AlfalfaGEDB | MsG0080048900.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048900.01

KEGG: K09919
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048900.01.T01	XP_013458719.1	89.689	514	16	2	1	513	1	478	0	947

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048900.01.T01	A0A072UTT2	89.689	514	16	2	1	513	1	478	0.0	947

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047989.01	MsG0080048900.01	0.833247	5.952081e-56	6.815440e-53
MsG0080048059.01	MsG0080048900.01	0.819100	1.386346e-52	1.056903e-49
MsG0080048068.01	MsG0080048900.01	0.810513	1.110200e-50	6.705465e-48
MsG0080048273.01	MsG0080048900.01	0.819087	1.396444e-52	1.064175e-49
MsG0080048274.01	MsG0080048900.01	0.822810	1.941411e-53	1.642241e-50
MsG0080048528.01	MsG0080048900.01	0.857712	1.354355e-62	3.373544e-59
MsG0080048776.01	MsG0080048900.01	0.866660	2.423669e-65	8.233979e-62
MsG0080048777.01	MsG0080048900.01	0.807578	4.721214e-50	2.639033e-47
MsG0080048801.01	MsG0080048900.01	0.831772	1.381226e-55	1.514023e-52
MsG0080048820.01	MsG0080048900.01	0.812821	3.496135e-51	2.245224e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048900.01.T01	MTR_4g134670	89.689	514	16	2	1	513	1	478	0.0	947

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048900.01.T01	AT2G23390	64.858	424	141	5	41	463	39	455	0.0	579
MsG0080048900.01.T01	AT2G23390	58.562	292	113	5	41	331	39	323	5.28e-117	348

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Find 69 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGTATAGTTGCGGT+TGG	0.560859	contig523end:+13566	None:intergenic
AAACGAATTCACCATAGGAA+TGG	0.502628	contig523end:+13874	None:intergenic
AACGAATTCACCATAGGAAT+GGG	0.478774	contig523end:+13875	None:intergenic
AAGAGCACATGCATCCCATT+GGG	0.508867	contig523end:+14067	None:intergenic
AAGATCCTTGGACCGGTGAC+AGG	0.427977	contig523end:+13765	None:intergenic
AAGTATGAATGAGGCATGAA+TGG	0.478706	contig523end:-14437	None:intergenic
ACGAAGTAAGATCCTTGGAC+CGG	0.613289	contig523end:+13758	None:intergenic
ACTATCCTCTTCTTCTGTTA+AGG	0.370385	contig523end:-13979	MsG0080048900.01.T01:exon
ACTGCATTCCAATCCTAGGG+AGG	0.691555	contig523end:+13598	None:intergenic
AGAAAAGCATGTGATAGAAA+TGG	0.417932	contig523end:+14014	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAATTCCACGGTGT+TGG	-	contig523end:11175-11194	MsG0080048900.01.T01:intron	30.0%
AAAATTAGTATAGTTGCGGT+TGG	+	contig523end:10867-10886	None:intergenic	30.0%
AAAGTGAACTTAGAAAGACA+AGG	+	contig523end:13053-13072	None:intergenic	30.0%
AATAAACCCCATATTCAAGT+TGG	+	contig523end:13510-13529	None:intergenic	30.0%
AATCTTAAAACAGTAGAAGC+AGG	-	contig523end:12873-12892	MsG0080048900.01.T01:intron	30.0%
AGCGTAATTTGATCCATATA+CGG	-	contig523end:13314-13333	MsG0080048900.01.T01:intron	30.0%
AGTTAGTTAAAGCCAAATGA+AGG	-	contig523end:11276-11295	MsG0080048900.01.T01:intron	30.0%
ATAGAACAAAATGGGAGATA+AGG	+	contig523end:12641-12660	None:intergenic	30.0%
ATCAAAAACGAATTCACCAT+AGG	+	contig523end:10564-10583	None:intergenic	30.0%
ATGCTTCCCTAATAGTAAAT+AGG	+	contig523end:12796-12815	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig523end	gene	10001	14451	10001	ID=MsG0080048900.01;
contig523end	mRNA	10001	14451	10001	ID=MsG0080048900.01.T01;Parent=MsG0080048900.01
contig523end	exon	10001	10197	10001	ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end	CDS	10138	10197	10138	ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end	CDS	10975	11082	10975	ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end	exon	10975	11082	10975	ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end	CDS	11433	11603	11433	ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end	exon	11433	11603	11433	ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end	CDS	12199	12409	12199	ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end	exon	12199	12409	12199	ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end	CDS	12504	12556	12504	ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end	exon	12504	12556	12504	ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01
contig523end	CDS	13452	14390	13452	ID=MsG0080048900.01.T01.cds;Parent=MsG0080048900.01.T01
contig523end	exon	13452	14451	13452	ID=MsG0080048900.01.T01.exon;Parent=MsG0080048900.01.T01

Gene Sequence

>MsG0080048900.01.T01

ATGGCAGCAGTAGCGATAGGAGTGAGGTGCTGCTGCTCATTGTCGTTTCCGTCTCATCATCGCAAATCTTCTTCTTCTTCTGATTATTACTATTATTACAGAAGAAGAAGTAGAATCAATGCTTCTTCATTGTTTTGGGGATCTTCTAAGGACAACAACAAACATAATAACATTTCTTCTTCTTCTTCTTCGCATCAGCAACAATTCAGCTTCAATGTTACCAGCACAACAGAATCCGAAGAAGAAAAAGATAAGATTATTACTGTTTCTTTTGTATCTTCAATTTCAGATATTCCATCCACCCAATGGGATGCATGTGCTCTTGATGCTACAGGAGGACCAGACAAGTTCAATCCATTTCTATCACATGCTTTTCTATCATCTTTAGAACTATCCTCTTCTTCTGTTAAGGAAAAGGGATGGACCCCACACCACATCGTCGCTAAGGATATTCATAATCATATTCTCGCTGTTGTTCCTCTCTATCTCAAGACCCATTCCTATGGTGAATTCGTTTTTGATCATTCTTGGGCCAATGCTTACTCTCATTTTTATGGTTCCAATTCTTATTATCCTAAGTTACAATCCTGTGTCCCCTTCACCCCTGTCACCGGTCCAAGGATCTTACTTCGTAACACTTCTTTCAAACATCATGTTTTTGACTTCATTGTTTCTGCTATCAAGGATCTCACTGCCATGTCTCAACTTTCTTCCTTCCATGTCACTTTTCCCTCTGAAAACGAGTGGCACAAATTCACTCAACAAGGTTTCCTCCCTAGGATTGGAATGCAGTATCACTGGACCAACCGCAACTATACTAATTTTGATGACTTCTTGATGGACTTGAAGCATAATAAAAGGAAAAAGATACGTCAAGAGCGCAAGAAGGTTGCAGCTCAGAACTTGATTATGAAACGCCTCCGCGGTTATGAAATAAAGGCAAAGCACTGGGATTCCTTCTACACCTTTTACAGGAACACAACTGATAACAAATGGGGTACTCCTTTCCTGACGAGGGAATTTTTTCATGAGATGGGATCAAAAATGGGAGATCAAGTACTACTTATTGTTGCTGAAGACAATGAGGAACTAGTAGCAGGTGCCCTAAATCTTATCGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCATCCACAAACTTACTATCCATTTTTGCATTTTGAAGCATGTTATTATCAGGCAATTGAAGCAGCGATTGAACTCAATCTTAAAACAGTAGAAGCAGGAGCTCAGGGTGAACATAAGATTGAGCGTGGATATCTTCCAGTGACAACATATAGCTGCCATTACCTTATTGATGAAGATTTTAGGAAAGCTATAGAAGATTTTTTAGTTCGTGAATCTTCTCAGGCTTACTTTGCAATGGGAAAAGGCTTGCTTGTTGTTGTTGTGATGGTAAAGAATACATTATGCTTACTTTGCAAGTTTGGAGGGGAGGCTTTGGGTATGAGGAAGGAAGTGAAGCTTGTTATGAAACTCTTGCGTGATTCTGGTCCTTTCAAGGAAGGTGTCCTGTAG

Protein sequence

>MsG0080048900.01.T01

MAAVAIGVRCCCSLSFPSHHRKSSSSSDYYYYYRRRSRINASSLFWGSSKDNNKHNNISSSSSSHQQQFSFNVTSTTESEEEKDKIITVSFVSSISDIPSTQWDACALDATGGPDKFNPFLSHAFLSSLELSSSSVKEKGWTPHHIVAKDIHNHILAVVPLYLKTHSYGEFVFDHSWANAYSHFYGSNSYYPKLQSCVPFTPVTGPRILLRNTSFKHHVFDFIVSAIKDLTAMSQLSSFHVTFPSENEWHKFTQQGFLPRIGMQYHWTNRNYTNFDDFLMDLKHNKRKKIRQERKKVAAQNLIMKRLRGYEIKAKHWDSFYTFYRNTTDNKWGTPFLTREFFHEMGSKMGDQVLLIVAEDNEELVAGALNLIGGDTLFGRLWGCHPQTYYPFLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIERGYLPVTTYSCHYLIDEDFRKAIEDFLVRESSQAYFAMGKGLLVVVVMVKNTLCLLCKFGGEALGMRKEVKLVMKLLRDSGPFKEGVL*