AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048274.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048274.01.T01 MTR_8g107270 93.220 236 16 0 1 236 48 283 3.20e-167 464
MsG0080048274.01.T01 MTR_4g078545 56.303 238 104 0 1 238 105 342 1.26e-95 285
MsG0080048274.01.T01 MTR_3g028590 56.303 238 104 0 1 238 123 360 2.94e-94 281
MsG0080048274.01.T01 MTR_3g028590 56.303 238 104 0 1 238 127 364 3.11e-94 281
MsG0080048274.01.T01 MTR_2g098070 56.723 238 103 0 1 238 96 333 1.52e-93 279
MsG0080048274.01.T01 MTR_8g036880 56.067 239 104 1 1 238 132 370 1.67e-90 272
MsG0080048274.01.T01 MTR_3g104500 36.325 234 143 4 8 238 72 302 1.54e-48 162
MsG0080048274.01.T01 MTR_3g104600 31.984 247 134 10 12 234 69 305 3.81e-22 93.6
MsG0080048274.01.T01 MTR_3g107510 27.391 230 149 7 15 238 156 373 4.46e-22 94.0
MsG0080048274.01.T01 MTR_3g107510 28.571 161 95 4 11 164 247 394 2.28e-13 68.9
MsG0080048274.01.T01 MTR_1g012030 27.948 229 147 8 16 238 174 390 2.99e-21 91.7
MsG0080048274.01.T01 MTR_1g012030 29.114 158 98 4 11 164 264 411 1.43e-13 69.7
MsG0080048274.01.T01 MTR_7g064980 28.251 223 145 6 19 233 74 289 1.19e-20 89.0
MsG0080048274.01.T01 MTR_5g009500 26.718 262 145 9 4 233 67 313 4.49e-20 87.8
MsG0080048274.01.T01 MTR_8g027975 26.482 253 155 8 6 233 82 328 5.12e-20 87.8
MsG0080048274.01.T01 MTR_7g068340 29.524 210 129 7 24 232 139 330 2.71e-19 85.9
MsG0080048274.01.T01 MTR_8g096050 26.906 223 153 5 20 238 266 482 1.04e-18 84.7
MsG0080048274.01.T01 MTR_6g091800 26.667 240 147 7 13 234 54 282 1.13e-18 83.6
MsG0080048274.01.T01 MTR_4g016730 29.108 213 123 6 24 232 141 329 2.31e-18 83.2
MsG0080048274.01.T01 MTR_4g114320 25.551 227 154 7 16 238 159 374 5.77e-18 82.4
MsG0080048274.01.T01 MTR_4g114320 31.481 162 97 4 78 236 125 275 5.97e-13 67.8
MsG0080048274.01.T01 MTR_4g114320 28.758 153 96 3 11 160 249 391 2.27e-11 63.2
MsG0080048274.01.T01 MTR_6g091800 28.155 206 122 6 13 203 54 248 5.77e-17 78.2
MsG0080048274.01.T01 MTR_6g091800 25.764 229 142 7 13 224 54 271 1.40e-16 77.0
MsG0080048274.01.T01 MTR_7g084400 27.273 220 145 6 19 233 251 460 3.25e-16 77.4
MsG0080048274.01.T01 MTR_6g091800 25.758 264 143 8 13 234 54 306 4.86e-16 76.3
MsG0080048274.01.T01 MTR_6g091800 25.758 264 143 8 13 234 54 306 6.61e-16 75.9
MsG0080048274.01.T01 MTR_2g436930 23.228 254 166 5 6 236 55 302 7.33e-16 75.9
MsG0080048274.01.T01 MTR_6g092210 25.328 229 156 5 14 234 1 222 9.59e-16 74.7
MsG0080048274.01.T01 MTR_6g034145 24.790 238 152 6 14 234 1 228 2.18e-15 73.6
MsG0080048274.01.T01 MTR_3g098460 24.885 217 153 5 21 233 245 455 4.67e-15 74.3
MsG0080048274.01.T01 MTR_6g091800 26.957 230 118 7 13 203 54 272 3.50e-14 70.9
MsG0080048274.01.T01 MTR_8g090210 27.273 264 140 9 2 236 135 375 3.92e-14 71.2
MsG0080048274.01.T01 MTR_4g119770 22.672 247 164 4 11 236 63 303 3.96e-14 70.9
MsG0080048274.01.T01 MTR_6g091800 24.901 253 138 8 13 224 54 295 9.06e-14 69.7
MsG0080048274.01.T01 MTR_3g074490 26.531 245 142 7 18 238 153 383 1.36e-13 69.7
MsG0080048274.01.T01 MTR_5g081150 25.664 226 154 5 16 233 77 296 1.62e-13 68.9
MsG0080048274.01.T01 MTR_4g005330 21.862 247 159 4 14 238 33 267 2.75e-12 65.5
MsG0080048274.01.T01 MTR_4g119770 24.000 200 135 3 11 199 63 256 3.94e-12 64.7
MsG0080048274.01.T01 MTR_4g005330 21.862 247 159 4 14 238 99 333 5.52e-12 64.7
MsG0080048274.01.T01 MTR_4g012850 24.000 225 156 5 16 233 51 267 5.73e-12 64.3
MsG0080048274.01.T01 MTR_7g109135 23.874 222 156 8 17 232 66 280 8.50e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048274.01.T01 AT5G17400 74.576 236 60 0 1 236 44 279 3.58e-131 372
MsG0080048274.01.T01 AT4G28390 57.143 238 102 0 1 238 113 350 5.11e-95 283
MsG0080048274.01.T01 AT4G28390 57.143 238 102 0 1 238 113 350 5.11e-95 283
MsG0080048274.01.T01 AT5G13490 55.230 239 106 1 1 238 118 356 1.67e-89 269
MsG0080048274.01.T01 AT5G13490 55.230 239 106 1 1 238 118 356 1.67e-89 269
MsG0080048274.01.T01 AT3G08580 54.393 239 108 1 1 238 114 352 1.55e-87 264
MsG0080048274.01.T01 AT3G08580 54.393 239 108 1 1 238 114 352 1.55e-87 264
MsG0080048274.01.T01 AT5G56450 37.946 224 129 5 20 238 88 306 4.19e-45 154
MsG0080048274.01.T01 AT2G37890 30.045 223 142 5 19 233 91 307 2.15e-24 99.4
MsG0080048274.01.T01 AT5G01500 31.905 210 124 8 24 232 171 362 3.63e-23 97.1
MsG0080048274.01.T01 AT3G51870 29.245 212 133 6 21 232 140 334 2.97e-22 94.4
MsG0080048274.01.T01 AT1G14560 31.837 245 136 11 12 234 61 296 1.74e-21 91.3
MsG0080048274.01.T01 AT1G14560 31.148 244 139 10 12 234 61 296 2.75e-21 90.9
MsG0080048274.01.T01 AT3G53940 29.204 226 138 6 20 233 120 335 5.67e-21 90.5
MsG0080048274.01.T01 AT3G55640 28.194 227 139 8 20 233 85 300 1.03e-20 89.4
MsG0080048274.01.T01 AT3G55640 28.194 227 139 8 20 233 85 300 1.03e-20 89.4
MsG0080048274.01.T01 AT4G26180 29.536 237 147 8 12 234 55 285 1.49e-20 88.2
MsG0080048274.01.T01 AT4G26180 29.536 237 147 8 12 234 55 285 1.93e-20 88.6
MsG0080048274.01.T01 AT4G01100 26.592 267 147 7 6 238 23 274 3.42e-20 87.4
MsG0080048274.01.T01 AT4G01100 27.099 262 142 7 6 233 73 319 5.67e-20 87.8
MsG0080048274.01.T01 AT3G21390 25.191 262 165 4 2 238 55 310 6.19e-19 84.7
MsG0080048274.01.T01 AT3G21390 25.385 260 163 4 2 236 77 330 6.98e-19 84.7
MsG0080048274.01.T01 AT4G01100 27.341 267 149 8 6 233 73 333 5.27e-18 82.4
MsG0080048274.01.T01 AT3G20240 22.745 255 147 5 14 238 85 319 3.43e-17 79.7
MsG0080048274.01.T01 AT5G07320 26.201 229 147 7 11 233 239 451 8.71e-17 79.3
MsG0080048274.01.T01 AT5G61810 26.991 226 147 5 12 233 96 307 1.94e-16 77.4
MsG0080048274.01.T01 AT4G32400 25.641 234 148 8 15 238 148 365 3.47e-16 77.4
MsG0080048274.01.T01 AT4G32400 28.846 156 101 4 11 164 239 386 5.46e-11 62.0
MsG0080048274.01.T01 AT5G48970 25.000 264 156 8 4 236 60 312 3.85e-16 76.6
MsG0080048274.01.T01 AT5G61810 26.991 226 147 5 12 233 239 450 4.86e-16 77.0
MsG0080048274.01.T01 AT3G55640 29.801 151 86 5 19 160 84 223 1.01e-15 74.7
MsG0080048274.01.T01 AT3G55640 29.801 151 86 5 19 160 84 223 1.01e-15 74.7
MsG0080048274.01.T01 AT1G14560 32.584 178 99 7 75 234 24 198 3.05e-15 72.8
MsG0080048274.01.T01 AT5G51050 24.554 224 156 4 14 233 256 470 1.21e-14 73.2
MsG0080048274.01.T01 AT5G48970 24.082 245 150 6 19 236 6 241 4.37e-14 70.1
MsG0080048274.01.T01 AT5G64970 27.236 246 143 8 14 236 44 276 4.47e-14 70.5
MsG0080048274.01.T01 AT5G64970 27.236 246 143 8 14 236 168 400 5.05e-14 70.9
MsG0080048274.01.T01 AT5G64970 27.236 246 143 8 14 236 168 400 5.60e-14 70.9
MsG0080048274.01.T01 AT3G53940 28.667 150 89 3 19 160 119 258 4.05e-13 67.8
MsG0080048274.01.T01 AT1G79900 25.664 226 142 6 16 233 51 258 6.09e-12 64.3

Find 65 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATTATAATACTTATTC+TGG 0.231839 contig25end:+30360 None:intergenic
GGGATTCGGTGTTTCAATAT+TGG 0.231853 contig25end:-30966 MsG0080048273.01.T01:CDS
AAGAGGGTCTCCTTGCCTTT+TGG 0.234640 contig25end:-31683 MsG0080048273.01.T01:CDS
GGTTACTTCAAAAGCATCTT+TGG 0.242168 contig25end:-31217 MsG0080048273.01.T01:CDS
ACTGGTCACCGTCAGTTTAA+AGG 0.285006 contig25end:-31046 MsG0080048273.01.T01:CDS
TTCTTTGCTAGTTTCTTGTT+AGG 0.299649 contig25end:-30464 MsG0080048273.01.T01:intron
GGATTCGGTGTTTCAATATT+GGG 0.326349 contig25end:-30965 MsG0080048273.01.T01:CDS
AGTCACTGCAACATGCTTCT+AGG 0.335964 contig25end:-30282 None:intergenic
TTGCTAGTTTCTTGTTAGGT+TGG 0.348330 contig25end:-30460 MsG0080048273.01.T01:intron
AACTAAAACAATAGGCTTCA+TGG 0.352724 contig25end:+30901 None:intergenic
GGGTACATCAAGTGGTTTGC+TGG 0.371317 contig25end:-31175 MsG0080048273.01.T01:CDS
TGGAGCATCACAACTGTATC+TGG 0.393342 contig25end:-30440 MsG0080048273.01.T01:CDS
AAAGGTCCAACTAAAACAAT+AGG 0.409592 contig25end:+30893 None:intergenic
GGACTTTGCACGTACAAGAT+TGG 0.415555 contig25end:-31095 MsG0080048273.01.T01:CDS
TTTGCTGGGAATGTGGCTTC+AGG 0.417717 contig25end:-31160 MsG0080048273.01.T01:CDS
ATGGTGTTGCTGGCTTGTAC+AGG 0.427812 contig25end:-30988 MsG0080048273.01.T01:CDS
ATATCAAGTGATGGTGTTGC+TGG 0.431324 contig25end:-30998 MsG0080048273.01.T01:CDS
TGTATCGAGGAATGTACTTT+GGG 0.438762 contig25end:-30934 MsG0080048273.01.T01:CDS
GATGTACCCATCTTTCTCTC+TGG 0.444325 contig25end:+31189 None:intergenic
GTATAAATGCTTACCTCAAA+AGG 0.445098 contig25end:+30875 None:intergenic
GCTGGCTTGTACAGGGGATT+CGG 0.454958 contig25end:-30980 MsG0080048273.01.T01:CDS
CATGCATTCCGTGAGATTGT+TGG 0.459314 contig25end:-30335 MsG0080048273.01.T01:CDS
GTGGCTTCAGGCAGTGCTGC+GGG 0.459875 contig25end:-31148 MsG0080048273.01.T01:CDS
CGTGAGATTGTTGGACAAGA+GGG 0.488183 contig25end:-30326 MsG0080048273.01.T01:CDS
ATGTATCGAGGAATGTACTT+TGG 0.489826 contig25end:-30935 MsG0080048273.01.T01:CDS
TAAAAGAGTCTTTGCTGAAG+AGG 0.493467 contig25end:-31700 MsG0080048273.01.T01:CDS
GTCACTGCAACATGCTTCTA+GGG 0.504029 contig25end:-30281 None:intergenic
ATAATACTTATTCTGGTGCC+CGG 0.509415 contig25end:+30367 None:intergenic
AAAAGAGTCTTTGCTGAAGA+GGG 0.517416 contig25end:-31699 MsG0080048273.01.T01:CDS
CGACGGCGTAATGTGTCAAA+AGG 0.519765 contig25end:+30404 None:intergenic
GGATATTCCAGAGAGAAAGA+TGG 0.522046 contig25end:-31196 MsG0080048273.01.T01:CDS
GGTGTTGCTGGCTTGTACAG+GGG 0.525521 contig25end:-30986 MsG0080048273.01.T01:CDS
AATATCTAATAACATTGGCC+TGG 0.525661 contig25end:+31652 None:intergenic
TGGTGTTGCTGGCTTGTACA+GGG 0.527675 contig25end:-30987 MsG0080048273.01.T01:CDS
GGTGACCAGTGGCATGGCAC+TGG 0.528489 contig25end:+31059 None:intergenic
GGTTTCTTAGCTCTATTTCG+AGG 0.528923 contig25end:-30305 MsG0080048273.01.T01:CDS
CAAAGCGAAATGATTAAAAG+AGG 0.529225 contig25end:-31762 MsG0080048273.01.T01:exon
CGTCGTATGATGCTAACCTC+CGG 0.530080 contig25end:-30386 MsG0080048273.01.T01:CDS
GGCCTGGTGACCTCTCCAAA+AGG 0.537477 contig25end:+31668 None:intergenic
TCAGTCCAGTGCCATGCCAC+TGG 0.539129 contig25end:-31064 MsG0080048273.01.T01:CDS
GATATTCCAGAGAGAAAGAT+GGG 0.540943 contig25end:-31195 MsG0080048273.01.T01:CDS
CCGTGAGATTGTTGGACAAG+AGG 0.542206 contig25end:-30327 MsG0080048273.01.T01:CDS
GTCGTATGATGCTAACCTCC+GGG 0.550555 contig25end:-30385 MsG0080048273.01.T01:CDS
AAAGTACATTCCTCGATACA+TGG 0.553101 contig25end:+30937 None:intergenic
TGTGGCTTCAGGCAGTGCTG+CGG 0.558659 contig25end:-31149 MsG0080048273.01.T01:CDS
TAAAGGTATTAGACAAACCA+AGG 0.560990 contig25end:+31721 None:intergenic
GGTACATCAAGTGGTTTGCT+GGG 0.566321 contig25end:-31174 MsG0080048273.01.T01:CDS
CAAATGATACAAAAGTATTG+AGG 0.568033 contig25end:+31117 None:intergenic
CGTAAAACAATATCAAGTGA+TGG 0.574072 contig25end:-31007 MsG0080048273.01.T01:CDS
AACCTCAAAACACCATACCT+TGG 0.575189 contig25end:-31738 MsG0080048273.01.T01:CDS
AAAGAATCACCCACCTGTGT+GGG 0.587870 contig25end:+31627 None:intergenic
GGGAAAATATCTAATAACAT+TGG 0.589711 contig25end:+31647 None:intergenic
GTATTAGACAAACCAAGGTA+TGG 0.595810 contig25end:+31726 None:intergenic
CAAGTGGTTTGCTGGGAATG+TGG 0.602125 contig25end:-31167 MsG0080048273.01.T01:CDS
AGAAAGATGGGTACATCAAG+TGG 0.605042 contig25end:-31183 MsG0080048273.01.T01:CDS
GAATTAGTCCTTTAAACTGA+CGG 0.606819 contig25end:+31038 None:intergenic
CCTCTTGTCCAACAATCTCA+CGG 0.613033 contig25end:+30327 None:intergenic
GGTGACCTCTCCAAAAGGCA+AGG 0.614061 contig25end:+31673 None:intergenic
CAAAGAATCACCCACCTGTG+TGG 0.626617 contig25end:+31626 None:intergenic
ACTGACGGTGACCAGTGGCA+TGG 0.636991 contig25end:+31053 None:intergenic
TTGGGAATCACCATGTATCG+AGG 0.659477 contig25end:-30947 MsG0080048273.01.T01:CDS
TTTAAACTGACGGTGACCAG+TGG 0.674236 contig25end:+31048 None:intergenic
ATGGCACTGGACTGAATCAG+TGG 0.678456 contig25end:+31072 None:intergenic
ATACTTATTCTGGTGCCCGG+AGG 0.698949 contig25end:+30370 None:intergenic
CGGAGGTTAGCATCATACGA+CGG 0.749578 contig25end:+30387 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAAAAACTCTAATAT+TGG + contig25end:31303-31322 None:intergenic 10.0%
!! AAGATGTATGTTAAAATTAA+AGG + contig25end:31355-31374 None:intergenic 15.0%
!! TATGTTAAAATTAAAGGTAA+GGG + contig25end:31349-31368 None:intergenic 15.0%
!! CATTACAAAACAAGTATAAT+AGG + contig25end:30498-30517 None:intergenic 20.0%
!! GTATGTTAAAATTAAAGGTA+AGG + contig25end:31350-31369 None:intergenic 20.0%
!! TTGAAATTGAGAATTATTTG+AGG + contig25end:30639-30658 None:intergenic 20.0%
!! TTGCATTATAATACTTATTC+TGG + contig25end:31679-31698 None:intergenic 20.0%
!! TTTGATTGGAATACAAAATA+CGG + contig25end:30707-30726 None:intergenic 20.0%
!!! TACTTGTTTTGTAATGTTTT+TGG - contig25end:30502-30521 MsG0080048273.01.T01:intron 20.0%
! AACATAGATCTATAATTCAC+AGG - contig25end:31201-31220 MsG0080048273.01.T01:CDS 25.0%
! GGGAAAATATCTAATAACAT+TGG + contig25end:30392-30411 None:intergenic 25.0%
! TATTTGAGCAAACAGTTAAT+TGG - contig25end:30768-30787 MsG0080048273.01.T01:intron 25.0%
! TTGATTGGAATACAAAATAC+GGG + contig25end:30706-30725 None:intergenic 25.0%
!! CTCAATACTTTTGTATCATT+TGG - contig25end:30920-30939 MsG0080048273.01.T01:CDS 25.0%
!! TATTATGCTGCTTATATTGA+TGG - contig25end:31318-31337 MsG0080048273.01.T01:intron 25.0%
!!! CAAATGATACAAAAGTATTG+AGG + contig25end:30922-30941 None:intergenic 25.0%
!!! CTTTTGATTTATATTCTGCA+GGG - contig25end:31545-31564 MsG0080048273.01.T01:intron 25.0%
!!! TCTTTTGATTTATATTCTGC+AGG - contig25end:31544-31563 MsG0080048273.01.T01:intron 25.0%
!!! TTTTGATTTATATTCTGCAG+GGG - contig25end:31546-31565 MsG0080048273.01.T01:intron 25.0%
AAAGGTCCAACTAAAACAAT+AGG + contig25end:31146-31165 None:intergenic 30.0%
AACTAAAACAATAGGCTTCA+TGG + contig25end:31138-31157 None:intergenic 30.0%
AATATCTAATAACATTGGCC+TGG + contig25end:30387-30406 None:intergenic 30.0%
AATTAGTTCACTAAAAGTCC+AGG - contig25end:30575-30594 MsG0080048273.01.T01:CDS 30.0%
ACTAAAACTAATGTCCATAG+AGG + contig25end:30613-30632 None:intergenic 30.0%
AGTGAACTAATTACAACACA+CGG + contig25end:30567-30586 None:intergenic 30.0%
ATCAAAATGCTATACCAACA+AGG + contig25end:31468-31487 None:intergenic 30.0%
ATCTATAATTCACAGGCAAT+GGG - contig25end:31208-31227 MsG0080048273.01.T01:CDS 30.0%
ATGAATTTATGTCAGAGCAT+TGG - contig25end:31486-31505 MsG0080048273.01.T01:intron 30.0%
CAAGTTAGACAACAGTAATT+TGG - contig25end:31393-31412 MsG0080048273.01.T01:intron 30.0%
CGTAAAACAATATCAAGTGA+TGG - contig25end:31029-31048 MsG0080048273.01.T01:CDS 30.0%
GAATTAGTCCTTTAAACTGA+CGG + contig25end:31001-31020 None:intergenic 30.0%
GTATAAATGCTTACCTCAAA+AGG + contig25end:31164-31183 None:intergenic 30.0%
TCAAAATGCTATACCAACAA+GGG + contig25end:31467-31486 None:intergenic 30.0%
! CAAACAGTTAATTGGTCTAT+AGG - contig25end:30776-30795 MsG0080048273.01.T01:intron 30.0%
! GCTTTCAATTTTGCATTCAA+AGG - contig25end:30798-30817 MsG0080048273.01.T01:intron 30.0%
! TATTAGATATTTTCCCACAC+AGG - contig25end:30396-30415 MsG0080048273.01.T01:CDS 30.0%
! TTCAGCAAAGACTCTTTTAA+AGG + contig25end:30335-30354 None:intergenic 30.0%
! TTCTTTGCTAGTTTCTTGTT+AGG - contig25end:31572-31591 MsG0080048273.01.T01:intron 30.0%
!! TAAAGGTATTAGACAAACCA+AGG + contig25end:30318-30337 None:intergenic 30.0%
!!! ATGAAGCCTATTGTTTTAGT+TGG - contig25end:31137-31156 MsG0080048273.01.T01:CDS 30.0%
AAAAGAGTCTTTGCTGAAGA+GGG - contig25end:30337-30356 MsG0080048273.01.T01:CDS 35.0%
AAAGTACATTCCTCGATACA+TGG + contig25end:31102-31121 None:intergenic 35.0%
AAGACTCATATTCCAATGCA+AGG + contig25end:31528-31547 None:intergenic 35.0%
AGACTCATATTCCAATGCAA+GGG + contig25end:31527-31546 None:intergenic 35.0%
ATAATACTTATTCTGGTGCC+CGG + contig25end:31672-31691 None:intergenic 35.0%
ATGTATCGAGGAATGTACTT+TGG - contig25end:31101-31120 MsG0080048273.01.T01:CDS 35.0%
GATATTCCAGAGAGAAAGAT+GGG - contig25end:30841-30860 MsG0080048273.01.T01:CDS 35.0%
GATCTATAATTCACAGGCAA+TGG - contig25end:31207-31226 MsG0080048273.01.T01:CDS 35.0%
GGGTTAATAATTGCTTCTCT+TGG - contig25end:31239-31258 MsG0080048273.01.T01:CDS 35.0%
GTATTAGACAAACCAAGGTA+TGG + contig25end:30313-30332 None:intergenic 35.0%
GTGAACTAATTACAACACAC+GGG + contig25end:30566-30585 None:intergenic 35.0%
GTTTATTTATGCCCTTGCAT+TGG - contig25end:31513-31532 MsG0080048273.01.T01:intron 35.0%
TAAAAGAGTCTTTGCTGAAG+AGG - contig25end:30336-30355 MsG0080048273.01.T01:CDS 35.0%
TATTTACCTCATCTTTGAGC+TGG - contig25end:30456-30475 MsG0080048273.01.T01:intron 35.0%
TGTATCGAGGAATGTACTTT+GGG - contig25end:31102-31121 MsG0080048273.01.T01:CDS 35.0%
! AAAGACTGTTATTTGAGAGC+AGG + contig25end:30731-30750 None:intergenic 35.0%
! AAGACTGTTATTTGAGAGCA+GGG + contig25end:30730-30749 None:intergenic 35.0%
! TTGCTAGTTTCTTGTTAGGT+TGG - contig25end:31576-31595 MsG0080048273.01.T01:intron 35.0%
! TTTTTCGTCTGTTCCATGTT+AGG - contig25end:31269-31288 MsG0080048273.01.T01:intron 35.0%
!! GGATTCGGTGTTTCAATATT+GGG - contig25end:31071-31090 MsG0080048273.01.T01:CDS 35.0%
!! GGTTACTTCAAAAGCATCTT+TGG - contig25end:30819-30838 MsG0080048273.01.T01:CDS 35.0%
!!! TGTTTTAGTTGGACCTTTTG+AGG - contig25end:31148-31167 MsG0080048273.01.T01:CDS 35.0%
AACCTCAAAACACCATACCT+TGG - contig25end:30298-30317 MsG0080048273.01.T01:CDS 40.0%
ACAAGTGACAATGAACACAC+AGG + contig25end:30673-30692 None:intergenic 40.0%
ACAGGCAATGGGAAAATATG+GGG - contig25end:31219-31238 MsG0080048273.01.T01:CDS 40.0%
AGAAAGATGGGTACATCAAG+TGG - contig25end:30853-30872 MsG0080048273.01.T01:CDS 40.0%
ATACCAACAAGGGATGTATC+TGG + contig25end:31457-31476 None:intergenic 40.0%
ATTGGCATGCATACCTAACA+TGG + contig25end:31285-31304 None:intergenic 40.0%
ATTTGAGAGCAGGGTTTGAT+TGG + contig25end:30721-30740 None:intergenic 40.0%
CAAGTGACAATGAACACACA+GGG + contig25end:30672-30691 None:intergenic 40.0%
CACAGGCAATGGGAAAATAT+GGG - contig25end:31218-31237 MsG0080048273.01.T01:CDS 40.0%
CATTTACCAGCTCAAAGATG+AGG + contig25end:30465-30484 None:intergenic 40.0%
CTCATCTTTGAGCTGGTAAA+TGG - contig25end:30463-30482 MsG0080048273.01.T01:intron 40.0%
GGATATTCCAGAGAGAAAGA+TGG - contig25end:30840-30859 MsG0080048273.01.T01:CDS 40.0%
TACCAACAAGGGATGTATCT+GGG + contig25end:31456-31475 None:intergenic 40.0%
TCACAGGCAATGGGAAAATA+TGG - contig25end:31217-31236 MsG0080048273.01.T01:CDS 40.0%
! AACCAAGGTATGGTGTTTTG+AGG + contig25end:30303-30322 None:intergenic 40.0%
! AGATATTTTCCCACACAGGT+GGG - contig25end:30400-30419 MsG0080048273.01.T01:CDS 40.0%
! TAGATATTTTCCCACACAGG+TGG - contig25end:30399-30418 MsG0080048273.01.T01:CDS 40.0%
!! ATATCAAGTGATGGTGTTGC+TGG - contig25end:31038-31057 MsG0080048273.01.T01:CDS 40.0%
!! GGGATTCGGTGTTTCAATAT+TGG - contig25end:31070-31089 MsG0080048273.01.T01:CDS 40.0%
!! GGTTTCTTAGCTCTATTTCG+AGG - contig25end:31731-31750 MsG0080048273.01.T01:CDS 40.0%
AAAGAATCACCCACCTGTGT+GGG + contig25end:30412-30431 None:intergenic 45.0%
ACTGGTCACCGTCAGTTTAA+AGG - contig25end:30990-31009 MsG0080048273.01.T01:CDS 45.0%
CATGCATTCCGTGAGATTGT+TGG - contig25end:31701-31720 MsG0080048273.01.T01:CDS 45.0%
CCTCTTGTCCAACAATCTCA+CGG + contig25end:31712-31731 None:intergenic 45.0%
CGTGAGATTGTTGGACAAGA+GGG - contig25end:31710-31729 MsG0080048273.01.T01:CDS 45.0%
GATGTACCCATCTTTCTCTC+TGG + contig25end:30850-30869 None:intergenic 45.0%
GGACTTTGCACGTACAAGAT+TGG - contig25end:30941-30960 MsG0080048273.01.T01:CDS 45.0%
GGTCAAATCTCTCTCCTCTA+TGG - contig25end:30596-30615 MsG0080048273.01.T01:intron 45.0%
TAGAGGAGAGAGATTTGACC+TGG + contig25end:30596-30615 None:intergenic 45.0%
TTCCCAGATACATCCCTTGT+TGG - contig25end:31451-31470 MsG0080048273.01.T01:intron 45.0%
TTGGGAATCACCATGTATCG+AGG - contig25end:31089-31108 MsG0080048273.01.T01:CDS 45.0%
TTTAAACTGACGGTGACCAG+TGG + contig25end:30991-31010 None:intergenic 45.0%
! TGGAGCATCACAACTGTATC+TGG - contig25end:31596-31615 MsG0080048273.01.T01:intron 45.0%
!! GGTACATCAAGTGGTTTGCT+GGG - contig25end:30862-30881 MsG0080048273.01.T01:CDS 45.0%
ATACTTATTCTGGTGCCCGG+AGG + contig25end:31669-31688 None:intergenic 50.0%
CAAAGAATCACCCACCTGTG+TGG + contig25end:30413-30432 None:intergenic 50.0%
CCGTGAGATTGTTGGACAAG+AGG - contig25end:31709-31728 MsG0080048273.01.T01:CDS 50.0%
CGACGGCGTAATGTGTCAAA+AGG + contig25end:31635-31654 None:intergenic 50.0%
CGGAGGTTAGCATCATACGA+CGG + contig25end:31652-31671 None:intergenic 50.0%
CGTCGTATGATGCTAACCTC+CGG - contig25end:31650-31669 MsG0080048273.01.T01:CDS 50.0%
GTCGTATGATGCTAACCTCC+GGG - contig25end:31651-31670 MsG0080048273.01.T01:CDS 50.0%
TTTGCTGGGAATGTGGCTTC+AGG - contig25end:30876-30895 MsG0080048273.01.T01:CDS 50.0%
! AAGAGGGTCTCCTTGCCTTT+TGG - contig25end:30353-30372 MsG0080048273.01.T01:CDS 50.0%
! ATGGCACTGGACTGAATCAG+TGG + contig25end:30967-30986 None:intergenic 50.0%
! GGGTACATCAAGTGGTTTGC+TGG - contig25end:30861-30880 MsG0080048273.01.T01:CDS 50.0%
!! ATGGTGTTGCTGGCTTGTAC+AGG - contig25end:31048-31067 MsG0080048273.01.T01:CDS 50.0%
!! CAAGTGGTTTGCTGGGAATG+TGG - contig25end:30869-30888 MsG0080048273.01.T01:CDS 50.0%
!! TGGTGTTGCTGGCTTGTACA+GGG - contig25end:31049-31068 MsG0080048273.01.T01:CDS 50.0%
GGTGACCTCTCCAAAAGGCA+AGG + contig25end:30366-30385 None:intergenic 55.0%
!! GCTGGCTTGTACAGGGGATT+CGG - contig25end:31056-31075 MsG0080048273.01.T01:CDS 55.0%
!! GGTCTCCTTGCCTTTTGGAG+AGG - contig25end:30358-30377 MsG0080048273.01.T01:CDS 55.0%
!! GGTGTTGCTGGCTTGTACAG+GGG - contig25end:31050-31069 MsG0080048273.01.T01:CDS 55.0%
!! TGCCTTTTGGAGAGGTCACC+AGG - contig25end:30366-30385 MsG0080048273.01.T01:CDS 55.0%
ACTGACGGTGACCAGTGGCA+TGG + contig25end:30986-31005 None:intergenic 60.0%
GGCCTGGTGACCTCTCCAAA+AGG + contig25end:30371-30390 None:intergenic 60.0%
TCAGTCCAGTGCCATGCCAC+TGG - contig25end:30972-30991 MsG0080048273.01.T01:CDS 60.0%
TGTGGCTTCAGGCAGTGCTG+CGG - contig25end:30887-30906 MsG0080048273.01.T01:CDS 60.0%
GGTGACCAGTGGCATGGCAC+TGG + contig25end:30980-30999 None:intergenic 65.0%
GTGGCTTCAGGCAGTGCTGC+GGG - contig25end:30888-30907 MsG0080048273.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
contig25end gene 30283 31775 30283 ID=MsG0080048274.01;Name=MsG0080048274.01
contig25end mRNA 30283 31775 30283 ID=MsG0080048274.01.T01;Parent=MsG0080048274.01;Name=MsG0080048274.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0.5|0.33|3|0|238
contig25end exon 31641 31775 31641 ID=MsG0080048274.01.T01:exon:59061;Parent=MsG0080048274.01.T01
contig25end exon 30889 31260 30889 ID=MsG0080048274.01.T01:exon:59060;Parent=MsG0080048274.01.T01
contig25end exon 30283 30492 30283 ID=MsG0080048274.01.T01:exon:59059;Parent=MsG0080048274.01.T01
contig25end CDS 31641 31775 31641 ID=MsG0080048274.01.T01:cds;Parent=MsG0080048274.01.T01
contig25end CDS 30889 31260 30889 ID=MsG0080048274.01.T01:cds;Parent=MsG0080048274.01.T01
contig25end CDS 30283 30492 30283 ID=MsG0080048274.01.T01:cds;Parent=MsG0080048274.01.T01
Gene Sequence

>MsG0080048274.01.T01

ATGATTAAAAGAGGAAACCTCAAAACACCATACCTTGGTTTGTCTAATACCTTTAAAAGAGTCTTTGCTGAAGAGGGTCTCCTTGCCTTTTGGAGAGGTCACCAGGCCAATGTTATTAGATATTTTCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATCTTTGGATATTCCAGAGAGAAAGATGGGTACATCAAGTGGTTTGCTGGGAATGTGGCTTCAGGCAGTGCTGCGGGAGCTACTACCTCAATACTTTTGTATCATTTGGACTTTGCACGTACAAGATTGGCCACTGATTCAGTCCAGTGCCATGCCACTGGTCACCGTCAGTTTAAAGGACTAATTCATGTATATCGTAAAACAATATCAAGTGATGGTGTTGCTGGCTTGTACAGGGGATTCGGTGTTTCAATATTGGGAATCACCATGTATCGAGGAATGTACTTTGGGATATATGACACCATGAAGCCTATTGTTTTAGTTGGACCTTTTGAGGGGAACTTCTTTGCTAGTTTCTTGTTAGGTTGGAGCATCACAACTGTATCTGGTGTCTGTGCATATCCTTTTGACACATTACGCCGTCGTATGATGCTAACCTCCGGGCACCAGAATAAGTATTATAATGCAATGCATGCATTCCGTGAGATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTCACTGCAACATGCTTCTAG

Protein sequence

>MsG0080048274.01.T01

MIKRGNLKTPYLGLSNTFKRVFAEEGLLAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSREKDGYIKWFAGNVASGSAAGATTSILLYHLDFARTRLATDSVQCHATGHRQFKGLIHVYRKTISSDGVAGLYRGFGVSILGITMYRGMYFGIYDTMKPIVLVGPFEGNFFASFLLGWSITTVSGVCAYPFDTLRRRMMLTSGHQNKYYNAMHAFREIVGQEGFLALFRGVTATCF*