AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000260.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000260.01.T01 MTR_1g019540 82.911 474 30 4 28 452 57 528 0.0 753
MsG0180000260.01.T01 MTR_1g019540 83.051 472 29 4 30 452 6 475 0.0 750
MsG0180000260.01.T01 MTR_1g019530 74.895 474 63 5 28 452 58 524 0.0 677
MsG0180000260.01.T01 MTR_1g029130 42.647 408 188 8 80 447 116 517 2.71e-107 332
MsG0180000260.01.T01 MTR_3g095910 44.499 409 178 13 80 447 128 528 1.40e-105 328
MsG0180000260.01.T01 MTR_7g113610 41.363 411 168 9 99 447 91 490 1.51e-99 310
MsG0180000260.01.T01 MTR_1g082880 41.071 448 179 12 76 453 57 489 1.78e-94 296
MsG0180000260.01.T01 MTR_1g080460 39.535 86 52 0 301 386 101 186 1.44e-15 79.7
MsG0180000260.01.T01 MTR_7g115460 37.209 86 54 0 301 386 110 195 3.31e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000260.01.T01 AT4G33330 60.271 443 124 6 60 452 88 528 0.0 543
MsG0180000260.01.T01 AT4G33330 60.271 443 124 6 60 452 99 539 0.0 542
MsG0180000260.01.T01 AT4G33330 60.271 443 124 6 60 452 20 460 0.0 542
MsG0180000260.01.T01 AT4G33330 60.271 443 124 6 60 452 88 528 0.0 542
MsG0180000260.01.T01 AT4G33330 57.682 371 105 6 60 380 99 467 2.89e-144 421
MsG0180000260.01.T01 AT3G18660 44.181 421 182 11 72 446 126 539 1.92e-108 336
MsG0180000260.01.T01 AT3G18660 44.181 421 182 11 72 446 127 540 2.08e-108 336
MsG0180000260.01.T01 AT3G18660 44.181 421 182 11 72 446 131 544 3.90e-108 335
MsG0180000260.01.T01 AT1G77130 42.721 419 192 12 70 447 98 509 5.20e-105 326
MsG0180000260.01.T01 AT1G54940 39.909 441 183 11 76 453 70 491 1.31e-96 302
MsG0180000260.01.T01 AT1G08990 37.443 438 200 12 76 452 75 499 9.87e-83 266
MsG0180000260.01.T01 AT5G18480 32.680 153 84 4 301 435 106 257 8.45e-16 80.5

Find 111 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAATAGTTTACTCTTCT+TGG 0.139993 1:-3492351 None:intergenic
TGCAAATATGGTTGTGAAAA+AGG 0.150008 1:+3490501 MsG0180000260.01.T01:CDS
GCCTGTTGGGTCTTGTAATT+TGG 0.153558 1:+3490678 MsG0180000260.01.T01:CDS
ATCATCATCTGCAGAAAATT+TGG 0.207024 1:-3487402 None:intergenic
ATCTTAGTTCCATTCTTCTT+TGG 0.208608 1:-3490142 None:intergenic
GATACTTTGTCGAAATTAAT+TGG 0.214953 1:-3490277 None:intergenic
TCATCTTATAGTTGCAAATA+TGG 0.220474 1:+3490489 MsG0180000260.01.T01:CDS
CTGCTCTCGGGTTTCGGATT+CGG 0.238233 1:-3491902 None:intergenic
ATCGGTAAAGGAATGAAAAT+TGG 0.246763 1:+3490193 MsG0180000260.01.T01:CDS
GTAATTTGGCTTTGCCTCTA+TGG 0.251696 1:+3490692 MsG0180000260.01.T01:CDS
TACAAGATATATGGAGATTA+AGG 0.296060 1:-3492811 None:intergenic
AAATTCTGGCATTGGTAATT+CGG 0.310582 1:-3490374 None:intergenic
TTCTTCTTCGTCGATCCATT+CGG 0.312431 1:-3490329 None:intergenic
AACGTAGGACTGAGTTGAAT+TGG 0.320185 1:+3492618 MsG0180000260.01.T01:three_prime_UTR
GTCACTGATCCTAGAAAATC+TGG 0.327874 1:+3492695 MsG0180000260.01.T01:three_prime_UTR
TCTTCTTCGTCGATCCATTC+GGG 0.329696 1:-3490328 None:intergenic
CGAAACCCGAGAGCAGAAAA+TGG 0.329727 1:+3491909 MsG0180000260.01.T01:CDS
AGTTTACGACATGTCCAAAA+TGG 0.354426 1:+3491668 MsG0180000260.01.T01:CDS
CACCGATACAAGAGCCTTGA+TGG 0.355752 1:+3487445 MsG0180000260.01.T01:CDS
CTGCCAATGCACGGCGTTTG+CGG 0.359937 1:-3491852 None:intergenic
CATGATGCCAGAGTTGAAAA+TGG 0.363410 1:-3492084 None:intergenic
AGAAAATTTCTTTGCCTGTT+GGG 0.364645 1:+3490665 MsG0180000260.01.T01:CDS
TGAAGTTGATGTAAAGAAGT+TGG 0.369288 1:+3490639 MsG0180000260.01.T01:CDS
TAGTGAATGGCATATAGTTT+TGG 0.373528 1:-3492438 None:intergenic
TGGGATCACTTGATTATCAT+TGG 0.383578 1:+3492663 MsG0180000260.01.T01:three_prime_UTR
CGCAAACGCCGTGCATTGGC+AGG 0.384275 1:+3491853 MsG0180000260.01.T01:CDS
TACGGAAGGTACAAGATATA+TGG 0.384648 1:-3492820 None:intergenic
GGAAGAGTAAGGTTGTGTTT+TGG 0.395531 1:+3490542 MsG0180000260.01.T01:CDS
AAACTACCTGAAGGTACAAT+TGG 0.395841 1:-3492120 None:intergenic
AATTCTGGCATTGGTAATTC+GGG 0.401126 1:-3490373 None:intergenic
TAATTTGGCTTTGCCTCTAT+GGG 0.402490 1:+3490693 MsG0180000260.01.T01:CDS
CCATGCAAGTATCCATTAGA+AGG 0.406398 1:+3490436 MsG0180000260.01.T01:CDS
ATAGAGACTATGACTGCAAT+TGG 0.413410 1:+3492487 MsG0180000260.01.T01:CDS
CAGAAAATTTCTTTGCCTGT+TGG 0.425692 1:+3490664 MsG0180000260.01.T01:CDS
AGCCTTCCAATTGTACCTTC+AGG 0.428889 1:+3492114 MsG0180000260.01.T01:CDS
AGGGGAAGAATGATTGGAAA+TGG 0.435577 1:+3490521 MsG0180000260.01.T01:CDS
ACTACCTTGGTTTGAAACCT+TGG 0.436528 1:+3492457 MsG0180000260.01.T01:CDS
CGCCGTGCATTGGCAGGTGC+CGG 0.453053 1:+3491859 MsG0180000260.01.T01:CDS
TATGTTGCAAATTCTGGCAT+TGG 0.454598 1:-3490382 None:intergenic
TCATACAATGGAGGTGATCA+AGG 0.461190 1:+3492291 MsG0180000260.01.T01:CDS
CTGCAGATGATGATGACATC+AGG 0.461918 1:+3487411 MsG0180000260.01.T01:CDS
AAGGAGAAGATCTTATAAGA+TGG 0.462241 1:+3492643 MsG0180000260.01.T01:three_prime_UTR
ACTTGCTTCTACTGTTGTGT+TGG 0.466267 1:-3492385 None:intergenic
CTATATGCCATTCACTACCT+TGG 0.473091 1:+3492444 MsG0180000260.01.T01:CDS
AGTATAATTATAGTAAGTTC+CGG 0.474553 1:+3491943 MsG0180000260.01.T01:CDS
AATCAGTAAGTTGCCACAAC+CGG 0.480734 1:-3491962 None:intergenic
CGTCCGCAAACGCCGTGCAT+TGG 0.485600 1:+3491849 MsG0180000260.01.T01:CDS
TTCCCAGTGGCAGACATTTG+AGG 0.486184 1:-3492053 None:intergenic
TCGGGTTTCGGATTCGGTGA+TGG 0.486817 1:-3491896 None:intergenic
TTTCCTCAAATGTCTGCCAC+TGG 0.488899 1:+3492050 MsG0180000260.01.T01:CDS
TCAAGGAATCCAAAGAAGAA+TGG 0.492637 1:+3490133 MsG0180000260.01.T01:CDS
CAAGTATCCATTAGAAGGGT+GGG 0.493728 1:+3490441 MsG0180000260.01.T01:CDS
GCCAAATTACAAGACCCAAC+AGG 0.501987 1:-3490679 None:intergenic
ATTATAGTAAGTTCCGGTTG+TGG 0.510136 1:+3491949 MsG0180000260.01.T01:CDS
CTCCATCAAGGCTCTTGTAT+CGG 0.512255 1:-3487447 None:intergenic
TTGGGATGTGGTGGATCAAA+GGG 0.513208 1:+3492506 MsG0180000260.01.T01:CDS
ACGTAGGACTGAGTTGAATT+GGG 0.513319 1:+3492619 MsG0180000260.01.T01:three_prime_UTR
GTGCATTGGCAGGTGCCGGT+TGG 0.516239 1:+3491863 MsG0180000260.01.T01:CDS
GCCTTGATGGAGTTCAAAGC+TGG 0.517462 1:+3487458 MsG0180000260.01.T01:CDS
TAGAGACTATGACTGCAATT+GGG 0.518966 1:+3492488 MsG0180000260.01.T01:CDS
GAGTAAATGTAGACCAATGT+TGG 0.519399 1:+3490564 MsG0180000260.01.T01:CDS
GATGGTTCGAATCTGCCAAC+CGG 0.524900 1:-3491878 None:intergenic
AATTACCAAAAGCAAAATCA+AGG 0.531008 1:+3490116 MsG0180000260.01.T01:CDS
AACCGGCACCTGCCAATGCA+CGG 0.534207 1:-3491861 None:intergenic
TCCAGCTTTGAACTCCATCA+AGG 0.536851 1:-3487459 None:intergenic
AGGAGAAGATCTTATAAGAT+GGG 0.537025 1:+3492644 MsG0180000260.01.T01:three_prime_UTR
ATGATACAATGTCGTGGCGC+CGG 0.546091 1:-3492272 None:intergenic
TACATACCTTGTTCCCATAG+AGG 0.546595 1:-3490706 None:intergenic
GGACAGATTTATTTCCCGAA+TGG 0.547391 1:+3490314 MsG0180000260.01.T01:CDS
TTTCAAACCAAGGTAGTGAA+TGG 0.549113 1:-3492451 None:intergenic
CAATGCACGGCGTTTGCGGA+CGG 0.551035 1:-3491848 None:intergenic
GAAAATTGGAACGGTGAACA+TGG 0.554949 1:+3490207 MsG0180000260.01.T01:CDS
ACGTGGCGCACCAACGTTGG+TGG 0.556176 1:+3492540 MsG0180000260.01.T01:CDS
TTCCTCAAATGTCTGCCACT+GGG 0.556230 1:+3492051 MsG0180000260.01.T01:CDS
ACGGCGTTTGCGGACGGAGA+TGG 0.562657 1:-3491842 None:intergenic
CCTTCTAATGGATACTTGCA+TGG 0.564429 1:-3490436 None:intergenic
ATTGGGATGTGGTGGATCAA+AGG 0.566589 1:+3492505 MsG0180000260.01.T01:CDS
ATGAATATGTCTATACCATA+CGG 0.568597 1:-3492838 None:intergenic
GCTTTGCCTCTATGGGAACA+AGG 0.576091 1:+3490700 MsG0180000260.01.T01:CDS
AATGTAGTGTGCTTATGAGC+CGG 0.577527 1:+3492253 MsG0180000260.01.T01:intron
CTATGACTGCAATTGGGATG+TGG 0.583176 1:+3492494 MsG0180000260.01.T01:CDS
ATTGGTAATTCGGGACATGT+TGG 0.586011 1:-3490364 None:intergenic
TACCTGAAGGTACAATTGGA+AGG 0.593491 1:-3492116 None:intergenic
GCAAGTATCCATTAGAAGGG+TGG 0.596603 1:+3490440 MsG0180000260.01.T01:CDS
AAGACGATGATGTAAGCGAA+TGG 0.598071 1:+3490233 MsG0180000260.01.T01:CDS
TATATCTTGTACCTTCCGTA+TGG 0.598510 1:+3492823 MsG0180000260.01.T01:three_prime_UTR
AAGTATCCATTAGAAGGGTG+GGG 0.601975 1:+3490442 MsG0180000260.01.T01:CDS
AGTATCCATTAGAAGGGTGG+GGG 0.605531 1:+3490443 MsG0180000260.01.T01:CDS
CATGCAAGTATCCATTAGAA+GGG 0.613293 1:+3490437 MsG0180000260.01.T01:CDS
GGACTGAGTTGAATTGGGAA+AGG 0.613486 1:+3492624 MsG0180000260.01.T01:three_prime_UTR
TGATTGGAAATGGAAGAGTA+AGG 0.613848 1:+3490531 MsG0180000260.01.T01:CDS
ATTTGCAACATATGAAAACA+TGG 0.614599 1:+3490393 MsG0180000260.01.T01:CDS
GTGACGTGGCGCACCAACGT+TGG 0.615676 1:+3492537 MsG0180000260.01.T01:CDS
GTAAGCGAATGGAACATACA+TGG 0.622116 1:+3490244 MsG0180000260.01.T01:CDS
TAAATGAGATATTTGTGTGG+TGG 0.628179 1:+3492319 MsG0180000260.01.T01:CDS
TAAAGGAATGAAAATTGGAA+CGG 0.629065 1:+3490198 MsG0180000260.01.T01:CDS
ATTCTGATATTCTTGTGCTG+AGG 0.637140 1:+3492006 MsG0180000260.01.T01:CDS
TTCTAAATGAGATATTTGTG+TGG 0.639460 1:+3492316 MsG0180000260.01.T01:CDS
AATGCCAAGGTTTCAAACCA+AGG 0.646436 1:-3492461 None:intergenic
CATACAATGGAGGTGATCAA+GGG 0.650143 1:+3492292 MsG0180000260.01.T01:CDS
TAGTCTCTATAGCAATGCCA+AGG 0.650829 1:-3492474 None:intergenic
TGACTGCAATTGGGATGTGG+TGG 0.653637 1:+3492497 MsG0180000260.01.T01:CDS
CATGAAAATTCCACCAACGT+TGG 0.657745 1:-3492550 None:intergenic
CACGACATTGTATCATACAA+TGG 0.658397 1:+3492279 MsG0180000260.01.T01:CDS
CATTGTATGATACAATGTCG+TGG 0.678013 1:-3492278 None:intergenic
GTAGGTTGACAAGACAACGT+AGG 0.684481 1:+3492603 MsG0180000260.01.T01:exon
GACATTGTATCATACAATGG+AGG 0.686734 1:+3492282 MsG0180000260.01.T01:CDS
CATCTGCAGAAAATTTGGAG+AGG 0.692643 1:-3487397 None:intergenic
ATATGTCTATACCATACGGA+AGG 0.695693 1:-3492834 None:intergenic
AAAGGGTTATGCTAGTGACG+TGG 0.729457 1:+3492523 MsG0180000260.01.T01:CDS
AATGGACTGATCATTCCCAG+TGG 0.776213 1:-3492066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAAAATTACATAA+AGG - Chr1:3492767-3492786 None:intergenic 10.0%
!! AACAATTACTATTATATAAT+GGG + Chr1:3490944-3490963 MsG0180000260.01.T01:intron 10.0%
!! TAACAATTACTATTATATAA+TGG + Chr1:3490943-3490962 MsG0180000260.01.T01:intron 10.0%
!! TTTACAAAATATATATAAGA+AGG + Chr1:3492197-3492216 MsG0180000260.01.T01:intron 10.0%
!!! AAACTATTTAAAGAATTTTT+GGG + Chr1:3492362-3492381 MsG0180000260.01.T01:CDS 10.0%
!!! AATAACATTAATTTTTCTTT+AGG - Chr1:3487843-3487862 None:intergenic 10.0%
!!! TAAACTATTTAAAGAATTTT+TGG + Chr1:3492361-3492380 MsG0180000260.01.T01:CDS 10.0%
!! AAAAAATAGTAACAGTAAAA+AGG + Chr1:3490819-3490838 MsG0180000260.01.T01:intron 15.0%
!! TAAATTTAAACATCATGAAT+TGG + Chr1:3488866-3488885 MsG0180000260.01.T01:intron 15.0%
!! TTACATAAAGGAAAAAAAAA+AGG - Chr1:3492755-3492774 None:intergenic 15.0%
!!! AATTAATCTTTTCTTTATTG+TGG + Chr1:3491014-3491033 MsG0180000260.01.T01:intron 15.0%
!!! ACTAATAGCATTTTTTTAAA+AGG + Chr1:3491084-3491103 MsG0180000260.01.T01:intron 15.0%
!!! ATTGCATATTTTATTTTGTA+TGG - Chr1:3488750-3488769 None:intergenic 15.0%
!!! ATTTTCATCTTAATCATTTT+GGG - Chr1:3489087-3489106 None:intergenic 15.0%
!!! ATTTTTCATTTAGAAATTGT+AGG + Chr1:3489431-3489450 MsG0180000260.01.T01:intron 15.0%
!!! TTATATAAGCAATTTTTGTT+AGG - Chr1:3488132-3488151 None:intergenic 15.0%
!!! TTGCATATTTTATTTTGTAT+GGG - Chr1:3488749-3488768 None:intergenic 15.0%
!! AAAAGATTTATTTCCATGTT+TGG - Chr1:3490033-3490052 None:intergenic 20.0%
!! AAATATGCAATGAAATCATT+TGG + Chr1:3488759-3488778 MsG0180000260.01.T01:intron 20.0%
!! AATTGCTTTACTTATATTTC+AGG - Chr1:3489471-3489490 None:intergenic 20.0%
!! AGAAAAGATTAATTAAGAAC+TGG - Chr1:3491008-3491027 None:intergenic 20.0%
!! AGTATAATTATAGTAAGTTC+CGG + Chr1:3491943-3491962 MsG0180000260.01.T01:CDS 20.0%
!! ATAATATTGCACTTTCAAAA+TGG + Chr1:3489721-3489740 MsG0180000260.01.T01:intron 20.0%
!! GTAGTACAAAATATATGTAT+AGG - Chr1:3488810-3488829 None:intergenic 20.0%
!! TATATATTCAAAGGACAATT+TGG - Chr1:3489227-3489246 None:intergenic 20.0%
!! TATCTTAGAAGATAAAATGT+CGG - Chr1:3489261-3489280 None:intergenic 20.0%
!! TCAAATACTAAAATGTACTA+GGG + Chr1:3488291-3488310 MsG0180000260.01.T01:intron 20.0%
!! TTAAAACTTCTTTCTGATTT+AGG + Chr1:3488176-3488195 MsG0180000260.01.T01:intron 20.0%
!! TTCTTAGAAAACAAGAATTT+GGG - Chr1:3491269-3491288 None:intergenic 20.0%
!! TTGAACACATATATATTCAA+AGG - Chr1:3489236-3489255 None:intergenic 20.0%
!! TTTAAATAGTTTACTCTTCT+TGG - Chr1:3492354-3492373 None:intergenic 20.0%
!! TTTATTATGCTATATTACGT+CGG - Chr1:3487590-3487609 None:intergenic 20.0%
!! TTTCTTAGAAAACAAGAATT+TGG - Chr1:3491270-3491289 None:intergenic 20.0%
!!! ACTAGCTTTATTAACAATAT+TGG - Chr1:3488272-3488291 None:intergenic 20.0%
!!! ATTTAATCATAAACTCCTTT+TGG - Chr1:3488851-3488870 None:intergenic 20.0%
!!! CAAAGTTTATATTTTATGCA+GGG + Chr1:3489400-3489419 MsG0180000260.01.T01:intron 20.0%
!!! CATTTTCATCTTAATCATTT+TGG - Chr1:3489088-3489107 None:intergenic 20.0%
!!! TAGGAAATCATTTAAAACAA+TGG - Chr1:3487824-3487843 None:intergenic 20.0%
!!! TTTTGAAAGTGCAATATTAT+AGG - Chr1:3489721-3489740 None:intergenic 20.0%
! AAAAATCAAAGCAGTATTAG+AGG + Chr1:3490093-3490112 MsG0180000260.01.T01:CDS 25.0%
! AACAAGTCAATATATAGTGT+TGG - Chr1:3491161-3491180 None:intergenic 25.0%
! AATTACCAAAAGCAAAATCA+AGG + Chr1:3490116-3490135 MsG0180000260.01.T01:CDS 25.0%
! ACATCCTAATTTATGAAAGA+GGG + Chr1:3489643-3489662 MsG0180000260.01.T01:intron 25.0%
! ATCTATATGTGACAAAGATA+GGG - Chr1:3487932-3487951 None:intergenic 25.0%
! ATGAATATGTCTATACCATA+CGG - Chr1:3492841-3492860 None:intergenic 25.0%
! ATTTAAACATCATGAATTGG+TGG + Chr1:3488869-3488888 MsG0180000260.01.T01:intron 25.0%
! ATTTGCAACATATGAAAACA+TGG + Chr1:3490393-3490412 MsG0180000260.01.T01:CDS 25.0%
! CAAATACTAAAATGTACTAG+GGG + Chr1:3488292-3488311 MsG0180000260.01.T01:intron 25.0%
! CCTGCATAAAATATAAACTT+TGG - Chr1:3489402-3489421 None:intergenic 25.0%
! CTTTGATATGATACATTGTA+AGG - Chr1:3488468-3488487 None:intergenic 25.0%
! GATACTTTGTCGAAATTAAT+TGG - Chr1:3490280-3490299 None:intergenic 25.0%
! GATAGTTTACCATATTCAAA+TGG + Chr1:3488718-3488737 MsG0180000260.01.T01:intron 25.0%
! GTAAATTAAAAACTACCTGA+AGG - Chr1:3492132-3492151 None:intergenic 25.0%
! GTATTATGATTATCTTACCA+TGG + Chr1:3488198-3488217 MsG0180000260.01.T01:intron 25.0%
! GTCAAATACTAAAATGTACT+AGG + Chr1:3488290-3488309 MsG0180000260.01.T01:intron 25.0%
! TAAAACAGCAACTGAAATTA+TGG - Chr1:3489041-3489060 None:intergenic 25.0%
! TAAAGGAATGAAAATTGGAA+CGG + Chr1:3490198-3490217 MsG0180000260.01.T01:CDS 25.0%
! TACAAGATATATGGAGATTA+AGG - Chr1:3492814-3492833 None:intergenic 25.0%
! TAGTAGTTAAATATGAGGAT+TGG - Chr1:3489621-3489640 None:intergenic 25.0%
! TATCTATATGTGACAAAGAT+AGG - Chr1:3487933-3487952 None:intergenic 25.0%
! TCATCTTATAGTTGCAAATA+TGG + Chr1:3490489-3490508 MsG0180000260.01.T01:CDS 25.0%
! TGTGTTAGTAGTTAAATATG+AGG - Chr1:3489626-3489645 None:intergenic 25.0%
! TGTTTCAAATCTTCATAAGT+TGG + Chr1:3489745-3489764 MsG0180000260.01.T01:intron 25.0%
! TTCTAAATGAGATATTTGTG+TGG + Chr1:3492316-3492335 MsG0180000260.01.T01:CDS 25.0%
!! AGAAGTTACAAAGTTTTTGT+AGG + Chr1:3492585-3492604 MsG0180000260.01.T01:CDS 25.0%
!! CCAAAGTTTATATTTTATGC+AGG + Chr1:3489399-3489418 MsG0180000260.01.T01:intron 25.0%
!! TAATCTTTTCTTTATTGTGG+AGG + Chr1:3491017-3491036 MsG0180000260.01.T01:intron 25.0%
!! TTTTCATATGTTGCAAATTC+TGG - Chr1:3490391-3490410 None:intergenic 25.0%
!!! AAAAATAGTGTTGATTTTGC+AGG + Chr1:3491636-3491655 MsG0180000260.01.T01:intron 25.0%
!!! AAAATAGTGTTGATTTTGCA+GGG + Chr1:3491637-3491656 MsG0180000260.01.T01:intron 25.0%
!!! AAGTATCACAATTTTTCAAC+TGG + Chr1:3490293-3490312 MsG0180000260.01.T01:CDS 25.0%
!!! AATGTTTTTTTTGATGCCTA+TGG + Chr1:3487955-3487974 MsG0180000260.01.T01:intron 25.0%
!!! ATTTTAATGTGTACCAAACA+TGG + Chr1:3490017-3490036 MsG0180000260.01.T01:intron 25.0%
!!! GATGATTTGGTTAAAAATGA+AGG + Chr1:3490601-3490620 MsG0180000260.01.T01:CDS 25.0%
!!! GATTTTTAGATGTGATGATT+TGG + Chr1:3490588-3490607 MsG0180000260.01.T01:CDS 25.0%
!!! TCAATATATAGTGTTGGTTA+GGG - Chr1:3491155-3491174 None:intergenic 25.0%
AAGGAGAAGATCTTATAAGA+TGG + Chr1:3492643-3492662 MsG0180000260.01.T01:three_prime_UTR 30.0%
AATACATTCATGGCACAAAA+AGG - Chr1:3488439-3488458 None:intergenic 30.0%
AGAAAATTTCTTTGCCTGTT+GGG + Chr1:3490665-3490684 MsG0180000260.01.T01:CDS 30.0%
AGAAATAACAGTGCCTAAAA+TGG - Chr1:3489698-3489717 None:intergenic 30.0%
AGAAGAAGATGAGAAAGAAA+GGG - Chr1:3489966-3489985 None:intergenic 30.0%
AGATTAATTAAGAACTGGTC+TGG - Chr1:3491003-3491022 None:intergenic 30.0%
AGGAGAAGATCTTATAAGAT+GGG + Chr1:3492644-3492663 MsG0180000260.01.T01:three_prime_UTR 30.0%
ATCATCATCTGCAGAAAATT+TGG - Chr1:3487405-3487424 None:intergenic 30.0%
ATCGGTAAAGGAATGAAAAT+TGG + Chr1:3490193-3490212 MsG0180000260.01.T01:CDS 30.0%
ATCTTAGTTCCATTCTTCTT+TGG - Chr1:3490145-3490164 None:intergenic 30.0%
ATGCATGCAAAATAATGTAG+TGG - Chr1:3491130-3491149 None:intergenic 30.0%
CAAATATGGTTGTGAAAAAG+GGG + Chr1:3490503-3490522 MsG0180000260.01.T01:CDS 30.0%
CAATATTGTCTAAGGACAAA+TGG + Chr1:3489509-3489528 MsG0180000260.01.T01:intron 30.0%
CACATCCTAATTTATGAAAG+AGG + Chr1:3489642-3489661 MsG0180000260.01.T01:intron 30.0%
CATCTAAAAATCTCCAACAT+TGG - Chr1:3490580-3490599 None:intergenic 30.0%
CATTTGTCCTTAGACAATAT+TGG - Chr1:3489511-3489530 None:intergenic 30.0%
CCATAAAGAAAGGAAACAAA+AGG - Chr1:3488384-3488403 None:intergenic 30.0%
GAATCCCTCTTTCATAAATT+AGG - Chr1:3489650-3489669 None:intergenic 30.0%
GAATCTCATAATCAAAGCTT+TGG - Chr1:3489786-3489805 None:intergenic 30.0%
GACAAATGGAGCTATATAAA+TGG + Chr1:3489523-3489542 MsG0180000260.01.T01:intron 30.0%
GCAAATATGGTTGTGAAAAA+GGG + Chr1:3490502-3490521 MsG0180000260.01.T01:CDS 30.0%
TAAATGAGATATTTGTGTGG+TGG + Chr1:3492319-3492338 MsG0180000260.01.T01:CDS 30.0%
TACGTGTAAATAAAGATGAG+AGG - Chr1:3488922-3488941 None:intergenic 30.0%
TAGTATCAATACAGTGAAGA+CGG - Chr1:3491510-3491529 None:intergenic 30.0%
TATTGGAGATTGGAACAAAA+TGG - Chr1:3489494-3489513 None:intergenic 30.0%
TCAGTGAAAGGAATTTAAGT+TGG + Chr1:3487699-3487718 MsG0180000260.01.T01:intron 30.0%
TCCTTTCTATTTGTGAAGAT+GGG + Chr1:3488338-3488357 MsG0180000260.01.T01:intron 30.0%
TGAAATAGATGATAGTCCTA+AGG - Chr1:3488225-3488244 None:intergenic 30.0%
TGCAAATATGGTTGTGAAAA+AGG + Chr1:3490501-3490520 MsG0180000260.01.T01:CDS 30.0%
TGCATAAACAATCAGAAAGA+TGG - Chr1:3489825-3489844 None:intergenic 30.0%
TGGTTAAAAATGAAGGTGAT+TGG + Chr1:3490608-3490627 MsG0180000260.01.T01:CDS 30.0%
TTAAAAATGAAGGTGATTGG+TGG + Chr1:3490611-3490630 MsG0180000260.01.T01:CDS 30.0%
TTAACTTTGAATCCTAGGTA+GGG - Chr1:3487796-3487815 None:intergenic 30.0%
TTAATACTAGTCCAATATCC+TGG + Chr1:3491239-3491258 MsG0180000260.01.T01:intron 30.0%
TTACTTATATTACCCTTACC+AGG + Chr1:3487731-3487750 MsG0180000260.01.T01:intron 30.0%
TTAGCTTAACTTTGAATCCT+AGG - Chr1:3487801-3487820 None:intergenic 30.0%
TTCCTTTCTATTTGTGAAGA+TGG + Chr1:3488337-3488356 MsG0180000260.01.T01:intron 30.0%
TTCCTTTCTTTATGGTTGAA+GGG + Chr1:3488389-3488408 MsG0180000260.01.T01:intron 30.0%
TTTCCTTTCTTTATGGTTGA+AGG + Chr1:3488388-3488407 MsG0180000260.01.T01:intron 30.0%
! AAAAGAGATCCAGATTTTCT+AGG - Chr1:3492707-3492726 None:intergenic 30.0%
! AAAATCTGGATCTCTTTTGA+TGG + Chr1:3492709-3492728 MsG0180000260.01.T01:three_prime_UTR 30.0%
! AGTTTTCTAGGCGAAAAAAT+CGG + Chr1:3490175-3490194 MsG0180000260.01.T01:CDS 30.0%
! CAACTAATTGTTGTTGTTGT+TGG + Chr1:3488956-3488975 MsG0180000260.01.T01:intron 30.0%
! CACACAATTTTGCATTAAAG+TGG + Chr1:3490735-3490754 MsG0180000260.01.T01:intron 30.0%
! CAGTGAAAGGAATTTAAGTT+GGG + Chr1:3487700-3487719 MsG0180000260.01.T01:intron 30.0%
! GTGGAATTTTCATGATAGAA+TGG + Chr1:3492559-3492578 MsG0180000260.01.T01:CDS 30.0%
! TAGTGAATGGCATATAGTTT+TGG - Chr1:3492441-3492460 None:intergenic 30.0%
! TCTCATCTTTATTTACACGT+AGG + Chr1:3488921-3488940 MsG0180000260.01.T01:intron 30.0%
!! AAATTCTGGCATTGGTAATT+CGG - Chr1:3490377-3490396 None:intergenic 30.0%
!! CCTTTTGTTTCCTTTCTTTA+TGG + Chr1:3488381-3488400 MsG0180000260.01.T01:intron 30.0%
!! GTCAATATATAGTGTTGGTT+AGG - Chr1:3491156-3491175 None:intergenic 30.0%
!! TCTTACGTTTTGTTCCATTT+TGG - Chr1:3491685-3491704 None:intergenic 30.0%
!! TGAAGTTGATGTAAAGAAGT+TGG + Chr1:3490639-3490658 MsG0180000260.01.T01:CDS 30.0%
!!! ATAGAAGTACCAAGTTTTCT+AGG + Chr1:3490163-3490182 MsG0180000260.01.T01:CDS 30.0%
!!! ATTTTTTCGCCTAGAAAACT+TGG - Chr1:3490175-3490194 None:intergenic 30.0%
!!! CTTGTTTTGTCAGCATTATT+TGG + Chr1:3491194-3491213 MsG0180000260.01.T01:intron 30.0%
!!! TTCACTTTTAAGCATTGACT+AGG - Chr1:3488495-3488514 None:intergenic 30.0%
AAGGTGAGTCAATACATTCA+TGG - Chr1:3488449-3488468 None:intergenic 35.0%
AATAACAGTGCCTAAAATGG+AGG - Chr1:3489695-3489714 None:intergenic 35.0%
ACTTTGATACTGCGTGAAAT+TGG + Chr1:3488626-3488645 MsG0180000260.01.T01:intron 35.0%
AGTATCAATACAGTGAAGAC+GGG - Chr1:3491509-3491528 None:intergenic 35.0%
AGTTTACGACATGTCCAAAA+TGG + Chr1:3491668-3491687 MsG0180000260.01.T01:CDS 35.0%
ATAACAGTGCCTAAAATGGA+GGG - Chr1:3489694-3489713 None:intergenic 35.0%
ATAGAGACTATGACTGCAAT+TGG + Chr1:3492487-3492506 MsG0180000260.01.T01:CDS 35.0%
ATATGTCTATACCATACGGA+AGG - Chr1:3492837-3492856 None:intergenic 35.0%
ATCCCTTCAACCATAAAGAA+AGG - Chr1:3488394-3488413 None:intergenic 35.0%
ATTATAGTAAGTTCCGGTTG+TGG + Chr1:3491949-3491968 MsG0180000260.01.T01:CDS 35.0%
ATTATCTTACCATGGACCTT+AGG + Chr1:3488206-3488225 MsG0180000260.01.T01:intron 35.0%
ATTCTGATATTCTTGTGCTG+AGG + Chr1:3492006-3492025 MsG0180000260.01.T01:CDS 35.0%
CAAAAAACGTGACAACCAAA+AGG + Chr1:3488833-3488852 MsG0180000260.01.T01:intron 35.0%
CACGACATTGTATCATACAA+TGG + Chr1:3492279-3492298 MsG0180000260.01.T01:CDS 35.0%
CAGAAAATTTCTTTGCCTGT+TGG + Chr1:3490664-3490683 MsG0180000260.01.T01:CDS 35.0%
CAGAAGAAGATGAGAAAGAA+AGG - Chr1:3489967-3489986 None:intergenic 35.0%
CATGCAAGTATCCATTAGAA+GGG + Chr1:3490437-3490456 MsG0180000260.01.T01:CDS 35.0%
CATTGTATGATACAATGTCG+TGG - Chr1:3492281-3492300 None:intergenic 35.0%
CCAATCTCCAATATTGTCTA+AGG + Chr1:3489501-3489520 MsG0180000260.01.T01:intron 35.0%
CCTTAGACAATATTGGAGAT+TGG - Chr1:3489504-3489523 None:intergenic 35.0%
CTTAACTTTGAATCCTAGGT+AGG - Chr1:3487797-3487816 None:intergenic 35.0%
GACATTGTATCATACAATGG+AGG + Chr1:3492282-3492301 MsG0180000260.01.T01:CDS 35.0%
GAGTAAATGTAGACCAATGT+TGG + Chr1:3490564-3490583 MsG0180000260.01.T01:CDS 35.0%
GCTTTCTTTCAATAACCAGT+TGG + Chr1:3487620-3487639 MsG0180000260.01.T01:intron 35.0%
GTAGAAGCAAGTGTGAAAAA+TGG + Chr1:3492396-3492415 MsG0180000260.01.T01:CDS 35.0%
GTTGTCACGTTTAAGTCAAA+TGG + Chr1:3487863-3487882 MsG0180000260.01.T01:intron 35.0%
TAGAGACTATGACTGCAATT+GGG + Chr1:3492488-3492507 MsG0180000260.01.T01:CDS 35.0%
TATATCTTGTACCTTCCGTA+TGG + Chr1:3492823-3492842 MsG0180000260.01.T01:three_prime_UTR 35.0%
TATGTTGCAAATTCTGGCAT+TGG - Chr1:3490385-3490404 None:intergenic 35.0%
TCAAGGAATCCAAAGAAGAA+TGG + Chr1:3490133-3490152 MsG0180000260.01.T01:CDS 35.0%
TCCCATCTTCACAAATAGAA+AGG - Chr1:3488342-3488361 None:intergenic 35.0%
TGAAAAAGGGGAAGAATGAT+TGG + Chr1:3490515-3490534 MsG0180000260.01.T01:CDS 35.0%
TGATTGGAAATGGAAGAGTA+AGG + Chr1:3490531-3490550 MsG0180000260.01.T01:CDS 35.0%
TGGGATCACTTGATTATCAT+TGG + Chr1:3492663-3492682 MsG0180000260.01.T01:three_prime_UTR 35.0%
TGGGTACAACCATTTGAATA+TGG - Chr1:3488730-3488749 None:intergenic 35.0%
TGTGTGATCTTCAACTTGTA+GGG + Chr1:3490058-3490077 MsG0180000260.01.T01:intron 35.0%
TTAAATTGCATCCCACATTC+AGG - Chr1:3487993-3488012 None:intergenic 35.0%
TTACACGTAGGAAATTGACA+GGG + Chr1:3488933-3488952 MsG0180000260.01.T01:intron 35.0%
TTGTGTGATCTTCAACTTGT+AGG + Chr1:3490057-3490076 MsG0180000260.01.T01:intron 35.0%
TTTACACGTAGGAAATTGAC+AGG + Chr1:3488932-3488951 MsG0180000260.01.T01:intron 35.0%
TTTCAAACCAAGGTAGTGAA+TGG - Chr1:3492454-3492473 None:intergenic 35.0%
! AAACTACCTGAAGGTACAAT+TGG - Chr1:3492123-3492142 None:intergenic 35.0%
! AACTTACACTTTTCCTGGTA+AGG - Chr1:3487747-3487766 None:intergenic 35.0%
! AAGTTAGTCTAGTCGTGAAA+GGG + Chr1:3488674-3488693 MsG0180000260.01.T01:intron 35.0%
! ACTTACACTTTTCCTGGTAA+GGG - Chr1:3487746-3487765 None:intergenic 35.0%
! AGCTGTCAATGAGAAGTATA+AGG - Chr1:3491822-3491841 None:intergenic 35.0%
! CTTTGAACTTACACTTTTCC+TGG - Chr1:3487752-3487771 None:intergenic 35.0%
! CTTTTCTTTATTGTGGAGGA+CGG + Chr1:3491021-3491040 MsG0180000260.01.T01:intron 35.0%
! GCAACTGAAATTATGGATTG+TGG - Chr1:3489034-3489053 None:intergenic 35.0%
! GGATTCCTTGATTTTGCTTT+TGG - Chr1:3490124-3490143 None:intergenic 35.0%
! GTGAAATTGGTCTCATGTAT+TGG + Chr1:3488639-3488658 MsG0180000260.01.T01:intron 35.0%
! TACGGAAGGTACAAGATATA+TGG - Chr1:3492823-3492842 None:intergenic 35.0%
! TATGTTCCATTTTCTGCTCT+CGG - Chr1:3491918-3491937 None:intergenic 35.0%
! TCACGCAGTATCAAAGTTTT+TGG - Chr1:3488623-3488642 None:intergenic 35.0%
!! AACACAACAACTTTGAGACA+AGG - Chr1:3487903-3487922 None:intergenic 35.0%
!! AATTCTGGCATTGGTAATTC+GGG - Chr1:3490376-3490395 None:intergenic 35.0%
!! ACACAACAACTTTGAGACAA+GGG - Chr1:3487902-3487921 None:intergenic 35.0%
!! ACCTTTAAAGTTCCTGAATG+TGG + Chr1:3487978-3487997 MsG0180000260.01.T01:intron 35.0%
!! CCTTTAAAGTTCCTGAATGT+GGG + Chr1:3487979-3487998 MsG0180000260.01.T01:intron 35.0%
!! CTCATAATCAAAGCTTTGGA+TGG - Chr1:3489782-3489801 None:intergenic 35.0%
!! TAATTTGGCTTTGCCTCTAT+GGG + Chr1:3490693-3490712 MsG0180000260.01.T01:CDS 35.0%
!!! CTTAATCATTTTGGGACCAT+AGG - Chr1:3489079-3489098 None:intergenic 35.0%
!!! GAATGGCATATAGTTTTGGA+GGG - Chr1:3492437-3492456 None:intergenic 35.0%
!!! TGAATGGCATATAGTTTTGG+AGG - Chr1:3492438-3492457 None:intergenic 35.0%
!!! TTGGTTGTCACGTTTTTTGT+TGG - Chr1:3488832-3488851 None:intergenic 35.0%
AACAAGAATTTGGGTAGACC+AGG - Chr1:3491260-3491279 None:intergenic 40.0%
AAGACGATGATGTAAGCGAA+TGG + Chr1:3490233-3490252 MsG0180000260.01.T01:CDS 40.0%
AAGTATCCATTAGAAGGGTG+GGG + Chr1:3490442-3490461 MsG0180000260.01.T01:CDS 40.0%
AATAGACCGAAGAAGAAGGA+CGG - Chr1:3489859-3489878 None:intergenic 40.0%
AATCAGTAAGTTGCCACAAC+CGG - Chr1:3491965-3491984 None:intergenic 40.0%
AATGCCAAGGTTTCAAACCA+AGG - Chr1:3492464-3492483 None:intergenic 40.0%
AATGTAGTGTGCTTATGAGC+CGG + Chr1:3492253-3492272 MsG0180000260.01.T01:intron 40.0%
AATTGTGTTGAGAGCAGTTG+AGG - Chr1:3488989-3489008 None:intergenic 40.0%
ACATTCATGGCACAAAAAGG+TGG - Chr1:3488436-3488455 None:intergenic 40.0%
ACTTGCTTCTACTGTTGTGT+TGG - Chr1:3492388-3492407 None:intergenic 40.0%
AGCAACTTTGATTGTGACGT+AGG - Chr1:3491300-3491319 None:intergenic 40.0%
AGGGGAAGAATGATTGGAAA+TGG + Chr1:3490521-3490540 MsG0180000260.01.T01:CDS 40.0%
ATTGAGAGAATGCCATCACA+AGG + Chr1:3489910-3489929 MsG0180000260.01.T01:intron 40.0%
ATTTGGGTAGACCAGGATAT+TGG - Chr1:3491253-3491272 None:intergenic 40.0%
CAAGTATCCATTAGAAGGGT+GGG + Chr1:3490441-3490460 MsG0180000260.01.T01:CDS 40.0%
CATACAATGGAGGTGATCAA+GGG + Chr1:3492292-3492311 MsG0180000260.01.T01:CDS 40.0%
CATCTGCAGAAAATTTGGAG+AGG - Chr1:3487400-3487419 None:intergenic 40.0%
CATGAAAATTCCACCAACGT+TGG - Chr1:3492553-3492572 None:intergenic 40.0%
CATGATGCCAGAGTTGAAAA+TGG - Chr1:3492087-3492106 None:intergenic 40.0%
CCATGCAAGTATCCATTAGA+AGG + Chr1:3490436-3490455 MsG0180000260.01.T01:CDS 40.0%
CCCACATTCAGGAACTTTAA+AGG - Chr1:3487982-3488001 None:intergenic 40.0%
CTAGGCGAAAAAATCGGTAA+AGG + Chr1:3490181-3490200 MsG0180000260.01.T01:CDS 40.0%
CTATATGCCATTCACTACCT+TGG + Chr1:3492444-3492463 MsG0180000260.01.T01:CDS 40.0%
CTTTACAAACAGTCCCATGA+TGG + Chr1:3487652-3487671 MsG0180000260.01.T01:intron 40.0%
CTTTCACGACTAGACTAACT+TGG - Chr1:3488675-3488694 None:intergenic 40.0%
CTTTCACTGATCACCATCAT+GGG - Chr1:3487668-3487687 None:intergenic 40.0%
GAAAATTGGAACGGTGAACA+TGG + Chr1:3490207-3490226 MsG0180000260.01.T01:CDS 40.0%
GCAACTTTGATTGTGACGTA+GGG - Chr1:3491299-3491318 None:intergenic 40.0%
GGACAGATTTATTTCCCGAA+TGG + Chr1:3490314-3490333 MsG0180000260.01.T01:CDS 40.0%
GGACTGTTTGTAAAGTGGTT+TGG - Chr1:3487647-3487666 None:intergenic 40.0%
GTAAGCGAATGGAACATACA+TGG + Chr1:3490244-3490263 MsG0180000260.01.T01:CDS 40.0%
GTCACTGATCCTAGAAAATC+TGG + Chr1:3492695-3492714 MsG0180000260.01.T01:three_prime_UTR 40.0%
TAACAGTGCCTAAAATGGAG+GGG - Chr1:3489693-3489712 None:intergenic 40.0%
TAATGCATGTTTCCCTACCT+AGG + Chr1:3487781-3487800 MsG0180000260.01.T01:intron 40.0%
TACATACCTTGTTCCCATAG+AGG - Chr1:3490709-3490728 None:intergenic 40.0%
TAGTCTCTATAGCAATGCCA+AGG - Chr1:3492477-3492496 None:intergenic 40.0%
TCATACAATGGAGGTGATCA+AGG + Chr1:3492291-3492310 MsG0180000260.01.T01:CDS 40.0%
TCATGGGACTGTTTGTAAAG+TGG - Chr1:3487652-3487671 None:intergenic 40.0%
TCGAAATAGACCGAAGAAGA+AGG - Chr1:3489863-3489882 None:intergenic 40.0%
TCTTCAGAAAGCTACGTTTG+TGG + Chr1:3491749-3491768 MsG0180000260.01.T01:intron 40.0%
TGCACAAAGCCTCTTAAAAC+AGG + Chr1:3491784-3491803 MsG0180000260.01.T01:intron 40.0%
TGGCTTAAGTAGCAAGGATT+AGG - Chr1:3489601-3489620 None:intergenic 40.0%
TGTAGAGAGCTAAGTGAAGT+TGG - Chr1:3488086-3488105 None:intergenic 40.0%
TTCTTCTTCGTCGATCCATT+CGG - Chr1:3490332-3490351 None:intergenic 40.0%
TTGCTGCAAGCTGATGAATT+AGG + Chr1:3487523-3487542 MsG0180000260.01.T01:intron 40.0%
TTTCCTAAGCAGAAAGTCGT+AGG - Chr1:3490873-3490892 None:intergenic 40.0%
! AACGTAGGACTGAGTTGAAT+TGG + Chr1:3492618-3492637 MsG0180000260.01.T01:three_prime_UTR 40.0%
! ACGTAGGACTGAGTTGAATT+GGG + Chr1:3492619-3492638 MsG0180000260.01.T01:three_prime_UTR 40.0%
! ACTACCTTGGTTTGAAACCT+TGG + Chr1:3492457-3492476 MsG0180000260.01.T01:CDS 40.0%
! AGAGCTAAGTGAAGTTGGTT+AGG - Chr1:3488081-3488100 None:intergenic 40.0%
! AGCTAAGTGAAGTTGGTTAG+GGG - Chr1:3488079-3488098 None:intergenic 40.0%
! ATGTTCCATTTTCTGCTCTC+GGG - Chr1:3491917-3491936 None:intergenic 40.0%
! ATTGGTAATTCGGGACATGT+TGG - Chr1:3490367-3490386 None:intergenic 40.0%
! CAAGTTAGTCTAGTCGTGAA+AGG + Chr1:3488673-3488692 MsG0180000260.01.T01:intron 40.0%
! CAGGAACTTTAAAGGTCCAT+AGG - Chr1:3487974-3487993 None:intergenic 40.0%
! CATTTTCAACTCTGGCATCA+TGG + Chr1:3492085-3492104 MsG0180000260.01.T01:CDS 40.0%
! CCTTCTAATGGATACTTGCA+TGG - Chr1:3490439-3490458 None:intergenic 40.0%
! GAGAAGTATAAGGTCACGTT+TGG - Chr1:3491812-3491831 None:intergenic 40.0%
! GAGCTAAGTGAAGTTGGTTA+GGG - Chr1:3488080-3488099 None:intergenic 40.0%
! GATCAGTCCATTTTCAACTC+TGG + Chr1:3492077-3492096 MsG0180000260.01.T01:CDS 40.0%
! GGAAGAGTAAGGTTGTGTTT+TGG + Chr1:3490542-3490561 MsG0180000260.01.T01:CDS 40.0%
! TACCTGAAGGTACAATTGGA+AGG - Chr1:3492119-3492138 None:intergenic 40.0%
!! CGTTTGGTTCCTGTTTTAAG+AGG - Chr1:3491796-3491815 None:intergenic 40.0%
!! GGGGAACAAGCATTTGTTTT+TGG + Chr1:3488052-3488071 MsG0180000260.01.T01:intron 40.0%
!! GTAATTTGGCTTTGCCTCTA+TGG + Chr1:3490692-3490711 MsG0180000260.01.T01:CDS 40.0%
AAAGGGTTATGCTAGTGACG+TGG + Chr1:3492523-3492542 MsG0180000260.01.T01:CDS 45.0%
AAGAAGAAGGACGGAGAAGA+AGG - Chr1:3489850-3489869 None:intergenic 45.0%
ACAGGAATGGTCAAGGCATA+AGG + Chr1:3488030-3488049 MsG0180000260.01.T01:intron 45.0%
ACTACTCTATCCCTCTCCTA+TGG + Chr1:3489060-3489079 MsG0180000260.01.T01:intron 45.0%
AGAAGAAGGACGGAGAAGAA+GGG - Chr1:3489849-3489868 None:intergenic 45.0%
AGAGATCACAGGAATGGTCA+AGG + Chr1:3488023-3488042 MsG0180000260.01.T01:intron 45.0%
AGAGTGTAGGACTGTTGCAT+AGG - Chr1:3491732-3491751 None:intergenic 45.0%
AGATGTGTGTGAGAGATCAC+AGG + Chr1:3488012-3488031 MsG0180000260.01.T01:intron 45.0%
AGCCTTCCAATTGTACCTTC+AGG + Chr1:3492114-3492133 MsG0180000260.01.T01:CDS 45.0%
AGGAATGGTCAAGGCATAAG+GGG + Chr1:3488032-3488051 MsG0180000260.01.T01:intron 45.0%
AGTATCCATTAGAAGGGTGG+GGG + Chr1:3490443-3490462 MsG0180000260.01.T01:CDS 45.0%
CACGACTAGACTAACTTGGT+GGG - Chr1:3488671-3488690 None:intergenic 45.0%
CAGGAATGGTCAAGGCATAA+GGG + Chr1:3488031-3488050 MsG0180000260.01.T01:intron 45.0%
CCTTTCACTGATCACCATCA+TGG - Chr1:3487669-3487688 None:intergenic 45.0%
CTATGACTGCAATTGGGATG+TGG + Chr1:3492494-3492513 MsG0180000260.01.T01:CDS 45.0%
CTCCATCAAGGCTCTTGTAT+CGG - Chr1:3487450-3487469 None:intergenic 45.0%
GAACCTACGACTTTCTGCTT+AGG + Chr1:3490867-3490886 MsG0180000260.01.T01:intron 45.0%
GAGAATGCCATCACAAGGTA+AGG + Chr1:3489915-3489934 MsG0180000260.01.T01:intron 45.0%
GATGATAGTCCTAAGGTCCA+TGG - Chr1:3488218-3488237 None:intergenic 45.0%
GCAAGTATCCATTAGAAGGG+TGG + Chr1:3490440-3490459 MsG0180000260.01.T01:CDS 45.0%
GCCAAATTACAAGACCCAAC+AGG - Chr1:3490682-3490701 None:intergenic 45.0%
GGATGCCATGCCATTAGAAT+CGG - Chr1:3489945-3489964 None:intergenic 45.0%
GGTGATCAGTGAAAGGTTCA+TGG + Chr1:3487673-3487692 MsG0180000260.01.T01:intron 45.0%
GGTTCATGGTGATCAGTGAA+AGG + Chr1:3487687-3487706 MsG0180000260.01.T01:intron 45.0%
GTCGTGAAAGGGATTACATG+AGG + Chr1:3488685-3488704 MsG0180000260.01.T01:intron 45.0%
TACGTCGGAAGCTGATCATA+TGG - Chr1:3487575-3487594 None:intergenic 45.0%
TCACGACTAGACTAACTTGG+TGG - Chr1:3488672-3488691 None:intergenic 45.0%
TCTTCTCCGTCCTTCTTCTT+CGG + Chr1:3489850-3489869 MsG0180000260.01.T01:intron 45.0%
TCTTCTTCGTCGATCCATTC+GGG - Chr1:3490331-3490350 None:intergenic 45.0%
TGGAGTTCAAAGCTGGAGTA+AGG + Chr1:3487465-3487484 MsG0180000260.01.T01:intron 45.0%
TGGTGGAGCTTCAAAGTTCA+TGG + Chr1:3488886-3488905 MsG0180000260.01.T01:intron 45.0%
TGTGTGAGAGATCACAGGAA+TGG + Chr1:3488017-3488036 MsG0180000260.01.T01:intron 45.0%
TTCCTCAAATGTCTGCCACT+GGG + Chr1:3492051-3492070 MsG0180000260.01.T01:CDS 45.0%
TTTCCTCAAATGTCTGCCAC+TGG + Chr1:3492050-3492069 MsG0180000260.01.T01:CDS 45.0%
! ACGACTAGACTAACTTGGTG+GGG - Chr1:3488670-3488689 None:intergenic 45.0%
! AGTGTAGTCCCCTCCATTTT+AGG + Chr1:3489682-3489701 MsG0180000260.01.T01:intron 45.0%
! CATTTTCTGCTCTCGGGTTT+CGG - Chr1:3491911-3491930 None:intergenic 45.0%
! CCATGATGGTGATCAGTGAA+AGG + Chr1:3487666-3487685 MsG0180000260.01.T01:intron 45.0%
! CGTAGCTTTCTGAAGAGTGT+AGG - Chr1:3491745-3491764 None:intergenic 45.0%
! CTGCAGATGATGATGACATC+AGG + Chr1:3487411-3487430 MsG0180000260.01.T01:CDS 45.0%
! GCCTGTTGGGTCTTGTAATT+TGG + Chr1:3490678-3490697 MsG0180000260.01.T01:CDS 45.0%
! GCTAAGTGAAGTTGGTTAGG+GGG - Chr1:3488078-3488097 None:intergenic 45.0%
! GGACTGAGTTGAATTGGGAA+AGG + Chr1:3492624-3492643 MsG0180000260.01.T01:three_prime_UTR 45.0%
! GTAAGGTGAGCCGATTCTAA+TGG + Chr1:3489932-3489951 MsG0180000260.01.T01:intron 45.0%
! GTAGGTTGACAAGACAACGT+AGG + Chr1:3492603-3492622 MsG0180000260.01.T01:exon 45.0%
!! AATGGACTGATCATTCCCAG+TGG - Chr1:3492069-3492088 None:intergenic 45.0%
!! ATTGGGATGTGGTGGATCAA+AGG + Chr1:3492505-3492524 MsG0180000260.01.T01:CDS 45.0%
!! GAGGATTGGCTTAAGTAGCA+AGG - Chr1:3489607-3489626 None:intergenic 45.0%
!! GTAAAGTGGTTTGGTCCAAC+TGG - Chr1:3487638-3487657 None:intergenic 45.0%
!! TCCAGCTTTGAACTCCATCA+AGG - Chr1:3487462-3487481 None:intergenic 45.0%
!! TTGGGATGTGGTGGATCAAA+GGG + Chr1:3492506-3492525 MsG0180000260.01.T01:CDS 45.0%
!!! CATTTTGGGACCATAGGAGA+GGG - Chr1:3489073-3489092 None:intergenic 45.0%
!!! TCATTTTGGGACCATAGGAG+AGG - Chr1:3489074-3489093 None:intergenic 45.0%
!! ATATATATATATATAAACTT+TGG - Chr1:3489370-3489389 None:intergenic 5.0%
ATGATACAATGTCGTGGCGC+CGG - Chr1:3492275-3492294 None:intergenic 50.0%
CACCGATACAAGAGCCTTGA+TGG + Chr1:3487445-3487464 MsG0180000260.01.T01:CDS 50.0%
CGAAACCCGAGAGCAGAAAA+TGG + Chr1:3491909-3491928 MsG0180000260.01.T01:CDS 50.0%
GATGGTTCGAATCTGCCAAC+CGG - Chr1:3491881-3491900 None:intergenic 50.0%
GCCTTGATGGAGTTCAAAGC+TGG + Chr1:3487458-3487477 MsG0180000260.01.T01:CDS 50.0%
GCTTTGCCTCTATGGGAACA+AGG + Chr1:3490700-3490719 MsG0180000260.01.T01:CDS 50.0%
GGAATGGTCAAGGCATAAGG+GGG + Chr1:3488033-3488052 MsG0180000260.01.T01:intron 50.0%
TGACTGCAATTGGGATGTGG+TGG + Chr1:3492497-3492516 MsG0180000260.01.T01:CDS 50.0%
TGTGTTGAGAGCAGTTGAGG+AGG - Chr1:3488986-3489005 None:intergenic 50.0%
TTCCCAGTGGCAGACATTTG+AGG - Chr1:3492056-3492075 None:intergenic 50.0%
! GGTGGGGGAGAGAAGTTTTA+AGG + Chr1:3490458-3490477 MsG0180000260.01.T01:CDS 50.0%
! GTGAGCCGATTCTAATGGCA+TGG + Chr1:3489937-3489956 MsG0180000260.01.T01:intron 50.0%
! TAGACTAACTTGGTGGGGTC+AGG - Chr1:3488665-3488684 None:intergenic 50.0%
CGCTCTATCCACTGAGCTAC+AGG + Chr1:3490897-3490916 MsG0180000260.01.T01:intron 55.0%
CGGCTCACCTTACCTTGTGA+TGG - Chr1:3489925-3489944 None:intergenic 55.0%
CTGCTCTCGGGTTTCGGATT+CGG - Chr1:3491905-3491924 None:intergenic 55.0%
TCTCTCCCCCACCCTTCTAA+TGG - Chr1:3490451-3490470 None:intergenic 55.0%
!! AAAAGGCACTGAAACGCGCC+AGG + Chr1:3490836-3490855 MsG0180000260.01.T01:intron 55.0%
!! TCGGGTTTCGGATTCGGTGA+TGG - Chr1:3491899-3491918 None:intergenic 55.0%
AACCGGCACCTGCCAATGCA+CGG - Chr1:3491864-3491883 None:intergenic 60.0%
AGCAAGCGCCTGTAGCTCAG+TGG - Chr1:3490908-3490927 None:intergenic 60.0%
CAATGCACGGCGTTTGCGGA+CGG - Chr1:3491851-3491870 None:intergenic 60.0%
CACTGAAACGCGCCAGGTAG+GGG + Chr1:3490842-3490861 MsG0180000260.01.T01:intron 60.0%
CTGCCAATGCACGGCGTTTG+CGG - Chr1:3491855-3491874 None:intergenic 60.0%
GCACTGAAACGCGCCAGGTA+GGG + Chr1:3490841-3490860 MsG0180000260.01.T01:intron 60.0%
TCGTAGGTTCGACCCCTACC+TGG - Chr1:3490857-3490876 None:intergenic 60.0%
ACGGCGTTTGCGGACGGAGA+TGG - Chr1:3491845-3491864 None:intergenic 65.0%
ACGTGGCGCACCAACGTTGG+TGG + Chr1:3492540-3492559 MsG0180000260.01.T01:CDS 65.0%
CGTCCGCAAACGCCGTGCAT+TGG + Chr1:3491849-3491868 MsG0180000260.01.T01:CDS 65.0%
GTGACGTGGCGCACCAACGT+TGG + Chr1:3492537-3492556 MsG0180000260.01.T01:CDS 65.0%
! CGCAAACGCCGTGCATTGGC+AGG + Chr1:3491853-3491872 MsG0180000260.01.T01:CDS 65.0%
! GGCACTGAAACGCGCCAGGT+AGG + Chr1:3490840-3490859 MsG0180000260.01.T01:intron 65.0%
!! GTGCATTGGCAGGTGCCGGT+TGG + Chr1:3491863-3491882 MsG0180000260.01.T01:CDS 65.0%
! CGCCGTGCATTGGCAGGTGC+CGG + Chr1:3491859-3491878 MsG0180000260.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 3487377 3492910 3487377 ID=MsG0180000260.01;Name=MsG0180000260.01
Chr1 mRNA 3487377 3492910 3487377 ID=MsG0180000260.01.T01;Parent=MsG0180000260.01;Name=MsG0180000260.01.T01;_AED=0.44;_eAED=0.47;_QI=0|0.5|0.4|1|1|1|5|299|478
Chr1 exon 3492260 3492910 3492260 ID=MsG0180000260.01.T01:exon:6024;Parent=MsG0180000260.01.T01
Chr1 exon 3491840 3492135 3491840 ID=MsG0180000260.01.T01:exon:6023;Parent=MsG0180000260.01.T01
Chr1 exon 3491658 3491698 3491658 ID=MsG0180000260.01.T01:exon:6022;Parent=MsG0180000260.01.T01
Chr1 exon 3490079 3490721 3490079 ID=MsG0180000260.01.T01:exon:6021;Parent=MsG0180000260.01.T01
Chr1 exon 3487377 3487481 3487377 ID=MsG0180000260.01.T01:exon:6020;Parent=MsG0180000260.01.T01
Chr1 CDS 3487377 3487481 3487377 ID=MsG0180000260.01.T01:cds;Parent=MsG0180000260.01.T01
Chr1 CDS 3490079 3490721 3490079 ID=MsG0180000260.01.T01:cds;Parent=MsG0180000260.01.T01
Chr1 CDS 3491658 3491698 3491658 ID=MsG0180000260.01.T01:cds;Parent=MsG0180000260.01.T01
Chr1 CDS 3491840 3492135 3491840 ID=MsG0180000260.01.T01:cds;Parent=MsG0180000260.01.T01
Chr1 CDS 3492260 3492611 3492260 ID=MsG0180000260.01.T01:cds;Parent=MsG0180000260.01.T01
Chr1 three_prime_UTR 3492612 3492910 3492612 ID=MsG0180000260.01.T01:three_prime_utr;Parent=MsG0180000260.01.T01
Gene Sequence

>MsG0180000260.01.T01

ATGAAAATCTGCTTAGATTACCTCTCCAAATTTTCTGCAGATGATGATGACATCAGGAGAAATGTGAACACCGATACAAGAGCCTTGATGGAGTTCAAAGCTGGAGGAGAAAATAGCATAAAAATCAAAGCAGTATTAGAGGAATTACCAAAAGCAAAATCAAGGAATCCAAAGAAGAATGGAACTAAGATAGAAGTACCAAGTTTTCTAGGCGAAAAAATCGGTAAAGGAATGAAAATTGGAACGGTGAACATGGATGAAGACGATGATGTAAGCGAATGGAACATACATGGAGAAACAATACCAATTAATTTCGACAAAGTATCACAATTTTTCAACTGGACAGATTTATTTCCCGAATGGATCGACGAAGAAGAAGAAAGCGACGTTCCAACATGTCCCGAATTACCAATGCCAGAATTTGCAACATATGAAAACATGGACATAATAGTTGCAAAGTTACCATGCAAGTATCCATTAGAAGGGTGGGGGAGAGAAGTTTTAAGGTTACAAGTTCATCTTATAGTTGCAAATATGGTTGTGAAAAAGGGGAAGAATGATTGGAAATGGAAGAGTAAGGTTGTGTTTTGGAGTAAATGTAGACCAATGTTGGAGATTTTTAGATGTGATGATTTGGTTAAAAATGAAGGTGATTGGTGGTTTTATGAAGTTGATGTAAAGAAGTTGGAACAGAAAATTTCTTTGCCTGTTGGGTCTTGTAATTTGGCTTTGCCTCTATGGGAACAAGGGATTGACAAAGTTTACGACATGTCCAAAATGGAACAAAACCTCCATCTCCGTCCGCAAACGCCGTGCATTGGCAGGTGCCGGTTGGCAGATTCGAACCATCACCGAATCCGAAACCCGAGAGCAGAAAATGGAACATACAATGAGTATAATTATAGTAAGTTCCGGTTGTGGCAACTTACTGATTATGAGAAAATCATCTTTATAGATTCTGATATTCTTGTGCTGAGGAATCTTGATATTCTCTTCAACTTTCCTCAAATGTCTGCCACTGGGAATGATCAGTCCATTTTCAACTCTGGCATCATGGTTATTGAGCCTTCCAATTGTACCTTCAGTGTGCTTATGAGCCGGCGCCACGACATTGTATCATACAATGGAGGTGATCAAGGGTTTCTAAATGAGATATTTGTGTGGTGGCATAGACTTCCAAGAAGAGTAAACTATTTAAAGAATTTTTGGGCCAACACAACAGTAGAAGCAAGTGTGAAAAATGGCTTATTTAGTGCTGACCCTCCAAAACTATATGCCATTCACTACCTTGGTTTGAAACCTTGGCATTGCTATAGAGACTATGACTGCAATTGGGATGTGGTGGATCAAAGGGTTATGCTAGTGACGTGGCGCACCAACGTTGGTGGAATTTTCATGATAGAATGGACAAGAAGTTACAAAGTTTTTGTAGGTTGA
Protein sequence

>MsG0180000260.01.T01

MKICLDYLSKFSADDDDIRRNVNTDTRALMEFKAGGENSIKIKAVLEELPKAKSRNPKKNGTKIEVPSFLGEKIGKGMKIGTVNMDEDDDVSEWNIHGETIPINFDKVSQFFNWTDLFPEWIDEEEESDVPTCPELPMPEFATYENMDIIVAKLPCKYPLEGWGREVLRLQVHLIVANMVVKKGKNDWKWKSKVVFWSKCRPMLEIFRCDDLVKNEGDWWFYEVDVKKLEQKISLPVGSCNLALPLWEQGIDKVYDMSKMEQNLHLRPQTPCIGRCRLADSNHHRIRNPRAENGTYNEYNYSKFRLWQLTDYEKIIFIDSDILVLRNLDILFNFPQMSATGNDQSIFNSGIMVIEPSNCTFSVLMSRRHDIVSYNGGDQGFLNEIFVWWHRLPRRVNYLKNFWANTTVEASVKNGLFSADPPKLYAIHYLGLKPWHCYRDYDCNWDVVDQRVMLVTWRTNVGGIFMIEWTRSYKVFVG*