AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048885.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048885.01.T01 MTR_4g085890 99.275 552 4 0 1 552 1 552 0.0 1133
MsG0080048885.01.T01 MTR_4g085890 99.772 438 1 0 115 552 1 438 0.0 904
MsG0080048885.01.T01 MTR_3g011860 56.938 209 36 2 200 408 86 240 3.22e-64 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048885.01.T01 AT4G34030 78.755 546 104 1 19 552 42 587 0.0 885

Find 167 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTAAATACACCATATT+TGG 0.155301 contig510end:+10210 MsG0080048885.01.T01:intergenic
GAAAACATGTTTAAACTAAT+TGG 0.177202 contig510end:-14095 MsG0080048885.01.T01:exon
GCAAATGACCCTACTGTTAA+AGG 0.206882 contig510end:-12760 MsG0080048885.01.T01:CDS
CCTTCTGGTGGGGTTGTGAC+TGG 0.207802 contig510end:-12820 MsG0080048885.01.T01:CDS
TTCTCTTCTTGACAGTAAAT+TGG 0.223941 contig510end:+14049 MsG0080048885.01.T01:intergenic
AGCCTAACACCAATGCAATT+TGG 0.229338 contig510end:+12542 MsG0080048885.01.T01:intergenic
GGACAGCCTGTAGGAATTAT+TGG 0.229562 contig510end:-11561 MsG0080048885.01.T01:CDS
TTTCCGGATAAGGAAAATTT+TGG 0.235219 contig510end:-12610 MsG0080048885.01.T01:CDS
CAAGCAGGCTGATGTCTTTC+CGG 0.257827 contig510end:-12626 MsG0080048885.01.T01:CDS
AGAAGTCTCTGCGGAGGATT+TGG 0.263617 contig510end:-12237 MsG0080048885.01.T01:CDS
GCCTAACACCAATGCAATTT+GGG 0.272182 contig510end:+12543 MsG0080048885.01.T01:intergenic
TATGAAGAGCCTTTGCCTTC+TGG 0.275232 contig510end:-12835 MsG0080048885.01.T01:CDS
AGATGTTTCTTAACTGTAAT+AGG 0.281386 contig510end:+12724 MsG0080048885.01.T01:intergenic
GCGACAGAAAATACCAAATA+TGG 0.306791 contig510end:-10223 MsG0080048885.01.T01:CDS
TGAGTGAATATGAAGCTTGC+AGG 0.334512 contig510end:-12868 MsG0080048885.01.T01:intron
AAATACAAGTTATGAGTATA+AGG 0.335328 contig510end:-11973 MsG0080048885.01.T01:CDS
TTACTCAACGGCGAGGCTTT+GGG 0.338797 contig510end:-10317 MsG0080048885.01.T01:CDS
ATTACTCAACGGCGAGGCTT+TGG 0.339622 contig510end:-10318 MsG0080048885.01.T01:CDS
AGCCTCGCCGTTGAGTAATA+AGG 0.347863 contig510end:+10322 MsG0080048885.01.T01:intergenic
ACAAATCTACATCAGACTTT+AGG 0.354274 contig510end:+10140 MsG0080048885.01.T01:intergenic
CCCCAAATTGCATTGGTGTT+AGG 0.364602 contig510end:-12544 MsG0080048885.01.T01:CDS
TCAGAACATCACCGGATTCA+TGG 0.364972 contig510end:-11448 MsG0080048885.01.T01:intron
GTGTTAGGCTCTTGCACTGC+TGG 0.368017 contig510end:-12529 MsG0080048885.01.T01:CDS
GTCCGAACTTCATGTTCCTT+TGG 0.370909 contig510end:-10692 MsG0080048885.01.T01:CDS
TTCTTTCCTTGAGCTTTCAC+AGG 0.384052 contig510end:-13853 MsG0080048885.01.T01:intron
CATGTTCATAAGGTTCTTGC+TGG 0.385373 contig510end:-13963 MsG0080048885.01.T01:CDS
TGTTTGGGTGCCCTTCCTAA+TGG 0.386494 contig510end:-14023 MsG0080048885.01.T01:CDS
TATGTGCAGACTCTTGTAAC+AGG 0.393966 contig510end:-11600 MsG0080048885.01.T01:intron
CTTCTGGTGGGGTTGTGACT+GGG 0.408731 contig510end:-12819 MsG0080048885.01.T01:CDS
TGTTGCAAGTTGACATGATC+AGG 0.408834 contig510end:+10034 MsG0080048885.01.T01:intergenic
GGCTGATGTCTTTCCGGATA+AGG 0.409916 contig510end:-12620 MsG0080048885.01.T01:CDS
TGGTGCTTTCCTTCCCAAGC+AGG 0.414000 contig510end:-12641 MsG0080048885.01.T01:CDS
AGACGATCAATTCTTTCTCT+TGG 0.414876 contig510end:+13891 MsG0080048885.01.T01:intergenic
CAAATGACCCTACTGTTAAA+GGG 0.415811 contig510end:-12759 MsG0080048885.01.T01:CDS
GCAGTACACTGCAAGACTTC+GGG 0.417609 contig510end:-12206 MsG0080048885.01.T01:CDS
GAAGTCTCTGCGGAGGATTT+GGG 0.419494 contig510end:-12236 MsG0080048885.01.T01:CDS
TGTTCCATAGCTCCGCCATT+AGG 0.421284 contig510end:+14008 MsG0080048885.01.T01:intergenic
ATAATTGTTGGTGGAAGCTT+TGG 0.424489 contig510end:-10750 MsG0080048885.01.T01:CDS
GAATTTCATGCTCTTGCACT+TGG 0.426359 contig510end:-12056 MsG0080048885.01.T01:CDS
GAGAGGTGGGAGAGGTTGAA+TGG 0.429245 contig510end:-10106 MsG0080048885.01.T01:three_prime_UTR
TTTAATTCATACCATGAATC+CGG 0.429251 contig510end:+11437 MsG0080048885.01.T01:intergenic
ATTGATCGTCTTCTTGATCC+TGG 0.432262 contig510end:-13879 MsG0080048885.01.T01:CDS
GATGAATTCAAGAAACTGTA+TGG 0.435673 contig510end:-11843 MsG0080048885.01.T01:CDS
GTCAAGAATTTGCATATGGC+TGG 0.436817 contig510end:-12023 MsG0080048885.01.T01:CDS
CGGAAAGACATCAGCCTGCT+TGG 0.437839 contig510end:+12627 MsG0080048885.01.T01:intergenic
ATCTGTGATGGGTGGTGCTC+AGG 0.438212 contig510end:-10655 MsG0080048885.01.T01:intron
GAACATGAAGTTCGGACTAT+AGG 0.440234 contig510end:+10698 MsG0080048885.01.T01:intergenic
ACCTTTCTTCTTCTAAGTAA+AGG 0.442877 contig510end:+14138 MsG0080048885.01.T01:intergenic
CTTGACCATCACACTTTCAT+CGG 0.444386 contig510end:+12483 MsG0080048885.01.T01:intergenic
GCCTTTACTTAGAAGAAGAA+AGG 0.447297 contig510end:-14139 MsG0080048885.01.T01:five_prime_UTR
CTGATGTAGATTTGTTTACA+TGG 0.448736 contig510end:-10132 MsG0080048885.01.T01:three_prime_UTR
CATAAGGTTCTTGCTGGTGG+TGG 0.450736 contig510end:-13957 MsG0080048885.01.T01:CDS
GAACCTTATGAACATGAGAT+TGG 0.456065 contig510end:+13970 MsG0080048885.01.T01:intergenic
GGTGGGGTTGTGACTGGGAT+CGG 0.456548 contig510end:-12814 MsG0080048885.01.T01:CDS
CCTAAAATCACTATAATTGT+TGG 0.457203 contig510end:-10762 MsG0080048885.01.T01:CDS
TCAATGAATCGGCTCTGAAA+GGG 0.459441 contig510end:-11521 MsG0080048885.01.T01:CDS
ACGGCGAGGCTTTGGGATGA+TGG 0.460924 contig510end:-10310 MsG0080048885.01.T01:CDS
ACTCCAATCTCATGTTCATA+AGG 0.464137 contig510end:-13973 MsG0080048885.01.T01:CDS
GGGAGAGATGTCTCGACAAA+TGG 0.464683 contig510end:-12002 MsG0080048885.01.T01:CDS
GTCTTTCTTCAGAACATCAC+CGG 0.466141 contig510end:-11456 MsG0080048885.01.T01:CDS
CAATGCGAGAAATCACTTCT+CGG 0.469080 contig510end:+11883 MsG0080048885.01.T01:intergenic
ATCGGCCATAGCAGGTATAT+AGG 0.469640 contig510end:+12501 MsG0080048885.01.T01:intergenic
GTCAAGAAGAGAATTGTGTT+TGG 0.469973 contig510end:-14039 MsG0080048885.01.T01:CDS
ATCACAGATATTCTAGCATT+AGG 0.470037 contig510end:+10669 MsG0080048885.01.T01:intergenic
TGGCCGACTTTGTATGTTTG+TGG 0.474171 contig510end:-12782 MsG0080048885.01.T01:CDS
TTGTTTCCAATAATTCCTAC+AGG 0.474318 contig510end:+11555 MsG0080048885.01.T01:intergenic
TTGACATTATAGGCTGCTAC+TGG 0.479167 contig510end:-12263 MsG0080048885.01.T01:intron
CATGGGAAGAGAGGTGGGAG+AGG 0.485320 contig510end:-10114 MsG0080048885.01.T01:three_prime_UTR
GTTTACATGGGAAGAGAGGT+GGG 0.489753 contig510end:-10119 MsG0080048885.01.T01:three_prime_UTR
GGAAAGACATCAGCCTGCTT+GGG 0.489867 contig510end:+12628 MsG0080048885.01.T01:intergenic
GATAATATTCATCAGGCTGC+TGG 0.490449 contig510end:-10564 MsG0080048885.01.T01:intron
GCAAATGGCATAGCAAAGTC+AGG 0.491642 contig510end:-11042 MsG0080048885.01.T01:CDS
GCTGATACAAGAAAAGTGAT+TGG 0.495102 contig510end:-10274 MsG0080048885.01.T01:CDS
TGCAGTACACTGCAAGACTT+CGG 0.495679 contig510end:-12207 MsG0080048885.01.T01:CDS
GTGATTTCTCGCATTGTTGA+CGG 0.495714 contig510end:-11876 MsG0080048885.01.T01:CDS
ATACAAAGTCGGCCATGCAC+TGG 0.497636 contig510end:+12790 MsG0080048885.01.T01:intergenic
CATCGTCAAGAATTTGCATA+TGG 0.498312 contig510end:-12027 MsG0080048885.01.T01:CDS
CTTTGCTATGCCATTTGCCT+CGG 0.499152 contig510end:+11047 MsG0080048885.01.T01:intergenic
GAAGAGCCTTTGCCTTCTGG+TGG 0.501882 contig510end:-12832 MsG0080048885.01.T01:CDS
ATTTGTTTACATGGGAAGAG+AGG 0.504374 contig510end:-10123 MsG0080048885.01.T01:three_prime_UTR
AAGAGCCTTTGCCTTCTGGT+GGG 0.506082 contig510end:-12831 MsG0080048885.01.T01:CDS
TGTTTACATGGGAAGAGAGG+TGG 0.506141 contig510end:-10120 MsG0080048885.01.T01:three_prime_UTR
GGCTCAAAATCCGAGGCAAA+TGG 0.507106 contig510end:-11057 MsG0080048885.01.T01:CDS
TCAAGAAGAGAATTGTGTTT+GGG 0.509555 contig510end:-14038 MsG0080048885.01.T01:CDS
TCTTCTTGACAGTAAATTGG+AGG 0.512701 contig510end:+14052 MsG0080048885.01.T01:intergenic
CCTTCCTAATGGCGGAGCTA+TGG 0.518394 contig510end:-14012 MsG0080048885.01.T01:CDS
TTCAATGAATCGGCTCTGAA+AGG 0.519323 contig510end:-11522 MsG0080048885.01.T01:CDS
TAAGAAACATCTCAGAGCAC+AGG 0.521326 contig510end:-12713 MsG0080048885.01.T01:CDS
GGCCAAAGGAACATGAAGTT+CGG 0.521966 contig510end:+10690 MsG0080048885.01.T01:intergenic
TTCATGCTCTTGCACTTGGG+AGG 0.526100 contig510end:-12052 MsG0080048885.01.T01:CDS
AAAATCACTATAATTGTTGG+TGG 0.528181 contig510end:-10759 MsG0080048885.01.T01:CDS
CCATAGCTCCGCCATTAGGA+AGG 0.529576 contig510end:+14012 MsG0080048885.01.T01:intergenic
AGACATCAGCCTGCTTGGGA+AGG 0.531693 contig510end:+12632 MsG0080048885.01.T01:intergenic
GTTGGTGGAAGCTTTGGTGC+TGG 0.534371 contig510end:-10744 MsG0080048885.01.T01:CDS
AGTGTGATGGTCAAGGGAAA+TGG 0.534494 contig510end:-12475 MsG0080048885.01.T01:CDS
TACTCAACGTAACATTCCCT+TGG 0.534828 contig510end:-11478 MsG0080048885.01.T01:CDS
ATCCGATAGACATACTTAGC+TGG 0.539877 contig510end:-14208 None:intergenic
GTTGAGGCGTATGAGAGAGA+AGG 0.540040 contig510end:-10349 MsG0080048885.01.T01:CDS
ACAGTGGAACAAGGAAGAAG+AGG 0.540270 contig510end:-10392 MsG0080048885.01.T01:intron
AGAGCCTTTGCCTTCTGGTG+GGG 0.540577 contig510end:-12830 MsG0080048885.01.T01:CDS
GTGGACCCGAAGCTGTGAAA+AGG 0.541444 contig510end:-13938 MsG0080048885.01.T01:CDS
GTTCTGTCTCAAATAGAGAA+AGG 0.541605 contig510end:-10540 MsG0080048885.01.T01:CDS
TCATGCTCTTGCACTTGGGA+GGG 0.542037 contig510end:-12051 MsG0080048885.01.T01:CDS
AGGGATTCCCCAAATTGCAT+TGG 0.545998 contig510end:-12551 MsG0080048885.01.T01:CDS
CAGGCTATAATGTCTGCTCA+AGG 0.547634 contig510end:-12571 MsG0080048885.01.T01:CDS
ACTGGGATCGGTCCAGTGCA+TGG 0.555718 contig510end:-12802 MsG0080048885.01.T01:CDS
AACTGCTGCTTAAGATCGGT+AGG 0.556025 contig510end:+11912 MsG0080048885.01.T01:intergenic
TGGTAGAATATTCTATAACC+AGG 0.556699 contig510end:-12590 MsG0080048885.01.T01:CDS
GTAGGAATTATTGGAAACAA+TGG 0.557477 contig510end:-11552 MsG0080048885.01.T01:CDS
ATCAAACTGCTGCTTAAGAT+CGG 0.557686 contig510end:+11908 MsG0080048885.01.T01:intergenic
AGTTCATTGACATCATATAG+TGG 0.558008 contig510end:+11948 MsG0080048885.01.T01:intergenic
TAATGCTAGAATATCTGTGA+TGG 0.558539 contig510end:-10667 MsG0080048885.01.T01:CDS
CTTCTTGACAGTAAATTGGA+GGG 0.564436 contig510end:+14053 MsG0080048885.01.T01:intergenic
AATTTCATGCTCTTGCACTT+GGG 0.567442 contig510end:-12055 MsG0080048885.01.T01:CDS
ACACTTTCATCGGCCATAGC+AGG 0.567737 contig510end:+12493 MsG0080048885.01.T01:intergenic
TAAGAACCTGTGAAAGCTCA+AGG 0.569308 contig510end:+13847 MsG0080048885.01.T01:intergenic
TTAGGCTCTTGCACTGCTGG+TGG 0.577005 contig510end:-12526 MsG0080048885.01.T01:CDS
CTTGAGCAGACATTATAGCC+TGG 0.579349 contig510end:+12572 MsG0080048885.01.T01:intergenic
TCAAGAATTTGCATATGGCT+GGG 0.580272 contig510end:-12022 MsG0080048885.01.T01:CDS
GTTCATAAGGTTCTTGCTGG+TGG 0.580761 contig510end:-13960 MsG0080048885.01.T01:CDS
CGATGAAAGTGTGATGGTCA+AGG 0.582644 contig510end:-12482 MsG0080048885.01.T01:CDS
TAATTGGAAGAAAATCAAGT+TGG 0.583220 contig510end:-14079 MsG0080048885.01.T01:CDS
CTGCTGCTTAAGATCGGTAG+GGG 0.584025 contig510end:+11914 MsG0080048885.01.T01:intergenic
TGGAGCTGACCTTAACAAGA+GGG 0.589538 contig510end:+12431 MsG0080048885.01.T01:intergenic
ACTGCTGCTTAAGATCGGTA+GGG 0.591481 contig510end:+11913 MsG0080048885.01.T01:intergenic
AGGCTATAATGTCTGCTCAA+GGG 0.594394 contig510end:-12570 MsG0080048885.01.T01:CDS
CAATGAATCGGCTCTGAAAG+GGG 0.595804 contig510end:-11520 MsG0080048885.01.T01:CDS
TGATGTAGATTTGTTTACAT+GGG 0.605979 contig510end:-10131 MsG0080048885.01.T01:three_prime_UTR
GATGAAAGTGTGATGGTCAA+GGG 0.606022 contig510end:-12481 MsG0080048885.01.T01:CDS
ATATTCTAGCATTAGGCCAA+AGG 0.607064 contig510end:+10676 MsG0080048885.01.T01:intergenic
GTTCAAAGCGAAAGTAGTTG+AGG 0.608997 contig510end:-10365 MsG0080048885.01.T01:CDS
AAGATCTTTGGACAGCCTGT+AGG 0.611650 contig510end:-11570 MsG0080048885.01.T01:CDS
GGCAAGAATTAATAATGCCG+TGG 0.613791 contig510end:+14159 MsG0080048885.01.T01:intergenic
AAATGACCCTACTGTTAAAG+GGG 0.615388 contig510end:-12758 MsG0080048885.01.T01:CDS
TGGTGCCTATATACCTGCTA+TGG 0.616593 contig510end:-12506 MsG0080048885.01.T01:CDS
CCAGTCACAACCCCACCAGA+AGG 0.618817 contig510end:+12820 MsG0080048885.01.T01:intergenic
AATGCTAGAATATCTGTGAT+GGG 0.621217 contig510end:-10666 MsG0080048885.01.T01:CDS
CATAGCTCCGCCATTAGGAA+GGG 0.621393 contig510end:+14013 MsG0080048885.01.T01:intergenic
TCTCAGAGCACAGGAGATTG+CGG 0.623049 contig510end:-12704 MsG0080048885.01.T01:CDS
AGCAGAGTTCAATGACTCCA+CGG 0.624090 contig510end:-14176 MsG0080048885.01.T01:five_prime_UTR
GAGCTGACCTTAACAAGAGG+GGG 0.626239 contig510end:+12433 MsG0080048885.01.T01:intergenic
GGTTATAATACAGTGGAACA+AGG 0.634491 contig510end:-10401 MsG0080048885.01.T01:intron
TTGGGTGCCCTTCCTAATGG+CGG 0.634839 contig510end:-14020 MsG0080048885.01.T01:CDS
CTGGAGCTGACCTTAACAAG+AGG 0.642396 contig510end:+12430 MsG0080048885.01.T01:intergenic
AGGAAGTCCTTATTACTCAA+CGG 0.644858 contig510end:-10329 MsG0080048885.01.T01:CDS
AGCTCAAGGAAAGAAGAACC+AGG 0.646634 contig510end:+13861 MsG0080048885.01.T01:intergenic
GATGTTCTGAAGAAAGACCA+AGG 0.657231 contig510end:+11461 MsG0080048885.01.T01:intergenic
TTGCCACAAACATACAAAGT+CGG 0.657316 contig510end:+12779 MsG0080048885.01.T01:intergenic
GTGTATCTTGTTGACAGTGG+TGG 0.659457 contig510end:-12661 MsG0080048885.01.T01:CDS
GCAAGTTGACATGATCAGGA+AGG 0.660856 contig510end:+10038 MsG0080048885.01.T01:intergenic
ATGTTCTGAAGAAAGACCAA+GGG 0.671246 contig510end:+11462 MsG0080048885.01.T01:intergenic
GTCTCTGCGGAGGATTTGGG+AGG 0.673290 contig510end:-12233 MsG0080048885.01.T01:CDS
TGGAGAAGAAGTCTCTGCGG+AGG 0.674342 contig510end:-12243 MsG0080048885.01.T01:CDS
CCTAACACCAATGCAATTTG+GGG 0.679734 contig510end:+12544 MsG0080048885.01.T01:intergenic
AATGACCCTACTGTTAAAGG+GGG 0.679889 contig510end:-12757 MsG0080048885.01.T01:CDS
GTCCTTATTACTCAACGGCG+AGG 0.680927 contig510end:-10324 MsG0080048885.01.T01:CDS
GGAGCTGACCTTAACAAGAG+GGG 0.682710 contig510end:+12432 MsG0080048885.01.T01:intergenic
ACAACCCCACCAGAAGGCAA+AGG 0.683577 contig510end:+12826 MsG0080048885.01.T01:intergenic
GTAGGTGGGCTCAAAATCCG+AGG 0.686992 contig510end:-11064 MsG0080048885.01.T01:intron
CTGTCAACAAGATACACACA+CGG 0.687428 contig510end:+12667 MsG0080048885.01.T01:intergenic
GATGGCTGTATCTTGCGCAA+AGG 0.692151 contig510end:-11007 MsG0080048885.01.T01:intron
TATGGCCGATGAAAGTGTGA+TGG 0.707459 contig510end:-12488 MsG0080048885.01.T01:CDS
TACTGGAGAAGAAGTCTCTG+CGG 0.708370 contig510end:-12246 MsG0080048885.01.T01:CDS
GCTGGAAACTATGCAATGTG+TGG 0.713945 contig510end:-10726 MsG0080048885.01.T01:CDS
TGTGTGTATCTTGTTGACAG+TGG 0.716426 contig510end:-12664 MsG0080048885.01.T01:CDS
ATGACCCTACTGTTAAAGGG+GGG 0.731933 contig510end:-12756 MsG0080048885.01.T01:CDS
GCTAGAATATCTGTGATGGG+TGG 0.747465 contig510end:-10663 MsG0080048885.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTTATAATAAAAA+TGG - contig510end:14190-14209 MsG0080048885.01.T01:five_prime_UTR 0.0%
!! AAATTGTAGTATATTTATAA+AGG - contig510end:13372-13391 MsG0080048885.01.T01:intron 10.0%
!!! ATGAATTAAAAAAATTTGTT+TGG - contig510end:12776-12795 MsG0080048885.01.T01:CDS 10.0%
!!! TTATGTTTTTATTAACTTTA+TGG - contig510end:10399-10418 MsG0080048885.01.T01:intron 10.0%
!! AATATAAAAATAAAGTTCCA+TGG + contig510end:12448-12467 MsG0080048885.01.T01:intergenic 15.0%
!! ACAAACAAAAATATGTAAAA+GGG - contig510end:14121-14140 MsG0080048885.01.T01:five_prime_UTR 15.0%
!! CATAAATACAATGATTAAAA+CGG + contig510end:12414-12433 MsG0080048885.01.T01:intergenic 15.0%
!! TTCAGTTTATCATAAAATAT+AGG + contig510end:11172-11191 MsG0080048885.01.T01:intergenic 15.0%
!! TTTATCTTGTGATAAATTAA+TGG - contig510end:13739-13758 MsG0080048885.01.T01:intron 15.0%
!!! AATACATCAAATTCTTTTTA+TGG - contig510end:11120-11139 MsG0080048885.01.T01:intron 15.0%
!!! AGTTATCTAACATAATTTTA+TGG + contig510end:10702-10721 MsG0080048885.01.T01:intergenic 15.0%
!!! ATACATCAAATTCTTTTTAT+GGG - contig510end:11121-11140 MsG0080048885.01.T01:intron 15.0%
!! AAATACAAGTTATGAGTATA+AGG - contig510end:12227-12246 MsG0080048885.01.T01:CDS 20.0%
!! AACATAAAAAGTAGTAGTAA+TGG + contig510end:10386-10405 MsG0080048885.01.T01:intergenic 20.0%
!! AGAAAATACATTATCACAAA+CGG + contig510end:11885-11904 MsG0080048885.01.T01:intergenic 20.0%
!! AGAAATGAGAAATACAAAAA+TGG - contig510end:11275-11294 MsG0080048885.01.T01:intron 20.0%
!! ATATATGATATAAGTGTCTA+TGG + contig510end:10796-10815 MsG0080048885.01.T01:intergenic 20.0%
!! ATTTAGACAAACAAATTTGT+TGG + contig510end:11047-11066 MsG0080048885.01.T01:intergenic 20.0%
!! CATTAATTGATTGACATTAT+AGG - contig510end:11927-11946 MsG0080048885.01.T01:CDS 20.0%
!! GAAAACATGTTTAAACTAAT+TGG - contig510end:10105-10124 MsG0080048885.01.T01:three_prime_UTR 20.0%
!! GACAAACAAAAATATGTAAA+AGG - contig510end:14120-14139 MsG0080048885.01.T01:five_prime_UTR 20.0%
!! TCAGGTAAAAATATTGTTAT+TGG - contig510end:13704-13723 MsG0080048885.01.T01:intron 20.0%
!! TGAAAACAACTTATAACTTA+CGG - contig510end:10724-10743 MsG0080048885.01.T01:CDS 20.0%
!! TGTTTATAGAAAGAATATCT+AGG + contig510end:13040-13059 MsG0080048885.01.T01:intergenic 20.0%
!! TTTGTATTTACCATTCATTT+GGG - contig510end:11214-11233 MsG0080048885.01.T01:intron 20.0%
!!! ATATTTTGTGAAACATTTAC+AGG + contig510end:12564-12583 MsG0080048885.01.T01:intergenic 20.0%
!!! ATTAGTTGATAATATTCATC+AGG - contig510end:13629-13648 MsG0080048885.01.T01:intron 20.0%
!!! CAGGTAAAAATATTGTTATT+GGG - contig510end:13705-13724 MsG0080048885.01.T01:intron 20.0%
!!! TGGAATTTTATTCAATGAAT+CGG - contig510end:12668-12687 MsG0080048885.01.T01:CDS 20.0%
!!! TTTAACAATTCTTGATTTGA+GGG + contig510end:13017-13036 MsG0080048885.01.T01:intergenic 20.0%
!!! TTTAGACAAACAAATTTGTT+GGG + contig510end:11046-11065 MsG0080048885.01.T01:intergenic 20.0%
! AAAATCACTATAATTGTTGG+TGG - contig510end:13441-13460 MsG0080048885.01.T01:intron 25.0%
! AACTATAACACATGTCTATT+TGG - contig510end:13114-13133 MsG0080048885.01.T01:intron 25.0%
! AGATGTTTCTTAACTGTAAT+AGG + contig510end:11479-11498 MsG0080048885.01.T01:intergenic 25.0%
! ATTTGTCTCAATGTATATCA+TGG - contig510end:13770-13789 MsG0080048885.01.T01:intron 25.0%
! CATTCTAAATACACCATATT+TGG + contig510end:13993-14012 MsG0080048885.01.T01:intergenic 25.0%
! CCTAAAATCACTATAATTGT+TGG - contig510end:13438-13457 MsG0080048885.01.T01:intron 25.0%
! CTTTGTATTTACCATTCATT+TGG - contig510end:11213-11232 MsG0080048885.01.T01:intron 25.0%
! TAATTGGAAGAAAATCAAGT+TGG - contig510end:10121-10140 MsG0080048885.01.T01:three_prime_UTR 25.0%
! TTTAATTCATACCATGAATC+CGG + contig510end:12766-12785 MsG0080048885.01.T01:intergenic 25.0%
!! CCAACAATTATAGTGATTTT+AGG + contig510end:13441-13460 MsG0080048885.01.T01:intergenic 25.0%
!! GTAAATACAAAGAGTATGTT+TGG + contig510end:11205-11224 MsG0080048885.01.T01:intergenic 25.0%
!! GTTTAACAATTCTTGATTTG+AGG + contig510end:13018-13037 MsG0080048885.01.T01:intergenic 25.0%
!! TAAACATGTTTTCTCTTCTA+TGG + contig510end:10098-10117 MsG0080048885.01.T01:intergenic 25.0%
!! TGATGTAGATTTGTTTACAT+GGG - contig510end:14069-14088 MsG0080048885.01.T01:CDS 25.0%
AAAGGCAATAAGAAAAAGCA+AGG - contig510end:13678-13697 MsG0080048885.01.T01:intron 30.0%
AATCCAACAAACATTTGACA+TGG - contig510end:10550-10569 MsG0080048885.01.T01:CDS 30.0%
AATGCTAGAATATCTGTGAT+GGG - contig510end:13534-13553 MsG0080048885.01.T01:intron 30.0%
ACAAATCTACATCAGACTTT+AGG + contig510end:14063-14082 MsG0080048885.01.T01:intergenic 30.0%
ACAAATTTGAGCTAAGATGT+TGG - contig510end:13057-13076 MsG0080048885.01.T01:intron 30.0%
ACCTTTCTTCTTCTAAGTAA+AGG + contig510end:10065-10084 MsG0080048885.01.T01:intergenic 30.0%
AGTTCATTGACATCATATAG+TGG + contig510end:12255-12274 MsG0080048885.01.T01:intergenic 30.0%
ATAACACATGTCTATTTGGT+AGG - contig510end:13118-13137 MsG0080048885.01.T01:intron 30.0%
ATCACAGATATTCTAGCATT+AGG + contig510end:13534-13553 MsG0080048885.01.T01:intergenic 30.0%
ATTGCTACACATAACTGTTT+AGG - contig510end:11067-11086 MsG0080048885.01.T01:intron 30.0%
CAACAACTATGACTGTAATT+AGG + contig510end:12938-12957 MsG0080048885.01.T01:intergenic 30.0%
CAAGTAACTATTAGACTAGT+TGG - contig510end:10468-10487 MsG0080048885.01.T01:intron 30.0%
CAATGTATATCATGGATTCA+TGG - contig510end:13778-13797 MsG0080048885.01.T01:intron 30.0%
CATGATTCCTTACAAATTAC+TGG - contig510end:13585-13604 MsG0080048885.01.T01:intron 30.0%
CTGCACATAGATTTCAAATA+AGG + contig510end:12589-12608 MsG0080048885.01.T01:intergenic 30.0%
GAATGTTATAAATAGTGTGC+TGG + contig510end:13229-13248 MsG0080048885.01.T01:intergenic 30.0%
GATGAATTCAAGAAACTGTA+TGG - contig510end:12357-12376 MsG0080048885.01.T01:intron 30.0%
GATTCATGGTTATAATACAG+TGG - contig510end:13792-13811 MsG0080048885.01.T01:intron 30.0%
GTAATTAGGACACAAAATGA+TGG + contig510end:12924-12943 MsG0080048885.01.T01:intergenic 30.0%
GTAGGAATTATTGGAAACAA+TGG - contig510end:12648-12667 MsG0080048885.01.T01:CDS 30.0%
TAAGAAAAAGCAAGGAATTC+AGG - contig510end:13686-13705 MsG0080048885.01.T01:intron 30.0%
TAATGCTAGAATATCTGTGA+TGG - contig510end:13533-13552 MsG0080048885.01.T01:intron 30.0%
TAGTGTCACATAAAGGATAT+TGG + contig510end:11814-11833 MsG0080048885.01.T01:intergenic 30.0%
TCAAGAAGAGAATTGTGTTT+GGG - contig510end:10162-10181 MsG0080048885.01.T01:three_prime_UTR 30.0%
TCATAGCTGAAAATAGCTTA+TGG + contig510end:10523-10542 MsG0080048885.01.T01:intergenic 30.0%
TGACATTGCCTTAATATCTA+AGG - contig510end:10576-10595 MsG0080048885.01.T01:intron 30.0%
TGGTAGAATATTCTATAACC+AGG - contig510end:11610-11629 MsG0080048885.01.T01:intron 30.0%
TTCTCTTCTTGACAGTAAAT+TGG + contig510end:10154-10173 MsG0080048885.01.T01:intergenic 30.0%
TTGACCAATATATAAGTGAG+AGG - contig510end:10913-10932 MsG0080048885.01.T01:intron 30.0%
TTGTCTGGAAATGATTAGAA+TGG - contig510end:12955-12974 MsG0080048885.01.T01:intron 30.0%
TTGTGTGTTTATCTCAAGAA+AGG - contig510end:11299-11318 MsG0080048885.01.T01:intron 30.0%
TTGTTTCCAATAATTCCTAC+AGG + contig510end:12648-12667 MsG0080048885.01.T01:intergenic 30.0%
! AAATATTGTTATTGGGAGCA+AGG - contig510end:13712-13731 MsG0080048885.01.T01:intron 30.0%
! ATGTCGGAAAATAGTGTTTT+TGG - contig510end:10600-10619 MsG0080048885.01.T01:intron 30.0%
! ATGTTTTCTCTTCTATGGTT+CGG + contig510end:10093-10112 MsG0080048885.01.T01:intergenic 30.0%
! CCTTAATATCTAAGGTATGT+CGG - contig510end:10584-10603 MsG0080048885.01.T01:intron 30.0%
! CTACCAAAATTTTCCTTATC+CGG + contig510end:11596-11615 MsG0080048885.01.T01:intergenic 30.0%
! CTGATGTAGATTTGTTTACA+TGG - contig510end:14068-14087 MsG0080048885.01.T01:CDS 30.0%
! TTTCCGGATAAGGAAAATTT+TGG - contig510end:11590-11609 MsG0080048885.01.T01:CDS 30.0%
! TTTTCATCAAACTACTAGCA+GGG + contig510end:13090-13109 MsG0080048885.01.T01:intergenic 30.0%
! TTTTTCATCAAACTACTAGC+AGG + contig510end:13091-13110 MsG0080048885.01.T01:intergenic 30.0%
!! ATTCATTTTTCCTCCAATGT+AGG + contig510end:10885-10904 MsG0080048885.01.T01:intergenic 30.0%
!! TATTTTGCTCAAGGTATTTG+TGG - contig510end:12027-12046 MsG0080048885.01.T01:CDS 30.0%
!!! AATGGCACTATTTTTTTAGC+AGG - contig510end:11743-11762 MsG0080048885.01.T01:intron 30.0%
!!! ATGGCACTATTTTTTTAGCA+GGG - contig510end:11744-11763 MsG0080048885.01.T01:intron 30.0%
AAATGACCCTACTGTTAAAG+GGG - contig510end:11442-11461 MsG0080048885.01.T01:intron 35.0%
AAGCTCTCAAAAACACCTTA+TGG - contig510end:10492-10511 MsG0080048885.01.T01:intron 35.0%
AATTTCATGCTCTTGCACTT+GGG - contig510end:12145-12164 MsG0080048885.01.T01:intron 35.0%
ACAATGTCACTAATACAGAC+TGG + contig510end:12102-12121 MsG0080048885.01.T01:intergenic 35.0%
ACCTAAAACCTTGAGACATT+GGG + contig510end:10948-10967 MsG0080048885.01.T01:intergenic 35.0%
ACTCCAATCTCATGTTCATA+AGG - contig510end:10227-10246 MsG0080048885.01.T01:CDS 35.0%
AGACGATCAATTCTTTCTCT+TGG + contig510end:10312-10331 MsG0080048885.01.T01:intergenic 35.0%
AGAGCATGAAATTCATCTAC+AGG + contig510end:12138-12157 MsG0080048885.01.T01:intergenic 35.0%
AGGAAGTCCTTATTACTCAA+CGG - contig510end:13871-13890 MsG0080048885.01.T01:CDS 35.0%
ATATTCTAGCATTAGGCCAA+AGG + contig510end:13527-13546 MsG0080048885.01.T01:intergenic 35.0%
ATCCTTTATGTGACACTATC+TGG - contig510end:11816-11835 MsG0080048885.01.T01:intron 35.0%
ATTCTGACTTCAGAGAAGAT+TGG - contig510end:12830-12849 MsG0080048885.01.T01:CDS 35.0%
ATTTGTTTACATGGGAAGAG+AGG - contig510end:14077-14096 MsG0080048885.01.T01:CDS 35.0%
CAAATGACCCTACTGTTAAA+GGG - contig510end:11441-11460 MsG0080048885.01.T01:intron 35.0%
CATCGTCAAGAATTTGCATA+TGG - contig510end:12173-12192 MsG0080048885.01.T01:intron 35.0%
CCGACATACCTTAGATATTA+AGG + contig510end:10587-10606 MsG0080048885.01.T01:intergenic 35.0%
CGGGTTTCACAATGAATATT+TGG - contig510end:12515-12534 MsG0080048885.01.T01:CDS 35.0%
CTTCTTGACAGTAAATTGGA+GGG + contig510end:10150-10169 MsG0080048885.01.T01:intergenic 35.0%
GAACCTTATGAACATGAGAT+TGG + contig510end:10233-10252 MsG0080048885.01.T01:intergenic 35.0%
GAGTCCTCTCACTTATATAT+TGG + contig510end:10920-10939 MsG0080048885.01.T01:intergenic 35.0%
GCCTTTACTTAGAAGAAGAA+AGG - contig510end:10061-10080 MsG0080048885.01.T01:three_prime_UTR 35.0%
GCGACAGAAAATACCAAATA+TGG - contig510end:13977-13996 MsG0080048885.01.T01:CDS 35.0%
GCTGATACAAGAAAAGTGAT+TGG - contig510end:13926-13945 MsG0080048885.01.T01:CDS 35.0%
GGAAATGATTAGAATGGTGA+AGG - contig510end:12961-12980 MsG0080048885.01.T01:intron 35.0%
GGTTATAATACAGTGGAACA+AGG - contig510end:13799-13818 MsG0080048885.01.T01:intron 35.0%
GTCAAGAAGAGAATTGTGTT+TGG - contig510end:10161-10180 MsG0080048885.01.T01:three_prime_UTR 35.0%
GTTCTGTCTCAAATAGAGAA+AGG - contig510end:13660-13679 MsG0080048885.01.T01:intron 35.0%
TACAGGTTGCTGAATATACT+TGG + contig510end:12547-12566 MsG0080048885.01.T01:intergenic 35.0%
TACCTAAAACCTTGAGACAT+TGG + contig510end:10949-10968 MsG0080048885.01.T01:intergenic 35.0%
TCAAGAATTTGCATATGGCT+GGG - contig510end:12178-12197 MsG0080048885.01.T01:intron 35.0%
TCCTTACAAATTACTGGACT+TGG - contig510end:13591-13610 MsG0080048885.01.T01:intron 35.0%
TCTTCTTGACAGTAAATTGG+AGG + contig510end:10151-10170 MsG0080048885.01.T01:intergenic 35.0%
TTACAGTCATAGTTGTTGTC+TGG - contig510end:12940-12959 MsG0080048885.01.T01:intron 35.0%
TTCGCATAAATATCTGCTAC+AGG - contig510end:13413-13432 MsG0080048885.01.T01:intron 35.0%
TTGCCACAAACATACAAAGT+CGG + contig510end:11424-11443 MsG0080048885.01.T01:intergenic 35.0%
TTTATGTGAATGTGTTGCCA+TGG - contig510end:12428-12447 MsG0080048885.01.T01:intron 35.0%
TTTCCACAAACCCAAATGAA+TGG + contig510end:11227-11246 MsG0080048885.01.T01:intergenic 35.0%
! ACAGGTTTTGCAAAGATCTT+TGG - contig510end:12618-12637 MsG0080048885.01.T01:CDS 35.0%
! ACTATTCCTTTTCACAGCTT+CGG + contig510end:10271-10290 MsG0080048885.01.T01:intergenic 35.0%
! ATAATTGTTGGTGGAAGCTT+TGG - contig510end:13450-13469 MsG0080048885.01.T01:intron 35.0%
! ATCAAACTGCTGCTTAAGAT+CGG + contig510end:12295-12314 MsG0080048885.01.T01:intergenic 35.0%
! ATGAGTTGACAGACCTTTAT+CGG - contig510end:12481-12500 MsG0080048885.01.T01:CDS 35.0%
! ATTTGGTATTTTCTGTCGCA+CGG + contig510end:13976-13995 MsG0080048885.01.T01:intergenic 35.0%
! GTTTCAGACTATTTTGCTCA+AGG - contig510end:12018-12037 MsG0080048885.01.T01:CDS 35.0%
! TCCAAGTCCAGTAATTTGTA+AGG + contig510end:13595-13614 MsG0080048885.01.T01:intergenic 35.0%
! TGGTGTTAAACTAACTTGTG+TGG - contig510end:10975-10994 MsG0080048885.01.T01:intron 35.0%
! TTACCATTCATTTGGGTTTG+TGG - contig510end:11221-11240 MsG0080048885.01.T01:intron 35.0%
!! AACAAATTTGTTGGGTCATG+AGG + contig510end:11038-11057 MsG0080048885.01.T01:intergenic 35.0%
!! ACAAATTTGTTGGGTCATGA+GGG + contig510end:11037-11056 MsG0080048885.01.T01:intergenic 35.0%
!! ATCACTTTTCTTGTATCAGC+TGG + contig510end:13926-13945 MsG0080048885.01.T01:intergenic 35.0%
!! ATGTTCTGAAGAAAGACCAA+GGG + contig510end:12741-12760 MsG0080048885.01.T01:intergenic 35.0%
!!! ATTTTGTTGTTGCAAGTGTG+AGG - contig510end:10847-10866 MsG0080048885.01.T01:intron 35.0%
!!! CAAGGTTTTAGGTAAAGATG+TGG - contig510end:10955-10974 MsG0080048885.01.T01:intron 35.0%
!!! CTTTATCGGTTGTTGGTTTT+CGG - contig510end:12495-12514 MsG0080048885.01.T01:CDS 35.0%
!!! TTTATCGGTTGTTGGTTTTC+GGG - contig510end:12496-12515 MsG0080048885.01.T01:CDS 35.0%
AATGACCCTACTGTTAAAGG+GGG - contig510end:11443-11462 MsG0080048885.01.T01:intron 40.0%
ACACATGTCTATTTGGTAGG+TGG - contig510end:13121-13140 MsG0080048885.01.T01:intron 40.0%
ACCAATCCAATGATGTTCTG+AGG + contig510end:12866-12885 MsG0080048885.01.T01:intergenic 40.0%
AGCAAAGTCAGGTGCAAAAA+TGG - contig510end:13169-13188 MsG0080048885.01.T01:intron 40.0%
AGCCAGATAGTGTCACATAA+AGG + contig510end:11821-11840 MsG0080048885.01.T01:intergenic 40.0%
AGCCTAACACCAATGCAATT+TGG + contig510end:11661-11680 MsG0080048885.01.T01:intergenic 40.0%
AGGCTATAATGTCTGCTCAA+GGG - contig510end:11630-11649 MsG0080048885.01.T01:intron 40.0%
ATTGATCGTCTTCTTGATCC+TGG - contig510end:10321-10340 MsG0080048885.01.T01:CDS 40.0%
CAATGCGAGAAATCACTTCT+CGG + contig510end:12320-12339 MsG0080048885.01.T01:intergenic 40.0%
CACATGTCTATTTGGTAGGT+GGG - contig510end:13122-13141 MsG0080048885.01.T01:intron 40.0%
CATGTTCATAAGGTTCTTGC+TGG - contig510end:10237-10256 MsG0080048885.01.T01:CDS 40.0%
CCTAACACCAATGCAATTTG+GGG + contig510end:11659-11678 MsG0080048885.01.T01:intergenic 40.0%
CGAAAACCAACAACCGATAA+AGG + contig510end:12497-12516 MsG0080048885.01.T01:intergenic 40.0%
CTGTCAACAAGATACACACA+CGG + contig510end:11536-11555 MsG0080048885.01.T01:intergenic 40.0%
CTTGACCATCACACTTTCAT+CGG + contig510end:11720-11739 MsG0080048885.01.T01:intergenic 40.0%
GAACATGAAGTTCGGACTAT+AGG + contig510end:13505-13524 MsG0080048885.01.T01:intergenic 40.0%
GAATTTCATGCTCTTGCACT+TGG - contig510end:12144-12163 MsG0080048885.01.T01:intron 40.0%
GATAATATTCATCAGGCTGC+TGG - contig510end:13636-13655 MsG0080048885.01.T01:intron 40.0%
GCAAATGACCCTACTGTTAA+AGG - contig510end:11440-11459 MsG0080048885.01.T01:intron 40.0%
GCCTAACACCAATGCAATTT+GGG + contig510end:11660-11679 MsG0080048885.01.T01:intergenic 40.0%
GGCAAGAATTAATAATGCCG+TGG + contig510end:10044-10063 MsG0080048885.01.T01:intergenic 40.0%
GTCAAGAATTTGCATATGGC+TGG - contig510end:12177-12196 MsG0080048885.01.T01:intron 40.0%
GTCTTTCTTCAGAACATCAC+CGG - contig510end:12744-12763 MsG0080048885.01.T01:CDS 40.0%
GTGATTTCTCGCATTGTTGA+CGG - contig510end:12324-12343 MsG0080048885.01.T01:intron 40.0%
GTGCCATGTCAAATGTTTGT+TGG + contig510end:10556-10575 MsG0080048885.01.T01:intergenic 40.0%
GTTCAAAGCGAAAGTAGTTG+AGG - contig510end:13835-13854 MsG0080048885.01.T01:intron 40.0%
TAAGAAACATCTCAGAGCAC+AGG - contig510end:11487-11506 MsG0080048885.01.T01:CDS 40.0%
TAAGAACCTGTGAAAGCTCA+AGG + contig510end:10356-10375 MsG0080048885.01.T01:intergenic 40.0%
TACTCAACGTAACATTCCCT+TGG - contig510end:12722-12741 MsG0080048885.01.T01:CDS 40.0%
TAGCTTATGGACATGCCATA+AGG + contig510end:10510-10529 MsG0080048885.01.T01:intergenic 40.0%
TATGTGCAGACTCTTGTAAC+AGG - contig510end:12600-12619 MsG0080048885.01.T01:CDS 40.0%
TCCTCAGAACATCATTGGAT+TGG - contig510end:12862-12881 MsG0080048885.01.T01:intron 40.0%
TGAGTGAATATGAAGCTTGC+AGG - contig510end:11332-11351 MsG0080048885.01.T01:intron 40.0%
TGTGTGTATCTTGTTGACAG+TGG - contig510end:11536-11555 MsG0080048885.01.T01:CDS 40.0%
TTCTCTCCTCAGAACATCAT+TGG - contig510end:12857-12876 MsG0080048885.01.T01:intron 40.0%
TTCTTTCCTTGAGCTTTCAC+AGG - contig510end:10347-10366 MsG0080048885.01.T01:CDS 40.0%
TTGACATTATAGGCTGCTAC+TGG - contig510end:11937-11956 MsG0080048885.01.T01:CDS 40.0%
! ACCCAATGTCTCAAGGTTTT+AGG - contig510end:10944-10963 MsG0080048885.01.T01:intron 40.0%
! AGTTTGAAGTCCTACATTGG+AGG - contig510end:10872-10891 MsG0080048885.01.T01:intron 40.0%
! ATTTGTCTGAGATGTACGCA+GGG - contig510end:10626-10645 MsG0080048885.01.T01:intron 40.0%
! CTATTCCTTTTCACAGCTTC+GGG + contig510end:10270-10289 MsG0080048885.01.T01:intergenic 40.0%
! GATGAAAGTGTGATGGTCAA+GGG - contig510end:11719-11738 MsG0080048885.01.T01:intron 40.0%
! GTGAGTTTGAAGTCCTACAT+TGG - contig510end:10869-10888 MsG0080048885.01.T01:intron 40.0%
! TGTTGCAAGTTGACATGATC+AGG + contig510end:14169-14188 MsG0080048885.01.T01:intergenic 40.0%
! TTTAAAGCATGAGCACCTCT+AGG + contig510end:10663-10682 MsG0080048885.01.T01:intergenic 40.0%
! TTTGCTCAAGGTATTTGTGG+TGG - contig510end:12030-12049 MsG0080048885.01.T01:CDS 40.0%
!! AATGATGTTCTGAGGAGAGA+AGG + contig510end:12858-12877 MsG0080048885.01.T01:intergenic 40.0%
!! CAAATTTGTTGGGTCATGAG+GGG + contig510end:11036-11055 MsG0080048885.01.T01:intergenic 40.0%
!! GAGCATAAGATAAGAGTGTC+TGG + contig510end:11792-11811 MsG0080048885.01.T01:intergenic 40.0%
!! GATGTTCTGAAGAAAGACCA+AGG + contig510end:12742-12761 MsG0080048885.01.T01:intergenic 40.0%
!! TCAATGAATCGGCTCTGAAA+GGG - contig510end:12679-12698 MsG0080048885.01.T01:CDS 40.0%
!! TTCAATGAATCGGCTCTGAA+AGG - contig510end:12678-12697 MsG0080048885.01.T01:CDS 40.0%
!!! TTCGCTGCATGTGTTGTTTT+GGG - contig510end:13276-13295 MsG0080048885.01.T01:intron 40.0%
AAGATCTTTGGACAGCCTGT+AGG - contig510end:12630-12649 MsG0080048885.01.T01:CDS 45.0%
AAGTCCCCCCTTTAACAGTA+GGG + contig510end:11451-11470 MsG0080048885.01.T01:intergenic 45.0%
ACAGTGGAACAAGGAAGAAG+AGG - contig510end:13808-13827 MsG0080048885.01.T01:intron 45.0%
AGAAACTGTATGGCACTGTG+AGG - contig510end:12367-12386 MsG0080048885.01.T01:intron 45.0%
AGCAGAGTTCAATGACTCCA+CGG - contig510end:10024-10043 MsG0080048885.01.T01:three_prime_UTR 45.0%
AGCTCAAGGAAAGAAGAACC+AGG + contig510end:10342-10361 MsG0080048885.01.T01:intergenic 45.0%
AGGGACACTCATAATCCTAG+AGG - contig510end:10645-10664 MsG0080048885.01.T01:intron 45.0%
AGGGATTCCCCAAATTGCAT+TGG - contig510end:11649-11668 MsG0080048885.01.T01:intron 45.0%
AGTGTGATGGTCAAGGGAAA+TGG - contig510end:11725-11744 MsG0080048885.01.T01:intron 45.0%
ATCGGCCATAGCAGGTATAT+AGG + contig510end:11702-11721 MsG0080048885.01.T01:intergenic 45.0%
ATGACCCTACTGTTAAAGGG+GGG - contig510end:11444-11463 MsG0080048885.01.T01:intron 45.0%
CAGGCTATAATGTCTGCTCA+AGG - contig510end:11629-11648 MsG0080048885.01.T01:intron 45.0%
CTGTCAACTCATCAAGCTTC+AGG + contig510end:12473-12492 MsG0080048885.01.T01:intergenic 45.0%
CTTGAGCAGACATTATAGCC+TGG + contig510end:11631-11650 MsG0080048885.01.T01:intergenic 45.0%
GAAACTGTATGGCACTGTGA+GGG - contig510end:12368-12387 MsG0080048885.01.T01:intron 45.0%
GCAAATGGCATAGCAAAGTC+AGG - contig510end:13158-13177 MsG0080048885.01.T01:intron 45.0%
GCTGGAAACTATGCAATGTG+TGG - contig510end:13474-13493 MsG0080048885.01.T01:intron 45.0%
GGACAGCCTGTAGGAATTAT+TGG - contig510end:12639-12658 MsG0080048885.01.T01:CDS 45.0%
GGCCAAAGGAACATGAAGTT+CGG + contig510end:13513-13532 MsG0080048885.01.T01:intergenic 45.0%
GGTGGATATGCACATCTAAG+TGG - contig510end:12048-12067 MsG0080048885.01.T01:CDS 45.0%
GTATCTTGCGCAAAGGTTAG+TGG - contig510end:13200-13219 MsG0080048885.01.T01:intron 45.0%
GTCAGGTGCAAAAATGGTGA+TGG - contig510end:13175-13194 MsG0080048885.01.T01:intron 45.0%
GTCCGAACTTCATGTTCCTT+TGG - contig510end:13508-13527 MsG0080048885.01.T01:intron 45.0%
GTGTATCTTGTTGACAGTGG+TGG - contig510end:11539-11558 MsG0080048885.01.T01:CDS 45.0%
GTTCATAAGGTTCTTGCTGG+TGG - contig510end:10240-10259 MsG0080048885.01.T01:CDS 45.0%
GTTTACATGGGAAGAGAGGT+GGG - contig510end:14081-14100 MsG0080048885.01.T01:CDS 45.0%
TAAGTCCCCCCTTTAACAGT+AGG + contig510end:11452-11471 MsG0080048885.01.T01:intergenic 45.0%
TACTGGAGAAGAAGTCTCTG+CGG - contig510end:11954-11973 MsG0080048885.01.T01:CDS 45.0%
TATGAAGAGCCTTTGCCTTC+TGG - contig510end:11365-11384 MsG0080048885.01.T01:intron 45.0%
TCAGAACATCACCGGATTCA+TGG - contig510end:12752-12771 MsG0080048885.01.T01:CDS 45.0%
TGCAGTACACTGCAAGACTT+CGG - contig510end:11993-12012 MsG0080048885.01.T01:CDS 45.0%
TGGAGCTGACCTTAACAAGA+GGG + contig510end:11772-11791 MsG0080048885.01.T01:intergenic 45.0%
TGGTGCCTATATACCTGCTA+TGG - contig510end:11694-11713 MsG0080048885.01.T01:intron 45.0%
TGTTTACATGGGAAGAGAGG+TGG - contig510end:14080-14099 MsG0080048885.01.T01:CDS 45.0%
! AACTGCTGCTTAAGATCGGT+AGG + contig510end:12291-12310 MsG0080048885.01.T01:intergenic 45.0%
! ACTGCTGCTTAAGATCGGTA+GGG + contig510end:12290-12309 MsG0080048885.01.T01:intergenic 45.0%
! ATTTTCTGTCGCACGGTTCA+AGG + contig510end:13969-13988 MsG0080048885.01.T01:intergenic 45.0%
! CATTTGTCTGAGATGTACGC+AGG - contig510end:10625-10644 MsG0080048885.01.T01:intron 45.0%
! CCCCAAATTGCATTGGTGTT+AGG - contig510end:11656-11675 MsG0080048885.01.T01:intron 45.0%
! CGATGAAAGTGTGATGGTCA+AGG - contig510end:11718-11737 MsG0080048885.01.T01:intron 45.0%
! CTAACTTGTGTGGTTGCTCA+TGG - contig510end:10985-11004 MsG0080048885.01.T01:intron 45.0%
! CTTTGCTATGCCATTTGCCT+CGG + contig510end:13156-13175 MsG0080048885.01.T01:intergenic 45.0%
! GACAGACCTTTATCGGTTGT+TGG - contig510end:12488-12507 MsG0080048885.01.T01:CDS 45.0%
! GCAAGTTGACATGATCAGGA+AGG + contig510end:14165-14184 MsG0080048885.01.T01:intergenic 45.0%
! GCTAGAATATCTGTGATGGG+TGG - contig510end:13537-13556 MsG0080048885.01.T01:intron 45.0%
! TATGGCCGATGAAAGTGTGA+TGG - contig510end:11712-11731 MsG0080048885.01.T01:intron 45.0%
! TGGCCGACTTTGTATGTTTG+TGG - contig510end:11418-11437 MsG0080048885.01.T01:intron 45.0%
!! CAATGAATCGGCTCTGAAAG+GGG - contig510end:12680-12699 MsG0080048885.01.T01:CDS 45.0%
!!! GTTCGCTGCATGTGTTGTTT+TGG - contig510end:13275-13294 MsG0080048885.01.T01:intron 45.0%
!!! TCGCTGCATGTGTTGTTTTG+GGG - contig510end:13277-13296 MsG0080048885.01.T01:intron 45.0%
AAGAGCCTTTGCCTTCTGGT+GGG - contig510end:11369-11388 MsG0080048885.01.T01:intron 50.0%
ACACTTTCATCGGCCATAGC+AGG + contig510end:11710-11729 MsG0080048885.01.T01:intergenic 50.0%
AGAAGTCTCTGCGGAGGATT+TGG - contig510end:11963-11982 MsG0080048885.01.T01:CDS 50.0%
AGCCTCGCCGTTGAGTAATA+AGG + contig510end:13881-13900 MsG0080048885.01.T01:intergenic 50.0%
ATACAAAGTCGGCCATGCAC+TGG + contig510end:11413-11432 MsG0080048885.01.T01:intergenic 50.0%
ATTACTCAACGGCGAGGCTT+TGG - contig510end:13882-13901 MsG0080048885.01.T01:CDS 50.0%
CAAGCAGGCTGATGTCTTTC+CGG - contig510end:11574-11593 MsG0080048885.01.T01:CDS 50.0%
CATAAGGTTCTTGCTGGTGG+TGG - contig510end:10243-10262 MsG0080048885.01.T01:CDS 50.0%
CATAGCTCCGCCATTAGGAA+GGG + contig510end:10190-10209 MsG0080048885.01.T01:intergenic 50.0%
CTCAGGGGATCATCCACATT+AGG + contig510end:11011-11030 MsG0080048885.01.T01:intergenic 50.0%
CTCGCAAACCCAATGTCTCA+AGG - contig510end:10937-10956 MsG0080048885.01.T01:intron 50.0%
CTGGAGCTGACCTTAACAAG+AGG + contig510end:11773-11792 MsG0080048885.01.T01:intergenic 50.0%
GAAGTCTCTGCGGAGGATTT+GGG - contig510end:11964-11983 MsG0080048885.01.T01:CDS 50.0%
GAGCTGACCTTAACAAGAGG+GGG + contig510end:11770-11789 MsG0080048885.01.T01:intergenic 50.0%
GATGGCTGTATCTTGCGCAA+AGG - contig510end:13193-13212 MsG0080048885.01.T01:intron 50.0%
GCAGTACACTGCAAGACTTC+GGG - contig510end:11994-12013 MsG0080048885.01.T01:CDS 50.0%
GGAAAGACATCAGCCTGCTT+GGG + contig510end:11575-11594 MsG0080048885.01.T01:intergenic 50.0%
GGAGCTGACCTTAACAAGAG+GGG + contig510end:11771-11790 MsG0080048885.01.T01:intergenic 50.0%
GGCTCAAAATCCGAGGCAAA+TGG - contig510end:13143-13162 MsG0080048885.01.T01:intron 50.0%
GGCTGATGTCTTTCCGGATA+AGG - contig510end:11580-11599 MsG0080048885.01.T01:CDS 50.0%
GGGAGAGATGTCTCGACAAA+TGG - contig510end:12198-12217 MsG0080048885.01.T01:CDS 50.0%
GTCCTTATTACTCAACGGCG+AGG - contig510end:13876-13895 MsG0080048885.01.T01:CDS 50.0%
GTTGAGGCGTATGAGAGAGA+AGG - contig510end:13851-13870 MsG0080048885.01.T01:intron 50.0%
TCATGCTCTTGCACTTGGGA+GGG - contig510end:12149-12168 MsG0080048885.01.T01:intron 50.0%
TCTCAGAGCACAGGAGATTG+CGG - contig510end:11496-11515 MsG0080048885.01.T01:CDS 50.0%
TGGTTGCTCATGGCCTAATG+TGG - contig510end:10995-11014 MsG0080048885.01.T01:intron 50.0%
TGTTCCATAGCTCCGCCATT+AGG + contig510end:10195-10214 MsG0080048885.01.T01:intergenic 50.0%
TGTTTGGGTGCCCTTCCTAA+TGG - contig510end:10177-10196 MsG0080048885.01.T01:three_prime_UTR 50.0%
TTACTCAACGGCGAGGCTTT+GGG - contig510end:13883-13902 MsG0080048885.01.T01:CDS 50.0%
TTCATGCTCTTGCACTTGGG+AGG - contig510end:12148-12167 MsG0080048885.01.T01:intron 50.0%
! CTGCTGCTTAAGATCGGTAG+GGG + contig510end:12289-12308 MsG0080048885.01.T01:intergenic 50.0%
!!! GTGTTGTTTTGGGGCAGTGA+CGG - contig510end:13286-13305 MsG0080048885.01.T01:intron 50.0%
ACAACCCCACCAGAAGGCAA+AGG + contig510end:11377-11396 MsG0080048885.01.T01:intergenic 55.0%
AGACATCAGCCTGCTTGGGA+AGG + contig510end:11571-11590 MsG0080048885.01.T01:intergenic 55.0%
AGAGCCTTTGCCTTCTGGTG+GGG - contig510end:11370-11389 MsG0080048885.01.T01:intron 55.0%
CCATAGCTCCGCCATTAGGA+AGG + contig510end:10191-10210 MsG0080048885.01.T01:intergenic 55.0%
CGGAAAGACATCAGCCTGCT+TGG + contig510end:11576-11595 MsG0080048885.01.T01:intergenic 55.0%
CTTCTGGTGGGGTTGTGACT+GGG - contig510end:11381-11400 MsG0080048885.01.T01:intron 55.0%
GAAGAGCCTTTGCCTTCTGG+TGG - contig510end:11368-11387 MsG0080048885.01.T01:intron 55.0%
GAGAGGTGGGAGAGGTTGAA+TGG - contig510end:14094-14113 MsG0080048885.01.T01:exon 55.0%
GTGGACCCGAAGCTGTGAAA+AGG - contig510end:10262-10281 MsG0080048885.01.T01:CDS 55.0%
GTGTTAGGCTCTTGCACTGC+TGG - contig510end:11671-11690 MsG0080048885.01.T01:intron 55.0%
TGGAGAAGAAGTCTCTGCGG+AGG - contig510end:11957-11976 MsG0080048885.01.T01:CDS 55.0%
TGGTGCTTTCCTTCCCAAGC+AGG - contig510end:11559-11578 MsG0080048885.01.T01:CDS 55.0%
TTAGGCTCTTGCACTGCTGG+TGG - contig510end:11674-11693 MsG0080048885.01.T01:intron 55.0%
TTGGGTGCCCTTCCTAATGG+CGG - contig510end:10180-10199 MsG0080048885.01.T01:three_prime_UTR 55.0%
! CCTTCCTAATGGCGGAGCTA+TGG - contig510end:10188-10207 MsG0080048885.01.T01:exon 55.0%
! GTAGGTGGGCTCAAAATCCG+AGG - contig510end:13136-13155 MsG0080048885.01.T01:intron 55.0%
! GTTGGTGGAAGCTTTGGTGC+TGG - contig510end:13456-13475 MsG0080048885.01.T01:intron 55.0%
!! ATCTGTGATGGGTGGTGCTC+AGG - contig510end:13545-13564 MsG0080048885.01.T01:intron 55.0%
ACTGGGATCGGTCCAGTGCA+TGG - contig510end:11398-11417 MsG0080048885.01.T01:intron 60.0%
AGCAGGGCCCCCTCTTGTTA+AGG - contig510end:11760-11779 MsG0080048885.01.T01:intron 60.0%
CATGGGAAGAGAGGTGGGAG+AGG - contig510end:14086-14105 MsG0080048885.01.T01:CDS 60.0%
CCAGTCACAACCCCACCAGA+AGG + contig510end:11383-11402 MsG0080048885.01.T01:intergenic 60.0%
CCTTCTGGTGGGGTTGTGAC+TGG - contig510end:11380-11399 MsG0080048885.01.T01:intron 60.0%
GGTGGGGTTGTGACTGGGAT+CGG - contig510end:11386-11405 MsG0080048885.01.T01:intron 60.0%
GTCTCTGCGGAGGATTTGGG+AGG - contig510end:11967-11986 MsG0080048885.01.T01:CDS 60.0%
TGGGTCATGAGGGGAGCTCA+GGG + contig510end:11027-11046 MsG0080048885.01.T01:intergenic 60.0%
TTGGGTCATGAGGGGAGCTC+AGG + contig510end:11028-11047 MsG0080048885.01.T01:intergenic 60.0%
!! ACGGCGAGGCTTTGGGATGA+TGG - contig510end:13890-13909 MsG0080048885.01.T01:CDS 60.0%
!!! GTTTTGGGGCAGTGACGGTG+AGG - contig510end:13291-13310 MsG0080048885.01.T01:intron 60.0%
GGGTCATGAGGGGAGCTCAG+GGG + contig510end:11026-11045 MsG0080048885.01.T01:intergenic 65.0%
Chromosome Type Strat End Strand Name
contig510end gene 9998 14224 9998 ID=MsG0080048885.01;Name=MsG0080048885.01
contig510end mRNA 9998 14224 9998 ID=MsG0080048885.01.T01;Parent=MsG0080048885.01;Name=MsG0080048885.01.T01;_AED=0.50;_eAED=0.50;_QI=113|1|1|1|1|1|9|209|552
contig510end exon 9998 10410 9998 ID=MsG0080048885.01.T01:exon:10722;Parent=MsG0080048885.01.T01
contig510end exon 10515 10571 10515 ID=MsG0080048885.01.T01:exon:10721;Parent=MsG0080048885.01.T01
contig510end exon 10656 10787 10656 ID=MsG0080048885.01.T01:exon:10720;Parent=MsG0080048885.01.T01
contig510end exon 11008 11082 11008 ID=MsG0080048885.01.T01:exon:10719;Parent=MsG0080048885.01.T01
contig510end exon 11449 11613 11449 ID=MsG0080048885.01.T01:exon:10718;Parent=MsG0080048885.01.T01
contig510end exon 11839 12080 11839 ID=MsG0080048885.01.T01:exon:10717;Parent=MsG0080048885.01.T01
contig510end exon 12183 12273 12183 ID=MsG0080048885.01.T01:exon:10716;Parent=MsG0080048885.01.T01
contig510end exon 12441 12875 12441 ID=MsG0080048885.01.T01:exon:10715;Parent=MsG0080048885.01.T01
contig510end exon 13854 14224 13854 ID=MsG0080048885.01.T01:exon:10714;Parent=MsG0080048885.01.T01
contig510end five_prime_UTR 14112 14224 14112 ID=MsG0080048885.01.T01:five_prime_utr;Parent=MsG0080048885.01.T01
contig510end CDS 13854 14111 13854 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end CDS 12441 12875 12441 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end CDS 12183 12273 12183 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end CDS 11839 12080 11839 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end CDS 11449 11613 11449 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end CDS 11008 11082 11008 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end CDS 10656 10787 10656 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end CDS 10515 10571 10515 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end CDS 10207 10410 10207 ID=MsG0080048885.01.T01:cds;Parent=MsG0080048885.01.T01
contig510end three_prime_UTR 9998 10206 9998 ID=MsG0080048885.01.T01:three_prime_utr;Parent=MsG0080048885.01.T01
Gene Sequence

>MsG0080048885.01.T01

ATGTTTAAACTAATTGGAAGAAAATCAAGTTGGATACCCTCCAATTTACTGTCAAGAAGAGAATTGTGTTTGGGTGCCCTTCCTAATGGCGGAGCTATGGAACACTTGATCACTCAACTCCAATCTCATGTTCATAAGGTTCTTGCTGGTGGTGGACCCGAAGCTGTGAAAAGGAATAGTAGTAGAAATAAGCTTTTACCAAGAGAAAGAATTGATCGTCTTCTTGATCCTGGTTCTTCTTTCCTTGAGCTTTCACAGCTTGCAGGACACGAGTTGTATGAAGAGCCTTTGCCTTCTGGTGGGGTTGTGACTGGGATCGGTCCAGTGCATGGCCGACTTTGTATGTTTGTGGCAAATGACCCTACTGTTAAAGGGGGGACTTATTATCCTATTACAGTTAAGAAACATCTCAGAGCACAGGAGATTGCGGCTCAATGCAAATTGCCGTGTGTGTATCTTGTTGACAGTGGTGGTGCTTTCCTTCCCAAGCAGGCTGATGTCTTTCCGGATAAGGAAAATTTTGGTAGAATATTCTATAACCAGGCTATAATGTCTGCTCAAGGGATTCCCCAAATTGCATTGGTGTTAGGCTCTTGCACTGCTGGTGGTGCCTATATACCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACTATTTTTTTAGCAGGGCCCCCTCTTGTTAAGGCTGCTACTGGAGAAGAAGTCTCTGCGGAGGATTTGGGAGGTGCTGCAGTACACTGCAAGACTTCGGGTGTTTCAGACTATTTTGCTCAAGATGAATTTCATGCTCTTGCACTTGGGAGGGACATCGTCAAGAATTTGCATATGGCTGGGAGAGATGTCTCGACAAATGGATTGCAAAATACAAGTTATGAGTATAAGGAGCCACTATATGATGTCAATGAACTTCGTTCTATTGCCCCTACCGATCTTAAGCAGCAGTTTGATATCCGAGAAGTGATTTCTCGCATTGTTGACGGAAGTGAATTTGATGAATTCAAGAAACTGTATGGCACTACTCTTGTAACAGGTTTTGCAAAGATCTTTGGACAGCCTGTAGGAATTATTGGAAACAATGGAATTTTATTCAATGAATCGGCTCTGAAAGGGGCTCATTTCATTGAACTATGTACTCAACGTAACATTCCCTTGGTCTTTCTTCAGAACATCACCGGATTCATGGTGGGCTCAAAATCCGAGGCAAATGGCATAGCAAAGTCAGGTGCAAAAATGGTGATGGCTGTATCTTGCGCAAAGGTACCTAAAATCACTATAATTGTTGGTGGAAGCTTTGGTGCTGGAAACTATGCAATGTGTGGTCGCGCCTATAGTCCGAACTTCATGTTCCTTTGGCCTAATGCTAGAATATCTGTGATGGGTGGTGCTCAGGCTGCTGGTGTTCTGTCTCAAATAGAGAAAGGCAATAAGAAAAAGCAAGGAATTCAGTGGAACAAGGAAGAAGAGGAGAAGTTCAAAGCGAAAGTAGTTGAGGCGTATGAGAGAGAAGGAAGTCCTTATTACTCAACGGCGAGGCTTTGGGATGATGGAATCATCGATCCAGCTGATACAAGAAAAGTGATTGGTCTATGTGTATCTGCTTCCTTGAACCGTGCGACAGAAAATACCAAATATGGTGTATTTAGAATGTGA
Protein sequence

>MsG0080048885.01.T01

MFKLIGRKSSWIPSNLLSRRELCLGALPNGGAMEHLITQLQSHVHKVLAGGGPEAVKRNSSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYEEPLPSGGVVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCVYLVDSGGAFLPKQADVFPDKENFGRIFYNQAIMSAQGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGAAVHCKTSGVSDYFAQDEFHALALGRDIVKNLHMAGRDVSTNGLQNTSYEYKEPLYDVNELRSIAPTDLKQQFDIREVISRIVDGSEFDEFKKLYGTTLVTGFAKIFGQPVGIIGNNGILFNESALKGAHFIELCTQRNIPLVFLQNITGFMVGSKSEANGIAKSGAKMVMAVSCAKVPKITIIVGGSFGAGNYAMCGRAYSPNFMFLWPNARISVMGGAQAAGVLSQIEKGNKKKQGIQWNKEEEEKFKAKVVEAYEREGSPYYSTARLWDDGIIDPADTRKVIGLCVSASLNRATENTKYGVFRM*