AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048273.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048273.01.T01 MTR_8g107270 79.401 267 24 1 1 267 48 283 2.37e-154 433
MsG0080048273.01.T01 MTR_4g078545 47.584 269 110 1 1 269 105 342 1.72e-84 257
MsG0080048273.01.T01 MTR_3g028590 47.955 269 109 1 1 269 127 364 3.80e-84 257
MsG0080048273.01.T01 MTR_3g028590 47.955 269 109 1 1 269 123 360 5.62e-84 256
MsG0080048273.01.T01 MTR_2g098070 49.071 269 106 2 1 269 96 333 9.38e-84 255
MsG0080048273.01.T01 MTR_8g036880 48.148 270 108 2 1 269 132 370 3.57e-80 247
MsG0080048273.01.T01 MTR_3g104500 32.576 264 143 5 8 269 72 302 3.15e-44 152
MsG0080048273.01.T01 MTR_3g104600 29.562 274 136 10 12 265 69 305 3.38e-19 86.3
MsG0080048273.01.T01 MTR_3g107510 25.194 258 150 9 15 269 156 373 6.81e-18 82.8
MsG0080048273.01.T01 MTR_3g107510 28.571 161 95 4 11 164 247 394 4.43e-13 68.9
MsG0080048273.01.T01 MTR_5g009500 24.573 293 143 10 4 264 67 313 8.87e-17 79.3
MsG0080048273.01.T01 MTR_8g027975 24.820 278 159 10 6 264 82 328 1.57e-16 78.6
MsG0080048273.01.T01 MTR_7g064980 25.197 254 144 9 19 264 74 289 6.35e-16 76.6
MsG0080048273.01.T01 MTR_7g068340 26.230 244 124 8 24 263 139 330 3.77e-15 74.7
MsG0080048273.01.T01 MTR_8g096050 25.397 252 151 9 20 269 266 482 1.01e-14 73.9
MsG0080048273.01.T01 MTR_6g091800 24.345 267 150 9 13 265 54 282 3.02e-14 71.6
MsG0080048273.01.T01 MTR_6g091800 30.189 159 94 4 13 160 54 206 5.12e-14 70.5
MsG0080048273.01.T01 MTR_6g091800 30.189 159 94 5 13 160 54 206 6.66e-14 70.5
MsG0080048273.01.T01 MTR_1g012030 29.114 158 98 4 11 164 264 411 4.44e-13 68.9
MsG0080048273.01.T01 MTR_3g098460 24.390 246 149 8 21 264 245 455 6.76e-13 68.6
MsG0080048273.01.T01 MTR_8g090210 25.547 274 163 7 2 267 135 375 1.68e-12 67.0
MsG0080048273.01.T01 MTR_6g034145 27.950 161 93 3 14 160 1 152 2.83e-12 65.5
MsG0080048273.01.T01 MTR_6g092210 28.378 148 103 2 14 160 1 146 3.16e-12 65.5
MsG0080048273.01.T01 MTR_3g074490 23.828 256 164 7 19 269 154 383 4.95e-12 65.9
MsG0080048273.01.T01 MTR_4g114320 28.758 153 96 3 11 160 249 391 3.15e-11 63.5
MsG0080048273.01.T01 MTR_4g005330 20.588 272 163 5 14 269 33 267 4.65e-11 62.4
MsG0080048273.01.T01 MTR_4g119770 21.269 268 173 5 11 267 63 303 5.75e-11 62.4
MsG0080048273.01.T01 MTR_4g119770 26.490 151 104 2 11 160 63 207 9.06e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048273.01.T01 AT5G17400 62.921 267 68 1 1 267 44 279 1.58e-117 339
MsG0080048273.01.T01 AT4G28390 48.699 269 107 1 1 269 113 350 4.78e-84 256
MsG0080048273.01.T01 AT4G28390 48.699 269 107 1 1 269 113 350 4.78e-84 256
MsG0080048273.01.T01 AT5G13490 47.037 270 111 2 1 269 118 356 4.04e-79 244
MsG0080048273.01.T01 AT5G13490 47.037 270 111 2 1 269 118 356 4.04e-79 244
MsG0080048273.01.T01 AT3G08580 46.296 270 113 2 1 269 114 352 2.82e-77 239
MsG0080048273.01.T01 AT3G08580 46.296 270 113 2 1 269 114 352 2.82e-77 239
MsG0080048273.01.T01 AT5G56450 32.707 266 140 6 8 269 76 306 3.57e-41 144
MsG0080048273.01.T01 AT1G14560 29.562 274 135 12 12 265 61 296 3.66e-21 91.3
MsG0080048273.01.T01 AT1G14560 29.562 274 135 12 12 265 61 296 4.37e-21 91.3
MsG0080048273.01.T01 AT2G37890 27.273 253 141 7 19 264 91 307 3.29e-20 89.0
MsG0080048273.01.T01 AT5G01500 28.631 241 122 11 24 263 171 362 1.40e-18 85.1
MsG0080048273.01.T01 AT4G26180 26.592 267 147 10 12 265 55 285 6.73e-18 81.6
MsG0080048273.01.T01 AT3G51870 27.160 243 129 8 21 263 140 334 7.31e-18 82.8
MsG0080048273.01.T01 AT4G26180 26.592 267 147 10 12 265 55 285 7.94e-18 82.0
MsG0080048273.01.T01 AT3G53940 27.237 257 134 10 20 264 120 335 1.08e-16 79.3
MsG0080048273.01.T01 AT3G21390 24.188 277 176 6 2 267 77 330 1.28e-16 79.0
MsG0080048273.01.T01 AT3G21390 24.188 277 176 6 2 267 55 308 1.40e-16 78.6
MsG0080048273.01.T01 AT4G01100 24.915 293 140 9 6 264 23 269 1.59e-16 78.2
MsG0080048273.01.T01 AT3G55640 25.969 258 136 11 20 264 85 300 1.97e-16 78.2
MsG0080048273.01.T01 AT3G55640 25.969 258 136 11 20 264 85 300 1.97e-16 78.2
MsG0080048273.01.T01 AT4G01100 24.915 293 140 9 6 264 73 319 2.77e-16 78.2
MsG0080048273.01.T01 AT3G55640 29.801 151 86 5 19 160 84 223 1.75e-15 74.7
MsG0080048273.01.T01 AT3G55640 29.801 151 86 5 19 160 84 223 1.75e-15 74.7
MsG0080048273.01.T01 AT1G14560 29.469 207 98 8 75 265 24 198 1.11e-14 72.0
MsG0080048273.01.T01 AT4G01100 25.000 292 155 11 6 264 73 333 1.78e-14 72.8
MsG0080048273.01.T01 AT5G61810 25.098 255 146 7 12 264 96 307 1.24e-13 70.1
MsG0080048273.01.T01 AT5G61810 25.098 255 146 7 12 264 239 450 2.85e-13 69.7
MsG0080048273.01.T01 AT3G53940 28.667 150 89 3 19 160 119 258 4.37e-13 68.2
MsG0080048273.01.T01 AT5G48970 22.183 284 170 7 4 267 60 312 5.87e-13 68.2
MsG0080048273.01.T01 AT5G51050 23.715 253 153 7 14 264 256 470 4.97e-12 65.9
MsG0080048273.01.T01 AT5G64970 23.462 260 166 8 14 267 44 276 2.14e-11 63.5
MsG0080048273.01.T01 AT5G64970 23.462 260 166 8 14 267 168 400 3.47e-11 63.2
MsG0080048273.01.T01 AT5G64970 23.462 260 166 8 14 267 168 400 3.84e-11 63.2

Find 86 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACAGGCAATGGGAAAATA+TGG 0.202884 contig25end:-30819 MsG0080048273.01.T01:CDS
TTGCATTATAATACTTATTC+TGG 0.231839 contig25end:+30360 None:intergenic
GGGATTCGGTGTTTCAATAT+TGG 0.231853 contig25end:-30966 MsG0080048273.01.T01:CDS
AAGAGGGTCTCCTTGCCTTT+TGG 0.234640 contig25end:-31683 MsG0080048273.01.T01:CDS
GGTTACTTCAAAAGCATCTT+TGG 0.242168 contig25end:-31217 MsG0080048273.01.T01:CDS
AATTGGTGCCACTGCAGTTT+TGG 0.258307 contig25end:+31811 None:intergenic
AATAATAATTCATTCGATTC+AGG 0.263921 contig25end:-32039 MsG0080048273.01.T01:intron
ACTGGTCACCGTCAGTTTAA+AGG 0.285006 contig25end:-31046 MsG0080048273.01.T01:CDS
GGATTCGGTGTTTCAATATT+GGG 0.326349 contig25end:-30965 MsG0080048273.01.T01:CDS
TGTATCGTTCTTATTTGTTT+CGG 0.330486 contig25end:+32174 None:intergenic
AGTCACTGCAACATGCTTCT+AGG 0.335964 contig25end:-30282 None:intergenic
AACTAAAACAATAGGCTTCA+TGG 0.352724 contig25end:+30901 None:intergenic
TCGAATGAATTATTATTAGT+TGG 0.365656 contig25end:+32045 None:intergenic
GGGTACATCAAGTGGTTTGC+TGG 0.371317 contig25end:-31175 MsG0080048273.01.T01:CDS
TAAAGCTTCACTCTTTCAAT+TGG 0.378683 contig25end:+31794 None:intergenic
TGGAGCATCACAACTGTATC+TGG 0.393342 contig25end:-30440 MsG0080048273.01.T01:CDS
TTCCCAGATACATCCCTTGT+TGG 0.401396 contig25end:-30585 MsG0080048273.01.T01:intron
AAAGGTCCAACTAAAACAAT+AGG 0.409592 contig25end:+30893 None:intergenic
GTGGGAGGGAAGAAGAGATA+TGG 0.415292 contig25end:-31897 MsG0080048273.01.T01:five_prime_UTR
GGACTTTGCACGTACAAGAT+TGG 0.415555 contig25end:-31095 MsG0080048273.01.T01:CDS
TTTGCTGGGAATGTGGCTTC+AGG 0.417717 contig25end:-31160 MsG0080048273.01.T01:CDS
ATGGTGTTGCTGGCTTGTAC+AGG 0.427812 contig25end:-30988 MsG0080048273.01.T01:CDS
ATATCAAGTGATGGTGTTGC+TGG 0.431324 contig25end:-30998 MsG0080048273.01.T01:CDS
TGTATCGAGGAATGTACTTT+GGG 0.438762 contig25end:-30934 MsG0080048273.01.T01:CDS
CACAGGCAATGGGAAAATAT+GGG 0.441380 contig25end:-30818 MsG0080048273.01.T01:CDS
GATGTACCCATCTTTCTCTC+TGG 0.444325 contig25end:+31189 None:intergenic
GTATAAATGCTTACCTCAAA+AGG 0.445098 contig25end:+30875 None:intergenic
GATCTATAATTCACAGGCAA+TGG 0.454259 contig25end:-30829 MsG0080048273.01.T01:CDS
GCTGGCTTGTACAGGGGATT+CGG 0.454958 contig25end:-30980 MsG0080048273.01.T01:CDS
CATGCATTCCGTGAGATTGT+TGG 0.459314 contig25end:-30335 MsG0080048273.01.T01:CDS
GTGGCTTCAGGCAGTGCTGC+GGG 0.459875 contig25end:-31148 MsG0080048273.01.T01:CDS
TTTCAAACCATCAGGATTAG+TGG 0.462352 contig25end:-31916 MsG0080048273.01.T01:intron
CGTGAGATTGTTGGACAAGA+GGG 0.488183 contig25end:-30326 MsG0080048273.01.T01:CDS
ATCTATAATTCACAGGCAAT+GGG 0.489483 contig25end:-30828 MsG0080048273.01.T01:CDS
ATGTATCGAGGAATGTACTT+TGG 0.489826 contig25end:-30935 MsG0080048273.01.T01:CDS
TAAAAGAGTCTTTGCTGAAG+AGG 0.493467 contig25end:-31700 MsG0080048273.01.T01:CDS
ATGAATTTATGTCAGAGCAT+TGG 0.503935 contig25end:-30550 MsG0080048273.01.T01:intron
GTCACTGCAACATGCTTCTA+GGG 0.504029 contig25end:-30281 None:intergenic
ATAATACTTATTCTGGTGCC+CGG 0.509415 contig25end:+30367 None:intergenic
AAAAGAGTCTTTGCTGAAGA+GGG 0.517416 contig25end:-31699 MsG0080048273.01.T01:CDS
CGACGGCGTAATGTGTCAAA+AGG 0.519765 contig25end:+30404 None:intergenic
GGATATTCCAGAGAGAAAGA+TGG 0.522046 contig25end:-31196 MsG0080048273.01.T01:CDS
ATCGTTCTTATTTGTTTCGG+AGG 0.525193 contig25end:+32177 None:intergenic
GGTGTTGCTGGCTTGTACAG+GGG 0.525521 contig25end:-30986 MsG0080048273.01.T01:CDS
AATATCTAATAACATTGGCC+TGG 0.525661 contig25end:+31652 None:intergenic
TGGTGTTGCTGGCTTGTACA+GGG 0.527675 contig25end:-30987 MsG0080048273.01.T01:CDS
GGTGACCAGTGGCATGGCAC+TGG 0.528489 contig25end:+31059 None:intergenic
GGTTTCTTAGCTCTATTTCG+AGG 0.528923 contig25end:-30305 MsG0080048273.01.T01:CDS
CAAAGCGAAATGATTAAAAG+AGG 0.529225 contig25end:-31762 MsG0080048273.01.T01:exon
CGTCGTATGATGCTAACCTC+CGG 0.530080 contig25end:-30386 MsG0080048273.01.T01:CDS
TTCAAACCATCAGGATTAGT+GGG 0.533629 contig25end:-31915 MsG0080048273.01.T01:intron
AACATAGATCTATAATTCAC+AGG 0.536439 contig25end:-30835 MsG0080048273.01.T01:CDS
GGCCTGGTGACCTCTCCAAA+AGG 0.537477 contig25end:+31668 None:intergenic
TCAGTCCAGTGCCATGCCAC+TGG 0.539129 contig25end:-31064 MsG0080048273.01.T01:CDS
GATATTCCAGAGAGAAAGAT+GGG 0.540943 contig25end:-31195 MsG0080048273.01.T01:CDS
CCGTGAGATTGTTGGACAAG+AGG 0.542206 contig25end:-30327 MsG0080048273.01.T01:CDS
GTCGTATGATGCTAACCTCC+GGG 0.550555 contig25end:-30385 MsG0080048273.01.T01:CDS
AAAGTACATTCCTCGATACA+TGG 0.553101 contig25end:+30937 None:intergenic
TGTGGCTTCAGGCAGTGCTG+CGG 0.558659 contig25end:-31149 MsG0080048273.01.T01:CDS
TAAAGGTATTAGACAAACCA+AGG 0.560990 contig25end:+31721 None:intergenic
GGTACATCAAGTGGTTTGCT+GGG 0.566321 contig25end:-31174 MsG0080048273.01.T01:CDS
CAAATGATACAAAAGTATTG+AGG 0.568033 contig25end:+31117 None:intergenic
AAACAAATAAGAACGATACA+TGG 0.570023 contig25end:-32171 MsG0080048273.01.T01:five_prime_UTR
AACCATCAGGATTAGTGGGA+GGG 0.571863 contig25end:-31911 MsG0080048273.01.T01:intron
CGTAAAACAATATCAAGTGA+TGG 0.574072 contig25end:-31007 MsG0080048273.01.T01:CDS
AACCTCAAAACACCATACCT+TGG 0.575189 contig25end:-31738 MsG0080048273.01.T01:CDS
AAAGAATCACCCACCTGTGT+GGG 0.587870 contig25end:+31627 None:intergenic
GGGAAAATATCTAATAACAT+TGG 0.589711 contig25end:+31647 None:intergenic
GTATTAGACAAACCAAGGTA+TGG 0.595810 contig25end:+31726 None:intergenic
CAAGTGGTTTGCTGGGAATG+TGG 0.602125 contig25end:-31167 MsG0080048273.01.T01:CDS
AGAAAGATGGGTACATCAAG+TGG 0.605042 contig25end:-31183 MsG0080048273.01.T01:CDS
GAATTAGTCCTTTAAACTGA+CGG 0.606819 contig25end:+31038 None:intergenic
ATCAAAATGCTATACCAACA+AGG 0.610246 contig25end:+30571 None:intergenic
CCTCTTGTCCAACAATCTCA+CGG 0.613033 contig25end:+30327 None:intergenic
GGTGACCTCTCCAAAAGGCA+AGG 0.614061 contig25end:+31673 None:intergenic
TCAAAATGCTATACCAACAA+GGG 0.622515 contig25end:+30572 None:intergenic
CAAAGAATCACCCACCTGTG+TGG 0.626617 contig25end:+31626 None:intergenic
AAACCATCAGGATTAGTGGG+AGG 0.629391 contig25end:-31912 MsG0080048273.01.T01:intron
ACTGACGGTGACCAGTGGCA+TGG 0.636991 contig25end:+31053 None:intergenic
ACAGGCAATGGGAAAATATG+GGG 0.642688 contig25end:-30817 MsG0080048273.01.T01:intron
TTGGGAATCACCATGTATCG+AGG 0.659477 contig25end:-30947 MsG0080048273.01.T01:CDS
AATCATATCCAAAACTGCAG+TGG 0.672395 contig25end:-31819 MsG0080048273.01.T01:five_prime_UTR
TTTAAACTGACGGTGACCAG+TGG 0.674236 contig25end:+31048 None:intergenic
ATGGCACTGGACTGAATCAG+TGG 0.678456 contig25end:+31072 None:intergenic
ATACTTATTCTGGTGCCCGG+AGG 0.698949 contig25end:+30370 None:intergenic
CGGAGGTTAGCATCATACGA+CGG 0.749578 contig25end:+30387 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAAAAATAAAA+TGG - contig25end:30373-30392 MsG0080048273.01.T01:CDS 0.0%
!! ATAAAAAAAAAATAAAATGG+CGG - contig25end:30376-30395 MsG0080048273.01.T01:CDS 10.0%
!! TAATATAAAAACTCTAATAT+TGG + contig25end:31744-31763 None:intergenic 10.0%
!! AAGATGTATGTTAAAATTAA+AGG + contig25end:31796-31815 None:intergenic 15.0%
!! TATGTTAAAATTAAAGGTAA+GGG + contig25end:31790-31809 None:intergenic 15.0%
!! AATAATAATTCATTCGATTC+AGG - contig25end:30438-30457 MsG0080048273.01.T01:CDS 20.0%
!! ACAAAAGATATTGAATGAAT+CGG + contig25end:30506-30525 None:intergenic 20.0%
!! CATTACAAAACAAGTATAAT+AGG + contig25end:30939-30958 None:intergenic 20.0%
!! GTATGTTAAAATTAAAGGTA+AGG + contig25end:31791-31810 None:intergenic 20.0%
!! TCGAATGAATTATTATTAGT+TGG + contig25end:30435-30454 None:intergenic 20.0%
!! TTGAAATTGAGAATTATTTG+AGG + contig25end:31080-31099 None:intergenic 20.0%
!! TTGCATTATAATACTTATTC+TGG + contig25end:32120-32139 None:intergenic 20.0%
!! TTTGATTGGAATACAAAATA+CGG + contig25end:31148-31167 None:intergenic 20.0%
!!! ATTTTCAAAGGATTTTGTAA+TGG - contig25end:30622-30641 MsG0080048273.01.T01:intron 20.0%
!!! TACTTGTTTTGTAATGTTTT+TGG - contig25end:30943-30962 MsG0080048273.01.T01:CDS 20.0%
!!! TTTTCAAAGGATTTTGTAAT+GGG - contig25end:30623-30642 MsG0080048273.01.T01:intron 20.0%
! AAACAAATAAGAACGATACA+TGG - contig25end:30306-30325 MsG0080048273.01.T01:CDS 25.0%
! AACATAGATCTATAATTCAC+AGG - contig25end:31642-31661 MsG0080048273.01.T01:CDS 25.0%
! GAATGAAAAGTTAAGAAGTA+GGG + contig25end:30466-30485 None:intergenic 25.0%
! GGGAAAATATCTAATAACAT+TGG + contig25end:30833-30852 None:intergenic 25.0%
! TATTTGAGCAAACAGTTAAT+TGG - contig25end:31209-31228 MsG0080048273.01.T01:CDS 25.0%
! TGAATGAAAAGTTAAGAAGT+AGG + contig25end:30467-30486 None:intergenic 25.0%
! TTGATTGGAATACAAAATAC+GGG + contig25end:31147-31166 None:intergenic 25.0%
!! AGAATCAGAATCATTTTCAA+AGG - contig25end:30610-30629 MsG0080048273.01.T01:intron 25.0%
!! CTCAATACTTTTGTATCATT+TGG - contig25end:31361-31380 MsG0080048273.01.T01:intron 25.0%
!! TATTATGCTGCTTATATTGA+TGG - contig25end:31759-31778 MsG0080048273.01.T01:exon 25.0%
!! TGTATCGTTCTTATTTGTTT+CGG + contig25end:30306-30325 None:intergenic 25.0%
!!! CAAATGATACAAAAGTATTG+AGG + contig25end:31363-31382 None:intergenic 25.0%
!!! CTTTTGATTTATATTCTGCA+GGG - contig25end:31986-32005 MsG0080048273.01.T01:intron 25.0%
!!! TCTTTTGATTTATATTCTGC+AGG - contig25end:31985-32004 MsG0080048273.01.T01:intron 25.0%
!!! TTTTGATTTATATTCTGCAG+GGG - contig25end:31987-32006 MsG0080048273.01.T01:intron 25.0%
AAAGGTCCAACTAAAACAAT+AGG + contig25end:31587-31606 None:intergenic 30.0%
AACTAAAACAATAGGCTTCA+TGG + contig25end:31579-31598 None:intergenic 30.0%
AATATCTAATAACATTGGCC+TGG + contig25end:30828-30847 None:intergenic 30.0%
AATTAGTTCACTAAAAGTCC+AGG - contig25end:31016-31035 MsG0080048273.01.T01:CDS 30.0%
ACTAAAACTAATGTCCATAG+AGG + contig25end:31054-31073 None:intergenic 30.0%
AGTGAACTAATTACAACACA+CGG + contig25end:31008-31027 None:intergenic 30.0%
ATCAAAATGCTATACCAACA+AGG + contig25end:31909-31928 None:intergenic 30.0%
ATCTATAATTCACAGGCAAT+GGG - contig25end:31649-31668 MsG0080048273.01.T01:CDS 30.0%
ATGAATTTATGTCAGAGCAT+TGG - contig25end:31927-31946 MsG0080048273.01.T01:intron 30.0%
CAAAGCGAAATGATTAAAAG+AGG - contig25end:30715-30734 MsG0080048273.01.T01:intron 30.0%
CAAGTTAGACAACAGTAATT+TGG - contig25end:31834-31853 MsG0080048273.01.T01:five_prime_UTR 30.0%
CGTAAAACAATATCAAGTGA+TGG - contig25end:31470-31489 MsG0080048273.01.T01:intron 30.0%
GAATTAGTCCTTTAAACTGA+CGG + contig25end:31442-31461 None:intergenic 30.0%
GTATAAATGCTTACCTCAAA+AGG + contig25end:31605-31624 None:intergenic 30.0%
TAAAGCTTCACTCTTTCAAT+TGG + contig25end:30686-30705 None:intergenic 30.0%
TCAAAATGCTATACCAACAA+GGG + contig25end:31908-31927 None:intergenic 30.0%
! CAAACAGTTAATTGGTCTAT+AGG - contig25end:31217-31236 MsG0080048273.01.T01:CDS 30.0%
! CTCTTTTAATCATTTCGCTT+TGG + contig25end:30717-30736 None:intergenic 30.0%
! GCTTTCAATTTTGCATTCAA+AGG - contig25end:31239-31258 MsG0080048273.01.T01:CDS 30.0%
! TATTAGATATTTTCCCACAC+AGG - contig25end:30837-30856 MsG0080048273.01.T01:CDS 30.0%
! TTCAGCAAAGACTCTTTTAA+AGG + contig25end:30776-30795 None:intergenic 30.0%
! TTCTTTGCTAGTTTCTTGTT+AGG - contig25end:32013-32032 MsG0080048273.01.T01:intron 30.0%
!! TAAAGGTATTAGACAAACCA+AGG + contig25end:30759-30778 None:intergenic 30.0%
!!! ATGAAGCCTATTGTTTTAGT+TGG - contig25end:31578-31597 MsG0080048273.01.T01:intron 30.0%
AAAAGAGTCTTTGCTGAAGA+GGG - contig25end:30778-30797 MsG0080048273.01.T01:intron 35.0%
AAAGTACATTCCTCGATACA+TGG + contig25end:31543-31562 None:intergenic 35.0%
AAGACTCATATTCCAATGCA+AGG + contig25end:31969-31988 None:intergenic 35.0%
AATCATATCCAAAACTGCAG+TGG - contig25end:30658-30677 MsG0080048273.01.T01:intron 35.0%
AGACTCATATTCCAATGCAA+GGG + contig25end:31968-31987 None:intergenic 35.0%
ATAATACTTATTCTGGTGCC+CGG + contig25end:32113-32132 None:intergenic 35.0%
ATCGATTGTTTCAAACCATC+AGG - contig25end:30553-30572 MsG0080048273.01.T01:CDS 35.0%
ATGTATCGAGGAATGTACTT+TGG - contig25end:31542-31561 MsG0080048273.01.T01:intron 35.0%
GATATTCCAGAGAGAAAGAT+GGG - contig25end:31282-31301 MsG0080048273.01.T01:intron 35.0%
GATCTATAATTCACAGGCAA+TGG - contig25end:31648-31667 MsG0080048273.01.T01:CDS 35.0%
GGGTTAATAATTGCTTCTCT+TGG - contig25end:31680-31699 MsG0080048273.01.T01:CDS 35.0%
GTATTAGACAAACCAAGGTA+TGG + contig25end:30754-30773 None:intergenic 35.0%
GTGAACTAATTACAACACAC+GGG + contig25end:31007-31026 None:intergenic 35.0%
GTTTATTTATGCCCTTGCAT+TGG - contig25end:31954-31973 MsG0080048273.01.T01:intron 35.0%
TAAAAGAGTCTTTGCTGAAG+AGG - contig25end:30777-30796 MsG0080048273.01.T01:intron 35.0%
TATTTACCTCATCTTTGAGC+TGG - contig25end:30897-30916 MsG0080048273.01.T01:CDS 35.0%
TGTATCGAGGAATGTACTTT+GGG - contig25end:31543-31562 MsG0080048273.01.T01:intron 35.0%
TTTCAAACCATCAGGATTAG+TGG - contig25end:30561-30580 MsG0080048273.01.T01:CDS 35.0%
! AAAGACTGTTATTTGAGAGC+AGG + contig25end:31172-31191 None:intergenic 35.0%
! AAGACTGTTATTTGAGAGCA+GGG + contig25end:31171-31190 None:intergenic 35.0%
! ATCGTTCTTATTTGTTTCGG+AGG + contig25end:30303-30322 None:intergenic 35.0%
! TTCAAACCATCAGGATTAGT+GGG - contig25end:30562-30581 MsG0080048273.01.T01:CDS 35.0%
! TTGCTAGTTTCTTGTTAGGT+TGG - contig25end:32017-32036 MsG0080048273.01.T01:intron 35.0%
! TTTTTCGTCTGTTCCATGTT+AGG - contig25end:31710-31729 MsG0080048273.01.T01:CDS 35.0%
!! GGATTCGGTGTTTCAATATT+GGG - contig25end:31512-31531 MsG0080048273.01.T01:intron 35.0%
!! GGTTACTTCAAAAGCATCTT+TGG - contig25end:31260-31279 MsG0080048273.01.T01:intron 35.0%
!! TCAAAGGATTTTGTAATGGG+AGG - contig25end:30626-30645 MsG0080048273.01.T01:intron 35.0%
!!! TGTTTTAGTTGGACCTTTTG+AGG - contig25end:31589-31608 MsG0080048273.01.T01:intron 35.0%
AACCTCAAAACACCATACCT+TGG - contig25end:30739-30758 MsG0080048273.01.T01:intron 40.0%
ACAAGTGACAATGAACACAC+AGG + contig25end:31114-31133 None:intergenic 40.0%
ACAGGCAATGGGAAAATATG+GGG - contig25end:31660-31679 MsG0080048273.01.T01:CDS 40.0%
AGAAAGATGGGTACATCAAG+TGG - contig25end:31294-31313 MsG0080048273.01.T01:intron 40.0%
ATACCAACAAGGGATGTATC+TGG + contig25end:31898-31917 None:intergenic 40.0%
ATTGGCATGCATACCTAACA+TGG + contig25end:31726-31745 None:intergenic 40.0%
ATTTGAGAGCAGGGTTTGAT+TGG + contig25end:31162-31181 None:intergenic 40.0%
CAAGTGACAATGAACACACA+GGG + contig25end:31113-31132 None:intergenic 40.0%
CACAGGCAATGGGAAAATAT+GGG - contig25end:31659-31678 MsG0080048273.01.T01:CDS 40.0%
CATTTACCAGCTCAAAGATG+AGG + contig25end:30906-30925 None:intergenic 40.0%
CTCATCTTTGAGCTGGTAAA+TGG - contig25end:30904-30923 MsG0080048273.01.T01:CDS 40.0%
GGATATTCCAGAGAGAAAGA+TGG - contig25end:31281-31300 MsG0080048273.01.T01:intron 40.0%
TACCAACAAGGGATGTATCT+GGG + contig25end:31897-31916 None:intergenic 40.0%
TCACAGGCAATGGGAAAATA+TGG - contig25end:31658-31677 MsG0080048273.01.T01:CDS 40.0%
! AACCAAGGTATGGTGTTTTG+AGG + contig25end:30744-30763 None:intergenic 40.0%
! AATGGCGGTCTTGATTTTGT+TGG - contig25end:30391-30410 MsG0080048273.01.T01:CDS 40.0%
! AGATATTTTCCCACACAGGT+GGG - contig25end:30841-30860 MsG0080048273.01.T01:CDS 40.0%
! TAGATATTTTCCCACACAGG+TGG - contig25end:30840-30859 MsG0080048273.01.T01:CDS 40.0%
!! ATATCAAGTGATGGTGTTGC+TGG - contig25end:31479-31498 MsG0080048273.01.T01:intron 40.0%
!! GGGATTCGGTGTTTCAATAT+TGG - contig25end:31511-31530 MsG0080048273.01.T01:intron 40.0%
!! GGTTTCTTAGCTCTATTTCG+AGG - contig25end:32172-32191 MsG0080048273.01.T01:five_prime_UTR 40.0%
AAAGAATCACCCACCTGTGT+GGG + contig25end:30853-30872 None:intergenic 45.0%
ACTGGTCACCGTCAGTTTAA+AGG - contig25end:31431-31450 MsG0080048273.01.T01:intron 45.0%
AGTCACTGCAACATGCTTCT+AGG - contig25end:32195-32214 MsG0080048273.01.T01:five_prime_UTR 45.0%
CATGCATTCCGTGAGATTGT+TGG - contig25end:32142-32161 MsG0080048273.01.T01:five_prime_UTR 45.0%
CCTCTTGTCCAACAATCTCA+CGG + contig25end:32153-32172 None:intergenic 45.0%
CGTGAGATTGTTGGACAAGA+GGG - contig25end:32151-32170 MsG0080048273.01.T01:five_prime_UTR 45.0%
GATGTACCCATCTTTCTCTC+TGG + contig25end:31291-31310 None:intergenic 45.0%
GGACTTTGCACGTACAAGAT+TGG - contig25end:31382-31401 MsG0080048273.01.T01:intron 45.0%
GGTCAAATCTCTCTCCTCTA+TGG - contig25end:31037-31056 MsG0080048273.01.T01:CDS 45.0%
TAGAGGAGAGAGATTTGACC+TGG + contig25end:31037-31056 None:intergenic 45.0%
TTCCCAGATACATCCCTTGT+TGG - contig25end:31892-31911 MsG0080048273.01.T01:five_prime_UTR 45.0%
TTGGGAATCACCATGTATCG+AGG - contig25end:31530-31549 MsG0080048273.01.T01:intron 45.0%
TTTAAACTGACGGTGACCAG+TGG + contig25end:31432-31451 None:intergenic 45.0%
! AAACCATCAGGATTAGTGGG+AGG - contig25end:30565-30584 MsG0080048273.01.T01:CDS 45.0%
! AACCATCAGGATTAGTGGGA+GGG - contig25end:30566-30585 MsG0080048273.01.T01:CDS 45.0%
! TGGAGCATCACAACTGTATC+TGG - contig25end:32037-32056 MsG0080048273.01.T01:intron 45.0%
!! GGTACATCAAGTGGTTTGCT+GGG - contig25end:31303-31322 MsG0080048273.01.T01:intron 45.0%
!!! AATTGGTGCCACTGCAGTTT+TGG + contig25end:30669-30688 None:intergenic 45.0%
ATACTTATTCTGGTGCCCGG+AGG + contig25end:32110-32129 None:intergenic 50.0%
CAAAGAATCACCCACCTGTG+TGG + contig25end:30854-30873 None:intergenic 50.0%
CCGTGAGATTGTTGGACAAG+AGG - contig25end:32150-32169 MsG0080048273.01.T01:five_prime_UTR 50.0%
CGACGGCGTAATGTGTCAAA+AGG + contig25end:32076-32095 None:intergenic 50.0%
CGGAGGTTAGCATCATACGA+CGG + contig25end:32093-32112 None:intergenic 50.0%
CGTCGTATGATGCTAACCTC+CGG - contig25end:32091-32110 MsG0080048273.01.T01:five_prime_UTR 50.0%
GTCGTATGATGCTAACCTCC+GGG - contig25end:32092-32111 MsG0080048273.01.T01:five_prime_UTR 50.0%
GTGGGAGGGAAGAAGAGATA+TGG - contig25end:30580-30599 MsG0080048273.01.T01:CDS 50.0%
TTCCCTCCCACTAATCCTGA+TGG + contig25end:30571-30590 None:intergenic 50.0%
TTTGCTGGGAATGTGGCTTC+AGG - contig25end:31317-31336 MsG0080048273.01.T01:intron 50.0%
! AAGAGGGTCTCCTTGCCTTT+TGG - contig25end:30794-30813 MsG0080048273.01.T01:intron 50.0%
! ATGGCACTGGACTGAATCAG+TGG + contig25end:31408-31427 None:intergenic 50.0%
! GGGTACATCAAGTGGTTTGC+TGG - contig25end:31302-31321 MsG0080048273.01.T01:intron 50.0%
!! ATGGTGTTGCTGGCTTGTAC+AGG - contig25end:31489-31508 MsG0080048273.01.T01:intron 50.0%
!! CAAGTGGTTTGCTGGGAATG+TGG - contig25end:31310-31329 MsG0080048273.01.T01:intron 50.0%
!! TGGTGTTGCTGGCTTGTACA+GGG - contig25end:31490-31509 MsG0080048273.01.T01:intron 50.0%
GGTGACCTCTCCAAAAGGCA+AGG + contig25end:30807-30826 None:intergenic 55.0%
!! GCTGGCTTGTACAGGGGATT+CGG - contig25end:31497-31516 MsG0080048273.01.T01:intron 55.0%
!! GGTCTCCTTGCCTTTTGGAG+AGG - contig25end:30799-30818 MsG0080048273.01.T01:intron 55.0%
!! GGTGTTGCTGGCTTGTACAG+GGG - contig25end:31491-31510 MsG0080048273.01.T01:intron 55.0%
!! TGCCTTTTGGAGAGGTCACC+AGG - contig25end:30807-30826 MsG0080048273.01.T01:intron 55.0%
ACTGACGGTGACCAGTGGCA+TGG + contig25end:31427-31446 None:intergenic 60.0%
GGCCTGGTGACCTCTCCAAA+AGG + contig25end:30812-30831 None:intergenic 60.0%
TCAGTCCAGTGCCATGCCAC+TGG - contig25end:31413-31432 MsG0080048273.01.T01:intron 60.0%
TGTGGCTTCAGGCAGTGCTG+CGG - contig25end:31328-31347 MsG0080048273.01.T01:intron 60.0%
GGTGACCAGTGGCATGGCAC+TGG + contig25end:31421-31440 None:intergenic 65.0%
GTGGCTTCAGGCAGTGCTGC+GGG - contig25end:31329-31348 MsG0080048273.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
contig25end gene 30283 32216 30283 ID=MsG0080048273.01;Name=MsG0080048273.01
contig25end mRNA 30283 32216 30283 ID=MsG0080048273.01.T01;Parent=MsG0080048273.01;Name=MsG0080048273.01.T01;_AED=0.21;_eAED=0.21;_QI=326|0.5|0.4|0.8|0.25|0.4|5|0|269
contig25end exon 32040 32216 32040 ID=MsG0080048273.01.T01:exon:13019;Parent=MsG0080048273.01.T01
contig25end exon 31641 31924 31641 ID=MsG0080048273.01.T01:exon:13020;Parent=MsG0080048273.01.T01
contig25end exon 30818 31260 30818 ID=MsG0080048273.01.T01:exon:13021;Parent=MsG0080048273.01.T01
contig25end exon 30551 30600 30551 ID=MsG0080048273.01.T01:exon:13022;Parent=MsG0080048273.01.T01
contig25end exon 30283 30464 30283 ID=MsG0080048273.01.T01:exon:13023;Parent=MsG0080048273.01.T01
contig25end five_prime_UTR 32040 32216 32040 ID=MsG0080048273.01.T01:five_prime_utr;Parent=MsG0080048273.01.T01
contig25end five_prime_UTR 31776 31924 31776 ID=MsG0080048273.01.T01:five_prime_utr;Parent=MsG0080048273.01.T01
contig25end CDS 31641 31775 31641 ID=MsG0080048273.01.T01:cds;Parent=MsG0080048273.01.T01
contig25end CDS 30818 31260 30818 ID=MsG0080048273.01.T01:cds;Parent=MsG0080048273.01.T01
contig25end CDS 30551 30600 30551 ID=MsG0080048273.01.T01:cds;Parent=MsG0080048273.01.T01
contig25end CDS 30283 30464 30283 ID=MsG0080048273.01.T01:cds;Parent=MsG0080048273.01.T01
Gene Sequence

>MsG0080048273.01.T01

ATGATTAAAAGAGGAAACCTCAAAACACCATACCTTGGTTTGTCTAATACCTTTAAAAGAGTCTTTGCTGAAGAGGGTCTCCTTGCCTTTTGGAGAGGTCACCAGGCCAATGTTATTAGATATTTTCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATCTTTGGATATTCCAGAGAGAAAGATGGGTACATCAAGTGGTTTGCTGGGAATGTGGCTTCAGGCAGTGCTGCGGGAGCTACTACCTCAATACTTTTGTATCATTTGGACTTTGCACGTACAAGATTGGCCACTGATTCAGTCCAGTGCCATGCCACTGGTCACCGTCAGTTTAAAGGACTAATTCATGTATATCGTAAAACAATATCAAGTGATGGTGTTGCTGGCTTGTACAGGGGATTCGGTGTTTCAATATTGGGAATCACCATGTATCGAGGAATGTACTTTGGGATATATGACACCATGAAGCCTATTGTTTTAGTTGGACCTTTTGAGGTAAGCATTTATACATTTATAATTACATTACAACATAGATCTATAATTCACAGGCAATGGGAAAATATGGGATACATCCCTTGTTGGTATAGCATTTTGATGAATTTATGTCAGAGCATTGGTTGGAGCATCACAACTGTATCTGGTGTCTGTGCATATCCTTTTGACACATTACGCCGTCGTATGATGCTAACCTCCGGGCACCAGAATAAGTATTATAATGCAATGCATGCATTCCGTGAGATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTCACTGCAACATGCTTCTAG

Protein sequence

>MsG0080048273.01.T01

MIKRGNLKTPYLGLSNTFKRVFAEEGLLAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSREKDGYIKWFAGNVASGSAAGATTSILLYHLDFARTRLATDSVQCHATGHRQFKGLIHVYRKTISSDGVAGLYRGFGVSILGITMYRGMYFGIYDTMKPIVLVGPFEVSIYTFIITLQHRSIIHRQWENMGYIPCWYSILMNLCQSIGWSITTVSGVCAYPFDTLRRRMMLTSGHQNKYYNAMHAFREIVGQEGFLALFRGVTATCF*