Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048923.01.T02 | XP_039686534.1 | 91.667 | 432 | 36 | 0 | 1 | 432 | 1 | 432 | 0 | 809 |
| MsG0080048923.01.T01 | XP_039686534.1 | 77.546 | 432 | 35 | 2 | 1 | 370 | 1 | 432 | 0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048923.01.T01 | Q9C6A1 | 42.092 | 411 | 175 | 3 | 22 | 370 | 36 | 445 | 9.80E-109 | 328 |
| MsG0080048923.01.T02 | Q9C6A1 | 52.311 | 411 | 195 | 1 | 22 | 432 | 36 | 445 | 1.61E-154 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048923.01.T01 | A0A396JD16 | 77.546 | 432 | 35 | 2 | 1 | 370 | 1 | 432 | 0.0 | 652 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048923.01 | MsG0180004926.01 | 0.805652 | 1.203845e-49 | 6.404161e-47 |
| MsG0080048923.01 | MsG0180005050.01 | 0.817647 | 2.958999e-52 | 2.167224e-49 |
| MsG0080048923.01 | MsG0280009748.01 | 0.801871 | 7.340142e-49 | 3.544131e-46 |
| MsG0080048923.01 | MsG0380015980.01 | 0.806995 | 6.272775e-50 | 3.453776e-47 |
| MsG0080048923.01 | MsG0380016387.01 | 0.807943 | 3.948158e-50 | 2.228182e-47 |
| MsG0080048923.01 | MsG0480021918.01 | 0.800253 | 1.571792e-48 | 7.284402e-46 |
| MsG0080048923.01 | MsG0580024781.01 | 0.810838 | 9.447295e-51 | 5.756039e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048923.01.T02 | MTR_2g061450 | 91.204 | 432 | 38 | 0 | 1 | 432 | 1 | 432 | 0.0 | 807 |
| MsG0080048923.01.T02 | MTR_2g060620 | 86.486 | 111 | 13 | 1 | 302 | 412 | 61 | 169 | 1.22e-60 | 196 |
| MsG0080048923.01.T02 | MTR_5g094610 | 24.000 | 250 | 179 | 6 | 122 | 361 | 214 | 462 | 2.04e-11 | 66.2 |
| MsG0080048923.01.T01 | MTR_2g061450 | 77.083 | 432 | 37 | 2 | 1 | 370 | 1 | 432 | 0.0 | 650 |
| MsG0080048923.01.T01 | MTR_2g060620 | 85.417 | 96 | 12 | 1 | 255 | 350 | 76 | 169 | 5.07e-51 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048923.01.T02 | AT1G74120 | 52.311 | 411 | 195 | 1 | 22 | 432 | 36 | 445 | 1.64e-155 | 447 |
| MsG0080048923.01.T02 | AT5G54180 | 26.971 | 241 | 167 | 6 | 137 | 373 | 253 | 488 | 3.73e-14 | 74.7 |
| MsG0080048923.01.T02 | AT1G62010 | 35.354 | 99 | 62 | 2 | 287 | 383 | 290 | 388 | 3.19e-11 | 65.5 |
| MsG0080048923.01.T02 | AT5G23930 | 21.785 | 381 | 253 | 12 | 29 | 388 | 89 | 445 | 7.62e-11 | 64.3 |
| MsG0080048923.01.T01 | AT1G74120 | 42.092 | 411 | 175 | 3 | 22 | 370 | 36 | 445 | 9.99e-110 | 328 |
| MsG0080048923.01.T01 | AT1G62085 | 26.984 | 189 | 131 | 3 | 134 | 321 | 262 | 444 | 1.77e-13 | 72.0 |
| MsG0080048923.01.T01 | AT1G62085 | 26.984 | 189 | 131 | 3 | 134 | 321 | 262 | 444 | 1.77e-13 | 72.0 |
| MsG0080048923.01.T01 | AT5G23930 | 25.000 | 204 | 143 | 3 | 127 | 326 | 248 | 445 | 2.28e-13 | 71.6 |
| MsG0080048923.01.T01 | AT1G62110 | 25.322 | 233 | 162 | 5 | 64 | 295 | 193 | 414 | 1.25e-11 | 66.2 |
| MsG0080048923.01.T01 | AT3G46950 | 25.000 | 240 | 158 | 5 | 64 | 297 | 187 | 410 | 1.26e-11 | 66.2 |
Find 98 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGCTTGGATTTGAATTT+TGG | 0.098657 | contig541end:+9582 | None:intergenic |
| AACCCCAATTTCTACATAAT+TGG | 0.109235 | contig541end:-9617 | MsG0080048923.01.T02:CDS |
| TGTTAGGGATCCAAGGATTT+TGG | 0.152438 | contig541end:-9211 | MsG0080048923.01.T02:CDS |
| ATTCCCAATTATGTAGAAAT+TGG | 0.153318 | contig541end:+9613 | None:intergenic |
| AAATTTCAAATGGGTTTAAA+TGG | 0.193455 | contig541end:+9508 | None:intergenic |
| ATTCATGAGCTGAGGGGTTT+GGG | 0.198657 | contig541end:-9264 | MsG0080048923.01.T02:CDS |
| TAGATTGTTTCCTAGGGTTT+TGG | 0.199228 | contig541end:-9319 | MsG0080048923.01.T02:CDS |
| CATGTTCATCACATCTTTAC+TGG | 0.212061 | contig541end:+8639 | None:intergenic |
| AATCTTGAACAAGTGAAATT+AGG | 0.234038 | contig541end:+9655 | None:intergenic |
| TCAAGATTGCCCTTCTGTTT+TGG | 0.238186 | contig541end:-9640 | MsG0080048923.01.T02:CDS |
| TTCTGAAAATGTTGTGATTA+GGG | 0.263086 | contig541end:-9451 | MsG0080048923.01.T02:CDS |
| GATTCATGAGCTGAGGGGTT+TGG | 0.264040 | contig541end:-9265 | MsG0080048923.01.T02:CDS |
| TTTCTGAAAATGTTGTGATT+AGG | 0.296124 | contig541end:-9452 | MsG0080048923.01.T02:CDS |
| AAATGTTGTGATTAGGGTTT+TGG | 0.299994 | contig541end:-9445 | MsG0080048923.01.T02:CDS |
| CAACACTATATTTCATCCTT+TGG | 0.303808 | contig541end:+8944 | None:intergenic |
| GAGGTTGATTGGTTATGATT+TGG | 0.308965 | contig541end:-8998 | MsG0080048923.01.T02:CDS |
| AGGTCAGGGCGGAGGTTGTT+AGG | 0.309694 | contig541end:-9227 | MsG0080048923.01.T02:CDS |
| AAATTCACACCCAAGTATTC+AGG | 0.317076 | contig541end:+8904 | None:intergenic |
| TTCCCAATTATGTAGAAATT+GGG | 0.319812 | contig541end:+9614 | None:intergenic |
| TTTCCCACTGCAGTTGTAAT+GGG | 0.336217 | contig541end:-9417 | MsG0080048923.01.T02:CDS |
| GAAGGAAAAGAGGGTTGTTA+AGG | 0.369880 | contig541end:+9695 | None:intergenic |
| GAGTTGTTAGATTGTTTCCT+AGG | 0.373935 | contig541end:-9326 | MsG0080048923.01.T02:CDS |
| AGTGCAATTGGGTTTGAAGT+TGG | 0.391269 | contig541end:-8829 | MsG0080048923.01.T02:CDS |
| ACCCCAATTTCTACATAATT+GGG | 0.391543 | contig541end:-9616 | MsG0080048923.01.T02:CDS |
| TTTCTACATAATTGGGAATC+GGG | 0.400011 | contig541end:-9609 | MsG0080048923.01.T02:CDS |
| ATTTCTACATAATTGGGAAT+CGG | 0.402635 | contig541end:-9610 | MsG0080048923.01.T02:CDS |
| ACTCTATCAATTTCATCCTT+AGG | 0.408293 | contig541end:+9345 | None:intergenic |
| TGGGATTTGGTATTGAGGAT+AGG | 0.409253 | contig541end:-9299 | MsG0080048923.01.T02:CDS |
| GAAAGCATCCCGTTGGACTT+TGG | 0.413704 | contig541end:-8693 | MsG0080048923.01.T02:CDS |
| TCACATCTTTACTGGTTTGA+GGG | 0.416518 | contig541end:+8647 | None:intergenic |
| ACAAGTTGGCGATCATCAAC+GGG | 0.417533 | contig541end:+9550 | None:intergenic |
| AATTCGTAGGGATGCTTTGA+AGG | 0.418729 | contig541end:-9037 | MsG0080048923.01.T02:CDS |
| ATTTCCCACTGCAGTTGTAA+TGG | 0.419491 | contig541end:-9418 | MsG0080048923.01.T02:CDS |
| TGGAAGGAACCGAGGTTGAT+TGG | 0.420423 | contig541end:-9009 | MsG0080048923.01.T02:CDS |
| ATCACATCTTTACTGGTTTG+AGG | 0.423102 | contig541end:+8646 | None:intergenic |
| TGTTGCAGAGTTTGAAATGC+AGG | 0.431814 | contig541end:-9152 | MsG0080048923.01.T02:CDS |
| CGGGGAAGCATTAGAAAGCT+TGG | 0.440265 | contig541end:+9569 | None:intergenic |
| GCATGAAGTTCCTGAATACT+TGG | 0.443861 | contig541end:-8914 | MsG0080048923.01.T02:CDS |
| CCCCTCAGCTCATGAATCAA+TGG | 0.448660 | contig541end:+9270 | None:intergenic |
| CAGCCGAGAGGTCAGGGCGG+AGG | 0.450679 | contig541end:-9235 | MsG0080048923.01.T02:CDS |
| ATCTCCATTCCCAAAATCCT+TGG | 0.454905 | contig541end:+9201 | None:intergenic |
| TACTCAATCACATTGTATCT+AGG | 0.456654 | contig541end:+8865 | None:intergenic |
| GCTAATCTATTCCAATCCTT+CGG | 0.461040 | contig541end:-9798 | MsG0080048923.01.T02:CDS |
| TTGTTAAGGATTGGCGAAGG+TGG | 0.462969 | contig541end:+9709 | None:intergenic |
| TGTTAAGGATTGGCGAAGGT+GGG | 0.467753 | contig541end:+9710 | None:intergenic |
| GTTGATTGGTTATGATTTGG+AGG | 0.468999 | contig541end:-8995 | MsG0080048923.01.T02:CDS |
| TTATAAAATCTAAGCCTAGT+TGG | 0.470603 | contig541end:+8787 | None:intergenic |
| CTCCGCCCTGACCTCTCGGC+TGG | 0.473380 | contig541end:+9236 | None:intergenic |
| GGTCAGGGCGGAGGTTGTTA+GGG | 0.481020 | contig541end:-9226 | MsG0080048923.01.T02:CDS |
| ATGAGATGTTTGGTGAGAAA+TGG | 0.482682 | contig541end:+9842 | None:intergenic |
| AACATCTTCCAAAGTCCAAC+GGG | 0.486105 | contig541end:+8685 | None:intergenic |
| AAAAGAGGGTTGTTAAGGAT+TGG | 0.487510 | contig541end:+9700 | None:intergenic |
| AGGAAGGAAAACCGAAGGAT+TGG | 0.491372 | contig541end:+9787 | None:intergenic |
| TGTGGAATTTGGGATTCCTA+AGG | 0.495755 | contig541end:-9361 | MsG0080048923.01.T02:CDS |
| GCAGTCACGGTTTAATTCGT+AGG | 0.498946 | contig541end:-9050 | MsG0080048923.01.T02:CDS |
| AATGTGATTGAGTATTTGAA+AGG | 0.505696 | contig541end:-8856 | MsG0080048923.01.T02:CDS |
| TTTGAGGGAACTTCGGTGGT+TGG | 0.508881 | contig541end:+8662 | None:intergenic |
| TTGGCGAAGGTGGGATGGAT+CGG | 0.509984 | contig541end:+9719 | None:intergenic |
| TCATGAACTCGTTGGTGTAG+TGG | 0.510176 | contig541end:-8609 | None:intergenic |
| AAATGAGGAAGAGAAGAGGA+AGG | 0.512676 | contig541end:+9771 | None:intergenic |
| AACAAGTTGGCGATCATCAA+CGG | 0.518122 | contig541end:+9549 | None:intergenic |
| TTCATGAGCTGAGGGGTTTG+GGG | 0.523718 | contig541end:-9263 | MsG0080048923.01.T02:CDS |
| GCCATTGATTCATGAGCTGA+GGG | 0.528936 | contig541end:-9271 | MsG0080048923.01.T02:CDS |
| GTGGATTGTTTGTGCAGTCA+CGG | 0.533435 | contig541end:-9063 | MsG0080048923.01.T02:CDS |
| CAGTCACGGTTTAATTCGTA+GGG | 0.533558 | contig541end:-9049 | MsG0080048923.01.T02:CDS |
| TTACTGGTTTGAGGGAACTT+CGG | 0.536810 | contig541end:+8655 | None:intergenic |
| AGTTGTTAGATTGTTTCCTA+GGG | 0.538107 | contig541end:-9325 | MsG0080048923.01.T02:CDS |
| CGGAGGTTGTTAGGGATCCA+AGG | 0.538817 | contig541end:-9218 | MsG0080048923.01.T02:CDS |
| AGATGTTTGGTGAGAAATGG+TGG | 0.539546 | contig541end:+9845 | None:intergenic |
| AAGGATTGGCGAAGGTGGGA+TGG | 0.547823 | contig541end:+9714 | None:intergenic |
| TCCCAATTATGTAGAAATTG+GGG | 0.555116 | contig541end:+9615 | None:intergenic |
| CAACCTCCGCCCTGACCTCT+CGG | 0.563699 | contig541end:+9232 | None:intergenic |
| ATACCAAATCCCAAAACCCT+AGG | 0.565652 | contig541end:+9309 | None:intergenic |
| CTGGTTTGAGGGAACTTCGG+TGG | 0.572836 | contig541end:+8658 | None:intergenic |
| AATTGGGGTTCCAAAACAGA+AGG | 0.574774 | contig541end:+9630 | None:intergenic |
| TGCTTTGAAGGTGTTGTGGA+AGG | 0.580553 | contig541end:-9025 | MsG0080048923.01.T02:CDS |
| TTCCCACTGCAGTTGTAATG+GGG | 0.586307 | contig541end:-9416 | MsG0080048923.01.T02:CDS |
| GAGGAAATGAGGAAGAGAAG+AGG | 0.588620 | contig541end:+9767 | None:intergenic |
| CATGAAGTTCCTGAATACTT+GGG | 0.593187 | contig541end:-8913 | MsG0080048923.01.T02:CDS |
| AGCCATTGATTCATGAGCTG+AGG | 0.597553 | contig541end:-9272 | MsG0080048923.01.T02:CDS |
| AAGACATTATCAAACCAACT+AGG | 0.602970 | contig541end:-8801 | MsG0080048923.01.T02:CDS |
| GAAGGCTTTCATGAACTCGT+TGG | 0.603394 | contig541end:-8617 | MsG0080048923.01.T02:CDS |
| GTTAAAAGAAAGCATCCCGT+TGG | 0.604141 | contig541end:-8700 | MsG0080048923.01.T02:CDS |
| TTGGTGAGAAATGGTGGAGA+AGG | 0.607502 | contig541end:+9851 | None:intergenic |
| TGTAGAACAACGCAACAAGT+TGG | 0.609072 | contig541end:+9536 | None:intergenic |
| TAAAGATGTGATGAACATGA+AGG | 0.609470 | contig541end:-8635 | MsG0080048923.01.T02:CDS |
| GGGTTGTTAAGGATTGGCGA+AGG | 0.612411 | contig541end:+9706 | None:intergenic |
| GGGATGCTTTGAAGGTGTTG+TGG | 0.613256 | contig541end:-9029 | MsG0080048923.01.T02:CDS |
| TCCCACTGCAGTTGTAATGG+GGG | 0.616815 | contig541end:-9415 | MsG0080048923.01.T02:CDS |
| AGAAGAGGAAGGAAAACCGA+AGG | 0.618756 | contig541end:+9782 | None:intergenic |
| GTTGCAGAGTTTGAAATGCA+GGG | 0.619561 | contig541end:-9151 | MsG0080048923.01.T02:CDS |
| GAACATCTTCCAAAGTCCAA+CGG | 0.624427 | contig541end:+8684 | None:intergenic |
| AAATCATAACCAATCAACCT+CGG | 0.663302 | contig541end:+9000 | None:intergenic |
| ATTGGGGTTCCAAAACAGAA+GGG | 0.683492 | contig541end:+9631 | None:intergenic |
| CCATTGATTCATGAGCTGAG+GGG | 0.690477 | contig541end:-9270 | MsG0080048923.01.T02:CDS |
| TTCCAGCCGAGAGGTCAGGG+CGG | 0.702811 | contig541end:-9238 | MsG0080048923.01.T02:CDS |
| AGGTGTTGTGGAAGGAACCG+AGG | 0.744040 | contig541end:-9017 | MsG0080048923.01.T02:CDS |
| CAAGTTGGCGATCATCAACG+GGG | 0.759642 | contig541end:+9551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTCAAATGGGTTTAAA+TGG | + | contig541end:8995-9014 | None:intergenic | 20.0% |
| !!! | AATTAAAGAGAAGATTTTTG+GGG | - | contig541end:9376-9395 | MsG0080048923.01.T02:CDS | 20.0% |
| !!! | ATTTTATGGGAAATTTCAAA+TGG | + | contig541end:9005-9024 | None:intergenic | 20.0% |
| !!! | CAATTAAAGAGAAGATTTTT+GGG | - | contig541end:9375-9394 | MsG0080048923.01.T02:CDS | 20.0% |
| !!! | CATAAAATTGAGATTTTTAG+GGG | - | contig541end:9017-9036 | MsG0080048923.01.T02:CDS | 20.0% |
| !!! | CATATATTTTTTCACATTCA+GGG | + | contig541end:9757-9776 | None:intergenic | 20.0% |
| !!! | CCATAAAATTGAGATTTTTA+GGG | - | contig541end:9016-9035 | MsG0080048923.01.T02:CDS | 20.0% |
| !!! | CCTAAAAATCTCAATTTTAT+GGG | + | contig541end:9018-9037 | None:intergenic | 20.0% |
| !!! | TTTTATGGGAAATTTCAAAT+GGG | + | contig541end:9004-9023 | None:intergenic | 20.0% |
| ! | AATCTTGAACAAGTGAAATT+AGG | + | contig541end:8848-8867 | None:intergenic | 25.0% |
| ! | AATGTGATTGAGTATTTGAA+AGG | - | contig541end:9644-9663 | MsG0080048923.01.T02:CDS | 25.0% |
| ! | ATTCCCAATTATGTAGAAAT+TGG | + | contig541end:8890-8909 | None:intergenic | 25.0% |
| ! | ATTTCTACATAATTGGGAAT+CGG | - | contig541end:8890-8909 | MsG0080048923.01.T02:CDS | 25.0% |
| ! | CCTGAATGTGAAAAAATATA+TGG | - | contig541end:9755-9774 | MsG0080048923.01.T02:CDS | 25.0% |
| ! | TTATAAAATCTAAGCCTAGT+TGG | + | contig541end:9716-9735 | None:intergenic | 25.0% |
| ! | TTCCCAATTATGTAGAAATT+GGG | + | contig541end:8889-8908 | None:intergenic | 25.0% |
| !! | AGATTGAGTTTTTAATCCAA+AGG | - | contig541end:9540-9559 | MsG0080048923.01.T02:CDS | 25.0% |
| !! | ATTGAAGAGAAAGTGATTTT+TGG | + | contig541end:8760-8779 | None:intergenic | 25.0% |
| !! | CCCATAAAATTGAGATTTTT+AGG | - | contig541end:9015-9034 | MsG0080048923.01.T02:CDS | 25.0% |
| !! | CCCTAAAAATCTCAATTTTA+TGG | + | contig541end:9019-9038 | None:intergenic | 25.0% |
| !! | GCAATTAAAGAGAAGATTTT+TGG | - | contig541end:9374-9393 | MsG0080048923.01.T02:CDS | 25.0% |
| !! | TTCTGAAAATGTTGTGATTA+GGG | - | contig541end:9049-9068 | MsG0080048923.01.T02:CDS | 25.0% |
| !! | TTGATTTTCTTGTGGAATTT+GGG | - | contig541end:9129-9148 | MsG0080048923.01.T02:CDS | 25.0% |
| !! | TTTCTGAAAATGTTGTGATT+AGG | - | contig541end:9048-9067 | MsG0080048923.01.T02:CDS | 25.0% |
| !!! | ATTGATTTTCTTGTGGAATT+TGG | - | contig541end:9128-9147 | MsG0080048923.01.T02:CDS | 25.0% |
| !!! | CCATATATTTTTTCACATTC+AGG | + | contig541end:9758-9777 | None:intergenic | 25.0% |
| AAATCATAACCAATCAACCT+CGG | + | contig541end:9503-9522 | None:intergenic | 30.0% | |
| AACCCCAATTTCTACATAAT+TGG | - | contig541end:8883-8902 | MsG0080048923.01.T02:CDS | 30.0% | |
| AAGACATTATCAAACCAACT+AGG | - | contig541end:9699-9718 | MsG0080048923.01.T02:CDS | 30.0% | |
| ACCCCAATTTCTACATAATT+GGG | - | contig541end:8884-8903 | MsG0080048923.01.T02:CDS | 30.0% | |
| ACTCTATCAATTTCATCCTT+AGG | + | contig541end:9158-9177 | None:intergenic | 30.0% | |
| AGTTGTTAGATTGTTTCCTA+GGG | - | contig541end:9175-9194 | MsG0080048923.01.T02:CDS | 30.0% | |
| CAACACTATATTTCATCCTT+TGG | + | contig541end:9559-9578 | None:intergenic | 30.0% | |
| TAAAGATGTGATGAACATGA+AGG | - | contig541end:9865-9884 | MsG0080048923.01.T02:CDS | 30.0% | |
| TACTCAATCACATTGTATCT+AGG | + | contig541end:9638-9657 | None:intergenic | 30.0% | |
| TCCCAATTATGTAGAAATTG+GGG | + | contig541end:8888-8907 | None:intergenic | 30.0% | |
| TTTCTACATAATTGGGAATC+GGG | - | contig541end:8891-8910 | MsG0080048923.01.T02:CDS | 30.0% | |
| ! | AAATGTTGTGATTAGGGTTT+TGG | - | contig541end:9055-9074 | MsG0080048923.01.T02:CDS | 30.0% |
| ! | AGTGAAATTAGGTTTTTCTG+TGG | + | contig541end:8837-8856 | None:intergenic | 30.0% |
| ! | GAAAGCTTGGATTTGAATTT+TGG | + | contig541end:8921-8940 | None:intergenic | 30.0% |
| ! | GTTTTCTGTAATGAGATGTT+TGG | + | contig541end:8671-8690 | None:intergenic | 30.0% |
| ! | GTTTTTCTGTGGAATTTTGA+AGG | + | contig541end:8826-8845 | None:intergenic | 30.0% |
| ! | TGAAAGGAAAAAGTGCAATT+GGG | - | contig541end:9660-9679 | MsG0080048923.01.T02:CDS | 30.0% |
| ! | TTGAAAGGAAAAAGTGCAAT+TGG | - | contig541end:9659-9678 | MsG0080048923.01.T02:CDS | 30.0% |
| !! | ATTGAGATTTTTAGGGGTTT+AGG | - | contig541end:9023-9042 | MsG0080048923.01.T02:CDS | 30.0% |
| !! | TGGAATTTTGAAGGAAAAGA+GGG | + | contig541end:8817-8836 | None:intergenic | 30.0% |
| !! | TTGAGATTTTTAGGGGTTTA+GGG | - | contig541end:9024-9043 | MsG0080048923.01.T02:CDS | 30.0% |
| !!! | ATTTTTTCACATTCAGGGTA+AGG | + | contig541end:9752-9771 | None:intergenic | 30.0% |
| !!! | TAGTGTCATTGATTTTCTTG+TGG | - | contig541end:9121-9140 | MsG0080048923.01.T02:CDS | 30.0% |
| AAAAGAGGGTTGTTAAGGAT+TGG | + | contig541end:8803-8822 | None:intergenic | 35.0% | |
| AAATTCACACCCAAGTATTC+AGG | + | contig541end:9599-9618 | None:intergenic | 35.0% | |
| CATGAAGTTCCTGAATACTT+GGG | - | contig541end:9587-9606 | MsG0080048923.01.T02:CDS | 35.0% | |
| CATGTTCATCACATCTTTAC+TGG | + | contig541end:9864-9883 | None:intergenic | 35.0% | |
| GAGTTGTTAGATTGTTTCCT+AGG | - | contig541end:9174-9193 | MsG0080048923.01.T02:CDS | 35.0% | |
| GCTAATCTATTCCAATCCTT+CGG | - | contig541end:8702-8721 | MsG0080048923.01.T02:CDS | 35.0% | |
| ! | AGATTGTTTCCTAGGGTTTT+GGG | - | contig541end:9182-9201 | MsG0080048923.01.T02:CDS | 35.0% |
| ! | ATATGGCAGATTTTCAACGA+AGG | - | contig541end:9772-9791 | MsG0080048923.01.T02:CDS | 35.0% |
| ! | ATGAGATGTTTGGTGAGAAA+TGG | + | contig541end:8661-8680 | None:intergenic | 35.0% |
| ! | GAGGTTGATTGGTTATGATT+TGG | - | contig541end:9502-9521 | MsG0080048923.01.T02:CDS | 35.0% |
| ! | GTTGATTGGTTATGATTTGG+AGG | - | contig541end:9505-9524 | MsG0080048923.01.T02:CDS | 35.0% |
| ! | TAGATTGTTTCCTAGGGTTT+TGG | - | contig541end:9181-9200 | MsG0080048923.01.T02:CDS | 35.0% |
| !! | AAAGAGAAGATTTTTGGGGA+GGG | - | contig541end:9380-9399 | MsG0080048923.01.T02:CDS | 35.0% |
| !! | AGAGAAAGTGATTTTTGGAG+AGG | + | contig541end:8755-8774 | None:intergenic | 35.0% |
| !! | ATCACATCTTTACTGGTTTG+AGG | + | contig541end:9857-9876 | None:intergenic | 35.0% |
| !! | GTGGAATTTTGAAGGAAAAG+AGG | + | contig541end:8818-8837 | None:intergenic | 35.0% |
| !! | TAAAGAGAAGATTTTTGGGG+AGG | - | contig541end:9379-9398 | MsG0080048923.01.T02:CDS | 35.0% |
| !! | TCACATCTTTACTGGTTTGA+GGG | + | contig541end:9856-9875 | None:intergenic | 35.0% |
| !! | TGATTTTTGGAGAGGAAATG+AGG | + | contig541end:8747-8766 | None:intergenic | 35.0% |
| AAATGAGGAAGAGAAGAGGA+AGG | + | contig541end:8732-8751 | None:intergenic | 40.0% | |
| AACATCTTCCAAAGTCCAAC+GGG | + | contig541end:9818-9837 | None:intergenic | 40.0% | |
| AATTCGTAGGGATGCTTTGA+AGG | - | contig541end:9463-9482 | MsG0080048923.01.T02:CDS | 40.0% | |
| AATTGGGGTTCCAAAACAGA+AGG | + | contig541end:8873-8892 | None:intergenic | 40.0% | |
| ATACCAAATCCCAAAACCCT+AGG | + | contig541end:9194-9213 | None:intergenic | 40.0% | |
| ATCTCCATTCCCAAAATCCT+TGG | + | contig541end:9302-9321 | None:intergenic | 40.0% | |
| ATTGGGGTTCCAAAACAGAA+GGG | + | contig541end:8872-8891 | None:intergenic | 40.0% | |
| ATTTCCCACTGCAGTTGTAA+TGG | - | contig541end:9082-9101 | MsG0080048923.01.T02:CDS | 40.0% | |
| CAGTCACGGTTTAATTCGTA+GGG | - | contig541end:9451-9470 | MsG0080048923.01.T02:CDS | 40.0% | |
| GAACATCTTCCAAAGTCCAA+CGG | + | contig541end:9819-9838 | None:intergenic | 40.0% | |
| GAAGGAAAAGAGGGTTGTTA+AGG | + | contig541end:8808-8827 | None:intergenic | 40.0% | |
| GCATGAAGTTCCTGAATACT+TGG | - | contig541end:9586-9605 | MsG0080048923.01.T02:CDS | 40.0% | |
| TGTAGAACAACGCAACAAGT+TGG | + | contig541end:8967-8986 | None:intergenic | 40.0% | |
| TTTCCCACTGCAGTTGTAAT+GGG | - | contig541end:9083-9102 | MsG0080048923.01.T02:CDS | 40.0% | |
| ! | AACAAGTTGGCGATCATCAA+CGG | + | contig541end:8954-8973 | None:intergenic | 40.0% |
| ! | AGATGTTTGGTGAGAAATGG+TGG | + | contig541end:8658-8677 | None:intergenic | 40.0% |
| ! | AGTGCAATTGGGTTTGAAGT+TGG | - | contig541end:9671-9690 | MsG0080048923.01.T02:CDS | 40.0% |
| ! | GTTAGGGATCCAAGGATTTT+GGG | - | contig541end:9290-9309 | MsG0080048923.01.T02:CDS | 40.0% |
| ! | GTTGCAGAGTTTGAAATGCA+GGG | - | contig541end:9349-9368 | MsG0080048923.01.T02:CDS | 40.0% |
| ! | TCAAGATTGCCCTTCTGTTT+TGG | - | contig541end:8860-8879 | MsG0080048923.01.T02:CDS | 40.0% |
| ! | TGGAGATTGGGGAATTTTCA+CGG | - | contig541end:9315-9334 | MsG0080048923.01.T02:CDS | 40.0% |
| ! | TGGGATTTGGTATTGAGGAT+AGG | - | contig541end:9201-9220 | MsG0080048923.01.T02:CDS | 40.0% |
| ! | TGTGGAATTTGGGATTCCTA+AGG | - | contig541end:9139-9158 | MsG0080048923.01.T02:CDS | 40.0% |
| ! | TGTTAGGGATCCAAGGATTT+TGG | - | contig541end:9289-9308 | MsG0080048923.01.T02:CDS | 40.0% |
| ! | TGTTGCAGAGTTTGAAATGC+AGG | - | contig541end:9348-9367 | MsG0080048923.01.T02:CDS | 40.0% |
| !! | AGGATTTTGGGAATGGAGAT+TGG | - | contig541end:9302-9321 | MsG0080048923.01.T02:CDS | 40.0% |
| !! | GATTTTGGGAATGGAGATTG+GGG | - | contig541end:9304-9323 | MsG0080048923.01.T02:CDS | 40.0% |
| !! | GGATTTTGGGAATGGAGATT+GGG | - | contig541end:9303-9322 | MsG0080048923.01.T02:CDS | 40.0% |
| !! | GTTAAAAGAAAGCATCCCGT+TGG | - | contig541end:9800-9819 | MsG0080048923.01.T02:CDS | 40.0% |
| !! | TGTTGTGATTAGGGTTTTGG+AGG | - | contig541end:9058-9077 | MsG0080048923.01.T02:CDS | 40.0% |
| !! | TTACTGGTTTGAGGGAACTT+CGG | + | contig541end:9848-9867 | None:intergenic | 40.0% |
| !!! | GGTTTTGGGATTTGGTATTG+AGG | - | contig541end:9196-9215 | MsG0080048923.01.T02:CDS | 40.0% |
| !!! | TTTCCTAGGGTTTTGGGATT+TGG | - | contig541end:9188-9207 | MsG0080048923.01.T02:CDS | 40.0% |
| !!! | TTTTGAAGTGAAGCTGAGAG+TGG | - | contig541end:9418-9437 | MsG0080048923.01.T02:CDS | 40.0% |
| AGAAGAGGAAGGAAAACCGA+AGG | + | contig541end:8721-8740 | None:intergenic | 45.0% | |
| AGGAAGGAAAACCGAAGGAT+TGG | + | contig541end:8716-8735 | None:intergenic | 45.0% | |
| ATTCATGAGCTGAGGGGTTT+GGG | - | contig541end:9236-9255 | MsG0080048923.01.T02:CDS | 45.0% | |
| GAAGGCTTTCATGAACTCGT+TGG | - | contig541end:9883-9902 | MsG0080048923.01.T02:CDS | 45.0% | |
| GAGGAAATGAGGAAGAGAAG+AGG | + | contig541end:8736-8755 | None:intergenic | 45.0% | |
| GCAGTCACGGTTTAATTCGT+AGG | - | contig541end:9450-9469 | MsG0080048923.01.T02:CDS | 45.0% | |
| TTCCCACTGCAGTTGTAATG+GGG | - | contig541end:9084-9103 | MsG0080048923.01.T02:CDS | 45.0% | |
| ! | ACAAGTTGGCGATCATCAAC+GGG | + | contig541end:8953-8972 | None:intergenic | 45.0% |
| ! | GTGGATTGTTTGTGCAGTCA+CGG | - | contig541end:9437-9456 | MsG0080048923.01.T02:CDS | 45.0% |
| ! | TGTTAAGGATTGGCGAAGGT+GGG | + | contig541end:8793-8812 | None:intergenic | 45.0% |
| ! | TTGGTGAGAAATGGTGGAGA+AGG | + | contig541end:8652-8671 | None:intergenic | 45.0% |
| ! | TTGTTAAGGATTGGCGAAGG+TGG | + | contig541end:8794-8813 | None:intergenic | 45.0% |
| !! | AGCCATTGATTCATGAGCTG+AGG | - | contig541end:9228-9247 | MsG0080048923.01.T02:CDS | 45.0% |
| !! | CCATTGATTCATGAGCTGAG+GGG | - | contig541end:9230-9249 | MsG0080048923.01.T02:CDS | 45.0% |
| !! | GAAGATTTTTGGGGAGGGTT+TGG | - | contig541end:9385-9404 | MsG0080048923.01.T02:CDS | 45.0% |
| !! | GCCATTGATTCATGAGCTGA+GGG | - | contig541end:9229-9248 | MsG0080048923.01.T02:CDS | 45.0% |
| !! | GGATCCAAGGATTTTGGGAA+TGG | - | contig541end:9295-9314 | MsG0080048923.01.T02:CDS | 45.0% |
| !! | TGCTTTGAAGGTGTTGTGGA+AGG | - | contig541end:9475-9494 | MsG0080048923.01.T02:CDS | 45.0% |
| !! | TTTTGGGGAGGGTTTGGTTA+GGG | - | contig541end:9391-9410 | MsG0080048923.01.T02:CDS | 45.0% |
| !! | TTTTTGGGGAGGGTTTGGTT+AGG | - | contig541end:9390-9409 | MsG0080048923.01.T02:CDS | 45.0% |
| CCCCTCAGCTCATGAATCAA+TGG | + | contig541end:9233-9252 | None:intergenic | 50.0% | |
| GATTCATGAGCTGAGGGGTT+TGG | - | contig541end:9235-9254 | MsG0080048923.01.T02:CDS | 50.0% | |
| TCCCACTGCAGTTGTAATGG+GGG | - | contig541end:9085-9104 | MsG0080048923.01.T02:CDS | 50.0% | |
| TCCCCCATTACAACTGCAGT+GGG | + | contig541end:9089-9108 | None:intergenic | 50.0% | |
| TTCATGAGCTGAGGGGTTTG+GGG | - | contig541end:9237-9256 | MsG0080048923.01.T02:CDS | 50.0% | |
| TTCCCCCATTACAACTGCAG+TGG | + | contig541end:9090-9109 | None:intergenic | 50.0% | |
| TTTGAGGGAACTTCGGTGGT+TGG | + | contig541end:9841-9860 | None:intergenic | 50.0% | |
| ! | CAAGTTGGCGATCATCAACG+GGG | + | contig541end:8952-8971 | None:intergenic | 50.0% |
| ! | GGGTTGTTAAGGATTGGCGA+AGG | + | contig541end:8797-8816 | None:intergenic | 50.0% |
| ! | TGGAAGGAACCGAGGTTGAT+TGG | - | contig541end:9491-9510 | MsG0080048923.01.T02:CDS | 50.0% |
| !! | CGGGGAAGCATTAGAAAGCT+TGG | + | contig541end:8934-8953 | None:intergenic | 50.0% |
| !! | GAAAGCATCCCGTTGGACTT+TGG | - | contig541end:9807-9826 | MsG0080048923.01.T02:CDS | 50.0% |
| !! | GGGATGCTTTGAAGGTGTTG+TGG | - | contig541end:9471-9490 | MsG0080048923.01.T02:CDS | 50.0% |
| CGGAGGTTGTTAGGGATCCA+AGG | - | contig541end:9282-9301 | MsG0080048923.01.T02:CDS | 55.0% | |
| TTGGCGAAGGTGGGATGGAT+CGG | + | contig541end:8784-8803 | None:intergenic | 55.0% | |
| ! | AAGGATTGGCGAAGGTGGGA+TGG | + | contig541end:8789-8808 | None:intergenic | 55.0% |
| ! | AGGTGTTGTGGAAGGAACCG+AGG | - | contig541end:9483-9502 | MsG0080048923.01.T02:CDS | 55.0% |
| ! | CTGGTTTGAGGGAACTTCGG+TGG | + | contig541end:9845-9864 | None:intergenic | 55.0% |
| ! | GTTTTCCAGCCGAGAGGTCA+GGG | - | contig541end:9259-9278 | MsG0080048923.01.T02:CDS | 55.0% |
| !! | TTTGGGGTTTTCCAGCCGAG+AGG | - | contig541end:9253-9272 | MsG0080048923.01.T02:CDS | 55.0% |
| AGGTCAGGGCGGAGGTTGTT+AGG | - | contig541end:9273-9292 | MsG0080048923.01.T02:CDS | 60.0% | |
| GGTCAGGGCGGAGGTTGTTA+GGG | - | contig541end:9274-9293 | MsG0080048923.01.T02:CDS | 60.0% | |
| ! | GGTTTTCCAGCCGAGAGGTC+AGG | - | contig541end:9258-9277 | MsG0080048923.01.T02:CDS | 60.0% |
| CAACCTCCGCCCTGACCTCT+CGG | + | contig541end:9271-9290 | None:intergenic | 65.0% | |
| TTCCAGCCGAGAGGTCAGGG+CGG | - | contig541end:9262-9281 | MsG0080048923.01.T02:CDS | 65.0% | |
| CAGCCGAGAGGTCAGGGCGG+AGG | - | contig541end:9265-9284 | MsG0080048923.01.T02:CDS | 75.0% | |
| CTCCGCCCTGACCTCTCGGC+TGG | + | contig541end:9267-9286 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig541end | gene | 8612 | 9910 | 8612 | ID=MsG0080048923.01;Name=MsG0080048923.01 |
| contig541end | mRNA | 8612 | 9910 | 8612 | ID=MsG0080048923.01.T01;Parent=MsG0080048923.01;Name=MsG0080048923.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|0|0|2|0|370 |
| contig541end | exon | 8612 | 8962 | 8612 | ID=MsG0080048923.01.T01:exon:37555;Parent=MsG0080048923.01.T01 |
| contig541end | exon | 9149 | 9910 | 9149 | ID=MsG0080048923.01.T01:exon:37554;Parent=MsG0080048923.01.T01 |
| contig541end | CDS | 9149 | 9910 | 9149 | ID=MsG0080048923.01.T01:cds;Parent=MsG0080048923.01.T01 |
| contig541end | CDS | 8612 | 8962 | 8612 | ID=MsG0080048923.01.T01:cds;Parent=MsG0080048923.01.T01 |
| contig541end | mRNA | 8612 | 9910 | 8612 | ID=MsG0080048923.01.T02;Parent=MsG0080048923.01;Name=MsG0080048923.01.T02;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|432 |
| contig541end | exon | 8612 | 9910 | 8612 | ID=MsG0080048923.01.T02:exon:37556;Parent=MsG0080048923.01.T02 |
| contig541end | CDS | 8612 | 9910 | 8612 | ID=MsG0080048923.01.T02:cds;Parent=MsG0080048923.01.T02 |
| Gene Sequence |
| Protein sequence |
