AlfalfaGEDB | MsG0180001175.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001175.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001175.01.T01	XP_013466593.1	94.531	128	6	1	9	135	45	172	2.28E-73	226

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001175.01.T01	A0A072VF21	94.531	128	6	1	9	135	45	172	1.09e-73	226

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0180001175.01	0.845793	3.253999e-59	5.486041e-56
MsG0080047945.01	MsG0180001175.01	0.843638	1.238705e-58	1.950524e-55
MsG0080047955.01	MsG0180001175.01	0.865655	5.046395e-65	1.654830e-61
MsG0080047956.01	MsG0180001175.01	0.844676	6.524276e-59	1.061170e-55
MsG0080047989.01	MsG0180001175.01	0.821139	4.731257e-53	3.817424e-50
MsG0080048068.01	MsG0180001175.01	0.829849	4.088350e-55	4.235583e-52
MsG0080048191.01	MsG0180001175.01	0.806921	6.502815e-50	3.573634e-47
MsG0080048198.01	MsG0180001175.01	0.826149	3.178688e-54	2.956598e-51
MsG0080048528.01	MsG0180001175.01	0.878615	2.433709e-69	1.279333e-65
MsG0080048727.01	MsG0180001175.01	0.895924	6.032534e-76	6.382213e-72

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001175.01.T01	MTR_1g032560	94.531	128	6	1	9	135	45	172	2.77e-77	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001175.01.T01	AT2G01755	54.545	132	58	2	5	134	42	173	1.92e-41	135
MsG0180001175.01.T01	AT2G01755	54.545	132	58	2	5	134	48	179	2.29e-41	135

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Find 39 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGCATTCTTCCAGCCA+GGG	0.602074	1:-16849675	MsG0180001175.01.T01:CDS
AAGTCTATAGATAGAATAAA+AGG	0.213144	1:-16849644	MsG0180001175.01.T01:CDS
AATGCTTCTTGTTGGGTCAG+GGG	0.544161	1:+16849688	None:intergenic
ACCAAAGAGGTATAAGCCTT+TGG	0.474169	1:-16850150	MsG0180001175.01.T01:CDS
ACCAAAGGCTTATACCTCTT+TGG	0.304276	1:+16850149	None:intergenic
ACTCATTGTTCATGCACTTG+TGG	0.576626	1:-16850011	MsG0180001175.01.T01:CDS
AGAATGCTTCTTGTTGGGTC+AGG	0.383377	1:+16849686	None:intergenic
AGAGGTATAAGCCTTTGGTG+TGG	0.717085	1:-16850145	MsG0180001175.01.T01:CDS
AGATGAGTATGGACACAATG+AGG	0.668828	1:-16850080	MsG0180001175.01.T01:CDS
AGGGGAAGTACCATAGCTCA+AGG	0.608247	1:+16849706	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTATCTTCAAGGTAAGTT+TGG	-	Chr1:16849884-16849903	MsG0180001175.01.T01:intron	30.0%
GGAAAGTTGTCAATTGATAA+TGG	+	Chr1:16849634-16849653	None:intergenic	30.0%
TGACAAACCATTTCATTTCA+GGG	-	Chr1:16850113-16850132	MsG0180001175.01.T01:CDS	30.0%
AGAAAACCCCTGAAATGAAA+TGG	+	Chr1:16850123-16850142	None:intergenic	35.0%
CAATATTGAGTATCTGCAGA+AGG	-	Chr1:16850247-16850266	MsG0180001175.01.T01:intron	35.0%
CAATGAGGAGATTTCAAAGT+TGG	-	Chr1:16849788-16849807	MsG0180001175.01.T01:intron	35.0%
CTTCTGCAGATACTCAATAT+TGG	+	Chr1:16850249-16850268	None:intergenic	35.0%
GACAAACCATTTCATTTCAG+GGG	-	Chr1:16850114-16850133	MsG0180001175.01.T01:CDS	35.0%
GATGAAGATAGAGATGAGTA+TGG	-	Chr1:16849762-16849781	MsG0180001175.01.T01:intron	35.0%
GCAAATTAGATACCAAGATG+AGG	-	Chr1:16849740-16849759	MsG0180001175.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	16849562	16850313	16849562	ID=MsG0180001175.01;Name=MsG0180001175.01
Chr1	mRNA	16849562	16850313	16849562	ID=MsG0180001175.01.T01;Parent=MsG0180001175.01;Name=MsG0180001175.01.T01;_AED=0.31;_eAED=0.31;_QI=0\|0\|0\|1\|1\|1\|3\|0\|135
Chr1	exon	16850289	16850313	16850289	ID=MsG0180001175.01.T01:exon:5122;Parent=MsG0180001175.01.T01
Chr1	exon	16849979	16850181	16849979	ID=MsG0180001175.01.T01:exon:5121;Parent=MsG0180001175.01.T01
Chr1	exon	16849562	16849741	16849562	ID=MsG0180001175.01.T01:exon:5120;Parent=MsG0180001175.01.T01
Chr1	CDS	16850289	16850313	16850289	ID=MsG0180001175.01.T01:cds;Parent=MsG0180001175.01.T01
Chr1	CDS	16849979	16850181	16849979	ID=MsG0180001175.01.T01:cds;Parent=MsG0180001175.01.T01
Chr1	CDS	16849562	16849741	16849562	ID=MsG0180001175.01.T01:cds;Parent=MsG0180001175.01.T01

Gene Sequence

>MsG0180001175.01.T01

ATGCATCCTACTACACTTCCCAAGGATTTGAGCAACCAAAGAGGTATAAGCCTTTGGTGTGGTGCAAGGAGGCAAATTAGATACCAAGATGAGGATGAAGATAGAGATGAGTATGGACACAATGAGGAGATTTCAAAGTTGGAATTCTATAGTCAATCAGCAAGAGGAGAAGCACTCATTGTTCATGCACTTGTGGACCAAATTGAAGTAGAAGTACTTATCTTCAAGGGGTTTTCTTCATCCTTGAGCTATGGTACTTCCCCTGACCCAACAAGAAGCATTCTTCCAGCCAGGGCAGTGATAAAGTCTATAGATAGAATAAAAGGGCCTTTTGACCCTGCCAATATTGAGTATCTGCAGAAGGATGTTCCATGGGAAGAATTCAAGACAAATATTCTTTCTAGCTAA

Protein sequence

>MsG0180001175.01.T01

MHPTTLPKDLSNQRGISLWCGARRQIRYQDEDEDRDEYGHNEEISKLEFYSQSARGEALIVHALVDQIEVEVLIFKGFSSSLSYGTSPDPTRSILPARAVIKSIDRIKGPFDPANIEYLQKDVPWEEFKTNILSS*