Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000077.01.T01 | XP_022772671.1 | 66.667 | 114 | 17 | 1 | 47 | 139 | 205 | 318 | 2.51E-38 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000077.01.T01 | P93024 | 47.097 | 155 | 20 | 3 | 47 | 139 | 214 | 368 | 9.03E-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000077.01.T01 | A0A6P6B6Z2 | 66.667 | 114 | 17 | 1 | 47 | 139 | 205 | 318 | 1.20e-38 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000076.01 | MsG0180000077.01 | 0.888305 | 6.642125e-73 | 5.118917e-69 |
| MsG0180000077.01 | MsG0180004126.01 | 0.804721 | 1.885551e-49 | 9.793850e-47 |
| MsG0180000077.01 | MsG0380016110.01 | 0.802925 | 4.450863e-49 | 2.207475e-46 |
| MsG0180000077.01 | MsG0380017997.01 | 0.802389 | 5.741493e-49 | 2.809138e-46 |
| MsG0180000077.01 | MsG0480019588.01 | 0.801460 | 8.912849e-49 | 4.258750e-46 |
| MsG0180000077.01 | MsG0580025093.01 | 0.812522 | 4.064587e-51 | 2.590144e-48 |
| MsG0180000077.01 | MsG0780038810.01 | 0.810445 | 1.148653e-50 | 6.925099e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000077.01.T01 | MTR_1g024025 | 89.655 | 58 | 6 | 0 | 47 | 104 | 202 | 259 | 8.16e-28 | 107 |
| MsG0180000077.01.T01 | MTR_1g024025 | 96.296 | 27 | 1 | 0 | 113 | 139 | 330 | 356 | 4.36e-12 | 62.8 |
| MsG0180000077.01.T01 | MTR_3g064050 | 70.690 | 58 | 17 | 0 | 47 | 104 | 186 | 243 | 4.91e-20 | 85.5 |
| MsG0180000077.01.T01 | MTR_2g018690 | 68.966 | 58 | 18 | 0 | 47 | 104 | 183 | 240 | 2.74e-19 | 83.2 |
| MsG0180000077.01.T01 | MTR_5g076270 | 68.966 | 58 | 18 | 0 | 47 | 104 | 184 | 241 | 3.09e-19 | 83.2 |
| MsG0180000077.01.T01 | MTR_8g100050 | 60.656 | 61 | 24 | 0 | 47 | 107 | 218 | 278 | 5.62e-19 | 82.4 |
| MsG0180000077.01.T01 | MTR_2g005240 | 56.923 | 65 | 28 | 0 | 47 | 111 | 181 | 245 | 9.14e-19 | 81.6 |
| MsG0180000077.01.T01 | MTR_4g124900 | 71.698 | 53 | 15 | 0 | 47 | 99 | 182 | 234 | 1.07e-18 | 81.6 |
| MsG0180000077.01.T01 | MTR_4g124900 | 71.698 | 53 | 15 | 0 | 47 | 99 | 182 | 234 | 1.09e-18 | 81.6 |
| MsG0180000077.01.T01 | MTR_8g101360 | 74.510 | 51 | 13 | 0 | 47 | 97 | 191 | 241 | 1.15e-18 | 81.6 |
| MsG0180000077.01.T01 | MTR_8g100050 | 56.923 | 65 | 28 | 0 | 47 | 111 | 218 | 282 | 1.47e-18 | 81.3 |
| MsG0180000077.01.T01 | MTR_8g079492 | 67.241 | 58 | 19 | 0 | 47 | 104 | 100 | 157 | 1.88e-18 | 80.9 |
| MsG0180000077.01.T01 | MTR_8g079492 | 67.241 | 58 | 19 | 0 | 47 | 104 | 182 | 239 | 2.08e-18 | 80.9 |
| MsG0180000077.01.T01 | MTR_8g079492 | 67.241 | 58 | 19 | 0 | 47 | 104 | 182 | 239 | 2.08e-18 | 80.9 |
| MsG0180000077.01.T01 | MTR_2g043250 | 67.925 | 53 | 17 | 0 | 47 | 99 | 182 | 234 | 1.08e-17 | 78.6 |
| MsG0180000077.01.T01 | MTR_8g027440 | 60.345 | 58 | 23 | 0 | 47 | 104 | 187 | 244 | 4.27e-17 | 77.0 |
| MsG0180000077.01.T01 | MTR_5g074840 | 58.621 | 58 | 24 | 0 | 48 | 105 | 53 | 110 | 1.82e-15 | 69.3 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 94 | 151 | 3.00e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 224 | 281 | 3.02e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 224 | 281 | 3.02e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 237 | 294 | 3.06e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 94 | 151 | 3.13e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 107 | 164 | 3.23e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 237 | 294 | 3.24e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 237 | 294 | 3.24e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 224 | 281 | 3.26e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_2g093740 | 53.448 | 58 | 27 | 0 | 47 | 104 | 107 | 164 | 3.28e-15 | 71.6 |
| MsG0180000077.01.T01 | MTR_4g060460 | 53.448 | 58 | 27 | 0 | 47 | 104 | 222 | 279 | 1.03e-14 | 70.1 |
| MsG0180000077.01.T01 | MTR_4g060460 | 53.448 | 58 | 27 | 0 | 47 | 104 | 222 | 279 | 1.04e-14 | 70.1 |
| MsG0180000077.01.T01 | MTR_7g062540 | 56.897 | 58 | 25 | 0 | 47 | 104 | 172 | 229 | 1.15e-14 | 70.1 |
| MsG0180000077.01.T01 | MTR_4g021580 | 65.306 | 49 | 17 | 0 | 47 | 95 | 177 | 225 | 1.81e-14 | 69.3 |
| MsG0180000077.01.T01 | MTR_4g021580 | 65.306 | 49 | 17 | 0 | 47 | 95 | 177 | 225 | 1.81e-14 | 69.3 |
| MsG0180000077.01.T01 | MTR_7g101280 | 61.364 | 44 | 17 | 0 | 52 | 95 | 192 | 235 | 1.81e-12 | 63.5 |
| MsG0180000077.01.T01 | MTR_0041s0110 | 61.364 | 44 | 17 | 0 | 52 | 95 | 192 | 235 | 1.81e-12 | 63.5 |
| MsG0180000077.01.T01 | MTR_2g014770 | 58.696 | 46 | 19 | 0 | 47 | 92 | 214 | 259 | 2.69e-12 | 63.2 |
| MsG0180000077.01.T01 | MTR_2g014770 | 58.696 | 46 | 19 | 0 | 47 | 92 | 214 | 259 | 2.83e-12 | 63.2 |
| MsG0180000077.01.T01 | MTR_4g088210 | 58.696 | 46 | 19 | 0 | 47 | 92 | 204 | 249 | 3.00e-12 | 63.2 |
| MsG0180000077.01.T01 | MTR_4g088210 | 58.696 | 46 | 19 | 0 | 47 | 92 | 204 | 249 | 3.01e-12 | 63.2 |
| MsG0180000077.01.T01 | MTR_7g101275 | 61.364 | 44 | 17 | 0 | 52 | 95 | 153 | 196 | 1.19e-11 | 61.2 |
| MsG0180000077.01.T01 | MTR_2g094570 | 62.791 | 43 | 16 | 0 | 52 | 94 | 169 | 211 | 1.83e-11 | 60.8 |
| MsG0180000077.01.T01 | MTR_2g094570 | 62.791 | 43 | 16 | 0 | 52 | 94 | 225 | 267 | 1.88e-11 | 60.8 |
| MsG0180000077.01.T01 | MTR_2g094570 | 62.791 | 43 | 16 | 0 | 52 | 94 | 169 | 211 | 1.89e-11 | 60.8 |
| MsG0180000077.01.T01 | MTR_4g058930 | 62.791 | 43 | 16 | 0 | 52 | 94 | 170 | 212 | 3.53e-11 | 60.1 |
| MsG0180000077.01.T01 | MTR_4g058930 | 62.791 | 43 | 16 | 0 | 52 | 94 | 170 | 212 | 3.65e-11 | 60.1 |
| MsG0180000077.01.T01 | MTR_1g064430 | 60.465 | 43 | 17 | 0 | 52 | 94 | 190 | 232 | 5.47e-11 | 59.3 |
| MsG0180000077.01.T01 | MTR_1g064430 | 60.465 | 43 | 17 | 0 | 52 | 94 | 203 | 245 | 5.53e-11 | 59.3 |
| MsG0180000077.01.T01 | MTR_1g094960 | 60.465 | 43 | 17 | 0 | 52 | 94 | 179 | 221 | 8.00e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000077.01.T01 | AT1G19850 | 47.097 | 155 | 20 | 3 | 47 | 139 | 214 | 368 | 9.21e-32 | 119 |
| MsG0180000077.01.T01 | AT1G19850 | 47.097 | 155 | 20 | 3 | 47 | 139 | 203 | 357 | 9.75e-32 | 119 |
| MsG0180000077.01.T01 | AT1G59750 | 62.295 | 61 | 23 | 0 | 47 | 107 | 180 | 240 | 5.71e-20 | 85.1 |
| MsG0180000077.01.T01 | AT1G59750 | 62.295 | 61 | 23 | 0 | 47 | 107 | 180 | 240 | 5.72e-20 | 85.1 |
| MsG0180000077.01.T01 | AT1G59750 | 62.295 | 61 | 23 | 0 | 47 | 107 | 180 | 240 | 5.72e-20 | 85.1 |
| MsG0180000077.01.T01 | AT1G59750 | 62.295 | 61 | 23 | 0 | 47 | 107 | 180 | 240 | 6.11e-20 | 85.1 |
| MsG0180000077.01.T01 | AT1G19220 | 73.585 | 53 | 14 | 0 | 47 | 99 | 182 | 234 | 1.30e-19 | 84.3 |
| MsG0180000077.01.T01 | AT1G30330 | 68.966 | 58 | 18 | 0 | 47 | 104 | 185 | 242 | 1.54e-19 | 84.0 |
| MsG0180000077.01.T01 | AT1G30330 | 68.966 | 58 | 18 | 0 | 47 | 104 | 185 | 242 | 1.54e-19 | 84.0 |
| MsG0180000077.01.T01 | AT1G30330 | 68.966 | 58 | 18 | 0 | 47 | 104 | 183 | 240 | 1.60e-19 | 84.0 |
| MsG0180000077.01.T01 | AT5G37020 | 67.241 | 58 | 19 | 0 | 47 | 104 | 182 | 239 | 4.24e-19 | 82.8 |
| MsG0180000077.01.T01 | AT5G37020 | 67.241 | 58 | 19 | 0 | 47 | 104 | 182 | 239 | 4.27e-19 | 82.8 |
| MsG0180000077.01.T01 | AT5G37020 | 67.241 | 58 | 19 | 0 | 47 | 104 | 87 | 144 | 4.54e-19 | 82.8 |
| MsG0180000077.01.T01 | AT5G62000 | 60.656 | 61 | 24 | 0 | 47 | 107 | 220 | 280 | 5.85e-19 | 82.4 |
| MsG0180000077.01.T01 | AT5G62000 | 60.656 | 61 | 24 | 0 | 47 | 107 | 220 | 280 | 5.85e-19 | 82.4 |
| MsG0180000077.01.T01 | AT5G62000 | 60.656 | 61 | 24 | 0 | 47 | 107 | 220 | 280 | 5.85e-19 | 82.4 |
| MsG0180000077.01.T01 | AT5G62000 | 60.656 | 61 | 24 | 0 | 47 | 107 | 220 | 280 | 5.85e-19 | 82.4 |
| MsG0180000077.01.T01 | AT5G62000 | 60.656 | 61 | 24 | 0 | 47 | 107 | 220 | 280 | 6.96e-19 | 82.0 |
| MsG0180000077.01.T01 | AT5G20730 | 71.698 | 53 | 15 | 0 | 47 | 99 | 183 | 235 | 2.09e-18 | 80.9 |
| MsG0180000077.01.T01 | AT5G20730 | 71.698 | 53 | 15 | 0 | 47 | 99 | 183 | 235 | 2.29e-18 | 80.9 |
| MsG0180000077.01.T01 | AT5G20730 | 71.698 | 53 | 15 | 0 | 47 | 99 | 183 | 235 | 2.29e-18 | 80.9 |
| MsG0180000077.01.T01 | AT2G33860 | 33.117 | 154 | 42 | 3 | 47 | 139 | 215 | 368 | 2.30e-18 | 80.5 |
| MsG0180000077.01.T01 | AT3G61830 | 62.069 | 58 | 22 | 0 | 47 | 104 | 133 | 190 | 3.73e-18 | 80.1 |
| MsG0180000077.01.T01 | AT3G61830 | 62.069 | 58 | 22 | 0 | 47 | 104 | 184 | 241 | 3.80e-18 | 80.1 |
| MsG0180000077.01.T01 | AT2G46530 | 62.069 | 58 | 22 | 0 | 47 | 104 | 180 | 237 | 4.35e-18 | 79.7 |
| MsG0180000077.01.T01 | AT2G46530 | 62.069 | 58 | 22 | 0 | 47 | 104 | 93 | 150 | 1.64e-17 | 78.2 |
| MsG0180000077.01.T01 | AT2G46530 | 62.069 | 58 | 22 | 0 | 47 | 104 | 201 | 258 | 1.68e-17 | 78.2 |
| MsG0180000077.01.T01 | AT5G60450 | 31.373 | 153 | 45 | 2 | 47 | 139 | 209 | 361 | 1.27e-16 | 75.9 |
| MsG0180000077.01.T01 | AT5G60450 | 31.373 | 153 | 45 | 2 | 47 | 139 | 233 | 385 | 1.36e-16 | 75.5 |
| MsG0180000077.01.T01 | AT1G34310 | 58.182 | 55 | 23 | 0 | 52 | 106 | 187 | 241 | 8.46e-16 | 73.2 |
| MsG0180000077.01.T01 | AT4G23980 | 68.000 | 50 | 16 | 0 | 47 | 96 | 172 | 221 | 2.36e-15 | 72.0 |
| MsG0180000077.01.T01 | AT4G23980 | 68.000 | 50 | 16 | 0 | 47 | 96 | 172 | 221 | 2.43e-15 | 72.0 |
| MsG0180000077.01.T01 | AT1G35520 | 49.275 | 69 | 31 | 1 | 52 | 120 | 187 | 251 | 5.42e-15 | 70.9 |
| MsG0180000077.01.T01 | AT1G35540 | 47.619 | 63 | 33 | 0 | 47 | 109 | 182 | 244 | 1.27e-14 | 70.1 |
| MsG0180000077.01.T01 | AT1G34410 | 47.826 | 69 | 32 | 1 | 52 | 120 | 187 | 251 | 1.62e-14 | 69.7 |
| MsG0180000077.01.T01 | AT1G35240 | 48.529 | 68 | 31 | 1 | 52 | 119 | 187 | 250 | 3.71e-14 | 68.6 |
| MsG0180000077.01.T01 | AT2G33860 | 53.846 | 52 | 24 | 0 | 47 | 98 | 58 | 109 | 1.25e-12 | 64.3 |
| MsG0180000077.01.T01 | AT1G34390 | 60.000 | 45 | 18 | 0 | 52 | 96 | 185 | 229 | 1.99e-12 | 63.5 |
| MsG0180000077.01.T01 | AT2G28350 | 62.791 | 43 | 16 | 0 | 52 | 94 | 176 | 218 | 1.92e-11 | 60.8 |
| MsG0180000077.01.T01 | AT2G28350 | 62.791 | 43 | 16 | 0 | 52 | 94 | 176 | 218 | 2.04e-11 | 60.8 |
| MsG0180000077.01.T01 | AT4G30080 | 62.791 | 43 | 16 | 0 | 52 | 94 | 181 | 223 | 5.82e-11 | 59.3 |
Find 27 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCATTGAAACAGGTAAAA+AGG | 0.280677 | 1:-1178038 | None:intergenic |
| TTCTAAGTGGCGAAATATTC+AGG | 0.333372 | 1:+1178682 | MsG0180000077.01.T01:CDS |
| GTTTGTTTGTCGGCTCAAAA+AGG | 0.375508 | 1:+1178194 | MsG0180000077.01.T01:CDS |
| CACAGGTTGTCAACAACAAT+CGG | 0.399626 | 1:+1178014 | MsG0180000077.01.T01:CDS |
| AACAATAATAGCATTGAAAC+AGG | 0.406401 | 1:-1178046 | None:intergenic |
| CTTAGAACCAGGCCACCTTA+AGG | 0.409021 | 1:-1178666 | None:intergenic |
| TTAGAACCAGGCCACCTTAA+GGG | 0.411042 | 1:-1178665 | None:intergenic |
| CGCAATTGCGAGTTGGTGTA+AGG | 0.454613 | 1:+1178537 | MsG0180000077.01.T01:CDS |
| GTCGATCCCTTAAGGTGGCC+TGG | 0.457511 | 1:+1178659 | MsG0180000077.01.T01:CDS |
| AAGAGACACCTTCTCACAAC+GGG | 0.474222 | 1:+1178166 | MsG0180000077.01.T01:CDS |
| AGATATATGGGTACAATTGT+TGG | 0.476234 | 1:+1178626 | MsG0180000077.01.T01:CDS |
| ACGGGTTGGAGTTTGTTTGT+CGG | 0.492443 | 1:+1178184 | MsG0180000077.01.T01:CDS |
| TGTATATCAACTACTGATGA+TGG | 0.494800 | 1:-1178587 | None:intergenic |
| TGGTAAAGATTCTGGTAGGA+AGG | 0.523481 | 1:-1177962 | None:intergenic |
| TTAGTGATGTCGATCCCTTA+AGG | 0.537210 | 1:+1178651 | MsG0180000077.01.T01:CDS |
| CGATTGTTGTTGACAACCTG+TGG | 0.556740 | 1:-1178013 | None:intergenic |
| AACTCCAACCCGTTGTGAGA+AGG | 0.573060 | 1:-1178174 | None:intergenic |
| ATATTTCGCCACTTAGAACC+AGG | 0.586883 | 1:-1178677 | None:intergenic |
| GACACCTTCTCACAACGGGT+TGG | 0.588416 | 1:+1178170 | MsG0180000077.01.T01:CDS |
| ACAGGTTGTCAACAACAATC+GGG | 0.588604 | 1:+1178015 | MsG0180000077.01.T01:CDS |
| TCTATCTAAGAATTCTGGGA+TGG | 0.590743 | 1:+1177921 | None:intergenic |
| GAGAAGTCGCAATTGCGAGT+TGG | 0.615554 | 1:+1178530 | MsG0180000077.01.T01:CDS |
| ATGATGGCAGTGTTGTCTGT+TGG | 0.631904 | 1:-1178571 | None:intergenic |
| TAAGGTGGCCTGGTTCTAAG+TGG | 0.634814 | 1:+1178669 | MsG0180000077.01.T01:CDS |
| TTCTTGGTAAAGATTCTGGT+AGG | 0.647899 | 1:-1177966 | None:intergenic |
| GAAGAGACACCTTCTCACAA+CGG | 0.684005 | 1:+1178165 | MsG0180000077.01.T01:CDS |
| GTGATGTCGATCCCTTAAGG+TGG | 0.694797 | 1:+1178654 | MsG0180000077.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGACTAATTATTTTGA+AGG | - | Chr1:1178099-1178118 | None:intergenic | 15.0% |
| ! | CTCTTATGTTATCTGAATAT+AGG | + | Chr1:1178300-1178319 | MsG0180000077.01.T01:intron | 25.0% |
| ! | TGTTATGTAGAGATGATTAT+TGG | - | Chr1:1178473-1178492 | None:intergenic | 25.0% |
| !! | AACAATAATAGCATTGAAAC+AGG | - | Chr1:1178049-1178068 | None:intergenic | 25.0% |
| !! | AATGTAATGGTTTTCGATAT+TGG | + | Chr1:1178401-1178420 | MsG0180000077.01.T01:intron | 25.0% |
| !! | ATGTAATGGTTTTCGATATT+GGG | + | Chr1:1178402-1178421 | MsG0180000077.01.T01:intron | 25.0% |
| AGATATATGGGTACAATTGT+TGG | + | Chr1:1178626-1178645 | MsG0180000077.01.T01:CDS | 30.0% | |
| TGACCTACATGAAAAATGTA+AGG | - | Chr1:1178142-1178161 | None:intergenic | 30.0% | |
| TGATGTGTCAATTGTTTCAA+GGG | + | Chr1:1178505-1178524 | MsG0180000077.01.T01:intron | 30.0% | |
| TGTATATCAACTACTGATGA+TGG | - | Chr1:1178590-1178609 | None:intergenic | 30.0% | |
| TTTCGATATTGGGAAAATTG+TGG | + | Chr1:1178412-1178431 | MsG0180000077.01.T01:intron | 30.0% | |
| ! | ACATCTTCATCATGTTTTCT+TGG | - | Chr1:1177985-1178004 | None:intergenic | 30.0% |
| ! | CTCTTTTTCTGCAGATATAT+GGG | + | Chr1:1178614-1178633 | MsG0180000077.01.T01:CDS | 30.0% |
| ! | GAAGATGTTTTATAAACCAC+AGG | + | Chr1:1177997-1178016 | MsG0180000077.01.T01:CDS | 30.0% |
| ! | GATCCTTACATTTTTCATGT+AGG | + | Chr1:1178136-1178155 | MsG0180000077.01.T01:intron | 30.0% |
| ! | TAGCATTGAAACAGGTAAAA+AGG | - | Chr1:1178041-1178060 | None:intergenic | 30.0% |
| ! | TGTTTTCTTGGTAAAGATTC+TGG | - | Chr1:1177973-1177992 | None:intergenic | 30.0% |
| !!! | AGACTTGTTTTTTTTCTCCA+TGG | + | Chr1:1178369-1178388 | MsG0180000077.01.T01:intron | 30.0% |
| ATGGTGACATTGCAATGTAA+TGG | + | Chr1:1178388-1178407 | MsG0180000077.01.T01:intron | 35.0% | |
| ATTACATTGCAATGTCACCA+TGG | - | Chr1:1178389-1178408 | None:intergenic | 35.0% | |
| CCATATATCTGCAGAAAAAG+AGG | - | Chr1:1178616-1178635 | None:intergenic | 35.0% | |
| GTGATGTGTCAATTGTTTCA+AGG | + | Chr1:1178504-1178523 | MsG0180000077.01.T01:intron | 35.0% | |
| TGTAAGGATCTAACTCAATC+AGG | - | Chr1:1178126-1178145 | None:intergenic | 35.0% | |
| TTCTAAGTGGCGAAATATTC+AGG | + | Chr1:1178682-1178701 | MsG0180000077.01.T01:CDS | 35.0% | |
| TTCTTGGTAAAGATTCTGGT+AGG | - | Chr1:1177969-1177988 | None:intergenic | 35.0% | |
| ! | CCTCTTTTTCTGCAGATATA+TGG | + | Chr1:1178613-1178632 | MsG0180000077.01.T01:CDS | 35.0% |
| ! | GCGATTCTGTTCTTTTTATC+AGG | + | Chr1:1178227-1178246 | MsG0180000077.01.T01:CDS | 35.0% |
| ACAGGTTGTCAACAACAATC+GGG | + | Chr1:1178015-1178034 | MsG0180000077.01.T01:CDS | 40.0% | |
| ATATTTCGCCACTTAGAACC+AGG | - | Chr1:1178680-1178699 | None:intergenic | 40.0% | |
| CACAGGTTGTCAACAACAAT+CGG | + | Chr1:1178014-1178033 | MsG0180000077.01.T01:CDS | 40.0% | |
| TGGTAAAGATTCTGGTAGGA+AGG | - | Chr1:1177965-1177984 | None:intergenic | 40.0% | |
| TTAGTGATGTCGATCCCTTA+AGG | + | Chr1:1178651-1178670 | MsG0180000077.01.T01:CDS | 40.0% | |
| !! | GTTTGTTTGTCGGCTCAAAA+AGG | + | Chr1:1178194-1178213 | MsG0180000077.01.T01:CDS | 40.0% |
| AAGAGACACCTTCTCACAAC+GGG | + | Chr1:1178166-1178185 | MsG0180000077.01.T01:CDS | 45.0% | |
| ATGATGGCAGTGTTGTCTGT+TGG | - | Chr1:1178574-1178593 | None:intergenic | 45.0% | |
| GAAGAGACACCTTCTCACAA+CGG | + | Chr1:1178165-1178184 | MsG0180000077.01.T01:CDS | 45.0% | |
| GGCTCAAAAAGGCTTAAAGC+AGG | + | Chr1:1178205-1178224 | MsG0180000077.01.T01:CDS | 45.0% | |
| TTAGAACCAGGCCACCTTAA+GGG | - | Chr1:1178668-1178687 | None:intergenic | 45.0% | |
| ! | CGATTGTTGTTGACAACCTG+TGG | - | Chr1:1178016-1178035 | None:intergenic | 45.0% |
| !! | ACGGGTTGGAGTTTGTTTGT+CGG | + | Chr1:1178184-1178203 | MsG0180000077.01.T01:CDS | 45.0% |
| AACTCCAACCCGTTGTGAGA+AGG | - | Chr1:1178177-1178196 | None:intergenic | 50.0% | |
| CTTAGAACCAGGCCACCTTA+AGG | - | Chr1:1178669-1178688 | None:intergenic | 50.0% | |
| GAGAAGTCGCAATTGCGAGT+TGG | + | Chr1:1178530-1178549 | MsG0180000077.01.T01:CDS | 50.0% | |
| GTGATGTCGATCCCTTAAGG+TGG | + | Chr1:1178654-1178673 | MsG0180000077.01.T01:CDS | 50.0% | |
| !! | CGCAATTGCGAGTTGGTGTA+AGG | + | Chr1:1178537-1178556 | MsG0180000077.01.T01:CDS | 50.0% |
| !! | TAAGGTGGCCTGGTTCTAAG+TGG | + | Chr1:1178669-1178688 | MsG0180000077.01.T01:CDS | 50.0% |
| GACACCTTCTCACAACGGGT+TGG | + | Chr1:1178170-1178189 | MsG0180000077.01.T01:CDS | 55.0% | |
| GTCGATCCCTTAAGGTGGCC+TGG | + | Chr1:1178659-1178678 | MsG0180000077.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 1177935 | 1178712 | 1177935 | ID=MsG0180000077.01;Name=MsG0180000077.01 |
| Chr1 | mRNA | 1177935 | 1178712 | 1177935 | ID=MsG0180000077.01.T01;Parent=MsG0180000077.01;Name=MsG0180000077.01.T01;_AED=0.58;_eAED=0.58;_QI=0|0|0|1|0|0.33|3|0|140 |
| Chr1 | exon | 1177935 | 1178079 | 1177935 | ID=MsG0180000077.01.T01:exon:7426;Parent=MsG0180000077.01.T01 |
| Chr1 | exon | 1178158 | 1178248 | 1178158 | ID=MsG0180000077.01.T01:exon:7425;Parent=MsG0180000077.01.T01 |
| Chr1 | exon | 1178526 | 1178712 | 1178526 | ID=MsG0180000077.01.T01:exon:7424;Parent=MsG0180000077.01.T01 |
| Chr1 | CDS | 1177935 | 1178079 | 1177935 | ID=MsG0180000077.01.T01:cds;Parent=MsG0180000077.01.T01 |
| Chr1 | CDS | 1178158 | 1178248 | 1178158 | ID=MsG0180000077.01.T01:cds;Parent=MsG0180000077.01.T01 |
| Chr1 | CDS | 1178526 | 1178712 | 1178526 | ID=MsG0180000077.01.T01:cds;Parent=MsG0180000077.01.T01 |
| Gene Sequence |
| Protein sequence |
