AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048198.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048198.01.T01 MTR_4g019790 98.537 205 3 0 1 205 1 205 1.98e-148 411
MsG0080048198.01.T01 MTR_7g065720 67.961 206 65 1 1 205 1 206 4.31e-100 289
MsG0080048198.01.T01 MTR_7g065290 64.878 205 72 0 1 205 1 205 2.93e-97 282
MsG0080048198.01.T01 MTR_7g065750 66.341 205 68 1 1 204 1 205 4.29e-96 279
MsG0080048198.01.T01 MTR_7g065660 62.927 205 76 0 1 205 1 205 4.62e-96 279
MsG0080048198.01.T01 MTR_7g065590 62.745 204 76 0 1 204 1 204 1.04e-95 278
MsG0080048198.01.T01 MTR_7g065600 63.415 205 75 0 1 205 1 205 2.44e-95 277
MsG0080048198.01.T01 MTR_7g065740 63.902 205 73 1 1 204 1 205 4.08e-95 276
MsG0080048198.01.T01 MTR_7g065270 61.951 205 78 0 1 205 1 205 2.12e-91 267
MsG0080048198.01.T01 MTR_4g019780 60.591 203 78 2 4 205 5 206 2.60e-89 262
MsG0080048198.01.T01 MTR_7g065265 61.463 205 79 0 1 205 1 205 3.14e-89 262
MsG0080048198.01.T01 MTR_7g065260 62.500 208 78 0 1 208 8 215 5.12e-88 259
MsG0080048198.01.T01 MTR_7g065230 60.976 205 75 1 1 205 1 200 7.62e-88 258
MsG0080048198.01.T01 MTR_7g065630 61.765 204 74 1 1 204 19 218 2.14e-86 255
MsG0080048198.01.T01 MTR_7g065640 59.024 205 66 2 1 205 1 187 1.00e-85 252
MsG0080048198.01.T01 MTR_7g065710 57.868 197 79 1 8 204 5 197 3.56e-78 234
MsG0080048198.01.T01 MTR_7g065700 61.275 204 75 1 1 204 1 200 4.79e-77 231
MsG0080048198.01.T01 MTR_7g065680 57.843 204 82 1 1 204 1 200 2.51e-72 219
MsG0080048198.01.T01 MTR_6g080440 46.766 201 105 2 6 205 2 201 1.06e-63 197
MsG0080048198.01.T01 MTR_1g090150 48.276 203 100 3 7 206 3 203 9.04e-63 194
MsG0080048198.01.T01 MTR_1g115195 48.276 203 100 3 6 204 2 203 6.44e-61 190
MsG0080048198.01.T01 MTR_8g087425 46.860 207 102 3 7 209 5 207 1.43e-60 189
MsG0080048198.01.T01 MTR_3g099757 46.377 207 107 3 1 206 1 204 1.71e-60 189
MsG0080048198.01.T01 MTR_8g087410 47.549 204 105 2 7 209 6 208 1.32e-58 184
MsG0080048198.01.T01 MTR_4g059730 45.771 201 105 2 7 204 4 203 2.67e-57 180
MsG0080048198.01.T01 MTR_5g040430 41.315 213 117 3 1 206 1 212 1.08e-56 179
MsG0080048198.01.T01 MTR_1g090070 44.554 202 109 1 6 204 8 209 7.02e-54 172
MsG0080048198.01.T01 MTR_1g090060 44.059 202 109 2 6 204 2 202 8.26e-54 172
MsG0080048198.01.T01 MTR_1g090090 43.564 202 110 2 6 204 2 202 1.17e-52 169
MsG0080048198.01.T01 MTR_1g090100 43.000 200 110 2 8 204 3 201 6.21e-51 164
MsG0080048198.01.T01 MTR_5g037380 42.718 206 110 2 7 204 5 210 3.86e-49 160
MsG0080048198.01.T01 MTR_8g061950 41.981 212 113 5 1 204 1 210 2.50e-47 155
MsG0080048198.01.T01 MTR_2g070150 42.000 200 111 4 7 204 4 200 1.27e-46 153
MsG0080048198.01.T01 MTR_2g070130 44.500 200 106 5 7 204 4 200 5.66e-46 151
MsG0080048198.01.T01 MTR_2g070200 41.089 202 115 3 7 206 4 203 3.86e-44 147
MsG0080048198.01.T01 MTR_2g070140 41.935 186 103 4 21 204 2 184 7.05e-44 145
MsG0080048198.01.T01 MTR_3g467420 39.512 205 119 4 2 204 4 205 1.87e-42 142
MsG0080048198.01.T01 MTR_2g070180 40.000 200 115 4 7 204 4 200 1.55e-41 140
MsG0080048198.01.T01 MTR_4g124130 43.979 191 99 6 5 191 2 188 1.20e-40 138
MsG0080048198.01.T01 MTR_8g056940 39.698 199 115 4 7 203 4 199 1.23e-40 138
MsG0080048198.01.T01 MTR_2g070210 41.584 202 111 5 7 204 4 202 1.48e-40 138
MsG0080048198.01.T01 MTR_2g070120 40.299 201 113 6 7 204 4 200 1.62e-40 137
MsG0080048198.01.T01 MTR_2g070060 40.000 200 115 4 7 204 4 200 5.29e-40 136
MsG0080048198.01.T01 MTR_5g076900 41.206 199 112 4 8 204 7 202 6.86e-40 136
MsG0080048198.01.T01 MTR_3g467430 37.931 203 121 4 4 204 6 205 3.95e-39 134
MsG0080048198.01.T01 MTR_2g070070 41.379 203 114 4 7 207 4 203 1.00e-38 133
MsG0080048198.01.T01 MTR_0186s0030 47.656 128 65 2 16 142 13 139 2.79e-35 122
MsG0080048198.01.T01 MTR_2g070110 41.000 200 112 5 7 204 4 199 3.47e-34 121
MsG0080048198.01.T01 MTR_2g072120 50.769 65 31 1 51 114 2 66 2.24e-17 73.9
MsG0080048198.01.T01 MTR_5g037390 39.726 73 41 1 31 100 11 83 2.62e-11 58.5
MsG0080048198.01.T01 MTR_1g067180 29.000 200 116 7 6 194 26 210 6.33e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048198.01.T01 AT3G09270 53.234 201 90 4 8 205 7 206 9.70e-75 225
MsG0080048198.01.T01 AT2G29420 49.500 200 99 2 7 205 9 207 9.15e-70 213
MsG0080048198.01.T01 AT2G29490 49.038 208 103 3 1 206 1 207 1.39e-62 194
MsG0080048198.01.T01 AT2G29480 49.761 209 98 4 1 205 1 206 1.72e-61 191
MsG0080048198.01.T01 AT2G29460 46.190 210 106 4 1 206 1 207 3.35e-58 183
MsG0080048198.01.T01 AT2G29450 46.341 205 108 2 4 206 3 207 1.36e-57 181
MsG0080048198.01.T01 AT2G29470 44.444 207 111 4 1 204 1 206 1.62e-54 174
MsG0080048198.01.T01 AT2G29440 44.175 206 111 4 1 204 1 204 1.71e-54 173
MsG0080048198.01.T01 AT1G59670 45.540 213 107 4 4 208 3 214 8.26e-53 169
MsG0080048198.01.T01 AT1G59700 46.009 213 106 5 4 208 3 214 1.78e-52 169
MsG0080048198.01.T01 AT1G10370 42.029 207 113 2 5 204 3 209 2.22e-50 163
MsG0080048198.01.T01 AT1G69920 41.951 205 111 4 8 204 35 239 4.52e-48 158
MsG0080048198.01.T01 AT1G78380 43.781 201 108 4 6 204 3 200 5.08e-47 154
MsG0080048198.01.T01 AT1G27130 39.512 205 116 3 8 204 7 211 5.37e-47 154
MsG0080048198.01.T01 AT5G62480 39.336 211 117 3 5 205 6 215 5.49e-47 155
MsG0080048198.01.T01 AT1G78340 46.243 173 90 3 7 177 4 175 1.21e-46 153
MsG0080048198.01.T01 AT1G78370 43.147 197 107 4 10 204 7 200 5.66e-46 151
MsG0080048198.01.T01 AT1G74590 39.623 212 111 4 1 201 1 206 6.00e-46 152
MsG0080048198.01.T01 AT1G69930 37.799 209 124 2 2 204 7 215 6.15e-46 152
MsG0080048198.01.T01 AT1G10360 39.024 205 118 3 7 204 5 209 1.49e-44 148
MsG0080048198.01.T01 AT1G78320 42.289 201 109 5 7 204 4 200 2.06e-44 147
MsG0080048198.01.T01 AT1G17170 43.000 200 108 5 7 204 4 199 2.75e-43 145
MsG0080048198.01.T01 AT1G53680 39.614 207 120 4 1 204 1 205 2.83e-43 145
MsG0080048198.01.T01 AT1G27140 39.320 206 116 3 8 204 7 212 8.52e-43 144
MsG0080048198.01.T01 AT1G17180 41.000 200 113 4 7 204 4 200 3.47e-42 142
MsG0080048198.01.T01 AT3G43800 38.647 207 118 6 7 207 5 208 7.21e-39 134
MsG0080048198.01.T01 AT1G78360 40.099 202 115 5 6 204 3 201 2.73e-38 132
MsG0080048198.01.T01 AT1G17190 41.969 193 105 5 1 191 1 188 1.78e-37 130
MsG0080048198.01.T01 AT1G78320 35.644 202 98 5 7 206 4 175 4.75e-29 107
MsG0080048198.01.T01 AT5G62480 30.952 210 110 3 5 205 6 189 1.41e-28 107
MsG0080048198.01.T01 AT5G62480 30.952 210 109 3 5 205 6 188 2.66e-28 106
MsG0080048198.01.T01 AT2G02390 26.866 201 128 5 16 204 17 210 8.63e-11 59.7

Find 66 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTCCTACTTAGCTTTC+TGG 0.061163 contig240end:-210477 MsG0080048198.01.T01:CDS
AGTGAACATTGCTTTATTTC+TGG 0.116991 contig240end:+210218 None:intergenic
TCTAATGATGAGAATAATTT+TGG 0.170684 contig240end:-210066 MsG0080048198.01.T01:three_prime_UTR
GTTCATTCTCAAGAAATTCT+AGG 0.255826 contig240end:+210548 None:intergenic
TTGAACTTCTCCTTGATCTT+TGG 0.266733 contig240end:+211354 None:intergenic
CAAAATGTGGATGAGAATTT+CGG 0.268770 contig240end:+211410 None:intergenic
GAACTCAAGCACAAATTCTT+TGG 0.284917 contig240end:-210529 MsG0080048198.01.T01:CDS
ATCGCTACATATCGAGATTT+GGG 0.287967 contig240end:+210338 None:intergenic
AGAAAGCCTTGGCTCGATTT+TGG 0.296277 contig240end:-211081 MsG0080048198.01.T01:CDS
TTGGATTAAGAGAGATAAAT+AGG 0.318597 contig240end:-210259 MsG0080048198.01.T01:three_prime_UTR
TAAGGTTGTTGAGGGAAAAT+AGG 0.325386 contig240end:+211106 None:intergenic
CAGGCACCTTCTTGTGAATA+GGG 0.332659 contig240end:+211206 None:intergenic
GTGAACATTGCTTTATTTCT+GGG 0.335093 contig240end:+210219 None:intergenic
AATCGCTACATATCGAGATT+TGG 0.342708 contig240end:+210337 None:intergenic
CGAGCCAAGGCTTTCTCATA+AGG 0.351441 contig240end:+211088 None:intergenic
AATTTCCTAAGCTCTATAAA+TGG 0.358102 contig240end:-210405 MsG0080048198.01.T01:CDS
CAAGGAGAAGTTCAATTGTT+AGG 0.359110 contig240end:-211346 MsG0080048198.01.T01:CDS
ACAGGCACCTTCTTGTGAAT+AGG 0.360494 contig240end:+211205 None:intergenic
ATTTGCACCCTTCGAACAAA+TGG 0.368308 contig240end:+211310 None:intergenic
GGGAGATTCTCTTTCACAAT+AGG 0.380629 contig240end:+210361 None:intergenic
CTTACATTGAAGAAAATCTA+AGG 0.391102 contig240end:-211258 MsG0080048198.01.T01:CDS
CATGCAGCCTTTGATATTGC+TGG 0.393495 contig240end:+210622 None:intergenic
ATGTTTCATCAATGTATTCA+AGG 0.424371 contig240end:+211140 None:intergenic
AGAATATCTAAACTTTGAAA+TGG 0.426500 contig240end:-211377 MsG0080048198.01.T01:exon
CTTTCTCATAAGGTTGTTGA+GGG 0.434221 contig240end:+211098 None:intergenic
CAAATTGCTCTAAAACTAAA+GGG 0.440385 contig240end:-211292 MsG0080048198.01.T01:CDS
GCAAATTGCTCTAAAACTAA+AGG 0.446586 contig240end:-211293 MsG0080048198.01.T01:CDS
GATGAGAATTTCGGTTCAAA+CGG 0.451991 contig240end:+211419 None:intergenic
GAAGTTCAATTGTTAGGTGT+AGG 0.453999 contig240end:-211340 MsG0080048198.01.T01:CDS
TGACTCCATTTATAGAGCTT+AGG 0.457524 contig240end:+210400 None:intergenic
TTCATTCTCAAGAAATTCTA+GGG 0.459545 contig240end:+210549 None:intergenic
TGCAGCATCACTCCTCAAAT+CGG 0.462163 contig240end:+210295 None:intergenic
CTTCGAAATAGACCGATTTG+AGG 0.462578 contig240end:-210307 MsG0080048198.01.T01:three_prime_UTR
GTTCAATTGTTAGGTGTAGG+AGG 0.480588 contig240end:-211337 MsG0080048198.01.T01:CDS
ATGAGAATTTCGGTTCAAAC+GGG 0.486751 contig240end:+211420 None:intergenic
TCTAAGTTCTTCACAAAATG+TGG 0.487003 contig240end:+211397 None:intergenic
TTTGAAATGGCCAAAGATCA+AGG 0.500048 contig240end:-211364 MsG0080048198.01.T01:exon
AGGAAGCCAGAAAGCTAAGT+AGG 0.500826 contig240end:+210471 None:intergenic
TTTGCACCCTTCGAACAAAT+GGG 0.505097 contig240end:+211311 None:intergenic
TTATTATCTTAATGATTGAA+AGG 0.517185 contig240end:-210090 MsG0080048198.01.T01:three_prime_UTR
GATCACAAGGGACTCAGCTA+AGG 0.517350 contig240end:+211162 None:intergenic
AACAAAGAAGAACGTGAGAA+AGG 0.523741 contig240end:-210592 MsG0080048198.01.T01:CDS
GCTTTCTCATAAGGTTGTTG+AGG 0.531026 contig240end:+211097 None:intergenic
CTCAAGCACAAATTCTTTGG+TGG 0.534226 contig240end:-210526 MsG0080048198.01.T01:CDS
CTGTGATTGAAGAAGCTGTA+GGG 0.541030 contig240end:-210450 MsG0080048198.01.T01:CDS
CAGCCTTTGATATTGCTGGC+AGG 0.552662 contig240end:+210626 None:intergenic
GAGGAAGCCCATTTGTTCGA+AGG 0.559814 contig240end:-211318 MsG0080048198.01.T01:CDS
CAATGTATTCAAGGATCACA+AGG 0.561254 contig240end:+211149 None:intergenic
GTCGAGGTTCATTGATGACA+AGG 0.566263 contig240end:-211059 MsG0080048198.01.T01:intron
GCTGCATGCTGCAGAGTCGT+TGG 0.569191 contig240end:-210278 MsG0080048198.01.T01:three_prime_UTR
TTGAATACATTGATGAAACA+TGG 0.571451 contig240end:-211138 MsG0080048198.01.T01:CDS
AGGAAGCCCATTTGTTCGAA+GGG 0.574450 contig240end:-211317 MsG0080048198.01.T01:CDS
ACAACCTTATGAGAAAGCCT+TGG 0.593342 contig240end:-211092 MsG0080048198.01.T01:CDS
CCTGTGATTGAAGAAGCTGT+AGG 0.598472 contig240end:-210451 MsG0080048198.01.T01:CDS
ATCACAAGGGACTCAGCTAA+GGG 0.601842 contig240end:+211163 None:intergenic
CAGCAATATCAAAGGCTGCA+TGG 0.606136 contig240end:-210621 MsG0080048198.01.T01:CDS
CCTACAGCTTCTTCAATCAC+AGG 0.610321 contig240end:+210451 None:intergenic
GTATAACCCTATTCACAAGA+AGG 0.611526 contig240end:-211212 MsG0080048198.01.T01:CDS
TGAATACATTGATGAAACAT+GGG 0.611722 contig240end:-211137 MsG0080048198.01.T01:CDS
TGGAGAAAACATTAGCATTG+TGG 0.621375 contig240end:-210506 MsG0080048198.01.T01:CDS
TCGCTACATATCGAGATTTG+GGG 0.623427 contig240end:+210339 None:intergenic
GATCCTGCCAGCAATATCAA+AGG 0.632199 contig240end:-210629 MsG0080048198.01.T01:CDS
CCTCGACCAAAATCGAGCCA+AGG 0.642750 contig240end:+211075 None:intergenic
CGCTACATATCGAGATTTGG+GGG 0.692985 contig240end:+210340 None:intergenic
GCTACATATCGAGATTTGGG+GGG 0.731660 contig240end:+210341 None:intergenic
AATGTATTCAAGGATCACAA+GGG 0.737483 contig240end:+211150 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCACATTATTTTTAAA+AGG - contig240end:210631-210650 MsG0080048198.01.T01:CDS 10.0%
!!! TAAAAATAATGTGAAATTTT+TGG + contig240end:210629-210648 None:intergenic 10.0%
!! AATGAAATATATTATGATGA+TGG + contig240end:210766-210785 None:intergenic 15.0%
!! TTATTATCTTAATGATTGAA+AGG - contig240end:211421-211440 MsG0080048198.01.T01:five_prime_UTR 15.0%
!!! TGTTGTTTCATAATATTATT+AGG + contig240end:210838-210857 None:intergenic 15.0%
!!! TTTTTTGTTGAAAAGATATT+AGG + contig240end:210802-210821 None:intergenic 15.0%
!!! AGAATATCTAAACTTTGAAA+TGG - contig240end:210134-210153 MsG0080048198.01.T01:three_prime_UTR 20.0%
!!! TCTAATGATGAGAATAATTT+TGG - contig240end:211445-211464 MsG0080048198.01.T01:five_prime_UTR 20.0%
! AATTTCCTAAGCTCTATAAA+TGG - contig240end:211106-211125 MsG0080048198.01.T01:CDS 25.0%
! ATGTTTCATCAATGTATTCA+AGG + contig240end:210374-210393 None:intergenic 25.0%
! CTTACATTGAAGAAAATCTA+AGG - contig240end:210253-210272 MsG0080048198.01.T01:three_prime_UTR 25.0%
! TGAATACATTGATGAAACAT+GGG - contig240end:210374-210393 MsG0080048198.01.T01:CDS 25.0%
! TGTAATTCATCAATCATCAT+AGG + contig240end:210742-210761 None:intergenic 25.0%
! TTCATTCTCAAGAAATTCTA+GGG + contig240end:210965-210984 None:intergenic 25.0%
! TTGAATACATTGATGAAACA+TGG - contig240end:210373-210392 MsG0080048198.01.T01:CDS 25.0%
! TTGGATTAAGAGAGATAAAT+AGG - contig240end:211252-211271 MsG0080048198.01.T01:CDS 25.0%
!!! CAAATTGCTCTAAAACTAAA+GGG - contig240end:210219-210238 MsG0080048198.01.T01:three_prime_UTR 25.0%
AATGTATTCAAGGATCACAA+GGG + contig240end:210364-210383 None:intergenic 30.0%
CAAAATGTGGATGAGAATTT+CGG + contig240end:210104-210123 None:intergenic 30.0%
GTTCATTCTCAAGAAATTCT+AGG + contig240end:210966-210985 None:intergenic 30.0%
TCTAAGTTCTTCACAAAATG+TGG + contig240end:210117-210136 None:intergenic 30.0%
TTCATGATGTTTCATACACA+GGG + contig240end:210702-210721 None:intergenic 30.0%
TTTCATGATGTTTCATACAC+AGG + contig240end:210703-210722 None:intergenic 30.0%
TTTCCATTATGGACAAAAAC+AGG + contig240end:210327-210346 None:intergenic 30.0%
!! AGTGAACATTGCTTTATTTC+TGG + contig240end:211296-211315 None:intergenic 30.0%
!! GCAAATTGCTCTAAAACTAA+AGG - contig240end:210218-210237 MsG0080048198.01.T01:three_prime_UTR 30.0%
!! GTGAACATTGCTTTATTTCT+GGG + contig240end:211295-211314 None:intergenic 30.0%
!!! TTCAAACGGGTTTTATTCTT+TGG + contig240end:210081-210100 None:intergenic 30.0%
AACAAAGAAGAACGTGAGAA+AGG - contig240end:210919-210938 MsG0080048198.01.T01:intron 35.0%
AATCGCTACATATCGAGATT+TGG + contig240end:211177-211196 None:intergenic 35.0%
ATCGCTACATATCGAGATTT+GGG + contig240end:211176-211195 None:intergenic 35.0%
ATGAGAATTTCGGTTCAAAC+GGG + contig240end:210094-210113 None:intergenic 35.0%
CAAGGAGAAGTTCAATTGTT+AGG - contig240end:210165-210184 MsG0080048198.01.T01:three_prime_UTR 35.0%
CAATGTATTCAAGGATCACA+AGG + contig240end:210365-210384 None:intergenic 35.0%
CTTTAGGTCTTAGCATACAT+TGG - contig240end:210671-210690 MsG0080048198.01.T01:intron 35.0%
CTTTCTCATAAGGTTGTTGA+GGG + contig240end:210416-210435 None:intergenic 35.0%
GAACTCAAGCACAAATTCTT+TGG - contig240end:210982-211001 MsG0080048198.01.T01:intron 35.0%
GAAGTTCAATTGTTAGGTGT+AGG - contig240end:210171-210190 MsG0080048198.01.T01:three_prime_UTR 35.0%
GATGAGAATTTCGGTTCAAA+CGG + contig240end:210095-210114 None:intergenic 35.0%
GTATAACCCTATTCACAAGA+AGG - contig240end:210299-210318 MsG0080048198.01.T01:three_prime_UTR 35.0%
TAAGGTTGTTGAGGGAAAAT+AGG + contig240end:210408-210427 None:intergenic 35.0%
TGACTCCATTTATAGAGCTT+AGG + contig240end:211114-211133 None:intergenic 35.0%
TGGAGAAAACATTAGCATTG+TGG - contig240end:211005-211024 MsG0080048198.01.T01:intron 35.0%
TTGAACTTCTCCTTGATCTT+TGG + contig240end:210160-210179 None:intergenic 35.0%
! CTCGTCTAAATTTTCGCTTT+AGG - contig240end:210655-210674 MsG0080048198.01.T01:intron 35.0%
! TTTGAAATGGCCAAAGATCA+AGG - contig240end:210147-210166 MsG0080048198.01.T01:three_prime_UTR 35.0%
!!! ACGGGTTTTATTCTTTGGTT+TGG + contig240end:210076-210095 None:intergenic 35.0%
!!! CGGGTTTTATTCTTTGGTTT+GGG + contig240end:210075-210094 None:intergenic 35.0%
ACAACCTTATGAGAAAGCCT+TGG - contig240end:210419-210438 MsG0080048198.01.T01:CDS 40.0%
ACGATAAACCACTATGACTC+TGG + contig240end:210537-210556 None:intergenic 40.0%
ATTTGCACCCTTCGAACAAA+TGG + contig240end:210204-210223 None:intergenic 40.0%
CTCAAGCACAAATTCTTTGG+TGG - contig240end:210985-211004 MsG0080048198.01.T01:intron 40.0%
CTGTGATTGAAGAAGCTGTA+GGG - contig240end:211061-211080 MsG0080048198.01.T01:CDS 40.0%
GCTTTCTCATAAGGTTGTTG+AGG + contig240end:210417-210436 None:intergenic 40.0%
GGGAGATTCTCTTTCACAAT+AGG + contig240end:211153-211172 None:intergenic 40.0%
GTTCAATTGTTAGGTGTAGG+AGG - contig240end:210174-210193 MsG0080048198.01.T01:three_prime_UTR 40.0%
TCGCTACATATCGAGATTTG+GGG + contig240end:211175-211194 None:intergenic 40.0%
TGTATCTACCAGAGTCATAG+TGG - contig240end:210526-210545 MsG0080048198.01.T01:CDS 40.0%
TTTGCACCCTTCGAACAAAT+GGG + contig240end:210203-210222 None:intergenic 40.0%
! CAGCTAAGGGTTTTCCATTA+TGG + contig240end:210338-210357 None:intergenic 40.0%
!! CTTCGAAATAGACCGATTTG+AGG - contig240end:211204-211223 MsG0080048198.01.T01:CDS 40.0%
!!! GTGCCTGTTTTTGTCCATAA+TGG - contig240end:210321-210340 MsG0080048198.01.T01:three_prime_UTR 40.0%
ACAGGCACCTTCTTGTGAAT+AGG + contig240end:210309-210328 None:intergenic 45.0%
AGGAAGCCAGAAAGCTAAGT+AGG + contig240end:211043-211062 None:intergenic 45.0%
AGGAAGCCCATTTGTTCGAA+GGG - contig240end:210194-210213 MsG0080048198.01.T01:three_prime_UTR 45.0%
ATCACAAGGGACTCAGCTAA+GGG + contig240end:210351-210370 None:intergenic 45.0%
CAGCAATATCAAAGGCTGCA+TGG - contig240end:210890-210909 MsG0080048198.01.T01:intron 45.0%
CAGGCACCTTCTTGTGAATA+GGG + contig240end:210308-210327 None:intergenic 45.0%
CATGCAGCCTTTGATATTGC+TGG + contig240end:210892-210911 None:intergenic 45.0%
CCTACAGCTTCTTCAATCAC+AGG + contig240end:211063-211082 None:intergenic 45.0%
CCTGTGATTGAAGAAGCTGT+AGG - contig240end:211060-211079 MsG0080048198.01.T01:CDS 45.0%
CGCTACATATCGAGATTTGG+GGG + contig240end:211174-211193 None:intergenic 45.0%
GATCCTGCCAGCAATATCAA+AGG - contig240end:210882-210901 MsG0080048198.01.T01:intron 45.0%
GCTACATATCGAGATTTGGG+GGG + contig240end:211173-211192 None:intergenic 45.0%
GGTCTTAGCATACATTGGAC+CGG - contig240end:210676-210695 MsG0080048198.01.T01:intron 45.0%
TGATGTTTCATACACAGGGC+CGG + contig240end:210698-210717 None:intergenic 45.0%
TGCAGCATCACTCCTCAAAT+CGG + contig240end:211219-211238 None:intergenic 45.0%
! CTGCTTCCTACTTAGCTTTC+TGG - contig240end:211034-211053 MsG0080048198.01.T01:intron 45.0%
! GTCGAGGTTCATTGATGACA+AGG - contig240end:210452-210471 MsG0080048198.01.T01:CDS 45.0%
!! AGAAAGCCTTGGCTCGATTT+TGG - contig240end:210430-210449 MsG0080048198.01.T01:CDS 45.0%
CAGCCTTTGATATTGCTGGC+AGG + contig240end:210888-210907 None:intergenic 50.0%
CGAGCCAAGGCTTTCTCATA+AGG + contig240end:210426-210445 None:intergenic 50.0%
GAGGAAGCCCATTTGTTCGA+AGG - contig240end:210193-210212 MsG0080048198.01.T01:three_prime_UTR 50.0%
GATCACAAGGGACTCAGCTA+AGG + contig240end:210352-210371 None:intergenic 50.0%
CCTCGACCAAAATCGAGCCA+AGG + contig240end:210439-210458 None:intergenic 55.0%
!! CCTTGGCTCGATTTTGGTCG+AGG - contig240end:210436-210455 MsG0080048198.01.T01:CDS 55.0%
GCTGCATGCTGCAGAGTCGT+TGG - contig240end:211233-211252 MsG0080048198.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
contig240end gene 210066 211467 210066 ID=MsG0080048198.01;Name=MsG0080048198.01
contig240end mRNA 210066 211467 210066 ID=MsG0080048198.01.T01;Parent=MsG0080048198.01;Name=MsG0080048198.01.T01;_AED=0.16;_eAED=0.16;_QI=87|1|1|1|1|1|2|276|209
contig240end exon 210066 210650 210066 ID=MsG0080048198.01.T01:exon:8595;Parent=MsG0080048198.01.T01
contig240end exon 211060 211467 211060 ID=MsG0080048198.01.T01:exon:8594;Parent=MsG0080048198.01.T01
contig240end five_prime_UTR 211381 211467 211381 ID=MsG0080048198.01.T01:five_prime_utr;Parent=MsG0080048198.01.T01
contig240end CDS 211060 211380 211060 ID=MsG0080048198.01.T01:cds;Parent=MsG0080048198.01.T01
contig240end CDS 210342 210650 210342 ID=MsG0080048198.01.T01:cds;Parent=MsG0080048198.01.T01
contig240end three_prime_UTR 210066 210341 210066 ID=MsG0080048198.01.T01:three_prime_utr;Parent=MsG0080048198.01.T01
Gene Sequence

>MsG0080048198.01.T01

ATGGCCAAAGATCAAGGAGAAGTTCAATTGTTAGGTGTAGGAGGAAGCCCATTTGTTCGAAGGGTGCAAATTGCTCTAAAACTAAAGGGTATTGAATACACTTACATTGAAGAAAATCTAAGGAACAAAAGTGATCTTCTTCTTAAGTATAACCCTATTCACAAGAAGGTGCCTGTTTTTGTCCATAATGGAAAACCCTTAGCTGAGTCCCTTGTGATCCTTGAATACATTGATGAAACATGGGAGAATTATCCTATTTTCCCTCAACAACCTTATGAGAAAGCCTTGGCTCGATTTTGGTCGAGGTTCATTGATGACAAGATCCTGCCAGCAATATCAAAGGCTGCATGGACAGTGAACAAAGAAGAACGTGAGAAAGGCATTGAAGAATCATTGCAAGCCCTAGAATTTCTTGAGAATGAACTCAAGCACAAATTCTTTGGTGGAGAAAACATTAGCATTGTGGACATTGCTGCTTCCTACTTAGCTTTCTGGCTTCCTGTGATTGAAGAAGCTGTAGGGTTGAAGATTCTTAGCAGTGACAAATTTCCTAAGCTCTATAAATGGAGTCAAGAATTCAACAATCATCCTATTGTGAAAGAGAATCTCCCCCCAAATCTCGATATGTAG

Protein sequence

>MsG0080048198.01.T01

MAKDQGEVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKPLAESLVILEYIDETWENYPIFPQQPYEKALARFWSRFIDDKILPAISKAAWTVNKEEREKGIEESLQALEFLENELKHKFFGGENISIVDIAASYLAFWLPVIEEAVGLKILSSDKFPKLYKWSQEFNNHPIVKENLPPNLDM*