931-14950 MsG0080048528.01.T01:CDS 30.0%
AGATGTTATGGTTTACTGAT+GGG + contig347end:8335-8354 MsG0080048528.01.T02:intron 30.0%
AGCAGAAAACACTCATAATT+TGG + contig347end:14928-14947 MsG0080048528.01.T01:CDS 30.0%
AGTAAACCATAACATCTACA+TGG - contig347end:8332-8351 None:intergenic 30.0%
AGTATAGATCTTCTATCTAG+TGG - contig347end:8306-8325 None:intergenic 30.0%
ATCTTACTTAAGGTCTTCTT+TGG + contig347end:11227-11246 MsG0080048528.01.T01:intron 30.0%
ATCTTCATTCCAAAACATGA+AGG + contig347end:12985-13004 MsG0080048528.01.T01:intron 30.0%
ATGCTAGTGTATATACAGAA+GGG + contig347end:12463-12482 MsG0080048528.01.T01:CDS 30.0%
ATGGATACCACATTGTATTT+AGG + contig347end:13792-13811 MsG0080048528.01.T01:intron 30.0%
ATGTAGAAACTGTTAAGAGT+GGG - contig347end:12777-12796 None:intergenic 30.0%
CACCTACTTATACAAAAATC+AGG - contig347end:13943-13962 None:intergenic 30.0%
CAGAAAACACTCATAATTTG+GGG + contig347end:14930-14949 MsG0080048528.01.T01:CDS 30.0%
CATTAAAAAGCCGATGATAT+TGG + contig347end:12241-12260 MsG0080048528.01.T01:CDS 30.0%
CTCAGATAAGGAAAATACTT+GGG - contig347end:10158-10177 None:intergenic 30.0%
GAAAGGAATGAACATAACAT+AGG - contig347end:11821-11840 None:intergenic 30.0%
GCAGAAAACACTCATAATTT+GGG + contig347end:14929-14948 MsG0080048528.01.T01:CDS 30.0%
GCAGATAAAAATGGTATTTC+CGG + contig347end:14751-14770 MsG0080048528.01.T01:intron 30.0%
GGTTATCATATTGTGTGATT+CGG + contig347end:12065-12084 MsG0080048528.01.T01:intron 30.0%
GTATAGATCTTCTATCTAGT+GGG - contig347end:8305-8324 None:intergenic 30.0%
GTTCATTATAAGGAGTTTCT+TGG + contig347end:8177-8196 MsG0080048528.01.T02:CDS 30.0%
TAATGTAGGATTTCCAAAAC+TGG - contig347end:12226-12245 None:intergenic 30.0%
TAGATGTTATGGTTTACTGA+TGG + contig347end:8334-8353 MsG0080048528.01.T02:intron 30.0%
TCATTAATGTTGTGTTTACG+AGG + contig347end:8616-8635 MsG0080048528.01.T02:intron 30.0%
TCTTACAGTGAACAAATGAT+GGG - contig347end:11186-11205 None:intergenic 30.0%
TGAATGGTTATCAATTCAGT+GGG + contig347end:15344-15363 MsG0080048528.01.T01:three_prime_UTR 30.0%
TGAATGTCCATTCAAGTATA+TGG - contig347end:15496-15515 None:intergenic 30.0%
TGACTAAAATGAAGAGAGAA+AGG - contig347end:11838-11857 None:intergenic 30.0%
TGGATACCACATTGTATTTA+GGG + contig347end:13793-13812 MsG0080048528.01.T01:intron 30.0%
TTAATTAGCATACAAGTACC+TGG - contig347end:11938-11957 None:intergenic 30.0%
TTAGTTGTCTTTCCAACTAT+GGG + contig347end:13767-13786 MsG0080048528.01.T01:intron 30.0%
TTCTGTTGTGAAACTCATAA+AGG + contig347end:15181-15200 MsG0080048528.01.T01:CDS 30.0%
TTGAATGGTTATCAATTCAG+TGG + contig347end:15343-15362 MsG0080048528.01.T01:three_prime_UTR 30.0%
TTGAGAATGTAGTTGCTTAA+AGG - contig347end:13283-13302 None:intergenic 30.0%
TTTACTGTCTTTGTATCCTT+CGG - contig347end:15215-15234 None:intergenic 30.0%
TTTAGGTCTCATCTTACTTA+AGG + contig347end:11217-11236 MsG0080048528.01.T01:intron 30.0%
! AAAGGTTTAACTTACGGAAA+CGG - contig347end:10390-10409 None:intergenic 30.0%
! AATCCAATTGTCCTTTTACA+TGG + contig347end:11583-11602 MsG0080048528.01.T01:CDS 30.0%
! AGTTAAAGAGTTGATTGACA+AGG + contig347end:11345-11364 MsG0080048528.01.T01:intron 30.0%
! ATTTTTGTATAAGTAGGTGC+CGG + contig347end:13944-13963 MsG0080048528.01.T01:intron 30.0%
! GACCTGATTTTTGTATAAGT+AGG + contig347end:13938-13957 MsG0080048528.01.T01:intron 30.0%
! GGCTTTCAAATTTGTTTAAC+AGG + contig347end:14902-14921 MsG0080048528.01.T01:intron 30.0%
! GTTAATTTTATGATCAGTGG+TGG + contig347end:14713-14732 MsG0080048528.01.T01:CDS 30.0%
! TAGGCTATCTTCTAAAGAAA+TGG + contig347end:12109-12128 MsG0080048528.01.T01:intron 30.0%
! TAGTTTGCATATACACGTAA+CGG - contig347end:14215-14234 None:intergenic 30.0%
! TGAGATGACTTGCATAATAA+AGG - contig347end:10680-10699 None:intergenic 30.0%
! TTCACTATTTTCTATTGACG+AGG + contig347end:8104-8123 MsG0080048528.01.T02:CDS 30.0%
! TTGTGATAGGATAATTTTGG+AGG - contig347end:9239-9258 None:intergenic 30.0%
!! AATATGATATGAAGGTGCTA+TGG - contig347end:14565-14584 None:intergenic 30.0%
!! AATGTTGGGTTTTATGACTT+TGG + contig347end:13563-13582 MsG0080048528.01.T01:intron 30.0%
!! AGGGGAAGTATCAAAATATT+AGG + contig347end:13835-13854 MsG0080048528.01.T01:intron 30.0%
!! ATTGGTTTATCTACCAGTTT+TGG + contig347end:12210-12229 MsG0080048528.01.T01:intron 30.0%
!! ATTGTTTATTGATTTAGGGC+CGG + contig347end:11016-11035 MsG0080048528.01.T01:intron 30.0%
!! CCAAAAGTGTCAAAATCAAA+TGG - contig347end:8519-8538 None:intergenic 30.0%
!! CCATTTGATTTTGACACTTT+TGG + contig347end:8516-8535 MsG0080048528.01.T02:intron 30.0%
!! CGAATTTCTAAGTGTTTTTG+TGG + contig347end:10635-10654 MsG0080048528.01.T01:intron 30.0%
!! GGGGAAGTATCAAAATATTA+GGG + contig347end:13836-13855 MsG0080048528.01.T01:intron 30.0%
!! TCATGTTTTACCACTTTTCT+TGG - contig347end:8462-8481 None:intergenic 30.0%
!! TTTATTTCTGAAGTTACCCT+TGG + contig347end:11655-11674 MsG0080048528.01.T01:intron 30.0%
!! TTTTCTTGGTGCATCTTTTA+GGG - contig347end:8448-8467 None:intergenic 30.0%
!!! ACTAGTTAGTTCCAGTTTTT+TGG + contig347end:10183-10202 MsG0080048528.01.T01:five_prime_UTR 30.0%
!!! GTACTTTTGGTTTGTATGAT+TGG - contig347end:13363-13382 None:intergenic 30.0%
!!! GTTTGGTGTTTTTCCTAAAA+AGG + contig347end:15301-15320 MsG0080048528.01.T01:three_prime_UTR 30.0%
!!! TATCATCGGCTTTTTAATGT+AGG - contig347end:12240-12259 None:intergenic 30.0%
AAAAAGCCGATGATATTGGT+TGG + contig347end:12245-12264 MsG0080048528.01.T01:CDS 35.0%
AAAAGATGCACCAAGAAAAG+TGG + contig347end:8449-8468 MsG0080048528.01.T02:intron 35.0%
AAAAGGACTGGAAACAGAAA+AGG - contig347end:14017-14036 None:intergenic 35.0%
AAATATGCAGGAGACAGAAT+TGG + contig347end:11623-11642 MsG0080048528.01.T01:intron 35.0%
AAGAGATTAGATGCTTAGGA+AGG - contig347end:14528-14547 None:intergenic 35.0%
AAGCATCTAATCTCTTACCA+AGG + contig347end:14532-14551 MsG0080048528.01.T01:intron 35.0%
ACAACAATGTCATGTCTTCT+AGG + contig347end:8592-8611 MsG0080048528.01.T02:intron 35.0%
ACAACACATACAACACATCT+GGG + contig347end:10075-10094 MsG0080048528.01.T01:intron 35.0%
ACAGGTGCTAAAAAATATGC+AGG + contig347end:11611-11630 MsG0080048528.01.T01:intron 35.0%
ACCTGAACTGTTTATAAGTG+GGG + contig347end:10915-10934 MsG0080048528.01.T01:intron 35.0%
ACCTGTCAAAACCATGTAAA+AGG - contig347end:11597-11616 None:intergenic 35.0%
ACCTTCTTCATAGAGTTCAA+AGG + contig347end:8562-8581 MsG0080048528.01.T02:intron 35.0%
ACTCAACAGTACTTGTGTAA+GGG + contig347end:11289-11308 MsG0080048528.01.T01:intron 35.0%
ACTTAGCCATGTAGATGTTA+TGG + contig347end:8323-8342 MsG0080048528.01.T02:intron 35.0%
AGAGCATGCAGTTCATTATA+AGG + contig347end:8167-8186 MsG0080048528.01.T02:CDS 35.0%
AGATAATTGACAGTGATGTG+TGG - contig347end:12573-12592 None:intergenic 35.0%
AGCATATTACGATACTCTAC+TGG - contig347end:8066-8085 None:intergenic 35.0%
AGCTAGGGAACATTGATATA+AGG - contig347end:13117-13136 None:intergenic 35.0%
AGTTTGCATATACACGTAAC+GGG - contig347end:14214-14233 None:intergenic 35.0%
ATAATGAGGAGTGAAATCCA+AGG - contig347end:11675-11694 None:intergenic 35.0%
ATAATTGACTGCAAAGTCGA+TGG - contig347end:12294-12313 None:intergenic 35.0%
ATACACATATCCATTGCTTG+AGG + contig347end:11720-11739 MsG0080048528.01.T01:CDS 35.0%
ATAGCTCATAACAAACCGTT+TGG + contig347end:14384-14403 MsG0080048528.01.T01:intron 35.0%
ATAGGATAGGATGGAAACTA+TGG + contig347end:10814-10833 MsG0080048528.01.T01:intron 35.0%
ATGAGTTTCACAACAGAATC+CGG - contig347end:15179-15198 None:intergenic 35.0%
ATGGCAATAAACAATGCAAG+CGG - contig347end:14676-14695 None:intergenic 35.0%
ATTTGGCGTATAATTGCATC+AGG - contig347end:15122-15141 None:intergenic 35.0%
CAGAGAAATGACAGAATGTT+TGG + contig347end:15284-15303 MsG0080048528.01.T01:three_prime_UTR 35.0%
CATAGTTGGAAAGACAACTA+AGG - contig347end:13768-13787 None:intergenic 35.0%
CCTTCTTCATAGAGTTCAAA+GGG + contig347end:8563-8582 MsG0080048528.01.T02:intron 35.0%
CTAGACAGAATGCAAGTTTA+AGG + contig347end:7968-7987 MsG0080048528.01.T02:CDS 35.0%
CTAGTGGAATCATTGAGTTA+TGG + contig347end:15378-15397 MsG0080048528.01.T01:three_prime_UTR 35.0%
CTTAGTTGTCTTTCCAACTA+TGG + contig347end:13766-13785 MsG0080048528.01.T01:intron 35.0%
CTTCAGATTGAAGATGTATC+TGG + contig347end:10531-10550 MsG0080048528.01.T01:intron 35.0%
GAAAACACTCATAATTTGGG+GGG + contig347end:14932-14951 MsG0080048528.01.T01:CDS 35.0%
GAATGGTTATCAATTCAGTG+GGG + contig347end:15345-15364 MsG0080048528.01.T01:three_prime_UTR 35.0%
GACCTGAACTGTTTATAAGT+GGG + contig347end:10914-10933 MsG0080048528.01.T01:intron 35.0%
GATCTTCACGTAGAATCTTA+AGG + contig347end:12638-12657 MsG0080048528.01.T01:intron 35.0%
GATGCTAGTGTATATACAGA+AGG + contig347end:12462-12481 MsG0080048528.01.T01:CDS 35.0%
GATGTAGAAACTGTTAAGAG+TGG - contig347end:12778-12797 None:intergenic 35.0%
GCAGCTTGAAATTTGAATCA+AGG - contig347end:13513-13532 None:intergenic 35.0%
GGCAATGTTAGTATTATGCT+GGG - contig347end:11394-11413 None:intergenic 35.0%
GTACACACATGACTTTGTTA+TGG + contig347end:8206-8225 MsG0080048528.01.T02:CDS 35.0%
GTCGTAGATCTATGATTCAA+TGG - contig347end:8763-8782 None:intergenic 35.0%
GTCTTACAGTGAACAAATGA+TGG - contig347end:11187-11206 None:intergenic 35.0%
GTGAGTATTAGTGAAGAAGA+AGG + contig347end:8257-8276 MsG0080048528.01.T02:intron 35.0%
TAAAAAGGAACCAGTAGTGA+TGG + contig347end:15316-15335 MsG0080048528.01.T01:three_prime_UTR 35.0%
TAAACTTGCATTCTGTCTAG+TGG - contig347end:7968-7987 None:intergenic 35.0%
TAATGAGGAGTGAAATCCAA+GGG - contig347end:11674-11693 None:intergenic 35.0%
TACTCTGAATTACGTGGAAA+GGG + contig347end:10737-10756 MsG0080048528.01.T01:intron 35.0%
TAGCTCACATCACATGTAAA+TGG - contig347end:13456-13475 None:intergenic 35.0%
TAGCTCATAACAAACCGTTT+GGG + contig347end:14385-14404 MsG0080048528.01.T01:intron 35.0%
TAGGAAGGAAAAGTTGTGAT+AGG - contig347end:9252-9271 None:intergenic 35.0%
TATATGTGTGGATGTCGTAT+TGG - contig347end:10583-10602 None:intergenic 35.0%
TATCAAATGCTCATCCAACA+AGG - contig347end:13892-13911 None:intergenic 35.0%
TATTGTAGTATACTCTTGGC+TGG + contig347end:10468-10487 MsG0080048528.01.T01:intron 35.0%
TGAAGAAGGTCAACAATCTA+TGG - contig347end:8552-8571 None:intergenic 35.0%
TGACCTGAACTGTTTATAAG+TGG + contig347end:10913-10932 MsG0080048528.01.T01:intron 35.0%
TGCAATAATGTGAAAAGGAC+TGG - contig347end:14029-14048 None:intergenic 35.0%
TGGTAAGAGATTAGATGCTT+AGG - contig347end:14532-14551 None:intergenic 35.0%
TGTAGAAACTGTTAAGAGTG+GGG - contig347end:12776-12795 None:intergenic 35.0%
TTACTCTGAATTACGTGGAA+AGG + contig347end:10736-10755 MsG0080048528.01.T01:intron 35.0%
TTAGTTCCCTTCACTGAAAA+TGG + contig347end:10220-10239 MsG0080048528.01.T01:exon 35.0%
TTATATCAATGTTCCCTAGC+TGG + contig347end:13116-13135 MsG0080048528.01.T01:intron 35.0%
TTCACACAACTACTCATGAT+AGG - contig347end:11541-11560 None:intergenic 35.0%
TTGATTCTGTTGACGTCTTT+AGG - contig347end:10323-10342 None:intergenic 35.0%
! AAGGTTTAACTTACGGAAAC+GGG - contig347end:10389-10408 None:intergenic 35.0%
! AAGTGATGATGAAGATTGAG+TGG + contig347end:9958-9977 MsG0080048528.01.T02:intron 35.0%
! ACTGAAAGATATGTTGGTGA+AGG - contig347end:14243-14262 None:intergenic 35.0%
! ATTCCAAAACATGAAGGCAT+TGG + contig347end:12991-13010 MsG0080048528.01.T01:intron 35.0%
! CAAGCTTATTGCTGATTATG+CGG - contig347end:14965-14984 None:intergenic 35.0%
! CATAAAGGAATTTGTTCCGA+AGG + contig347end:15196-15215 MsG0080048528.01.T01:CDS 35.0%
! CGTAAAGAGAGTATAAGACA+CGG + contig347end:12611-12630 MsG0080048528.01.T01:intron 35.0%
! GAGTTGACTTAAAAGTAGGA+AGG - contig347end:9267-9286 None:intergenic 35.0%
! GCGGTTAATTTTATGATCAG+TGG + contig347end:14710-14729 MsG0080048528.01.T01:CDS 35.0%
! GCTAGTACTGAAAGATATGT+TGG - contig347end:14249-14268 None:intergenic 35.0%
! GTAAAGAGAGTATAAGACAC+GGG + contig347end:12612-12631 MsG0080048528.01.T01:intron 35.0%
! GTCACATTTTCATCCAATGT+CGG + contig347end:12669-12688 MsG0080048528.01.T01:intron 35.0%
! TAAAGAGTTGATTGACAAGG+AGG + contig347end:11348-11367 MsG0080048528.01.T01:intron 35.0%
! TAACCAATGCCTTCATGTTT+TGG - contig347end:12997-13016 None:intergenic 35.0%
! TGTTGCTTCGCAGATAAAAA+TGG + contig347end:14742-14761 MsG0080048528.01.T01:CDS 35.0%
! TTCTAGCTATCCCTATTGAT+GGG + contig347end:8022-8041 MsG0080048528.01.T02:CDS 35.0%
!! CTTTTCTTGGTGCATCTTTT+AGG - contig347end:8449-8468 None:intergenic 35.0%
!! GATTGCTTTTGTCATCCAAA+AGG + contig347end:8638-8657 MsG0080048528.01.T02:intron 35.0%
!! GTAAGACTTTTCCTAGCTTT+AGG + contig347end:11200-11219 MsG0080048528.01.T01:intron 35.0%
!! GTAGTTGCTTAAAGGTATCA+TGG - contig347end:13275-13294 None:intergenic 35.0%
!!! ATCACTACTGGTTCCTTTTT+AGG - contig347end:15317-15336 None:intergenic 35.0%
!!! GGGATAAAGGCTTTTTAAGT+AGG - contig347end:12546-12565 None:intergenic 35.0%
!!! TCCTTTTACATGGTTTTGAC+AGG + contig347end:11593-11612 MsG0080048528.01.T01:CDS 35.0%
!!! TTTTACAAAACCGACTTGCA+AGG - contig347end:10951-10970 None:intergenic 35.0%
!!! TTTTGGTTTGTATGATTGGC+AGG - contig347end:13359-13378 None:intergenic 35.0%
AAGCAATTGCTAACTCCAAG+AGG - contig347end:13415-13434 None:intergenic 40.0%
AATAAACCACTACTCATGCG+CGG - contig347end:8841-8860 None:intergenic 40.0%
AATCAGCAATAAGCTTGCAG+TGG + contig347end:14968-14987 MsG0080048528.01.T01:CDS 40.0%
ACAATGATACATAGCCTAGG+AGG - contig347end:13661-13680 None:intergenic 40.0%
ACTAGAGTTTCGTTACACGT+GGG + contig347end:8387-8406 MsG0080048528.01.T02:intron 40.0%
AGAGTTAGAGACCTAAAGCA+AGG - contig347end:11065-11084 None:intergenic 40.0%
AGATCTCCACATTAGGCTAA+AGG + contig347end:12935-12954 MsG0080048528.01.T01:intron 40.0%
AGTATAATAACGCCAAGCAC+CGG - contig347end:13966-13985 None:intergenic 40.0%
AGTCATCTCATGCATCAGAA+AGG + contig347end:10690-10709 MsG0080048528.01.T01:intron 40.0%
AGTGTATATACAGAAGGGAC+AGG + contig347end:12468-12487 MsG0080048528.01.T01:CDS 40.0%
ATATGGTGGTTAGATGACGT+GGG - contig347end:12819-12838 None:intergenic 40.0%
ATTAAATCTGGACCGCACAA+AGG - contig347end:10116-10135 None:intergenic 40.0%
ATTCAATGCTCCATCACTAC+TGG - contig347end:15329-15348 None:intergenic 40.0%
ATTGAGTGGCAGTTATCTGA+GGG + contig347end:9972-9991 MsG0080048528.01.T01:five_prime_UTR 40.0%
CAAAGTGTGCATTTCCCAAA+CGG - contig347end:14402-14421 None:intergenic 40.0%
CAATTGCCTTAACCTTAGAC+CGG - contig347end:11038-11057 None:intergenic 40.0%
CACAACACATACAACACATC+TGG + contig347end:10074-10093 MsG0080048528.01.T01:intron 40.0%
CACTCAACAGTACTTGTGTA+AGG + contig347end:11288-11307 MsG0080048528.01.T01:intron 40.0%
CCCTTTGAACTCTATGAAGA+AGG - contig347end:8566-8585 None:intergenic 40.0%
CCTGAAAAATGACCAGATCA+TGG - contig347end:12422-12441 None:intergenic 40.0%
CCTGAACTGTTTATAAGTGG+GGG + contig347end:10916-10935 MsG0080048528.01.T01:intron 40.0%
CTCAACAGTACTTGTGTAAG+GGG + contig347end:11290-11309 MsG0080048528.01.T01:intron 40.0%
CTGACAATGATACATAGCCT+AGG - contig347end:13664-13683 None:intergenic 40.0%
CTTGGACCAACCAATATCAT+CGG - contig347end:12254-12273 None:intergenic 40.0%
GACTGAGATCAACTACTACA+TGG + contig347end:8780-8799 MsG0080048528.01.T02:intron 40.0%
GACTTCTAACTCACACTTGA+TGG + contig347end:12691-12710 MsG0080048528.01.T01:intron 40.0%
GAGATAAGTATGAGAGGATG+AGG + contig347end:14110-14129 MsG0080048528.01.T01:intron 40.0%
GAGTTAGAGACCTAAAGCAA+GGG - contig347end:11064-11083 None:intergenic 40.0%
GATGTGTTGTATGTGTTGTG+TGG - contig347end:10074-10093 None:intergenic 40.0%
GCAATTGAAACCCTTGCTTT+AGG + contig347end:11051-11070 MsG0080048528.01.T01:intron 40.0%
GCATGAGCTGAACAATAATG+AGG - contig347end:11689-11708 None:intergenic 40.0%
GCATTGTTTATTGCCATGGT+GGG + contig347end:14679-14698 MsG0080048528.01.T01:CDS 40.0%
GCTTGCATTGTTTATTGCCA+TGG + contig347end:14675-14694 MsG0080048528.01.T01:CDS 40.0%
GGACTACAAACTACACCATT+AGG - contig347end:8664-8683 None:intergenic 40.0%
GGATGTCAGAGATAATAGAG+CGG - contig347end:13747-13766 None:intergenic 40.0%
GGGCAATGTTAGTATTATGC+TGG - contig347end:11395-11414 None:intergenic 40.0%
GGTAATAGCAGCCAAAAAAC+TGG - contig347end:10197-10216 None:intergenic 40.0%
GTAAGATGAGACCTAAAGCT+AGG - contig347end:11214-11233 None:intergenic 40.0%
GTAGAAACTGTTAAGAGTGG+GGG - contig347end:12775-12794 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG + contig347end:10016-10035 MsG0080048528.01.T01:intron 40.0%
GTTAGTATTATGCTGGGAGT+GGG - contig347end:11388-11407 None:intergenic 40.0%
GTTTGGAAAGTTGTCCTTGT+TGG + contig347end:13875-13894 MsG0080048528.01.T01:intron 40.0%
TATATGGTGGTTAGATGACG+TGG - contig347end:12820-12839 None:intergenic 40.0%
TCAGCAACGACCTTGAATAT+GGG - contig347end:10269-10288 None:intergenic 40.0%
TCTCTGTCAGAATGGCAAAA+GGG - contig347end:15270-15289 None:intergenic 40.0%
TGCATTGTTTATTGCCATGG+TGG + contig347end:14678-14697 MsG0080048528.01.T01:CDS 40.0%
TGGAGTTAGCAATTGCTTAC+TGG + contig347end:13417-13436 MsG0080048528.01.T01:intron 40.0%
TGTCACCGTGACATTAAATC+TGG + contig347end:10015-10034 MsG0080048528.01.T01:intron 40.0%
TGTCACCGTGACATTAAATC+TGG - contig347end:10034-10015 None:intergenic 40.0%
TGTCTGTGCTACGTATTTAC+CGG - contig347end:10511-10530 None:intergenic 40.0%
TGTTAGTATTATGCTGGGAG+TGG - contig347end:11389-11408 None:intergenic 40.0%
TGTTCAGCTCATGCTTAGAA+TGG + contig347end:11695-11714 MsG0080048528.01.T01:intron 40.0%
TTAGTATTATGCTGGGAGTG+GGG - contig347end:11387-11406 None:intergenic 40.0%
TTAGTTGTACCACTAAGCTG+AGG - contig347end:14850-14869 None:intergenic 40.0%
TTCAGCAACGACCTTGAATA+TGG - contig347end:10270-10289 None:intergenic 40.0%
TTCGTTACACGTGGGATTAT+GGG + contig347end:8395-8414 MsG0080048528.01.T02:intron 40.0%
TTCTCTGTCAGAATGGCAAA+AGG - contig347end:15271-15290 None:intergenic 40.0%
TTGTCATCCAAAAGGCCTAA+TGG + contig347end:8646-8665 MsG0080048528.01.T02:intron 40.0%
TTTCGTTACACGTGGGATTA+TGG + contig347end:8394-8413 MsG0080048528.01.T02:intron 40.0%
! AACTACACCATTAGGCCTTT+TGG - contig347end:8656-8675 None:intergenic 40.0%
! ACAGTGAACAAATGATGGGA+AGG - contig347end:11182-11201 None:intergenic 40.0%
! ACGTCTTTAGGAAGAAAGGA+AGG - contig347end:10311-10330 None:intergenic 40.0%
! AGAGCAACCATTTTCAGTGA+AGG - contig347end:10230-10249 None:intergenic 40.0%
! ATTCAAGTTACTCTCACCAC+TGG + contig347end:14152-14171 MsG0080048528.01.T01:intron 40.0%
! CACTCAAGCAGTAATTTGCA+AGG + contig347end:13476-13495 MsG0080048528.01.T01:intron 40.0%
! CAGTGAACAAATGATGGGAA+GGG - contig347end:11181-11200 None:intergenic 40.0%
! CATCACTAGAAAAGTACACG+TGG - contig347end:13633-13652 None:intergenic 40.0%
! CGTCTTTAGGAAGAAAGGAA+GGG - contig347end:10310-10329 None:intergenic 40.0%
! CTGATTTAAAACAGAGCCAG+TGG - contig347end:14171-14190 None:intergenic 40.0%
! CTGTCATTTCTCTGTCAGAA+TGG - contig347end:15278-15297 None:intergenic 40.0%
! CTTCTAGCTATCCCTATTGA+TGG + contig347end:8021-8040 MsG0080048528.01.T02:CDS 40.0%
! GAATTATCTAGCTCCAGCTA+GGG - contig347end:13132-13151 None:intergenic 40.0%
! GAGCAACCATTTTCAGTGAA+GGG - contig347end:10229-10248 None:intergenic 40.0%
! GTACAGATAGCTTGATGACT+GGG + contig347end:11315-11334 MsG0080048528.01.T01:intron 40.0%
! GTTATGGTTTACTGATGGGT+AGG + contig347end:8339-8358 MsG0080048528.01.T02:intron 40.0%
! GTTGACGTCTTTAGGAAGAA+AGG - contig347end:10315-10334 None:intergenic 40.0%
! TACAGATAGCTTGATGACTG+GGG + contig347end:11316-11335 MsG0080048528.01.T01:intron 40.0%
! TGAATTATCTAGCTCCAGCT+AGG - contig347end:13133-13152 None:intergenic 40.0%
! TGTACAGATAGCTTGATGAC+TGG + contig347end:11314-11333 MsG0080048528.01.T01:intron 40.0%
! TTGATAGCACATACAGCTTC+TGG - contig347end:12317-12336 None:intergenic 40.0%
!! AGTAGTGATGGAGCATTGAA+TGG + contig347end:15328-15347 MsG0080048528.01.T01:three_prime_UTR 40.0%
!! CTTTCAGTACTAGCCTTGAT+TGG + contig347end:14255-14274 MsG0080048528.01.T01:CDS 40.0%
!! GCTTAAAGGTATCATGGAGA+GGG - contig347end:13269-13288 None:intergenic 40.0%
!! TGCTTAAAGGTATCATGGAG+AGG - contig347end:13270-13289 None:intergenic 40.0%
!! TTATCTGAGGGAAAGCACTT+GGG + contig347end:9984-10003 MsG0080048528.01.T01:intron 40.0%
!!! CACTGGCTCTGTTTTAAATC+AGG + contig347end:14169-14188 MsG0080048528.01.T01:intron 40.0%
!!! CCATGATCTGGTCATTTTTC+AGG + contig347end:12419-12438 MsG0080048528.01.T01:intron 40.0%
!!! TGATCTGGTCATTTTTCAGG+TGG + contig347end:12422-12441 MsG0080048528.01.T01:intron 40.0%
ACACATTGCCACACAACATC+TGG + contig347end:10047-10066 MsG0080048528.01.T01:intron 45.0%
ACATGGGCCATTGACATTCT+TGG + contig347end:11757-11776 MsG0080048528.01.T01:CDS 45.0%
ACCCCAACCAAGAATGTCAA+TGG - contig347end:11767-11786 None:intergenic 45.0%
ACGACCTTGAATATGGGCAA+TGG - contig347end:10263-10282 None:intergenic 45.0%
ACTTGTTTCGCTCTGTGTTG+AGG + contig347end:12183-12202 MsG0080048528.01.T01:intron 45.0%
AGGAGGTAAACATGCATGTG+TGG + contig347end:8359-8378 MsG0080048528.01.T02:intron 45.0%
ATAAAATTGACGCGCTGCGT+AGG - contig347end:11101-11120 None:intergenic 45.0%
ATAAACCACTACTCATGCGC+GGG - contig347end:8840-8859 None:intergenic 45.0%
ATACGCCAAATACCCGATTG+TGG + contig347end:15131-15150 MsG0080048528.01.T01:CDS 45.0%
ATGAGGAAGGTGACCACAAT+CGG - contig347end:15147-15166 None:intergenic 45.0%
ATGCACGCCTTACGATAAAC+AGG - contig347end:8135-8154 None:intergenic 45.0%
CACAACACAACACCTTTGTG+CGG + contig347end:10101-10120 MsG0080048528.01.T01:intron 45.0%
CACATTGCCACACAACATCT+GGG + contig347end:10048-10067 MsG0080048528.01.T01:intron 45.0%
CCACGTAATTCAGAGTAACC+TGG - contig347end:10734-10753 None:intergenic 45.0%
CCAGGTTACTCTGAATTACG+TGG + contig347end:10731-10750 MsG0080048528.01.T01:intron 45.0%
CCCCCACTTATAAACAGTTC+AGG - contig347end:10919-10938 None:intergenic 45.0%
CCTAGCAACTTTACCTAGAG+CGG + contig347end:12494-12513 MsG0080048528.01.T01:CDS 45.0%
CCTCAGCAACAAAGCTATCA+AGG - contig347end:11985-12004 None:intergenic 45.0%
CCTTCCTCATGTTGAAAGAC+CGG + contig347end:15157-15176 MsG0080048528.01.T01:CDS 45.0%
CGAAAGAATCCTCAGCTTAG+TGG + contig347end:14838-14857 MsG0080048528.01.T01:intron 45.0%
CTAGTGACTATGCCATGATC+TGG + contig347end:12407-12426 MsG0080048528.01.T01:intron 45.0%
CTAGTGATGTCTATCCTCCT+AGG + contig347end:13644-13663 MsG0080048528.01.T01:intron 45.0%
CTTGTTTCGCTCTGTGTTGA+GGG + contig347end:12184-12203 MsG0080048528.01.T01:intron 45.0%
GAATCCGGTCTTTCAACATG+AGG - contig347end:15164-15183 None:intergenic 45.0%
GACTAGAGTTTCGTTACACG+TGG + contig347end:8386-8405 MsG0080048528.01.T02:intron 45.0%
GATTGAGTGGCAGTTATCTG+AGG + contig347end:9971-9990 MsG0080048528.01.T01:five_prime_UTR 45.0%
GCCATTGACATTCTTGGTTG+GGG + contig347end:11763-11782 MsG0080048528.01.T01:CDS 45.0%
GCGGTCCAGATTTAATGTCA+CGG + contig347end:10120-10139 MsG0080048528.01.T01:intron 45.0%
GCTGACCTAACCCATCAATA+GGG - contig347end:8035-8054 None:intergenic 45.0%
GGCCATTGACATTCTTGGTT+GGG + contig347end:11762-11781 MsG0080048528.01.T01:CDS 45.0%
GGTCAACAATCTATGGTGCT+AGG - contig347end:8545-8564 None:intergenic 45.0%
GGTGTGTCCTGTTTATCGTA+AGG + contig347end:8125-8144 MsG0080048528.01.T02:CDS 45.0%
GGTTGGGGTTTCTCTGATTT+AGG + contig347end:11778-11797 MsG0080048528.01.T01:CDS 45.0%
GTATGGATCACCTGTTGTAG+TGG - contig347end:8818-8837 None:intergenic 45.0%
GTGAGTTAGAAGTCCGACAT+TGG - contig347end:12685-12704 None:intergenic 45.0%
GTGGCCCAGATTTAATGTCA+CGG - contig347end:10023-10042 None:intergenic 45.0%
TATCCATTGCTTGAGGAAGC+TGG + contig347end:11727-11746 MsG0080048528.01.T01:CDS 45.0%
TCAACACAGAGCGAAACAAG+TGG - contig347end:12184-12203 None:intergenic 45.0%
TGCTGACCTAACCCATCAAT+AGG - contig347end:8036-8055 None:intergenic 45.0%
TGGGGAGAGATAAGTATGAG+AGG + contig347end:14104-14123 MsG0080048528.01.T01:intron 45.0%
TGGTATCCATAGCCCATAGT+TGG - contig347end:13782-13801 None:intergenic 45.0%
TGGTTGCCTTTAGCCTAATG+TGG - contig347end:12944-12963 None:intergenic 45.0%
TGTTTATCGTAAGGCGTGCA+TGG + contig347end:8134-8153 MsG0080048528.01.T02:CDS 45.0%
TTACACGTGGGATTATGGGT+CGG + contig347end:8399-8418 MsG0080048528.01.T02:intron 45.0%
TTCAGTGAAGGGAACTAAGC+TGG - contig347end:10218-10237 None:intergenic 45.0%
TTGCGTGAAACCACTACAAC+AGG + contig347end:8805-8824 MsG0080048528.01.T02:intron 45.0%
TTGGATGGCTCATAACCTCT+TGG + contig347end:13397-13416 MsG0080048528.01.T01:intron 45.0%
TTTGATACCACATCGCAGGA+AGG - contig347end:11900-11919 None:intergenic 45.0%
! AAAGCGCGAACACTTTTACC+AGG + contig347end:11917-11936 MsG0080048528.01.T01:CDS 45.0%
! ATATTGGTTGGTCCAAGCCT+TGG + contig347end:12257-12276 MsG0080048528.01.T01:CDS 45.0%
! ATGGTTTACTGATGGGTAGG+AGG + contig347end:8342-8361 MsG0080048528.01.T02:intron 45.0%
! ATTATGGGTCGGGGCTTTTA+CGG + contig347end:8410-8429 MsG0080048528.01.T02:intron 45.0%
! ATTGATTTAGGGCCGGTCTA+AGG + contig347end:11023-11042 MsG0080048528.01.T01:intron 45.0%
! GGTGCTATGGTTGATATCCT+TGG - contig347end:14552-14571 None:intergenic 45.0%
! GTCTTTCCAACTATGGGCTA+TGG + contig347end:13773-13792 MsG0080048528.01.T01:intron 45.0%
! GTGGATTGACTCACACTTGA+GGG - contig347end:12738-12757 None:intergenic 45.0%
! TGTGCCATTGCCCATATTCA+AGG + contig347end:10256-10275 MsG0080048528.01.T01:CDS 45.0%
! TTCTATCTAGTGGGTCAGTG+AGG - contig347end:8296-8315 None:intergenic 45.0%
! TTGTTTATTGCCATGGTGGG+AGG + contig347end:14682-14701 MsG0080048528.01.T01:CDS 45.0%
! TTTTCCTTGTTCTGCACCAG+TGG - contig347end:11565-11584 None:intergenic 45.0%
!! AGTGGATTGACTCACACTTG+AGG - contig347end:12739-12758 None:intergenic 45.0%
!! ATATTTTGGGAGTCGCGCAT+TGG + contig347end:10882-10901 MsG0080048528.01.T01:intron 45.0%
!! CACAAAGGTGTTGTGTTGTG+TGG - contig347end:10101-10120 None:intergenic 45.0%
!! CCTTGATAGCTTTGTTGCTG+AGG + contig347end:11982-12001 MsG0080048528.01.T01:intron 45.0%
!! GCTATCCCTATTGATGGGTT+AGG + contig347end:8027-8046 MsG0080048528.01.T02:CDS 45.0%
!! GTTATCTGAGGGAAAGCACT+TGG + contig347end:9983-10002 MsG0080048528.01.T01:intron 45.0%
!! TGATAGCTTTGTTGCTGAGG+TGG + contig347end:11985-12004 MsG0080048528.01.T01:intron 45.0%
!!! GGTTTTAGACTCTAGTGGAC+CGG + contig347end:10489-10508 MsG0080048528.01.T01:intron 45.0%
!!! TGGCTGGTTTTAGACTCTAG+TGG + contig347end:10484-10503 MsG0080048528.01.T01:intron 45.0%
!! AAAAAAGTTTATATATTTAT+AGG + contig347end:9682-9701 MsG0080048528.01.T02:intron 5.0%
!! AAAAATTTATATTTAATTCA+TGG - contig347end:9419-9438 None:intergenic 5.0%
!!! ATTGATATTTTTTTTTTAAA+CGG - contig347end:11416-11435 None:intergenic 5.0%
!!! ATTTAATTTAATCATTTTTT+TGG + contig347end:13238-13257 MsG0080048528.01.T01:intron 5.0%
!!! TTTAATTTAATCATTTTTTT+GGG + contig347end:13239-13258 MsG0080048528.01.T01:intron 5.0%
AACAACCAAGCGACGCACTT+AGG + contig347end:8892-8911 MsG0080048528.01.T02:intron 50.0%
AACGCCTGTGATACCACTGT+TGG + contig347end:12884-12903 MsG0080048528.01.T01:intron 50.0%
ACAACCAAGCGACGCACTTA+GGG + contig347end:8893-8912 MsG0080048528.01.T02:intron 50.0%
ACAGTGGTATCACAGGCGTT+TGG - contig347end:12884-12903 None:intergenic 50.0%
ACGCCTGTGATACCACTGTT+GGG + contig347end:12885-12904 MsG0080048528.01.T01:intron 50.0%
ACGGGTGAGATCTCCACATT+AGG + contig347end:12928-12947 MsG0080048528.01.T01:intron 50.0%
AGACCAGCTTCCTCAAGCAA+TGG - contig347end:11733-11752 None:intergenic 50.0%
ATACCACTGTTGGGTCACGA+TGG + contig347end:12894-12913 MsG0080048528.01.T01:intron 50.0%
ATCACAGGCGTTTGGGCTAA+AGG - contig347end:12876-12895 None:intergenic 50.0%
CAGTGGTATCACAGGCGTTT+GGG - contig347end:12883-12902 None:intergenic 50.0%
CCGGTCTTTCAACATGAGGA+AGG - contig347end:15160-15179 None:intergenic 50.0%
GAAACTTCCTTCCTGCGATG+TGG + contig347end:11890-11909 MsG0080048528.01.T01:CDS 50.0%
GAGTAGTTGTGTGAAGCCAC+TGG + contig347end:11546-11565 MsG0080048528.01.T01:CDS 50.0%
GATGTGTGGCTGAGGGATAA+AGG - contig347end:12559-12578 None:intergenic 50.0%
GCAATCCTCACCTTGCAAGT+CGG + contig347end:10938-10957 MsG0080048528.01.T01:intron 50.0%
GCTCTGTGTTGAGGGTGAAT+TGG + contig347end:12192-12211 MsG0080048528.01.T01:intron 50.0%
GGGCCATTGACATTCTTGGT+TGG + contig347end:11761-11780 MsG0080048528.01.T01:CDS 50.0%
GGGGGAACATATGTGATGAG+TGG - contig347end:12757-12776 None:intergenic 50.0%
GGTGACCACAATCGGGTATT+TGG - contig347end:15139-15158 None:intergenic 50.0%
TACACGTGGGATTATGGGTC+GGG + contig347end:8400-8419 MsG0080048528.01.T02:intron 50.0%
TACCACTGTTGGGTCACGAT+GGG + contig347end:12895-12914 MsG0080048528.01.T01:intron 50.0%
TAGCGAGAGTTCGAGCGAAA+GGG - contig347end:10349-10368 None:intergenic 50.0%
TATCAATTCAGTGGGGCTGC+TGG + contig347end:15352-15371 MsG0080048528.01.T01:three_prime_UTR 50.0%
TGACAGTGATGTGTGGCTGA+GGG - contig347end:12566-12585 None:intergenic 50.0%
TGACCCAACAGTGGTATCAC+AGG - contig347end:12891-12910 None:intergenic 50.0%
TGAGGAAGGTGACCACAATC+GGG - contig347end:15146-15165 None:intergenic 50.0%
TGCGCGACTCCCAAAATATG+AGG - contig347end:10881-10900 None:intergenic 50.0%
TGTGTGGCAATGTGTGTGTG+TGG - contig347end:10042-10061 None:intergenic 50.0%
TGTTGTCCAAACCACTTGCG+TGG - contig347end:12964-12983 None:intergenic 50.0%
TTGACAGTGATGTGTGGCTG+AGG - contig347end:12567-12586 None:intergenic 50.0%
! AGATAGCTTGATGACTGGGG+TGG + contig347end:11319-11338 MsG0080048528.01.T01:intron 50.0%
! ATAGCTTGATGACTGGGGTG+GGG + contig347end:11321-11340 MsG0080048528.01.T01:intron 50.0%
! CCGCTCTAGGTAAAGTTGCT+AGG - contig347end:12497-12516 None:intergenic 50.0%
! GATAGCTTGATGACTGGGGT+GGG + contig347end:11320-11339 MsG0080048528.01.T01:intron 50.0%
! GGAGATCTCACCCGTGTTTT+AGG - contig347end:12923-12942 None:intergenic 50.0%
! TTAGGGCCGGTCTAAGGTTA+AGG + contig347end:11029-11048 MsG0080048528.01.T01:intron 50.0%
!! CAAAACCGACTTGCAAGGTG+AGG - contig347end:10946-10965 None:intergenic 50.0%
!! TATAAGTAGGTGCCGGTGCT+TGG + contig347end:13951-13970 MsG0080048528.01.T01:intron 50.0%
AAATTGACGCGCTGCGTAGG+AGG - contig347end:11098-11117 None:intergenic 55.0%
ACACGTGGGATTATGGGTCG+GGG + contig347end:8401-8420 MsG0080048528.01.T02:intron 55.0%
ACCACTGTTGGGTCACGATG+GGG + contig347end:12896-12915 MsG0080048528.01.T01:intron 55.0%
ACGATGGGGGCCTAAAACAC+GGG + contig347end:12910-12929 MsG0080048528.01.T01:intron 55.0%
AGGCAACCACGCAAGTGGTT+TGG + contig347end:12955-12974 MsG0080048528.01.T01:intron 55.0%
CACGATGGGGGCCTAAAACA+CGG + contig347end:12909-12928 MsG0080048528.01.T01:intron 55.0%
CGATGGCAACAGCAGAACCA+AGG - contig347end:12277-12296 None:intergenic 55.0%
CTAGAGCGGCAGCTTATGCT+GGG + contig347end:12508-12527 MsG0080048528.01.T01:CDS 55.0%
GAAGCCACTGGTGCAGAACA+AGG + contig347end:11558-11577 MsG0080048528.01.T01:CDS 55.0%
GATACCCTAAGTGCGTCGCT+TGG - contig347end:8900-8919 None:intergenic 55.0%
GCAACAGCAGAACCAAGGCT+TGG - contig347end:12272-12291 None:intergenic 55.0%
GCGCTTTGATACCACATCGC+AGG - contig347end:11904-11923 None:intergenic 55.0%
GCTAAAGGCAACCACGCAAG+TGG + contig347end:12950-12969 MsG0080048528.01.T01:intron 55.0%
GTAGCGAGAGTTCGAGCGAA+AGG - contig347end:10350-10369 None:intergenic 55.0%
TAGAGCGGCAGCTTATGCTG+GGG + contig347end:12509-12528 MsG0080048528.01.T01:CDS 55.0%
TCGCTCGAACTCTCGCTACA+CGG + contig347end:10351-10370 MsG0080048528.01.T01:CDS 55.0%
TGTGTGGCCCAGATGTTGTG+TGG - contig347end:10058-10077 None:intergenic 55.0%
! AGGAAGCTGGTCTCGAGACA+TGG + contig347end:11740-11759 MsG0080048528.01.T01:CDS 55.0%
! GGAAGCTGGTCTCGAGACAT+GGG + contig347end:11741-11760 MsG0080048528.01.T01:CDS 55.0%
! TAGCTTGATGACTGGGGTGG+GGG + contig347end:11322-11341 MsG0080048528.01.T01:intron 55.0%
CCACTACTCATGCGCGGGTA+TGG - contig347end:8835-8854 None:intergenic 60.0%
CCACTGTTGGGTCACGATGG+GGG + contig347end:12897-12916 MsG0080048528.01.T01:intron 60.0%
CCAGCATAAGCTGCCGCTCT+AGG - contig347end:12510-12529 None:intergenic 60.0%
CCATACCCGCGCATGAGTAG+TGG + contig347end:8832-8851 MsG0080048528.01.T02:intron 60.0%
CCTAGAGCGGCAGCTTATGC+TGG + contig347end:12507-12526 MsG0080048528.01.T01:CDS 60.0%
! GGGTCGGGGCTTTTACGGTA+AGG + contig347end:8415-8434 MsG0080048528.01.T02:intron 60.0%
ACCGCAGCATCCTCCCACCA+TGG - contig347end:14695-14714 None:intergenic 65.0%
CCCCCATCGTGACCCAACAG+TGG - contig347end:12900-12919 None:intergenic 65.0%
GTGGGGCTGCTGGTCACTAG+TGG + contig347end:15362-15381 MsG0080048528.01.T01:three_prime_UTR 65.0%
! GCCATGGTGGGAGGATGCTG+CGG + contig347end:14691-14710 MsG0080048528.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
contig347end gene 7961 15538 7961 ID=MsG0080048528.01;Name=MsG0080048528.01
contig347end mRNA 9970 15538 9970 ID=MsG0080048528.01.T01;Parent=MsG0080048528.01;Name=MsG0080048528.01.T01;_AED=0.39;_eAED=0.39;_QI=84|1|1|1|0.6|0.63|11|282|331
contig347end exon 9970 9992 9970 ID=MsG0080048528.01.T01:exon:37999;Parent=MsG0080048528.01.T01
contig347end exon 10178 10394 10178 ID=MsG0080048528.01.T01:exon:38000;Parent=MsG0080048528.01.T01
contig347end exon 12441 12530 12441 ID=MsG0080048528.01.T01:exon:38005;Parent=MsG0080048528.01.T01
contig347end exon 14191 14283 14191 ID=MsG0080048528.01.T01:exon:38006;Parent=MsG0080048528.01.T01
contig347end exon 14668 14763 14668 ID=MsG0080048528.01.T01:exon:38007;Parent=MsG0080048528.01.T01
contig347end exon 14924 14989 14924 ID=MsG0080048528.01.T01:exon:38008;Parent=MsG0080048528.01.T01
contig347end exon 15101 15538 15101 ID=MsG0080048528.01.T01:exon:38009;Parent=MsG0080048528.01.T01
contig347end five_prime_UTR 9970 9992 9970 ID=MsG0080048528.01.T01:five_prime_utr;Parent=MsG0080048528.01.T01
contig347end five_prime_UTR 10178 10238 10178 ID=MsG0080048528.01.T01:five_prime_utr;Parent=MsG0080048528.01.T01
contig347end CDS 10239 10394 10239 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 11520 11614 11520 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 11702 11799 11702 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 11889 11938 11889 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 12227 12322 12227 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 12441 12530 12441 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 14191 14283 14191 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 14668 14763 14668 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 14924 14989 14924 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end CDS 15101 15256 15101 ID=MsG0080048528.01.T01:cds;Parent=MsG0080048528.01.T01
contig347end three_prime_UTR 15257 15538 15257 ID=MsG0080048528.01.T01:three_prime_utr;Parent=MsG0080048528.01.T01
contig347end mRNA 7961 12551 7961 ID=MsG0080048528.01.T02;Parent=MsG0080048528.01;Name=MsG0080048528.01.T02;_AED=0.60;_eAED=0.61;_QI=0|0.83|0.57|0.85|0.83|0.85|7|0|296
contig347end exon 7961 8230 7961 ID=MsG0080048528.01.T02:exon:38010;Parent=MsG0080048528.01.T02
contig347end exon 10224 10394 10224 ID=MsG0080048528.01.T02:exon:38011;Parent=MsG0080048528.01.T02
contig347end exon 12441 12551 12441 ID=MsG0080048528.01.T02:exon:38012;Parent=MsG0080048528.01.T02
contig347end CDS 7961 8230 7961 ID=MsG0080048528.01.T02:cds;Parent=MsG0080048528.01.T02
contig347end CDS 10224 10394 10224 ID=MsG0080048528.01.T02:cds;Parent=MsG0080048528.01.T02
contig347end CDS 11520 11614 11520 ID=MsG0080048528.01.T02:cds;Parent=MsG0080048528.01.T02
contig347end CDS 11702 11799 11702 ID=MsG0080048528.01.T02:cds;Parent=MsG0080048528.01.T02
contig347end CDS 11889 11938 11889 ID=MsG0080048528.01.T02:cds;Parent=MsG0080048528.01.T02
contig347end CDS 12227 12322 12227 ID=MsG0080048528.01.T02:cds;Parent=MsG0080048528.01.T02
contig347end CDS 12441 12551 12441 ID=MsG0080048528.01.T02:cds;Parent=MsG0080048528.01.T02
Gene Sequence

>MsG0080048528.01.T02

ATGACCACTAGACAGAATGCAAGTTTAAGGTGTTTGCAAACCGCACATGTTCATGATTTTCTTCTAGCTATCCCTATTGATGGGTTAGGTCAGCATATGTCACCAGTAGAGTATCGTAATATGCTTAGATATCGTCTTATGATTTCACTATTTTCTATTGACGAGGTGTGTCCTGTTTATCGTAAGGCGTGCATGGATACTTTTGAAGAGCATGCAGTTCATTATAAGGAGTTTCTTGGCTTTAAGTACACACATGACTTTGTTATGGATTTCCCTTCACTGAAAATGGTTGCTCTGTTTTCTGTGCCATTGCCCATATTCAAGGTCGTTGCTGAAACTGATGCTGACTCATTCCCTTCCTTTCTTCCTAAAGACGTCAACAGAATCAAAGACCCTTTCGCTCGAACTCTCGCTACACGGATTCAAAGACTTCCCGTTTCCGTTAAGTTCTCTGAAAATCCTATCATGAGTAGTTGTGTGAAGCCACTGGTGCAGAACAAGGAAAATCCAATTGTCCTTTTACATGGTTTTGACAGCTCATGCTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTCTCGAGACATGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAGAAACTTCCTTCCTGCGATGTGGTATCAAAGCGCGAACACTTTTACCAGTTTTGGAAATCCTACATTAAAAAGCCGATGATATTGGTTGGTCCAAGCCTTGGTTCTGCTGTTGCCATCGACTTTGCAGTCAATTATCCAGAAGCTGTGGAAAAGCTTGTTTTGATTGATGCTAGTGTATATACAGAAGGGACAGGAAACCTAGCAACTTTACCTAGAGCGGCAGCTTATGCTGGGGTGAGTATTTCTCCTACTTAA

>MsG0080048528.01.T01

ATGGTTGCTCTGTTTTCTGTGCCATTGCCCATATTCAAGGTCGTTGCTGAAACTGATGCTGACTCATTCCCTTCCTTTCTTCCTAAAGACGTCAACAGAATCAAAGACCCTTTCGCTCGAACTCTCGCTACACGGATTCAAAGACTTCCCGTTTCCGTTAAGTTCTCTGAAAATCCTATCATGAGTAGTTGTGTGAAGCCACTGGTGCAGAACAAGGAAAATCCAATTGTCCTTTTACATGGTTTTGACAGCTCATGCTTAGAATGGAGATACACATATCCATTGCTTGAGGAAGCTGGTCTCGAGACATGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAGAAACTTCCTTCCTGCGATGTGGTATCAAAGCGCGAACACTTTTACCAGTTTTGGAAATCCTACATTAAAAAGCCGATGATATTGGTTGGTCCAAGCCTTGGTTCTGCTGTTGCCATCGACTTTGCAGTCAATTATCCAGAAGCTGTGGAAAAGCTTGTTTTGATTGATGCTAGTGTATATACAGAAGGGACAGGAAACCTAGCAACTTTACCTAGAGCGGCAGCTTATGCTGGGGTATATTTATTAAAGAGCGTCCCGTTACGTGTATATGCAAACTATTTGTCCTTCACCAACATATCTTTCAGTACTAGCCTTGATTGGACAAATATTGGCCGCTTGCATTGTTTATTGCCATGGTGGGAGGATGCTGCGGTTAATTTTATGATCAGTGGTGGCTACAATGTTGCTTCGCAGATAAAAATGGTAAAGCAGAAAACACTCATAATTTGGGGGGAGAATGACCGCATAATCAGCAATAAGCTTGCAGTGCAACTGCACTGTGAATTACCTGATGCAATTATACGCCAAATACCCGATTGTGGTCACCTTCCTCATGTTGAAAGACCGGATTCTGTTGTGAAACTCATAAAGGAATTTGTTCCGAAGGATACAAAGACAGTAAATCAATATGTTTCATCATTATGA

Protein sequence

>MsG0080048528.01.T02

MTTRQNASLRCLQTAHVHDFLLAIPIDGLGQHMSPVEYRNMLRYRLMISLFSIDEVCPVYRKACMDTFEEHAVHYKEFLGFKYTHDFVMDFPSLKMVALFSVPLPIFKVVAETDADSFPSFLPKDVNRIKDPFARTLATRIQRLPVSVKFSENPIMSSCVKPLVQNKENPIVLLHGFDSSCLEWRYTYPLLEEAGLETWAIDILGWGFSDLEKLPSCDVVSKREHFYQFWKSYIKKPMILVGPSLGSAVAIDFAVNYPEAVEKLVLIDASVYTEGTGNLATLPRAAAYAGVSISPT*

>MsG0080048528.01.T01

MVALFSVPLPIFKVVAETDADSFPSFLPKDVNRIKDPFARTLATRIQRLPVSVKFSENPIMSSCVKPLVQNKENPIVLLHGFDSSCLEWRYTYPLLEEAGLETWAIDILGWGFSDLEKLPSCDVVSKREHFYQFWKSYIKKPMILVGPSLGSAVAIDFAVNYPEAVEKLVLIDASVYTEGTGNLATLPRAAAYAGVYLLKSVPLRVYANYLSFTNISFSTSLDWTNIGRLHCLLPWWEDAAVNFMISGGYNVASQIKMVKQKTLIIWGENDRIISNKLAVQLHCELPDAIIRQIPDCGHLPHVERPDSVVKLIKEFVPKDTKTVNQYVSSL*