AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048900.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048900.01.T01 MTR_4g134670 89.689 514 16 2 1 513 1 478 0.0 947
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048900.01.T01 AT2G23390 64.858 424 141 5 41 463 39 455 0.0 579
MsG0080048900.01.T01 AT2G23390 58.562 292 113 5 41 331 39 323 5.28e-117 348

Find 69 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTTCTTCATTGTTT+TGG 0.187588 contig523end:-14253 MsG0080048900.01.T01:exon
CGCCACGTTGCAAATTTACT+TGG 0.319271 contig523end:+14406 None:intergenic
TGGACTTGAAGCATAATAAA+AGG 0.322434 contig523end:-13530 MsG0080048900.01.T01:exon
CTTCATTGTTTCTGCTATCA+AGG 0.339354 contig523end:-13706 MsG0080048900.01.T01:exon
CGTTGCAAATTTACTTGGAT+TGG 0.348020 contig523end:+14411 None:intergenic
ACTATCCTCTTCTTCTGTTA+AGG 0.370385 contig523end:-13979 MsG0080048900.01.T01:exon
CTCTTCTTCTGTTAAGGAAA+AGG 0.378605 contig523end:-13973 MsG0080048900.01.T01:exon
TAACTTAGGATAATAAGAAT+TGG 0.381000 contig523end:+13809 None:intergenic
CCTCCGCGGTTATGAAATAA+AGG 0.384557 contig523end:-13451 MsG0080048900.01.T01:intron
AGAAAAGCATGTGATAGAAA+TGG 0.417932 contig523end:+14014 None:intergenic
AAGATCCTTGGACCGGTGAC+AGG 0.427977 contig523end:+13765 None:intergenic
TCTTCTTCTGTTAAGGAAAA+GGG 0.430079 contig523end:-13972 MsG0080048900.01.T01:exon
TTCTTCGGATTCTGTTGTGC+TGG 0.436966 contig523end:+14148 None:intergenic
TGATACTGCATTCCAATCCT+AGG 0.444656 contig523end:+13594 None:intergenic
CTCAACAAGGTTTCCTCCCT+AGG 0.446994 contig523end:-13611 MsG0080048900.01.T01:exon
GTCCCCTTCACCCCTGTCAC+CGG 0.447336 contig523end:-13777 MsG0080048900.01.T01:exon
CAAGGTTTCCTCCCTAGGAT+TGG 0.453306 contig523end:-13606 MsG0080048900.01.T01:exon
TGGACCGGTGACAGGGGTGA+AGG 0.472861 contig523end:+13773 None:intergenic
CATGCATCCCATTGGGTGGA+TGG 0.473633 contig523end:+14074 None:intergenic
AAGTATGAATGAGGCATGAA+TGG 0.478706 contig523end:-14437 None:intergenic
AACGAATTCACCATAGGAAT+GGG 0.478774 contig523end:+13875 None:intergenic
CCTTAGCGACGATGTGGTGT+GGG 0.483870 contig523end:+13943 None:intergenic
TGCAACGTGGCGAGGAGTGA+GGG 0.484366 contig523end:-14395 MsG0080048900.01.T01:exon
GCATGTGCTCTTGATGCTAC+AGG 0.485050 contig523end:-14056 MsG0080048900.01.T01:exon
GGGACACAGGATTGTAACTT+AGG 0.494260 contig523end:+13795 None:intergenic
AGAAATGGATTGAACTTGTC+TGG 0.496865 contig523end:+14029 None:intergenic
CAAGAGCACATGCATCCCAT+TGG 0.498784 contig523end:+14066 None:intergenic
AAACGAATTCACCATAGGAA+TGG 0.502628 contig523end:+13874 None:intergenic
AGATATTCCATCCACCCAAT+GGG 0.507877 contig523end:-14081 MsG0080048900.01.T01:exon
AAGAGCACATGCATCCCATT+GGG 0.508867 contig523end:+14067 None:intergenic
GGACCGGTGACAGGGGTGAA+GGG 0.511776 contig523end:+13774 None:intergenic
GGATTGGAATGCAGTATCAC+TGG 0.516565 contig523end:-13590 MsG0080048900.01.T01:exon
CAGATATTCCATCCACCCAA+TGG 0.533439 contig523end:-14082 MsG0080048900.01.T01:exon
AGTAAATTTGCAACGTGGCG+AGG 0.533665 contig523end:-14403 MsG0080048900.01.T01:exon
GACCGGTGACAGGGGTGAAG+GGG 0.538489 contig523end:+13775 None:intergenic
TATCTCAAGACCCATTCCTA+TGG 0.542512 contig523end:-13885 MsG0080048900.01.T01:exon
TCACCCCTGTCACCGGTCCA+AGG 0.547400 contig523end:-13770 MsG0080048900.01.T01:exon
TCCTTAGCGACGATGTGGTG+TGG 0.549897 contig523end:+13942 None:intergenic
GTGTTACGAAGTAAGATCCT+TGG 0.554201 contig523end:+13753 None:intergenic
AAAATTAGTATAGTTGCGGT+TGG 0.560859 contig523end:+13566 None:intergenic
AGATCCTTGGACCGGTGACA+GGG 0.562433 contig523end:+13766 None:intergenic
CCCACACCACATCGTCGCTA+AGG 0.564713 contig523end:-13943 MsG0080048900.01.T01:exon
CATCAAAATTAGTATAGTTG+CGG 0.572132 contig523end:+13562 None:intergenic
GCAACGTGGCGAGGAGTGAG+GGG 0.573897 contig523end:-14394 MsG0080048900.01.T01:exon
TTGCAACGTGGCGAGGAGTG+AGG 0.574434 contig523end:-14396 MsG0080048900.01.T01:exon
GAAGATTTGCGATGATGAGA+CGG 0.577972 contig523end:+14320 None:intergenic
GAATGGGTCTTGAGATAGAG+AGG 0.593847 contig523end:+13891 None:intergenic
GACAGGGGTGAAGGGGACAC+AGG 0.595023 contig523end:+13782 None:intergenic
CTTCTGTTAAGGAAAAGGGA+TGG 0.599556 contig523end:-13968 MsG0080048900.01.T01:exon
GATACTGCATTCCAATCCTA+GGG 0.601582 contig523end:+13595 None:intergenic
ACGAAGTAAGATCCTTGGAC+CGG 0.613289 contig523end:+13758 None:intergenic
AGCACATGCATCCCATTGGG+TGG 0.614598 contig523end:+14070 None:intergenic
TTTCAGAGGGAAAAGTGACA+TGG 0.623878 contig523end:+13652 None:intergenic
GTGATGGCAGCAGTAGCGAT+AGG 0.633008 contig523end:-14371 MsG0080048900.01.T01:exon
GAATATCCTTAGCGACGATG+TGG 0.635094 contig523end:+13937 None:intergenic
TGGCACAAATTCACTCAACA+AGG 0.637208 contig523end:-13624 MsG0080048900.01.T01:exon
CAGCAGTAGCGATAGGAGTG+AGG 0.642392 contig523end:-14364 MsG0080048900.01.T01:exon
GATACGTCAAGAGCGCAAGA+AGG 0.642401 contig523end:-13502 MsG0080048900.01.T01:exon
CAACGTGGCGAGGAGTGAGG+GGG 0.644733 contig523end:-14393 MsG0080048900.01.T01:exon
GATCCTTGGACCGGTGACAG+GGG 0.654306 contig523end:+13767 None:intergenic
CTTAGCGACGATGTGGTGTG+GGG 0.656713 contig523end:+13944 None:intergenic
TTGATTATGAAACGCCTCCG+CGG 0.657077 contig523end:-13465 MsG0080048900.01.T01:exon
AGAGGGAAAAGTGACATGGA+AGG 0.667089 contig523end:+13656 None:intergenic
GAAGGAAGAAAGTTGAGACA+TGG 0.667244 contig523end:+13674 None:intergenic
CCTTTATTTCATAACCGCGG+AGG 0.676519 contig523end:+13451 None:intergenic
ATACCTTTATTTCATAACCG+CGG 0.679434 contig523end:+13448 None:intergenic
ACTGCATTCCAATCCTAGGG+AGG 0.691555 contig523end:+13598 None:intergenic
TGTGCTCTTGATGCTACAGG+AGG 0.695186 contig523end:-14053 MsG0080048900.01.T01:exon
ATCCAAGTAAATTTGCAACG+TGG 0.745608 contig523end:-14408 MsG0080048900.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAATAGAACAAAAT+GGG + contig523end:12649-12668 None:intergenic 10.0%
!!! ATTTTGTTCTATTTTTAATA+GGG - contig523end:12649-12668 MsG0080048900.01.T01:intron 10.0%
!! AAACTCAAAAATTATATTGA+AGG - contig523end:13559-13578 MsG0080048900.01.T01:exon 15.0%
!! AAATAATTCAACAATATTTG+AGG + contig523end:12281-12300 None:intergenic 15.0%
!! CTATTAAAAATAGAACAAAA+TGG + contig523end:12650-12669 None:intergenic 15.0%
!!! AATGGTTTTATAATTATTAC+TGG - contig523end:14143-14162 MsG0080048900.01.T01:exon 15.0%
!!! AATTTTGTATTACAATATTG+TGG + contig523end:11971-11990 None:intergenic 15.0%
!!! ATGGTTTTATAATTATTACT+GGG - contig523end:14144-14163 MsG0080048900.01.T01:exon 15.0%
!!! CATTTTGTTCTATTTTTAAT+AGG - contig523end:12648-12667 MsG0080048900.01.T01:intron 15.0%
!!! TAAATCATTTTATCAAATAG+AGG - contig523end:13089-13108 MsG0080048900.01.T01:intron 15.0%
!!! TATTTTATTGCAAAAACTTT+AGG - contig523end:11670-11689 MsG0080048900.01.T01:intron 15.0%
!!! TTATTTTTAGAGATTTTCAT+AGG - contig523end:11783-11802 MsG0080048900.01.T01:intron 15.0%
!! ACAAGAAAAAAAAAATTCCA+CGG - contig523end:11169-11188 MsG0080048900.01.T01:intron 20.0%
!! AGAAACTATTAGTAAAGATT+TGG - contig523end:13246-13265 MsG0080048900.01.T01:intron 20.0%
!! AGATTTGGAAATTAATTAGT+TGG - contig523end:13261-13280 MsG0080048900.01.T01:intron 20.0%
!! ATTATGTAGTTGAAATTGTT+TGG - contig523end:11544-11563 MsG0080048900.01.T01:CDS 20.0%
!! TAACTTAGGATAATAAGAAT+TGG + contig523end:10624-10643 None:intergenic 20.0%
!! TATTCCATAAATGATTTAGA+TGG + contig523end:12378-12397 None:intergenic 20.0%
!! TATTCCATCTAAATCATTTA+TGG - contig523end:12371-12390 MsG0080048900.01.T01:CDS 20.0%
!! TCAAAAATTATATTGAAGGA+GGG - contig523end:13563-13582 MsG0080048900.01.T01:exon 20.0%
!!! AAAAACTTTAGGATGTATTT+GGG - contig523end:11681-11700 MsG0080048900.01.T01:intron 20.0%
!!! AATCTTATCTTTTTCTTCTT+CGG + contig523end:10300-10319 None:intergenic 20.0%
!!! CATTTTATATTTCTGCATTT+TGG - contig523end:12813-12832 MsG0080048900.01.T01:intron 20.0%
!!! GAACAATCTCTAAAAAAATA+CGG - contig523end:13681-13700 MsG0080048900.01.T01:exon 20.0%
!!! TTATTATTTACATTTTGGCT+GGG - contig523end:12299-12318 MsG0080048900.01.T01:CDS 20.0%
!!! TTTATTATTTACATTTTGGC+TGG - contig523end:12298-12317 MsG0080048900.01.T01:CDS 20.0%
!!! TTTTCTTTTTCCATTATTTG+AGG + contig523end:11392-11411 None:intergenic 20.0%
! AAAAATGGATAGTAAGTTTG+TGG + contig523end:12209-12228 None:intergenic 25.0%
! AAAAGTTTGCATTCTTTCAA+TGG - contig523end:14125-14144 MsG0080048900.01.T01:exon 25.0%
! AAAGTCTAAACCTCAAATAA+TGG - contig523end:11379-11398 MsG0080048900.01.T01:intron 25.0%
! AATCTTCATCAATAAGGTAA+TGG + contig523end:12956-12975 None:intergenic 25.0%
! ACTATAGCATTATTCTCTAA+TGG + contig523end:12336-12355 None:intergenic 25.0%
! ACTTCATTGTAATCTCTTAA+AGG + contig523end:11651-11670 None:intergenic 25.0%
! ATAAAAATGAGAGTAAGCAT+TGG + contig523end:10597-10616 None:intergenic 25.0%
! ATATGAAAACACTGAAACAT+TGG + contig523end:11526-11545 None:intergenic 25.0%
! CATCAAAATTAGTATAGTTG+CGG + contig523end:10871-10890 None:intergenic 25.0%
! CTCAAAAATTATATTGAAGG+AGG - contig523end:13562-13581 MsG0080048900.01.T01:exon 25.0%
! GAGAAGTTATAACTACATTA+AGG + contig523end:13941-13960 None:intergenic 25.0%
! GATACAAAGTGAAAACAATT+TGG + contig523end:11763-11782 None:intergenic 25.0%
! GTAGTGTCTAAATATTAGTA+TGG - contig523end:12003-12022 MsG0080048900.01.T01:intron 25.0%
! TAACTTCTCATCTAATCAAA+AGG - contig523end:13952-13971 MsG0080048900.01.T01:exon 25.0%
! TAATTAGTTGGATCGAAATA+TGG - contig523end:13273-13292 MsG0080048900.01.T01:intron 25.0%
! TCCTAAAATCTTCATCAATA+AGG + contig523end:12962-12981 None:intergenic 25.0%
! TCTATTTGCTTTCTAATTAC+TGG - contig523end:11849-11868 MsG0080048900.01.T01:intron 25.0%
! TTAACTTATAGACGGTATTT+GGG - contig523end:12529-12548 MsG0080048900.01.T01:CDS 25.0%
! TTTGTCTCTACAAAATCTAT+AGG + contig523end:13204-13223 None:intergenic 25.0%
!! ACCTTATTGATGAAGATTTT+AGG - contig523end:12958-12977 MsG0080048900.01.T01:intron 25.0%
!! ATGGAATAAACTTTTCAGTT+TGG - contig523end:12390-12409 MsG0080048900.01.T01:CDS 25.0%
!! TAGAAAGTATATACACACAT+TGG - contig523end:14312-14331 MsG0080048900.01.T01:exon 25.0%
!! TATTTTGCATCATGTCTATA+CGG - contig523end:11002-11021 MsG0080048900.01.T01:CDS 25.0%
!! TTAGAGATTTTCATAGGAAA+TGG - contig523end:11789-11808 MsG0080048900.01.T01:intron 25.0%
!!! AATGCTTACTCTCATTTTTA+TGG - contig523end:10596-10615 MsG0080048900.01.T01:intron 25.0%
!!! AATTCGTTTTTGATCATTCT+TGG - contig523end:10570-10589 MsG0080048900.01.T01:intron 25.0%
!!! ATTCGTTTTTGATCATTCTT+GGG - contig523end:10571-10590 MsG0080048900.01.T01:intron 25.0%
!!! CAAAAACTTTAGGATGTATT+TGG - contig523end:11680-11699 MsG0080048900.01.T01:intron 25.0%
!!! GTTGTTTTTGTTTGTGTTAA+AGG - contig523end:13860-13879 MsG0080048900.01.T01:exon 25.0%
!!! TAATTTTGATGACTTCTTGA+TGG - contig523end:10880-10899 MsG0080048900.01.T01:intron 25.0%
!!! TATTTCGTTTTTGTATTGGA+AGG - contig523end:11874-11893 MsG0080048900.01.T01:intron 25.0%
!!! TCTTTTTTTTGTGATGGTAA+AGG - contig523end:13348-13367 MsG0080048900.01.T01:intron 25.0%
!!! TTCTCTTCTTTTTTTTGTGA+TGG - contig523end:13342-13361 MsG0080048900.01.T01:intron 25.0%
!!! TTTTGAAGCATGTTATTATC+AGG - contig523end:12232-12251 MsG0080048900.01.T01:CDS 25.0%
!!! TTTTTGTTTGTGTTAAAGGT+GGG - contig523end:13864-13883 MsG0080048900.01.T01:exon 25.0%
AAAAAAAAATTCCACGGTGT+TGG - contig523end:11175-11194 MsG0080048900.01.T01:intron 30.0%
AAAATTAGTATAGTTGCGGT+TGG + contig523end:10867-10886 None:intergenic 30.0%
AAAGTGAACTTAGAAAGACA+AGG + contig523end:13053-13072 None:intergenic 30.0%
AATAAACCCCATATTCAAGT+TGG + contig523end:13510-13529 None:intergenic 30.0%
AATCTTAAAACAGTAGAAGC+AGG - contig523end:12873-12892 MsG0080048900.01.T01:intron 30.0%
AGCGTAATTTGATCCATATA+CGG - contig523end:13314-13333 MsG0080048900.01.T01:intron 30.0%
AGTTAGTTAAAGCCAAATGA+AGG - contig523end:11276-11295 MsG0080048900.01.T01:intron 30.0%
ATAGAACAAAATGGGAGATA+AGG + contig523end:12641-12660 None:intergenic 30.0%
ATCAAAAACGAATTCACCAT+AGG + contig523end:10564-10583 None:intergenic 30.0%
ATGCTTCCCTAATAGTAAAT+AGG + contig523end:12796-12815 None:intergenic 30.0%
CAAAGGCCTATTTACTATTA+GGG - contig523end:12787-12806 MsG0080048900.01.T01:intron 30.0%
CATGCTTCAAAATGCAAAAA+TGG + contig523end:12224-12243 None:intergenic 30.0%
CTAAATATTAGTATGGCTAC+TGG - contig523end:12010-12029 MsG0080048900.01.T01:intron 30.0%
CTATACAAGACATGACAAAT+TGG + contig523end:11091-11110 None:intergenic 30.0%
CTCTACAAAATCTATAGGTA+AGG + contig523end:13199-13218 None:intergenic 30.0%
GAAGAGAAATATTCCGTATA+TGG + contig523end:13330-13349 None:intergenic 30.0%
GATAGTCATAACTAGGATAT+AGG + contig523end:13909-13928 None:intergenic 30.0%
GTAAACTTCTGTTGAACAAA+TGG - contig523end:11062-11081 MsG0080048900.01.T01:CDS 30.0%
GTTAACTTATAGACGGTATT+TGG - contig523end:12528-12547 MsG0080048900.01.T01:CDS 30.0%
GTTAGTTAAAGCCAAATGAA+GGG - contig523end:11277-11296 MsG0080048900.01.T01:intron 30.0%
TAAGTTCTTAAGCCAACAAA+TGG + contig523end:14052-14071 None:intergenic 30.0%
TCAAAGGCCTATTTACTATT+AGG - contig523end:12786-12805 MsG0080048900.01.T01:intron 30.0%
TCGTTCAGATGTTTAATGAT+TGG + contig523end:11431-11450 None:intergenic 30.0%
TCTTCTTCTGTTAAGGAAAA+GGG - contig523end:10458-10477 MsG0080048900.01.T01:intron 30.0%
TGGACTTGAAGCATAATAAA+AGG - contig523end:10900-10919 MsG0080048900.01.T01:intron 30.0%
TGTGTGTATATACTTTCTAC+AGG + contig523end:14311-14330 None:intergenic 30.0%
TTAATCATTAAAGCCAAGCT+GGG - contig523end:13814-13833 MsG0080048900.01.T01:exon 30.0%
TTATGCTTACTTTGCAAGTT+TGG - contig523end:13427-13446 MsG0080048900.01.T01:intron 30.0%
TTTGTCATGTCTTGTATAGT+AGG - contig523end:11092-11111 MsG0080048900.01.T01:intron 30.0%
! AGAAAAGCATGTGATAGAAA+TGG + contig523end:10419-10438 None:intergenic 30.0%
! ATAAACCCCATATTCAAGTT+GGG + contig523end:13509-13528 None:intergenic 30.0%
! ATACCTTTATTTCATAACCG+CGG + contig523end:10985-11004 None:intergenic 30.0%
! CAATGCTTCTTCATTGTTTT+GGG - contig523end:10178-10197 MsG0080048900.01.T01:CDS 30.0%
! CTTCATAGTTCTATGTTTGT+CGG - contig523end:11138-11157 MsG0080048900.01.T01:intron 30.0%
! TCAATGCTTCTTCATTGTTT+TGG - contig523end:10177-10196 MsG0080048900.01.T01:CDS 30.0%
!! AATGCTTCTTCATTGTTTTG+GGG - contig523end:10179-10198 MsG0080048900.01.T01:intron 30.0%
!! GGCATATTTCGTTTTTGTAT+TGG - contig523end:11870-11889 MsG0080048900.01.T01:intron 30.0%
!! GTTTTTGTTTGTGTTAAAGG+TGG - contig523end:13863-13882 MsG0080048900.01.T01:exon 30.0%
!! TTTGAGTTTCTCCATTTTGA+GGG + contig523end:13548-13567 None:intergenic 30.0%
!!! AGGAGAAACATGCTATTTTT+TGG + contig523end:12715-12734 None:intergenic 30.0%
!!! AGGGAATTTTTTCATGAGAT+GGG - contig523end:12065-12084 MsG0080048900.01.T01:intron 30.0%
!!! TTTTGAGTTTCTCCATTTTG+AGG + contig523end:13549-13568 None:intergenic 30.0%
AAACGAATTCACCATAGGAA+TGG + contig523end:10559-10578 None:intergenic 35.0%
AACACAAAATCCCCTCAAAA+TGG - contig523end:13534-13553 MsG0080048900.01.T01:exon 35.0%
AACGAATTCACCATAGGAAT+GGG + contig523end:10558-10577 None:intergenic 35.0%
AAGTATATACACACATTGGC+AGG - contig523end:14316-14335 MsG0080048900.01.T01:exon 35.0%
AATGGTGAAACAAACCAAAC+AGG - contig523end:11807-11826 MsG0080048900.01.T01:intron 35.0%
ACACAGCATGTTCTAATGAA+TGG - contig523end:11231-11250 MsG0080048900.01.T01:intron 35.0%
ACTATCCTCTTCTTCTGTTA+AGG - contig523end:10451-10470 MsG0080048900.01.T01:intron 35.0%
AGTATATACACACATTGGCA+GGG - contig523end:14317-14336 MsG0080048900.01.T01:exon 35.0%
ATAGAATGCATCATAACCCA+AGG + contig523end:11834-11853 None:intergenic 35.0%
ATAGTCTCCCAACTTGAATA+TGG - contig523end:13499-13518 MsG0080048900.01.T01:exon 35.0%
ATCAGTCGATAGTCATAACT+AGG + contig523end:13916-13935 None:intergenic 35.0%
ATCAGTTGTGTTCCTGTAAA+AGG + contig523end:11924-11943 None:intergenic 35.0%
ATCCAAGTAAATTTGCAACG+TGG - contig523end:10022-10041 MsG0080048900.01.T01:exon 35.0%
ATCTCCTCCGATAAGATTTA+GGG + contig523end:12156-12175 None:intergenic 35.0%
ATGTAACACCAAACAATCAG+TGG - contig523end:11465-11484 MsG0080048900.01.T01:CDS 35.0%
CAAACAAAAACAACACATCC+TGG + contig523end:13854-13873 None:intergenic 35.0%
CATGAGATGGGATCAAAAAT+GGG - contig523end:12077-12096 MsG0080048900.01.T01:intron 35.0%
CGTTGCAAATTTACTTGGAT+TGG + contig523end:10022-10041 None:intergenic 35.0%
CTCTTCTTCTGTTAAGGAAA+AGG - contig523end:10457-10476 MsG0080048900.01.T01:intron 35.0%
CTTAATCATTAAAGCCAAGC+TGG - contig523end:13813-13832 MsG0080048900.01.T01:exon 35.0%
GATTAAGGAGTAATCCTATC+AGG + contig523end:13800-13819 None:intergenic 35.0%
GTAAAGGCTTACTTTGCAAT+GGG - contig523end:13364-13383 MsG0080048900.01.T01:intron 35.0%
GTAGATGCTAGAGTTTCAAA+AGG - contig523end:11343-11362 MsG0080048900.01.T01:intron 35.0%
GTTATTATCAGGTTCACACT+TGG - contig523end:12243-12262 MsG0080048900.01.T01:CDS 35.0%
TAGAATGCATCATAACCCAA+GGG + contig523end:11833-11852 None:intergenic 35.0%
TAGTCTCCCAACTTGAATAT+GGG - contig523end:13500-13519 MsG0080048900.01.T01:exon 35.0%
TATCTCCTCCGATAAGATTT+AGG + contig523end:12157-12176 None:intergenic 35.0%
TATTGTTGCTGAAGACAATG+AGG - contig523end:12115-12134 MsG0080048900.01.T01:intron 35.0%
TCATGAGATGGGATCAAAAA+TGG - contig523end:12076-12095 MsG0080048900.01.T01:intron 35.0%
TCATGTCTTGTATAGTAGGA+GGG - contig523end:11096-11115 MsG0080048900.01.T01:intron 35.0%
TGGGAGATAAGGTAAAAATG+TGG + contig523end:12630-12649 None:intergenic 35.0%
TGTAACACCAAACAATCAGT+GGG - contig523end:11466-11485 MsG0080048900.01.T01:CDS 35.0%
TGTATGTACAGTTGAATCAG+TGG - contig523end:14407-14426 MsG0080048900.01.T01:exon 35.0%
TGTCACATTATCAAGTGCTT+TGG + contig523end:14220-14239 None:intergenic 35.0%
TGTGGGTGTTAACTTATAGA+CGG - contig523end:12521-12540 MsG0080048900.01.T01:CDS 35.0%
! ATTCCTTCTACACCTTTTAC+AGG - contig523end:11909-11928 MsG0080048900.01.T01:intron 35.0%
! CTTTTCCTTAACAGAAGAAG+AGG + contig523end:10459-10478 None:intergenic 35.0%
! TAGAGTTTCAAAAGGTGCAA+TGG - contig523end:11351-11370 MsG0080048900.01.T01:intron 35.0%
! TTAAGCACAGTAGTGCATTT+TGG - contig523end:14091-14110 MsG0080048900.01.T01:exon 35.0%
! TTCTATTCCTAGAGAAGCAT+TGG + contig523end:11499-11518 None:intergenic 35.0%
! TTGAGTTTCTCCATTTTGAG+GGG + contig523end:13547-13566 None:intergenic 35.0%
! TTTAGTTCGTGAATCTTCTC+AGG - contig523end:12998-13017 MsG0080048900.01.T01:intron 35.0%
!! AGAAATGGATTGAACTTGTC+TGG + contig523end:10404-10423 None:intergenic 35.0%
!! CAGCTTGGCTTTAATGATTA+AGG + contig523end:13815-13834 None:intergenic 35.0%
!! CTTCATTGTTTCTGCTATCA+AGG - contig523end:10724-10743 MsG0080048900.01.T01:intron 35.0%
!! TTTAGGATGTATTTGGGTTG+AGG - contig523end:11687-11706 MsG0080048900.01.T01:intron 35.0%
!!! ATTGTTTTGGGGATCTTCTA+AGG - contig523end:10190-10209 MsG0080048900.01.T01:intron 35.0%
!!! GAGGGAATTTTTTCATGAGA+TGG - contig523end:12064-12083 MsG0080048900.01.T01:intron 35.0%
AAAAATTCCCTCGTCAGGAA+AGG + contig523end:12056-12075 None:intergenic 40.0%
AAAGTGAACTTCTGTCAGAG+AGG + contig523end:11624-11643 None:intergenic 40.0%
AAGGAGAGTAGATCATCAGA+TGG + contig523end:13180-13199 None:intergenic 40.0%
AGATATTCCATCCACCCAAT+GGG - contig523end:10349-10368 MsG0080048900.01.T01:intron 40.0%
AGTCTCCCAACTTGAATATG+GGG - contig523end:13501-13520 MsG0080048900.01.T01:exon 40.0%
AGTTCTATGTTTGTCGGTGT+TGG - contig523end:11144-11163 MsG0080048900.01.T01:intron 40.0%
ATAACAAGCTTCACCTGTAC+AGG + contig523end:14249-14268 None:intergenic 40.0%
ATCGGAGGAGATACTTTGTT+TGG - contig523end:12164-12183 MsG0080048900.01.T01:intron 40.0%
ATGAAACTCTTGCGTGATTC+TGG - contig523end:14267-14286 MsG0080048900.01.T01:exon 40.0%
ATTAGAACATGCTGTGTCAG+TGG + contig523end:11228-11247 None:intergenic 40.0%
CATCAAAGCCACACTGAAAA+AGG + contig523end:12503-12522 None:intergenic 40.0%
CATGAAAAAATTCCCTCGTC+AGG + contig523end:12061-12080 None:intergenic 40.0%
CTAAATTAGCCCACCCAAAT+TGG - contig523end:12434-12453 MsG0080048900.01.T01:intron 40.0%
CTAGCATCTACTCTGCATAT+GGG + contig523end:11334-11353 None:intergenic 40.0%
CTCGATTAGAATTGAAGGCA+AGG - contig523end:14020-14039 MsG0080048900.01.T01:exon 40.0%
CTCTGCATATGGGTCAAAAT+TGG + contig523end:11324-11343 None:intergenic 40.0%
CTTACTTTGCAAGTTTGGAG+GGG - contig523end:13432-13451 MsG0080048900.01.T01:intron 40.0%
CTTCTGTTAAGGAAAAGGGA+TGG - contig523end:10462-10481 MsG0080048900.01.T01:intron 40.0%
CTTGCCTTCAATTCTAATCG+AGG + contig523end:14022-14041 None:intergenic 40.0%
GAAGATTTGCGATGATGAGA+CGG + contig523end:10113-10132 None:intergenic 40.0%
GAAGGAAGAAAGTTGAGACA+TGG + contig523end:10759-10778 None:intergenic 40.0%
GAAGTTACCAATGCTTCTCT+AGG - contig523end:11489-11508 MsG0080048900.01.T01:CDS 40.0%
GATACTGCATTCCAATCCTA+GGG + contig523end:10838-10857 None:intergenic 40.0%
GCAAGGATGTAACCATTTGT+TGG - contig523end:14037-14056 MsG0080048900.01.T01:exon 40.0%
GCTGTAATTCACCCTTCATT+TGG + contig523end:11291-11310 None:intergenic 40.0%
GCTTACTTTGCAAGTTTGGA+GGG - contig523end:13431-13450 MsG0080048900.01.T01:intron 40.0%
GCTTACTTTGCAATGGGAAA+AGG - contig523end:13370-13389 MsG0080048900.01.T01:intron 40.0%
GGTAAAGGCTTACTTTGCAA+TGG - contig523end:13363-13382 MsG0080048900.01.T01:intron 40.0%
GTAACACCAAACAATCAGTG+GGG - contig523end:11467-11486 MsG0080048900.01.T01:CDS 40.0%
GTCATGTCTTGTATAGTAGG+AGG - contig523end:11095-11114 MsG0080048900.01.T01:intron 40.0%
GTGTTACGAAGTAAGATCCT+TGG + contig523end:10680-10699 None:intergenic 40.0%
TATCTCAAGACCCATTCCTA+TGG - contig523end:10545-10564 MsG0080048900.01.T01:intron 40.0%
TCAGGAGACAAAACCAACTA+CGG + contig523end:13782-13801 None:intergenic 40.0%
TCTAGCATCTACTCTGCATA+TGG + contig523end:11335-11354 None:intergenic 40.0%
TGATACTGCATTCCAATCCT+AGG + contig523end:10839-10858 None:intergenic 40.0%
TGCTTACTTTGCAAGTTTGG+AGG - contig523end:13430-13449 MsG0080048900.01.T01:intron 40.0%
TGGCACAAATTCACTCAACA+AGG - contig523end:10806-10825 MsG0080048900.01.T01:intron 40.0%
TTCGTGAATCTTCTCAGGTA+TGG - contig523end:13003-13022 MsG0080048900.01.T01:intron 40.0%
TTCTGATATATCCAACACCG+TGG + contig523end:11189-11208 None:intergenic 40.0%
TTTCAGAGGGAAAAGTGACA+TGG + contig523end:10781-10800 None:intergenic 40.0%
! ACTGCAGTGCGACTTTTAAA+AGG + contig523end:12735-12754 None:intergenic 40.0%
! CTCTGACAGAAGTTCACTTT+TGG - contig523end:11624-11643 MsG0080048900.01.T01:intron 40.0%
! GTTCCTGTAAAAGGTGTAGA+AGG + contig523end:11915-11934 None:intergenic 40.0%
! TAACTTCCCCACTGATTGTT+TGG + contig523end:11476-11495 None:intergenic 40.0%
! TATACTTTAGTTCCGCCACT+TGG + contig523end:12607-12626 None:intergenic 40.0%
! TCGGAGGAGATACTTTGTTT+GGG - contig523end:12165-12184 MsG0080048900.01.T01:intron 40.0%
! TGTGACATTTTTGCCTGTAC+AGG - contig523end:14233-14252 MsG0080048900.01.T01:exon 40.0%
!! ACAGTAGTTGGTAGCATGAA+TGG + contig523end:14193-14212 None:intergenic 40.0%
!! CTTGCTTGTTGTTGTTGTGA+TGG - contig523end:13393-13412 MsG0080048900.01.T01:intron 40.0%
!! TGCTTTGGAATCACAGTAGT+TGG + contig523end:14205-14224 None:intergenic 40.0%
!! TTTCAGTGTGGCTTTGATGT+GGG - contig523end:12504-12523 MsG0080048900.01.T01:CDS 40.0%
!!! AGTTGGTTTTGTCTCCTGAT+AGG - contig523end:13783-13802 MsG0080048900.01.T01:exon 40.0%
!!! GCATTTTGGTTTGACATCAC+AGG - contig523end:12827-12846 MsG0080048900.01.T01:intron 40.0%
!!! TTTACATTTTGGCTGGGCTT+TGG - contig523end:12305-12324 MsG0080048900.01.T01:CDS 40.0%
!!! TTTTCAGTGTGGCTTTGATG+TGG - contig523end:12503-12522 MsG0080048900.01.T01:intron 40.0%
AAACAAACCAAACAGGCCCT+TGG - contig523end:11814-11833 MsG0080048900.01.T01:intron 45.0%
AACAAACCAAACAGGCCCTT+GGG - contig523end:11815-11834 MsG0080048900.01.T01:intron 45.0%
ACGAAGTAAGATCCTTGGAC+CGG + contig523end:10675-10694 None:intergenic 45.0%
AGAGGGAAAAGTGACATGGA+AGG + contig523end:10777-10796 None:intergenic 45.0%
AGGCCTTTGACAGAAATCAC+AGG + contig523end:12776-12795 None:intergenic 45.0%
AGTAAATTTGCAACGTGGCG+AGG - contig523end:10027-10046 MsG0080048900.01.T01:exon 45.0%
CAGATATTCCATCCACCCAA+TGG - contig523end:10348-10367 MsG0080048900.01.T01:intron 45.0%
CCTCCGCGGTTATGAAATAA+AGG - contig523end:10979-10998 MsG0080048900.01.T01:CDS 45.0%
CGCCACGTTGCAAATTTACT+TGG + contig523end:10027-10046 None:intergenic 45.0%
CTGTCAGAGAGGTAAACATC+AGG + contig523end:11613-11632 None:intergenic 45.0%
GAATATCCTTAGCGACGATG+TGG + contig523end:10496-10515 None:intergenic 45.0%
GAATCGAACCTGAGACCTTA+AGG - contig523end:12466-12485 MsG0080048900.01.T01:intron 45.0%
GAATGGGTCTTGAGATAGAG+AGG + contig523end:10542-10561 None:intergenic 45.0%
GACAATGAGGAACTAGTAGC+AGG - contig523end:12128-12147 MsG0080048900.01.T01:intron 45.0%
GACCCTGTGATTTCTGTCAA+AGG - contig523end:12770-12789 MsG0080048900.01.T01:intron 45.0%
GAGAGTAGATCATCAGATGG+AGG + contig523end:13177-13196 None:intergenic 45.0%
GAGGATAGTCAGATCACCAA+AGG + contig523end:13158-13177 None:intergenic 45.0%
GATTCTGGTCCTTTCAAGGA+AGG - contig523end:14282-14301 MsG0080048900.01.T01:exon 45.0%
GCAGCCTCGATTAGAATTGA+AGG - contig523end:14015-14034 MsG0080048900.01.T01:exon 45.0%
GCAGGTGCCCTAAATCTTAT+CGG - contig523end:12146-12165 MsG0080048900.01.T01:intron 45.0%
GCTCTGTTTGTGAGTTTGGA+GGG + contig523end:13760-13779 None:intergenic 45.0%
GGATTGGAATGCAGTATCAC+TGG - contig523end:10840-10859 MsG0080048900.01.T01:intron 45.0%
GGCCTTTGACAGAAATCACA+GGG + contig523end:12775-12794 None:intergenic 45.0%
GGGACACAGGATTGTAACTT+AGG + contig523end:10638-10657 None:intergenic 45.0%
GGGTATGAGGAAGGAAGTAA+GGG - contig523end:13462-13481 MsG0080048900.01.T01:exon 45.0%
GGTGAACATAAGATTGAGCG+TGG - contig523end:12903-12922 MsG0080048900.01.T01:intron 45.0%
GTTTGTGAGTTTGGAGGGTA+GGG + contig523end:13755-13774 None:intergenic 45.0%
TAATCGAGGCTGCAAAGTGA+AGG + contig523end:14008-14027 None:intergenic 45.0%
TACAGGACACCTTCCTTGAA+AGG + contig523end:14294-14313 None:intergenic 45.0%
TACGGCTCTGTTTGTGAGTT+TGG + contig523end:13764-13783 None:intergenic 45.0%
TCTAGATCTTCCTCTGCCTT+TGG - contig523end:13139-13158 MsG0080048900.01.T01:intron 45.0%
TGGCAGCTATATGTTGTCAC+TGG + contig523end:12936-12955 None:intergenic 45.0%
TGGGTATGAGGAAGGAAGTA+AGG - contig523end:13461-13480 MsG0080048900.01.T01:exon 45.0%
TGTATTGGAAGGCAAAGCAC+TGG - contig523end:11885-11904 MsG0080048900.01.T01:intron 45.0%
TGTTTGTGAGTTTGGAGGGT+AGG + contig523end:13756-13775 None:intergenic 45.0%
TTCTCTTCAGTTCCACCAAG+TGG - contig523end:12589-12608 MsG0080048900.01.T01:intron 45.0%
TTCTTCGGATTCTGTTGTGC+TGG + contig523end:10285-10304 None:intergenic 45.0%
TTGATTATGAAACGCCTCCG+CGG - contig523end:10965-10984 MsG0080048900.01.T01:intron 45.0%
! AAGAGCACATGCATCCCATT+GGG + contig523end:10366-10385 None:intergenic 45.0%
! ATACTTTGTTTGGGCGCCTA+TGG - contig523end:12174-12193 MsG0080048900.01.T01:intron 45.0%
! CCTTTATTTCATAACCGCGG+AGG + contig523end:10982-11001 None:intergenic 45.0%
! GTATTGGAAGGCAAAGCACT+GGG - contig523end:11886-11905 MsG0080048900.01.T01:intron 45.0%
! TACTTTGTTTGGGCGCCTAT+GGG - contig523end:12175-12194 MsG0080048900.01.T01:intron 45.0%
! TGTCAGTGGAAAAAGTGCAC+TGG + contig523end:11214-11233 None:intergenic 45.0%
!! CTACTGGTCTTTGACAGATG+GGG - contig523end:12026-12045 MsG0080048900.01.T01:intron 45.0%
!! CTTTTCCCTCTGAAAACGAG+TGG - contig523end:10786-10805 MsG0080048900.01.T01:intron 45.0%
!! GCTACTGGTCTTTGACAGAT+GGG - contig523end:12025-12044 MsG0080048900.01.T01:intron 45.0%
!! TTGTGCCACTCGTTTTCAGA+GGG + contig523end:10794-10813 None:intergenic 45.0%
!! TTTGTGCCACTCGTTTTCAG+AGG + contig523end:10795-10814 None:intergenic 45.0%
!!! AGCACACTCCTTTTTCAGTG+TGG - contig523end:12492-12511 MsG0080048900.01.T01:intron 45.0%
!!! ATTATTTATTATTTACATTT+TGG - contig523end:12294-12313 MsG0080048900.01.T01:CDS 5.0%
AACAGTAGAAGCAGGAGCTC+AGG - contig523end:12881-12900 MsG0080048900.01.T01:intron 50.0%
AAGTTTGGAGGGGAGGCTTT+GGG - contig523end:13442-13461 MsG0080048900.01.T01:intron 50.0%
ACAGTAGAAGCAGGAGCTCA+GGG - contig523end:12882-12901 MsG0080048900.01.T01:intron 50.0%
ACTCACAACAGTTCCCAGCT+TGG + contig523end:13830-13849 None:intergenic 50.0%
ACTGCATTCCAATCCTAGGG+AGG + contig523end:10835-10854 None:intergenic 50.0%
ACTTTGCAAGTTTGGAGGGG+AGG - contig523end:13435-13454 MsG0080048900.01.T01:intron 50.0%
AGTCAGATCACCAAAGGCAG+AGG + contig523end:13152-13171 None:intergenic 50.0%
CAAGGTTTCCTCCCTAGGAT+TGG - contig523end:10824-10843 MsG0080048900.01.T01:intron 50.0%
CTCAACAAGGTTTCCTCCCT+AGG - contig523end:10819-10838 MsG0080048900.01.T01:intron 50.0%
CTCACAAACAGAGCCGTAGT+TGG - contig523end:13766-13785 MsG0080048900.01.T01:exon 50.0%
GACAGAAATCACAGGGTCAC+AGG + contig523end:12768-12787 None:intergenic 50.0%
GCATGTGCTCTTGATGCTAC+AGG - contig523end:10374-10393 MsG0080048900.01.T01:intron 50.0%
GCGTGATTCTGGTCCTTTCA+AGG - contig523end:14278-14297 MsG0080048900.01.T01:exon 50.0%
GGCTCTGTTTGTGAGTTTGG+AGG + contig523end:13761-13780 None:intergenic 50.0%
GGTGCCCTAAATCTTATCGG+AGG - contig523end:12149-12168 MsG0080048900.01.T01:intron 50.0%
TCATAACCCAAGGGCCTGTT+TGG + contig523end:11824-11843 None:intergenic 50.0%
TCGAACCTGAGACCTTAAGG+AGG - contig523end:12469-12488 MsG0080048900.01.T01:intron 50.0%
TCTTCAGTTCCACCAAGTGG+CGG - contig523end:12592-12611 MsG0080048900.01.T01:intron 50.0%
TGGGAACTGTTGTGAGTACC+AGG - contig523end:13833-13852 MsG0080048900.01.T01:exon 50.0%
TGTGCTCTTGATGCTACAGG+AGG - contig523end:10377-10396 MsG0080048900.01.T01:intron 50.0%
TTCTCAGGTATGGTGCAGCA+GGG - contig523end:13013-13032 MsG0080048900.01.T01:intron 50.0%
TTTGTGGATGACACCCCCAT+AGG + contig523end:12193-12212 None:intergenic 50.0%
! AAGGAGTGTGCTCCTCCTTA+AGG + contig523end:12484-12503 None:intergenic 50.0%
! ACTTTAGTTCCGCCACTTGG+TGG + contig523end:12604-12623 None:intergenic 50.0%
! ACTTTGTTTGGGCGCCTATG+GGG - contig523end:12176-12195 MsG0080048900.01.T01:intron 50.0%
! CAAGAGCACATGCATCCCAT+TGG + contig523end:10367-10386 None:intergenic 50.0%
! GATACGTCAAGAGCGCAAGA+AGG - contig523end:10928-10947 MsG0080048900.01.T01:intron 50.0%
!! GGCTACTGGTCTTTGACAGA+TGG - contig523end:12024-12043 MsG0080048900.01.T01:intron 50.0%
AAGATCCTTGGACCGGTGAC+AGG + contig523end:10668-10687 None:intergenic 55.0%
AGATCCTTGGACCGGTGACA+GGG + contig523end:10667-10686 None:intergenic 55.0%
AGCACATGCATCCCATTGGG+TGG + contig523end:10363-10382 None:intergenic 55.0%
ATTCTCCCCGGGGCCAATTT+GGG + contig523end:12450-12469 None:intergenic 55.0%
CAAGTTTGGAGGGGAGGCTT+TGG - contig523end:13441-13460 MsG0080048900.01.T01:intron 55.0%
CAGCAGTAGCGATAGGAGTG+AGG - contig523end:10066-10085 MsG0080048900.01.T01:exon 55.0%
CATGCATCCCATTGGGTGGA+TGG + contig523end:10359-10378 None:intergenic 55.0%
CCTTAGCGACGATGTGGTGT+GGG + contig523end:10490-10509 None:intergenic 55.0%
CTTAGCGACGATGTGGTGTG+GGG + contig523end:10489-10508 None:intergenic 55.0%
CTTCTCAGGTATGGTGCAGC+AGG - contig523end:13012-13031 MsG0080048900.01.T01:intron 55.0%
GGGTACTCCTTTCCTGACGA+GGG - contig523end:12046-12065 MsG0080048900.01.T01:intron 55.0%
GTCTCAGGTTCGATTCTCCC+CGG + contig523end:12462-12481 None:intergenic 55.0%
GTGAGTTTGGAGGGTAGGGA+GGG + contig523end:13751-13770 None:intergenic 55.0%
GTGATGGCAGCAGTAGCGAT+AGG - contig523end:10059-10078 MsG0080048900.01.T01:exon 55.0%
GTGCTCCTCCTTAAGGTCTC+AGG + contig523end:12477-12496 None:intergenic 55.0%
TCCTTAGCGACGATGTGGTG+TGG + contig523end:10491-10510 None:intergenic 55.0%
TCTCAGGTTCGATTCTCCCC+GGG + contig523end:12461-12480 None:intergenic 55.0%
TGTGAGTTTGGAGGGTAGGG+AGG + contig523end:13752-13771 None:intergenic 55.0%
! CTTTGGGGGGAAGAGAGTAG+GGG + contig523end:13728-13747 None:intergenic 55.0%
! CTTTGTTTGGGCGCCTATGG+GGG - contig523end:12177-12196 MsG0080048900.01.T01:intron 55.0%
!! GCTTTGGGGGGAAGAGAGTA+GGG + contig523end:13729-13748 None:intergenic 55.0%
!! GGAGGCTTTGGGTATGAGGA+AGG - contig523end:13453-13472 MsG0080048900.01.T01:exon 55.0%
CCCACACCACATCGTCGCTA+AGG - contig523end:10487-10506 MsG0080048900.01.T01:intron 60.0%
CTCAGGTTCGATTCTCCCCG+GGG + contig523end:12460-12479 None:intergenic 60.0%
GATCCTTGGACCGGTGACAG+GGG + contig523end:10666-10685 None:intergenic 60.0%
GATTCTCCCCGGGGCCAATT+TGG + contig523end:12451-12470 None:intergenic 60.0%
TAGCCCACCCAAATTGGCCC+CGG - contig523end:12440-12459 MsG0080048900.01.T01:intron 60.0%
TGCAACGTGGCGAGGAGTGA+GGG - contig523end:10035-10054 MsG0080048900.01.T01:exon 60.0%
TGGAGGGTAGGGAGGGCTTT+GGG + contig523end:13744-13763 None:intergenic 60.0%
TTGCAACGTGGCGAGGAGTG+AGG - contig523end:10034-10053 MsG0080048900.01.T01:exon 60.0%
TTGGAGGGTAGGGAGGGCTT+TGG + contig523end:13745-13764 None:intergenic 60.0%
! GGGGTACTCCTTTCCTGACG+AGG - contig523end:12045-12064 MsG0080048900.01.T01:intron 60.0%
!! GAGGGGAGGCTTTGGGTATG+AGG - contig523end:13449-13468 MsG0080048900.01.T01:intron 60.0%
!! GGCTTTGGGGGGAAGAGAGT+AGG + contig523end:13730-13749 None:intergenic 60.0%
AGCCCACCCAAATTGGCCCC+GGG - contig523end:12441-12460 MsG0080048900.01.T01:intron 65.0%
CAACGTGGCGAGGAGTGAGG+GGG - contig523end:10037-10056 MsG0080048900.01.T01:exon 65.0%
GACAGGGGTGAAGGGGACAC+AGG + contig523end:10651-10670 None:intergenic 65.0%
GACCGGTGACAGGGGTGAAG+GGG + contig523end:10658-10677 None:intergenic 65.0%
GCAACGTGGCGAGGAGTGAG+GGG - contig523end:10036-10055 MsG0080048900.01.T01:exon 65.0%
GGACCGGTGACAGGGGTGAA+GGG + contig523end:10659-10678 None:intergenic 65.0%
GGAGGGTAGGGAGGGCTTTG+GGG + contig523end:13743-13762 None:intergenic 65.0%
GTCCCCTTCACCCCTGTCAC+CGG - contig523end:10653-10672 MsG0080048900.01.T01:intron 65.0%
TCACCCCTGTCACCGGTCCA+AGG - contig523end:10660-10679 MsG0080048900.01.T01:intron 65.0%
TCCCCGGGGCCAATTTGGGT+GGG + contig523end:12446-12465 None:intergenic 65.0%
TGGACCGGTGACAGGGGTGA+AGG + contig523end:10660-10679 None:intergenic 65.0%
! GAGGGTAGGGAGGGCTTTGG+GGG + contig523end:13742-13761 None:intergenic 65.0%
!! AGGGTAGGGAGGGCTTTGGG+GGG + contig523end:13741-13760 None:intergenic 65.0%
CTCCCCGGGGCCAATTTGGG+TGG + contig523end:12447-12466 None:intergenic 70.0%
GCCCACCCAAATTGGCCCCG+GGG - contig523end:12442-12461 MsG0080048900.01.T01:intron 70.0%
GGCGAGGAGTGAGGGGGTGA+TGG - contig523end:10043-10062 MsG0080048900.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
contig523end gene 10001 14451 10001 ID=MsG0080048900.01;
contig523end mRNA 10001 14451 10001 ID=MsG0080048900.01.T01;Parent=MsG0080048900.01
contig523end exon 10001 10197 10001 ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end CDS 10138 10197 10138 ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end CDS 10975 11082 10975 ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end exon 10975 11082 10975 ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end CDS 11433 11603 11433 ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end exon 11433 11603 11433 ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end CDS 12199 12409 12199 ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end exon 12199 12409 12199 ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end CDS 12504 12556 12504 ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end exon 12504 12556 12504 ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end CDS 13452 14390 13452 ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end exon 13452 14451 13452 ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
Gene Sequence

>MsG0080048900.01.T01

ATGGCAGCAGTAGCGATAGGAGTGAGGTGCTGCTGCTCATTGTCGTTTCCGTCTCATCATCGCAAATCTTCTTCTTCTTCTGATTATTACTATTATTACAGAAGAAGAAGTAGAATCAATGCTTCTTCATTGTTTTGGGGATCTTCTAAGGACAACAACAAACATAATAACATTTCTTCTTCTTCTTCTTCGCATCAGCAACAATTCAGCTTCAATGTTACCAGCACAACAGAATCCGAAGAAGAAAAAGATAAGATTATTACTGTTTCTTTTGTATCTTCAATTTCAGATATTCCATCCACCCAATGGGATGCATGTGCTCTTGATGCTACAGGAGGACCAGACAAGTTCAATCCATTTCTATCACATGCTTTTCTATCATCTTTAGAACTATCCTCTTCTTCTGTTAAGGAAAAGGGATGGACCCCACACCACATCGTCGCTAAGGATATTCATAATCATATTCTCGCTGTTGTTCCTCTCTATCTCAAGACCCATTCCTATGGTGAATTCGTTTTTGATCATTCTTGGGCCAATGCTTACTCTCATTTTTATGGTTCCAATTCTTATTATCCTAAGTTACAATCCTGTGTCCCCTTCACCCCTGTCACCGGTCCAAGGATCTTACTTCGTAACACTTCTTTCAAACATCATGTTTTTGACTTCATTGTTTCTGCTATCAAGGATCTCACTGCCATGTCTCAACTTTCTTCCTTCCATGTCACTTTTCCCTCTGAAAACGAGTGGCACAAATTCACTCAACAAGGTTTCCTCCCTAGGATTGGAATGCAGTATCACTGGACCAACCGCAACTATACTAATTTTGATGACTTCTTGATGGACTTGAAGCATAATAAAAGGAAAAAGATACGTCAAGAGCGCAAGAAGGTTGCAGCTCAGAACTTGATTATGAAACGCCTCCGCGGTTATGAAATAAAGGCAAAGCACTGGGATTCCTTCTACACCTTTTACAGGAACACAACTGATAACAAATGGGGTACTCCTTTCCTGACGAGGGAATTTTTTCATGAGATGGGATCAAAAATGGGAGATCAAGTACTACTTATTGTTGCTGAAGACAATGAGGAACTAGTAGCAGGTGCCCTAAATCTTATCGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCATCCACAAACTTACTATCCATTTTTGCATTTTGAAGCATGTTATTATCAGGCAATTGAAGCAGCGATTGAACTCAATCTTAAAACAGTAGAAGCAGGAGCTCAGGGTGAACATAAGATTGAGCGTGGATATCTTCCAGTGACAACATATAGCTGCCATTACCTTATTGATGAAGATTTTAGGAAAGCTATAGAAGATTTTTTAGTTCGTGAATCTTCTCAGGCTTACTTTGCAATGGGAAAAGGCTTGCTTGTTGTTGTTGTGATGGTAAAGAATACATTATGCTTACTTTGCAAGTTTGGAGGGGAGGCTTTGGGTATGAGGAAGGAAGTGAAGCTTGTTATGAAACTCTTGCGTGATTCTGGTCCTTTCAAGGAAGGTGTCCTGTAG

Protein sequence

>MsG0080048900.01.T01

MAAVAIGVRCCCSLSFPSHHRKSSSSSDYYYYYRRRSRINASSLFWGSSKDNNKHNNISSSSSSHQQQFSFNVTSTTESEEEKDKIITVSFVSSISDIPSTQWDACALDATGGPDKFNPFLSHAFLSSLELSSSSVKEKGWTPHHIVAKDIHNHILAVVPLYLKTHSYGEFVFDHSWANAYSHFYGSNSYYPKLQSCVPFTPVTGPRILLRNTSFKHHVFDFIVSAIKDLTAMSQLSSFHVTFPSENEWHKFTQQGFLPRIGMQYHWTNRNYTNFDDFLMDLKHNKRKKIRQERKKVAAQNLIMKRLRGYEIKAKHWDSFYTFYRNTTDNKWGTPFLTREFFHEMGSKMGDQVLLIVAEDNEELVAGALNLIGGDTLFGRLWGCHPQTYYPFLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIERGYLPVTTYSCHYLIDEDFRKAIEDFLVRESSQAYFAMGKGLLVVVVMVKNTLCLLCKFGGEALGMRKEVKLVMKLLRDSGPFKEGVL*