AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047910.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047910.01.T01 MTR_8g088420 74.874 398 37 5 1 398 1 335 0.0 567
MsG0080047910.01.T01 MTR_8g088420 74.121 398 37 6 1 398 1 332 0.0 556
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047910.01.T01 AT1G55480 53.886 386 101 13 21 398 19 335 1.04e-107 320

Find 103 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAAGAAGCTCTGAATTC+TGG 0.228235 contig142end:+51779 MsG0080047910.01.T01:CDS
TTCAATAATGGATCGAATTC+CGG 0.233768 contig142end:-51938 None:intergenic
AATGCCATCAAATCAATATT+TGG 0.237285 contig142end:+51998 MsG0080047910.01.T01:CDS
TATTCCAAATATTGATTTGA+TGG 0.245252 contig142end:-52002 None:intergenic
TATGGTATCAAATTTGTAAA+AGG 0.254004 contig142end:+48832 MsG0080047910.01.T01:CDS
AGAGAAATTTGAGTCTGTTC+TGG 0.274480 contig142end:+50416 MsG0080047910.01.T01:CDS
AGCACATATAATCTGTAAAT+TGG 0.303417 contig142end:-50525 None:intergenic
TCAATAATGGATCGAATTCC+GGG 0.313549 contig142end:-51937 None:intergenic
TGAGTAACGGTCCAATTCTT+TGG 0.315025 contig142end:-49427 None:intergenic
ACCTCTCATCTTCTTCTTTG+TGG 0.326142 contig142end:+48443 MsG0080047910.01.T01:five_prime_UTR
ATTTGGCCAGCTGCTGAATA+TGG 0.332460 contig142end:+49383 MsG0080047910.01.T01:CDS
ACTGCTGCTTCATCAGGTTC+TGG 0.337193 contig142end:-50447 None:intergenic
GAAGAAATCAACTTGGTAAT+GGG 0.348079 contig142end:-48649 None:intergenic
ATCCTGACCTTGCTAACTTA+AGG 0.358663 contig142end:+51909 MsG0080047910.01.T01:CDS
ATGAAGCTTTAACCACAAAA+AGG 0.369840 contig142end:-48714 None:intergenic
TACACAATTCGCCAAAGAAT+TGG 0.370489 contig142end:+49416 MsG0080047910.01.T01:CDS
CTTTCTTGTGTCCATACAAA+GGG 0.376392 contig142end:-52060 None:intergenic
TATTGATTTGATGGCATTGA+TGG 0.383403 contig142end:-51993 None:intergenic
ACTGATACTAATATTATTGT+TGG 0.385181 contig142end:-52260 None:intergenic
CTTGCGACTGCTGCTTCATC+AGG 0.385633 contig142end:-50453 None:intergenic
GGAAGAAATCAACTTGGTAA+TGG 0.386365 contig142end:-48650 None:intergenic
TAATGGGAAAATAATGAGTT+GGG 0.394318 contig142end:-48633 None:intergenic
GAGAAGGCTTATTACTATAC+AGG 0.400934 contig142end:+49864 MsG0080047910.01.T01:CDS
TTGATTTGGGTTGTTCTTGT+TGG 0.403471 contig142end:-48598 None:intergenic
TTTACAAATTTGATACCATA+AGG 0.409936 contig142end:-48829 None:intergenic
TTTGGCTTAACAGGTTGGGC+TGG 0.415582 contig142end:+51104 MsG0080047910.01.T01:intron
CCACGGGTCTGCTCTTAACT+TGG 0.415697 contig142end:-51154 None:intergenic
GAGAGAAATGTTATGTTCCT+TGG 0.418425 contig142end:-48477 None:intergenic
GAGAAATTTGAGTCTGTTCT+GGG 0.421833 contig142end:+50417 MsG0080047910.01.T01:CDS
TCCTGACCTTGCTAACTTAA+GGG 0.425185 contig142end:+51910 MsG0080047910.01.T01:CDS
GGCTGGTGGCTGCACCATGC+TGG 0.427511 contig142end:+51121 MsG0080047910.01.T01:CDS
AATTCAGGAAAGATAGAAAC+TGG 0.428336 contig142end:+49580 MsG0080047910.01.T01:intron
GTAGAGATTGATCAACCTTA+TGG 0.429871 contig142end:+48814 MsG0080047910.01.T01:CDS
GTCCTTCCATATTCAGCAGC+TGG 0.462405 contig142end:-49389 None:intergenic
GCGCTTCACTACTTCAACAT+TGG 0.465583 contig142end:+50548 MsG0080047910.01.T01:CDS
TGGTGGTGATTTAACTGAAA+AGG 0.465918 contig142end:+49600 MsG0080047910.01.T01:CDS
TCTACCTCATACTCTTCATA+TGG 0.466016 contig142end:-48796 None:intergenic
GTCTGCTCTTAACTTGGAAC+GGG 0.467612 contig142end:-51148 None:intergenic
ATGAGAATGCAGAAGAGATA+TGG 0.467750 contig142end:+49449 MsG0080047910.01.T01:CDS
ACCTGGTGGATCAGCTGATA+AGG 0.468201 contig142end:+48888 MsG0080047910.01.T01:CDS
GCCCTTAAGTTAGCAAGGTC+AGG 0.473310 contig142end:-51911 None:intergenic
GGCTTAACAGGTTGGGCTGG+TGG 0.474872 contig142end:+51107 MsG0080047910.01.T01:intron
AAAAGAAGTGAAAGAGGGTC+GGG 0.478878 contig142end:+49829 MsG0080047910.01.T01:CDS
TCCAAAGAAGAGAGTGAAAA+GGG 0.480051 contig142end:+48757 MsG0080047910.01.T01:CDS
CTGAAGGAATGCTAAATATG+AGG 0.486992 contig142end:+50386 MsG0080047910.01.T01:intron
GAGTCCTGTGGGTCTTAGAC+AGG 0.490894 contig142end:+51194 MsG0080047910.01.T01:CDS
ATCCAAAGAAGAGAGTGAAA+AGG 0.492142 contig142end:+48756 MsG0080047910.01.T01:CDS
AGAGTAGTGGCCACTGGTGG+TGG 0.498072 contig142end:-48563 None:intergenic
GTGTAGTCAGTAACAAATTG+AGG 0.501089 contig142end:+49650 MsG0080047910.01.T01:CDS
GCTTTCTTGTGTCCATACAA+AGG 0.502554 contig142end:-52061 None:intergenic
ATGCCTTCGCTCAAGTCCCA+CGG 0.502791 contig142end:-51171 None:intergenic
GTAATGGGAAAATAATGAGT+TGG 0.504617 contig142end:-48634 None:intergenic
TGCTAACTTAAGGGCATCCC+CGG 0.505200 contig142end:+51919 MsG0080047910.01.T01:CDS
AGAGCCATATGAAGAGTATG+AGG 0.513381 contig142end:+48792 MsG0080047910.01.T01:CDS
GTTATGTTAAGCTCAAAACT+TGG 0.516234 contig142end:-48520 None:intergenic
GGGTCTTAGACAGGAGGGTA+TGG 0.516278 contig142end:+51203 MsG0080047910.01.T01:CDS
TTCAGATGCAAAACTACCTA+AGG 0.524675 contig142end:+49804 MsG0080047910.01.T01:intron
CGGGAAAATGATTTGAGAGA+AGG 0.524777 contig142end:+49848 MsG0080047910.01.T01:CDS
AAGGCTGGTGTCTTCACTGT+TGG 0.533258 contig142end:+48907 MsG0080047910.01.T01:CDS
TGCCTTCGCTCAAGTCCCAC+GGG 0.541045 contig142end:-51170 None:intergenic
GTGATAAAGTACTTGCCACC+AGG 0.541930 contig142end:+48929 MsG0080047910.01.T01:CDS
GCCTTATCAGCTGATCCACC+AGG 0.542146 contig142end:-48889 None:intergenic
TGTAGTCAGTAACAAATTGA+GGG 0.542149 contig142end:+49651 MsG0080047910.01.T01:CDS
GAAGAGAGTGAAAAGGGTGA+AGG 0.542694 contig142end:+48763 MsG0080047910.01.T01:CDS
GGTTAAAGCTTCATCTGAAG+TGG 0.543836 contig142end:+48723 MsG0080047910.01.T01:CDS
GGTCTGCTCTTAACTTGGAA+CGG 0.547649 contig142end:-51149 None:intergenic
ATTAGAGCTGAGAGGAACTC+TGG 0.547874 contig142end:+49628 MsG0080047910.01.T01:CDS
TTGGAACGGGCAGGCCAGCA+TGG 0.558869 contig142end:-51135 None:intergenic
GCTCTTAACTTGGAACGGGC+AGG 0.559101 contig142end:-51144 None:intergenic
ATGTTATGTTCCTTGGAGCA+TGG 0.560893 contig142end:-48470 None:intergenic
CACGGAGAAATCAAATGTGG+TGG 0.571593 contig142end:-52126 None:intergenic
GAGCGAAGGCATGAGTCCTG+TGG 0.574117 contig142end:+51182 MsG0080047910.01.T01:CDS
TGCTCAACAAACTCCTTAGT+CGG 0.574152 contig142end:-52095 None:intergenic
AGCGAAGGCATGAGTCCTGT+GGG 0.574982 contig142end:+51183 MsG0080047910.01.T01:CDS
TCCTGTGGGTCTTAGACAGG+AGG 0.575890 contig142end:+51197 MsG0080047910.01.T01:CDS
TACATTGATGCTATTGCACC+TGG 0.576493 contig142end:+48871 MsG0080047910.01.T01:CDS
GACCCGTGGGACTTGAGCGA+AGG 0.580235 contig142end:+51168 MsG0080047910.01.T01:CDS
TTCTGCATTCTCATGAGTAA+CGG 0.581312 contig142end:-49440 None:intergenic
CCCTCCTGTCTAAGACCCAC+AGG 0.584084 contig142end:-51198 None:intergenic
TTGTGGTAAGCCATGCTCCA+AGG 0.588816 contig142end:+48460 MsG0080047910.01.T01:five_prime_UTR
GGTGGATCAGCTGATAAGGC+TGG 0.589206 contig142end:+48892 MsG0080047910.01.T01:CDS
TTTGTAAAAGGAAGAGATGG+TGG 0.593264 contig142end:+48844 MsG0080047910.01.T01:CDS
GTTAAAGCTTCATCTGAAGT+GGG 0.593313 contig142end:+48724 MsG0080047910.01.T01:CDS
AAATTTGTAAAAGGAAGAGA+TGG 0.594574 contig142end:+48841 MsG0080047910.01.T01:CDS
AAAGTGTATTGGAAAATGAG+TGG 0.595653 contig142end:-48678 None:intergenic
GGCCAGCTGCTGAATATGGA+AGG 0.598815 contig142end:+49387 MsG0080047910.01.T01:CDS
GCAATGAAAGTGCAGAGTAG+TGG 0.611656 contig142end:-48576 None:intergenic
CCAAGTTAAGAGCAGACCCG+TGG 0.615299 contig142end:+51154 MsG0080047910.01.T01:CDS
TTGTTACTCTAAGCTAAACC+AGG 0.621899 contig142end:+50491 MsG0080047910.01.T01:CDS
GGGATGCCCTTAAGTTAGCA+AGG 0.635366 contig142end:-51916 None:intergenic
AAGTGCAGAGTAGTGGCCAC+TGG 0.641237 contig142end:-48569 None:intergenic
ATTGATGCTATTGCACCTGG+TGG 0.648922 contig142end:+48874 MsG0080047910.01.T01:CDS
TTTCTTGTGTCCATACAAAG+GGG 0.650984 contig142end:-52059 None:intergenic
CCTGTGGGTCTTAGACAGGA+GGG 0.653318 contig142end:+51198 MsG0080047910.01.T01:CDS
ACCACAAAGAAGAAGATGAG+AGG 0.665152 contig142end:-48444 None:intergenic
TCTATGTCTACCACCACCAG+TGG 0.666735 contig142end:+48553 MsG0080047910.01.T01:CDS
CAATAATGGATCGAATTCCG+GGG 0.672051 contig142end:-51936 None:intergenic
AGGAGATCATTAGAGCTGAG+AGG 0.676541 contig142end:+49620 MsG0080047910.01.T01:CDS
CAAGTTAAGAGCAGACCCGT+GGG 0.679937 contig142end:+51155 MsG0080047910.01.T01:CDS
ATACACGGAGAAATCAAATG+TGG 0.688691 contig142end:-52129 None:intergenic
TCAGGAAAGATAGAAACTGG+TGG 0.695306 contig142end:+49583 MsG0080047910.01.T01:intron
TGCAGAGTAGTGGCCACTGG+TGG 0.703482 contig142end:-48566 None:intergenic
GGTAGACATAGATAATGACA+TGG 0.735400 contig142end:-48542 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAATATCTTATAAAAA+AGG - contig142end:49737-49756 None:intergenic 10.0%
!!! ATATTTTTGTAGTTAAATAT+AGG + contig142end:52150-52169 MsG0080047910.01.T01:three_prime_UTR 10.0%
!! ATTAAACAAACAAATTGATT+TGG + contig142end:51678-51697 MsG0080047910.01.T01:intron 15.0%
!! TTAAGATTAAGATGAAAATA+GGG + contig142end:50760-50779 MsG0080047910.01.T01:intron 15.0%
!! TTACATACAAAAAATCATAA+GGG + contig142end:50103-50122 MsG0080047910.01.T01:intron 15.0%
!! TTTAACTACAAAAATATACA+CGG - contig142end:52147-52166 None:intergenic 15.0%
!! TTTACATACAAAAAATCATA+AGG + contig142end:50102-50121 MsG0080047910.01.T01:intron 15.0%
!!! AATGAAAGTTTCTTTTTTTT+TGG + contig142end:48998-49017 MsG0080047910.01.T01:intron 15.0%
!! CAAATGTTAAAAGGAAAAAT+GGG - contig142end:51628-51647 None:intergenic 20.0%
!! GTTAAGATTAAGATGAAAAT+AGG + contig142end:50759-50778 MsG0080047910.01.T01:intron 20.0%
!! TAAAGTAAGGAATAAAGTAT+TGG + contig142end:50172-50191 MsG0080047910.01.T01:intron 20.0%
!! TAAGATTAAGATGAAAATAG+GGG + contig142end:50761-50780 MsG0080047910.01.T01:intron 20.0%
!! TATGGTATCAAATTTGTAAA+AGG + contig142end:48832-48851 MsG0080047910.01.T01:CDS 20.0%
!! TCAAATGTTAAAAGGAAAAA+TGG - contig142end:51629-51648 None:intergenic 20.0%
!! TGGAATATAGTTTCTTAAAT+GGG - contig142end:50892-50911 None:intergenic 20.0%
!! TTGGAATATAGTTTCTTAAA+TGG - contig142end:50893-50912 None:intergenic 20.0%
!! TTTACAAATTTGATACCATA+AGG - contig142end:48832-48851 None:intergenic 20.0%
!!! ACTTTATTAGCATATTGATT+AGG - contig142end:51720-51739 None:intergenic 20.0%
!!! ATGTAATTAAAGCATCATTT+AGG + contig142end:51512-51531 MsG0080047910.01.T01:intron 20.0%
!!! ATTTTTTGACAGAAAGTTAT+TGG - contig142end:50664-50683 None:intergenic 20.0%
!!! TATATATTTTGACATTAGAG+CGG + contig142end:51483-51502 MsG0080047910.01.T01:intron 20.0%
!!! TATTCCAAATATTGATTTGA+TGG - contig142end:52005-52024 None:intergenic 20.0%
!!! TCATCAAATCTTTTCAATAA+TGG - contig142end:51953-51972 None:intergenic 20.0%
!!! TCTTTGATCAATAATTTTTG+AGG + contig142end:49308-49327 MsG0080047910.01.T01:intron 20.0%
!!! TGTAATTAAAGCATCATTTA+GGG + contig142end:51513-51532 MsG0080047910.01.T01:intron 20.0%
!!! TTTTCTTTCTGTCTTTATTT+CGG + contig142end:49912-49931 MsG0080047910.01.T01:intron 20.0%
! AAATTGGACAAAAATATACC+TGG - contig142end:50512-50531 None:intergenic 25.0%
! AAATTGGTGTAATTGATTGA+TGG + contig142end:51578-51597 MsG0080047910.01.T01:intron 25.0%
! AAATTTGTAAAAGGAAGAGA+TGG + contig142end:48841-48860 MsG0080047910.01.T01:CDS 25.0%
! AATATGAACCCAAAAAATGA+TGG - contig142end:51338-51357 None:intergenic 25.0%
! AATATGAACTCAAAAACTGA+TGG - contig142end:51373-51392 None:intergenic 25.0%
! AATGCCATCAAATCAATATT+TGG + contig142end:51998-52017 MsG0080047910.01.T01:CDS 25.0%
! ACAAGTTTGAGAAATGAAAA+TGG - contig142end:49778-49797 None:intergenic 25.0%
! ACCAATACTCAAATGTTAAA+AGG - contig142end:51637-51656 None:intergenic 25.0%
! AGAGCAAATTAAATTGTGTA+TGG + contig142end:50711-50730 MsG0080047910.01.T01:intron 25.0%
! AGCACATATAATCTGTAAAT+TGG - contig142end:50528-50547 None:intergenic 25.0%
! ATCAATAAAGTGTGCAATAA+TGG - contig142end:50062-50081 None:intergenic 25.0%
! ATTATTGCACACTTTATTGA+TGG + contig142end:50061-50080 MsG0080047910.01.T01:intron 25.0%
! CACCTCATTTAATATACATA+AGG - contig142end:49232-49251 None:intergenic 25.0%
! GAACAAGTATGTGTTTATAA+AGG + contig142end:51000-51019 MsG0080047910.01.T01:intron 25.0%
! GAGAATTATAGATAGATGTT+TGG + contig142end:49022-49041 MsG0080047910.01.T01:intron 25.0%
! GAGCAAATTAAATTGTGTAT+GGG + contig142end:50712-50731 MsG0080047910.01.T01:intron 25.0%
! GGAATATAGTTTCTTAAATG+GGG - contig142end:50891-50910 None:intergenic 25.0%
! GTTCAAGATAGTTATTTGAA+GGG + contig142end:49076-49095 MsG0080047910.01.T01:intron 25.0%
! TAATGGGAAAATAATGAGTT+GGG - contig142end:48636-48655 None:intergenic 25.0%
! TAGTCACTCACATATATAAA+AGG - contig142end:50634-50653 None:intergenic 25.0%
! TGCCTTATGTATATTAAATG+AGG + contig142end:49227-49246 MsG0080047910.01.T01:intron 25.0%
! TGTTCAAGATAGTTATTTGA+AGG + contig142end:49075-49094 MsG0080047910.01.T01:intron 25.0%
!! AGAAGTTGAACATTTTCATT+CGG - contig142end:49340-49359 None:intergenic 25.0%
!! ATAACTTGTCAAAAGTAGTT+GGG + contig142end:50852-50871 MsG0080047910.01.T01:intron 25.0%
!! GTAATTAAAGCATCATTTAG+GGG + contig142end:51514-51533 MsG0080047910.01.T01:intron 25.0%
!! TATAACTTGTCAAAAGTAGT+TGG + contig142end:50851-50870 MsG0080047910.01.T01:intron 25.0%
!! TCCTTTTAACATTTGAGTAT+TGG + contig142end:51633-51652 MsG0080047910.01.T01:intron 25.0%
!! TCTAATAAGTTTTGCATAAG+AGG + contig142end:51451-51470 MsG0080047910.01.T01:intron 25.0%
!!! AAGGGGTTTTTTTCTAATAA+TGG - contig142end:52045-52064 None:intergenic 25.0%
!!! AGGGGTTTTTTTCTAATAAT+GGG - contig142end:52044-52063 None:intergenic 25.0%
!!! ATTTTTGTCATTTGTTGGAT+TGG + contig142end:52179-52198 MsG0080047910.01.T01:three_prime_UTR 25.0%
!!! TTGATTGATGGTTGTTTTAA+TGG + contig142end:51590-51609 MsG0080047910.01.T01:intron 25.0%
!!! TTTTGAGTTCATATTTGTAG+AGG + contig142end:51378-51397 MsG0080047910.01.T01:intron 25.0%
AAAGTGTATTGGAAAATGAG+TGG - contig142end:48681-48700 None:intergenic 30.0%
AAGGAAAAAAGAAGTGAAAG+AGG + contig142end:49823-49842 MsG0080047910.01.T01:CDS 30.0%
AATAAGCAGTGGAGTAATAA+AGG - contig142end:50153-50172 None:intergenic 30.0%
AATTCAGGAAAGATAGAAAC+TGG + contig142end:49580-49599 MsG0080047910.01.T01:intron 30.0%
ACTTCCATTATGAAATGTCA+AGG - contig142end:49973-49992 None:intergenic 30.0%
AGGAAAAAAGAAGTGAAAGA+GGG + contig142end:49824-49843 MsG0080047910.01.T01:CDS 30.0%
ATATATGTGAGTGACTAACT+TGG + contig142end:50637-50656 MsG0080047910.01.T01:intron 30.0%
CTTCCATTATGAAATGTCAA+GGG - contig142end:49972-49991 None:intergenic 30.0%
GGATTAATATCTGATTGGAT+TGG + contig142end:49097-49116 MsG0080047910.01.T01:intron 30.0%
GTTATGTTAAGCTCAAAACT+TGG - contig142end:48523-48542 None:intergenic 30.0%
TAGAAAAAAACCCCTTTGTA+TGG + contig142end:52049-52068 MsG0080047910.01.T01:three_prime_UTR 30.0%
TGAAGGGATTAATATCTGAT+TGG + contig142end:49092-49111 MsG0080047910.01.T01:intron 30.0%
TGTAGTCAGTAACAAATTGA+GGG + contig142end:49651-49670 MsG0080047910.01.T01:CDS 30.0%
TTCCATATTCTAACCAATGT+GGG - contig142end:50983-51002 None:intergenic 30.0%
TTCCTTACTTTAATAAGCAG+TGG - contig142end:50164-50183 None:intergenic 30.0%
TTTCCCTTGACATTTCATAA+TGG + contig142end:49966-49985 MsG0080047910.01.T01:intron 30.0%
! ATGAAGCTTTAACCACAAAA+AGG - contig142end:48717-48736 None:intergenic 30.0%
! ATTGGAAAATGAGTGGTTTT+TGG - contig142end:48674-48693 None:intergenic 30.0%
! GAAGAAATCAACTTGGTAAT+GGG - contig142end:48652-48671 None:intergenic 30.0%
! GTAATGGGAAAATAATGAGT+TGG - contig142end:48637-48656 None:intergenic 30.0%
! TAAATCAGCCACAATGTTTT+TGG + contig142end:50818-50837 MsG0080047910.01.T01:intron 30.0%
! TAACTTGTCAAAAGTAGTTG+GGG + contig142end:50853-50872 MsG0080047910.01.T01:intron 30.0%
!! AATTTAATTTGCTCTGCTGT+AGG - contig142end:50706-50725 None:intergenic 30.0%
!! ACAGATTAGCAGTTTTAACA+TGG - contig142end:49695-49714 None:intergenic 30.0%
!! CGAAGCATCTATTTTAGATT+AGG + contig142end:50300-50319 MsG0080047910.01.T01:intron 30.0%
!! CTCTCATTTTTGTCATTTGT+TGG + contig142end:52174-52193 MsG0080047910.01.T01:three_prime_UTR 30.0%
!! GTTTTTGGAAGAAATCAACT+TGG - contig142end:48659-48678 None:intergenic 30.0%
!! TATTGATTTGATGGCATTGA+TGG - contig142end:51996-52015 None:intergenic 30.0%
!! TTCAATAATGGATCGAATTC+CGG - contig142end:51941-51960 None:intergenic 30.0%
!!! AAGATATTTTTTCTCCCATG+TGG + contig142end:49744-49763 MsG0080047910.01.T01:intron 30.0%
!!! AGATATTTTTTCTCCCATGT+GGG + contig142end:49745-49764 MsG0080047910.01.T01:intron 30.0%
!!! CTTTCACTTCTTTTTTCCTT+AGG - contig142end:49823-49842 None:intergenic 30.0%
!!! GCTTTTTTCTCTCTCAAAAT+AGG - contig142end:50272-50291 None:intergenic 30.0%
!!! GGGGTTTTTTTCTAATAATG+GGG - contig142end:52043-52062 None:intergenic 30.0%
!!! TTTTTTGGGTTCATATTGTG+TGG + contig142end:51341-51360 MsG0080047910.01.T01:intron 30.0%
AAAAAGAAGTGAAAGAGGGT+CGG + contig142end:49828-49847 MsG0080047910.01.T01:CDS 35.0%
AAGACTGTTTGAGAGAGTTA+TGG + contig142end:49177-49196 MsG0080047910.01.T01:intron 35.0%
ACCCAAAAAATGATGGTTCA+AGG - contig142end:51331-51350 None:intergenic 35.0%
ACCGTAAACCAAAAACATTG+TGG - contig142end:50829-50848 None:intergenic 35.0%
AGAGAAATTTGAGTCTGTTC+TGG + contig142end:50416-50435 MsG0080047910.01.T01:CDS 35.0%
ATAATGAATCCAAGATGGTG+TGG - contig142end:50958-50977 None:intergenic 35.0%
ATACACGGAGAAATCAAATG+TGG - contig142end:52132-52151 None:intergenic 35.0%
ATCCAAAGAAGAGAGTGAAA+AGG + contig142end:48756-48775 MsG0080047910.01.T01:CDS 35.0%
ATGAGAATGCAGAAGAGATA+TGG + contig142end:49449-49468 MsG0080047910.01.T01:CDS 35.0%
ATGCAATTGAAGCTTCTTTC+AGG + contig142end:51409-51428 MsG0080047910.01.T01:intron 35.0%
CCAAAAAATGATGGTTCAAG+GGG - contig142end:51329-51348 None:intergenic 35.0%
CCCAAAAAATGATGGTTCAA+GGG - contig142end:51330-51349 None:intergenic 35.0%
CTCCACTGCTTATTAAAGTA+AGG + contig142end:50159-50178 MsG0080047910.01.T01:intron 35.0%
CTGAAGGAATGCTAAATATG+AGG + contig142end:50386-50405 MsG0080047910.01.T01:intron 35.0%
CTTGTCAGACATTATAGACA+TGG + contig142end:50205-50224 MsG0080047910.01.T01:intron 35.0%
CTTTCTTGTGTCCATACAAA+GGG - contig142end:52063-52082 None:intergenic 35.0%
GAGAAATTTGAGTCTGTTCT+GGG + contig142end:50417-50436 MsG0080047910.01.T01:CDS 35.0%
GAGAAGGCTTATTACTATAC+AGG + contig142end:49864-49883 MsG0080047910.01.T01:CDS 35.0%
GAGAGAAATGTTATGTTCCT+TGG - contig142end:48480-48499 None:intergenic 35.0%
GCTTTAACCACAAAAAGGAA+CGG - contig142end:48712-48731 None:intergenic 35.0%
GGAAGAAATCAACTTGGTAA+TGG - contig142end:48653-48672 None:intergenic 35.0%
GGTAGACATAGATAATGACA+TGG - contig142end:48545-48564 None:intergenic 35.0%
GTAGAGATTGATCAACCTTA+TGG + contig142end:48814-48833 MsG0080047910.01.T01:CDS 35.0%
GTCAAGGGAAAGATAAATGA+AGG - contig142end:49957-49976 None:intergenic 35.0%
GTGTAGTCAGTAACAAATTG+AGG + contig142end:49650-49669 MsG0080047910.01.T01:CDS 35.0%
GTTAAAACAGCAACAGTGTT+AGG - contig142end:51874-51893 None:intergenic 35.0%
GTTCCATATTCTAACCAATG+TGG - contig142end:50984-51003 None:intergenic 35.0%
TAAATGGGGTAGCATTAAGT+TGG - contig142end:50912-50931 None:intergenic 35.0%
TACACAATTCGCCAAAGAAT+TGG + contig142end:49416-49435 MsG0080047910.01.T01:CDS 35.0%
TCCAAAGAAGAGAGTGAAAA+GGG + contig142end:48757-48776 MsG0080047910.01.T01:CDS 35.0%
TCTACCTCATACTCTTCATA+TGG - contig142end:48799-48818 None:intergenic 35.0%
TCTATTCAGCAAGCTATACA+AGG - contig142end:50605-50624 None:intergenic 35.0%
TGAACCATGGTTATCAATTC+AGG + contig142end:49565-49584 MsG0080047910.01.T01:intron 35.0%
TGATTAGGTAAATGCATGAC+AGG - contig142end:51705-51724 None:intergenic 35.0%
TGCAATTGAAGCTTCTTTCA+GGG + contig142end:51410-51429 MsG0080047910.01.T01:intron 35.0%
TTCAGATGCAAAACTACCTA+AGG + contig142end:49804-49823 MsG0080047910.01.T01:intron 35.0%
TTCTGCATTCTCATGAGTAA+CGG - contig142end:49443-49462 None:intergenic 35.0%
TTGTTACTCTAAGCTAAACC+AGG + contig142end:50491-50510 MsG0080047910.01.T01:CDS 35.0%
TTGTTTGTGAACTTAGCTCA+CGG + contig142end:49537-49556 MsG0080047910.01.T01:intron 35.0%
TTTCTTGTGTCCATACAAAG+GGG - contig142end:52062-52081 None:intergenic 35.0%
TTTGTAAAAGGAAGAGATGG+TGG + contig142end:48844-48863 MsG0080047910.01.T01:CDS 35.0%
! AAAACGATTTTCTGAGTCAC+TGG - contig142end:49896-49915 None:intergenic 35.0%
! AACTCAAAAACTGATGGTGA+TGG - contig142end:51367-51386 None:intergenic 35.0%
! AAGTTTTGCATAAGAGGTGA+GGG + contig142end:51457-51476 MsG0080047910.01.T01:intron 35.0%
! ATGAAAAGCACAAACAAACC+TGG - contig142end:48950-48969 None:intergenic 35.0%
! ATTAAAGCATCATTTAGGGG+AGG + contig142end:51517-51536 MsG0080047910.01.T01:intron 35.0%
! CTTTCCTGAATTGATAACCA+TGG - contig142end:49572-49591 None:intergenic 35.0%
! GAATTGATAACCATGGTTCA+TGG - contig142end:49565-49584 None:intergenic 35.0%
! GTTAAAGCTTCATCTGAAGT+GGG + contig142end:48724-48743 MsG0080047910.01.T01:CDS 35.0%
! TAAGTTTTGCATAAGAGGTG+AGG + contig142end:51456-51475 MsG0080047910.01.T01:intron 35.0%
! TGGTGGTGATTTAACTGAAA+AGG + contig142end:49600-49619 MsG0080047910.01.T01:CDS 35.0%
! TTAAAGCATCATTTAGGGGA+GGG + contig142end:51518-51537 MsG0080047910.01.T01:intron 35.0%
!! ATAATGAGTTGGGTTTTGCT+TGG - contig142end:48626-48645 None:intergenic 35.0%
!! ATTTTGACATTAGAGCGGAA+GGG + contig142end:51488-51507 MsG0080047910.01.T01:intron 35.0%
!! GTTTTGCTTGGAGTTGATTT+GGG - contig142end:48614-48633 None:intergenic 35.0%
!! TCAATAATGGATCGAATTCC+GGG - contig142end:51940-51959 None:intergenic 35.0%
!! TTGATTTGGGTTGTTCTTGT+TGG - contig142end:48601-48620 None:intergenic 35.0%
!!! CCCTTGAACCATCATTTTTT+GGG + contig142end:51327-51346 MsG0080047910.01.T01:intron 35.0%
!!! CTGTTTTTGGGACTGAAATT+TGG + contig142end:49366-49385 MsG0080047910.01.T01:CDS 35.0%
!!! GATATTTTTTCTCCCATGTG+GGG + contig142end:49746-49765 MsG0080047910.01.T01:intron 35.0%
!!! GCCACAATGTTTTTGGTTTA+CGG + contig142end:50825-50844 MsG0080047910.01.T01:intron 35.0%
!!! TATTTTGACATTAGAGCGGA+AGG + contig142end:51487-51506 MsG0080047910.01.T01:intron 35.0%
!!! TTCTGGTTTTGAAGACTTCA+AGG + contig142end:51796-51815 MsG0080047910.01.T01:CDS 35.0%
AAAAGAAGTGAAAGAGGGTC+GGG + contig142end:49829-49848 MsG0080047910.01.T01:CDS 40.0%
AAAATGGTTGTAACCCCACA+TGG - contig142end:49762-49781 None:intergenic 40.0%
AAATGGTTGTAACCCCACAT+GGG - contig142end:49761-49780 None:intergenic 40.0%
AACTTAATGCCACACCATCT+TGG + contig142end:50946-50965 MsG0080047910.01.T01:intron 40.0%
AAGATGGTGTGGCATTAAGT+TGG - contig142end:50947-50966 None:intergenic 40.0%
ACCACAAAGAAGAAGATGAG+AGG - contig142end:48447-48466 None:intergenic 40.0%
ACCTCTCATCTTCTTCTTTG+TGG + contig142end:48443-48462 MsG0080047910.01.T01:five_prime_UTR 40.0%
AGTGAACGGTAAGGATATCA+GGG - contig142end:50348-50367 None:intergenic 40.0%
AGTTCATATTTGTAGAGGCG+AGG + contig142end:51383-51402 MsG0080047910.01.T01:intron 40.0%
ATCCTGACCTTGCTAACTTA+AGG + contig142end:51909-51928 MsG0080047910.01.T01:CDS 40.0%
ATGTTATGTTCCTTGGAGCA+TGG - contig142end:48473-48492 None:intergenic 40.0%
CGGGAAAATGATTTGAGAGA+AGG + contig142end:49848-49867 MsG0080047910.01.T01:CDS 40.0%
GAATCCAGGAAAAGAGTGAA+CGG - contig142end:50362-50381 None:intergenic 40.0%
GCAATTGAAGCTTCTTTCAG+GGG + contig142end:51411-51430 MsG0080047910.01.T01:intron 40.0%
GCTTTCTTGTGTCCATACAA+AGG - contig142end:52064-52083 None:intergenic 40.0%
GGATTCATTATGTCCCACAT+TGG + contig142end:50967-50986 MsG0080047910.01.T01:intron 40.0%
GGGACATAATGAATCCAAGA+TGG - contig142end:50963-50982 None:intergenic 40.0%
GGTTAAAGCTTCATCTGAAG+TGG + contig142end:48723-48742 MsG0080047910.01.T01:CDS 40.0%
GTTCATATTTGTAGAGGCGA+GGG + contig142end:51384-51403 MsG0080047910.01.T01:intron 40.0%
TACATTGATGCTATTGCACC+TGG + contig142end:48871-48890 MsG0080047910.01.T01:CDS 40.0%
TCAGGAAAGATAGAAACTGG+TGG + contig142end:49583-49602 MsG0080047910.01.T01:intron 40.0%
TCCTGACCTTGCTAACTTAA+GGG + contig142end:51910-51929 MsG0080047910.01.T01:CDS 40.0%
TGAGTAACGGTCCAATTCTT+TGG - contig142end:49430-49449 None:intergenic 40.0%
TGCTCAACAAACTCCTTAGT+CGG - contig142end:52098-52117 None:intergenic 40.0%
TTTATAAAGGTCTGCCATGC+TGG + contig142end:51013-51032 MsG0080047910.01.T01:intron 40.0%
TTTCCTGGATTCAATGCTGA+AGG + contig142end:50370-50389 MsG0080047910.01.T01:intron 40.0%
! AAAAGCACAAACAAACCTGG+TGG - contig142end:48947-48966 None:intergenic 40.0%
! ACCACAAAAAGGAACGGTTT+TGG - contig142end:48706-48725 None:intergenic 40.0%
! ACCCTTTTCACTCTCTTCTT+TGG - contig142end:48761-48780 None:intergenic 40.0%
! AGAGCCATATGAAGAGTATG+AGG + contig142end:48792-48811 MsG0080047910.01.T01:CDS 40.0%
! ATTCCTTCAGCATTGAATCC+AGG - contig142end:50376-50395 None:intergenic 40.0%
! CTGTGTAGATTTTGCTGAAG+TGG - contig142end:48422-48441 None:intergenic 40.0%
! GTCCCACATTGGTTAGAATA+TGG + contig142end:50978-50997 MsG0080047910.01.T01:intron 40.0%
! TAAAGCATCATTTAGGGGAG+GGG + contig142end:51519-51538 MsG0080047910.01.T01:intron 40.0%
! TTTTGACATTAGAGCGGAAG+GGG + contig142end:51489-51508 MsG0080047910.01.T01:intron 40.0%
!! CAATAATGGATCGAATTCCG+GGG - contig142end:51939-51958 None:intergenic 40.0%
!! CGGTTTTGGCAAAAGTGTAT+TGG - contig142end:48692-48711 None:intergenic 40.0%
!! CTTGAAGAAGCTCTGAATTC+TGG + contig142end:51779-51798 MsG0080047910.01.T01:CDS 40.0%
!! GCAAACATTTTAGCCGACTA+AGG + contig142end:52082-52101 MsG0080047910.01.T01:three_prime_UTR 40.0%
!! GGTTTTGCTTGGAGTTGATT+TGG - contig142end:48615-48634 None:intergenic 40.0%
!!! AACTTCTGCAGTGCTGTTTT+TGG + contig142end:49353-49372 MsG0080047910.01.T01:intron 40.0%
!!! ACTTCTGCAGTGCTGTTTTT+GGG + contig142end:49354-49373 MsG0080047910.01.T01:intron 40.0%
!!! CCCCTTGAACCATCATTTTT+TGG + contig142end:51326-51345 MsG0080047910.01.T01:intron 40.0%
AAAGCCATGTTCCATCACCT+TGG - contig142end:51087-51106 None:intergenic 45.0%
AGCGACTAGACTAGCATTTG+AGG - contig142end:49518-49537 None:intergenic 45.0%
AGGAGATCATTAGAGCTGAG+AGG + contig142end:49620-49639 MsG0080047910.01.T01:CDS 45.0%
ATTAGAGCTGAGAGGAACTC+TGG + contig142end:49628-49647 MsG0080047910.01.T01:CDS 45.0%
ATTGATGCTATTGCACCTGG+TGG + contig142end:48874-48893 MsG0080047910.01.T01:CDS 45.0%
ATTTGGCCAGCTGCTGAATA+TGG + contig142end:49383-49402 MsG0080047910.01.T01:CDS 45.0%
CACGGAGAAATCAAATGTGG+TGG - contig142end:52129-52148 None:intergenic 45.0%
CAGGAAAAGAGTGAACGGTA+AGG - contig142end:50357-50376 None:intergenic 45.0%
GAAGAGAGTGAAAAGGGTGA+AGG + contig142end:48763-48782 MsG0080047910.01.T01:CDS 45.0%
GAGTGAACGGTAAGGATATC+AGG - contig142end:50349-50368 None:intergenic 45.0%
GCGACTAGACTAGCATTTGA+GGG - contig142end:49517-49536 None:intergenic 45.0%
GCGCTTCACTACTTCAACAT+TGG + contig142end:50548-50567 MsG0080047910.01.T01:CDS 45.0%
! CTTACCGTTCACTCTTTTCC+TGG + contig142end:50355-50374 MsG0080047910.01.T01:intron 45.0%
! GCAATGAAAGTGCAGAGTAG+TGG - contig142end:48579-48598 None:intergenic 45.0%
! GCCAAAACCGTTCCTTTTTG+TGG + contig142end:48702-48721 MsG0080047910.01.T01:CDS 45.0%
! GGTCTGCTCTTAACTTGGAA+CGG - contig142end:51152-51171 None:intergenic 45.0%
! GTCTGCTCTTAACTTGGAAC+GGG - contig142end:51151-51170 None:intergenic 45.0%
! GTGATAAAGTACTTGCCACC+AGG + contig142end:48929-48948 MsG0080047910.01.T01:CDS 45.0%
!! AAGGTGATGGAACATGGCTT+TGG + contig142end:51086-51105 MsG0080047910.01.T01:intron 45.0%
!! ATGGCTTTGGCTTAACAGGT+TGG + contig142end:51099-51118 MsG0080047910.01.T01:intron 45.0%
!! GAACATGGCTTTGGCTTAAC+AGG + contig142end:51095-51114 MsG0080047910.01.T01:intron 45.0%
!! TGGCTTTGGCTTAACAGGTT+GGG + contig142end:51100-51119 MsG0080047910.01.T01:intron 45.0%
!! AAAAAATATCTTATAAAAAA+GGG - contig142end:49736-49755 None:intergenic 5.0%
!! AAATAGAAAATTTAAAAAAT+TGG + contig142end:51562-51581 MsG0080047910.01.T01:intron 5.0%
AAGGCTGGTGTCTTCACTGT+TGG + contig142end:48907-48926 MsG0080047910.01.T01:CDS 50.0%
ACACCTCCTACTCCTAACAG+TGG + contig142end:51253-51272 MsG0080047910.01.T01:intron 50.0%
ATCCCTCCACTGTTAGGAGT+AGG - contig142end:51262-51281 None:intergenic 50.0%
CAAGTTAAGAGCAGACCCGT+GGG + contig142end:51155-51174 MsG0080047910.01.T01:CDS 50.0%
CTCCTACTCCTAACAGTGGA+GGG + contig142end:51257-51276 MsG0080047910.01.T01:intron 50.0%
GCCCTTAAGTTAGCAAGGTC+AGG - contig142end:51914-51933 None:intergenic 50.0%
GGGATGCCCTTAAGTTAGCA+AGG - contig142end:51919-51938 None:intergenic 50.0%
GTCCTTCCATATTCAGCAGC+TGG - contig142end:49392-49411 None:intergenic 50.0%
TCTATGTCTACCACCACCAG+TGG + contig142end:48553-48572 MsG0080047910.01.T01:CDS 50.0%
TGAAGCTTCTTTCAGGGGAG+CGG + contig142end:51416-51435 MsG0080047910.01.T01:intron 50.0%
TTGTGGTAAGCCATGCTCCA+AGG + contig142end:48460-48479 MsG0080047910.01.T01:five_prime_UTR 50.0%
! ACCTGGTGGATCAGCTGATA+AGG + contig142end:48888-48907 MsG0080047910.01.T01:CDS 50.0%
! ACTGCTGCTTCATCAGGTTC+TGG - contig142end:50450-50469 None:intergenic 50.0%
! TTTGGCTTAACAGGTTGGGC+TGG + contig142end:51104-51123 MsG0080047910.01.T01:intron 50.0%
!! TGCTAACTTAAGGGCATCCC+CGG + contig142end:51919-51938 MsG0080047910.01.T01:CDS 50.0%
AAGTGCAGAGTAGTGGCCAC+TGG - contig142end:48572-48591 None:intergenic 55.0%
ATGCCTTCGCTCAAGTCCCA+CGG - contig142end:51174-51193 None:intergenic 55.0%
CCAAGTTAAGAGCAGACCCG+TGG + contig142end:51154-51173 MsG0080047910.01.T01:CDS 55.0%
CCACGGGTCTGCTCTTAACT+TGG - contig142end:51157-51176 None:intergenic 55.0%
CCTAACAGTGGAGGGATCAC+AGG + contig142end:51265-51284 MsG0080047910.01.T01:intron 55.0%
CCTCCACTGTTAGGAGTAGG+AGG - contig142end:51259-51278 None:intergenic 55.0%
CCTCCTACTCCTAACAGTGG+AGG + contig142end:51256-51275 MsG0080047910.01.T01:intron 55.0%
CCTGTGATCCCTCCACTGTT+AGG - contig142end:51268-51287 None:intergenic 55.0%
CCTGTGGGTCTTAGACAGGA+GGG + contig142end:51198-51217 MsG0080047910.01.T01:CDS 55.0%
GAGTCCTGTGGGTCTTAGAC+AGG + contig142end:51194-51213 MsG0080047910.01.T01:CDS 55.0%
GCCTTATCAGCTGATCCACC+AGG - contig142end:48892-48911 None:intergenic 55.0%
GCTCACGGATCCATGAACCA+TGG + contig142end:49552-49571 MsG0080047910.01.T01:intron 55.0%
GGCCAGCTGCTGAATATGGA+AGG + contig142end:49387-49406 MsG0080047910.01.T01:CDS 55.0%
GGGTCTTAGACAGGAGGGTA+TGG + contig142end:51203-51222 MsG0080047910.01.T01:CDS 55.0%
GGTGGATCAGCTGATAAGGC+TGG + contig142end:48892-48911 MsG0080047910.01.T01:CDS 55.0%
TCCTGTGGGTCTTAGACAGG+AGG + contig142end:51197-51216 MsG0080047910.01.T01:CDS 55.0%
TTCAAGGGGCTAGACTCACC+AGG - contig142end:51315-51334 None:intergenic 55.0%
! ACTCACCAGGTGTTGTGGAC+TGG - contig142end:51302-51321 None:intergenic 55.0%
! AGCGAAGGCATGAGTCCTGT+GGG + contig142end:51183-51202 MsG0080047910.01.T01:CDS 55.0%
! CTTGCGACTGCTGCTTCATC+AGG - contig142end:50456-50475 None:intergenic 55.0%
! GCTAGACTCACCAGGTGTTG+TGG - contig142end:51307-51326 None:intergenic 55.0%
! GCTCTTAACTTGGAACGGGC+AGG - contig142end:51147-51166 None:intergenic 55.0%
!! GGCACCAAGGTGATGGAACA+TGG + contig142end:51080-51099 MsG0080047910.01.T01:intron 55.0%
AGAGTAGTGGCCACTGGTGG+TGG - contig142end:48566-48585 None:intergenic 60.0%
CACCACCAGTCCACAACACC+TGG + contig142end:51294-51313 MsG0080047910.01.T01:intron 60.0%
GCTCGGCGACAATACCAGCA+TGG - contig142end:51030-51049 None:intergenic 60.0%
GCTGGTATTGTCGCCGAGCT+GGG + contig142end:51031-51050 MsG0080047910.01.T01:intron 60.0%
TGCAGAGTAGTGGCCACTGG+TGG - contig142end:48569-48588 None:intergenic 60.0%
TGCCTTCGCTCAAGTCCCAC+GGG - contig142end:51173-51192 None:intergenic 60.0%
TGCTGGTATTGTCGCCGAGC+TGG + contig142end:51030-51049 MsG0080047910.01.T01:intron 60.0%
! AGACAGGAGGGTATGGCGTG+AGG + contig142end:51210-51229 MsG0080047910.01.T01:intron 60.0%
! CCCTCCTGTCTAAGACCCAC+AGG - contig142end:51201-51220 None:intergenic 60.0%
! GAGCGAAGGCATGAGTCCTG+TGG + contig142end:51182-51201 MsG0080047910.01.T01:CDS 60.0%
! GGCTTAACAGGTTGGGCTGG+TGG + contig142end:51107-51126 MsG0080047910.01.T01:intron 60.0%
!! AAGTGGGGGCACCAAGGTGA+TGG + contig142end:51073-51092 MsG0080047910.01.T01:intron 60.0%
!! ATCACCTTGGTGCCCCCACT+TGG - contig142end:51074-51093 None:intergenic 60.0%
!! CACCAGGTGTTGTGGACTGG+TGG - contig142end:51299-51318 None:intergenic 60.0%
!! GGTGTTGTGGACTGGTGGTG+CGG - contig142end:51294-51313 None:intergenic 60.0%
!! TCACCTTGGTGCCCCCACTT+GGG - contig142end:51073-51092 None:intergenic 60.0%
CAAGCCGGCGTTACCCAGCT+CGG - contig142end:51047-51066 None:intergenic 65.0%
CCCCCACTTGGGTCACAAGC+CGG - contig142end:51062-51081 None:intergenic 65.0%
GACCCGTGGGACTTGAGCGA+AGG + contig142end:51168-51187 MsG0080047910.01.T01:CDS 65.0%
TTGGAACGGGCAGGCCAGCA+TGG - contig142end:51138-51157 None:intergenic 65.0%
! AGGAGGGTATGGCGTGAGGC+TGG + contig142end:51214-51233 MsG0080047910.01.T01:intron 65.0%
! CCGGCTTGTGACCCAAGTGG+GGG + contig142end:51059-51078 MsG0080047910.01.T01:intron 65.0%
!! ACGCCGGCTTGTGACCCAAG+TGG + contig142end:51056-51075 MsG0080047910.01.T01:intron 65.0%
!! CGCCGGCTTGTGACCCAAGT+GGG + contig142end:51057-51076 MsG0080047910.01.T01:intron 65.0%
!! GCCGGCTTGTGACCCAAGTG+GGG + contig142end:51058-51077 MsG0080047910.01.T01:intron 65.0%
!! GTTGTGGACTGGTGGTGCGG+TGG - contig142end:51291-51310 None:intergenic 65.0%
!! TGACCCAAGTGGGGGCACCA+AGG + contig142end:51067-51086 MsG0080047910.01.T01:intron 65.0%
GGCTGGTGGCTGCACCATGC+TGG + contig142end:51121-51140 MsG0080047910.01.T01:CDS 70.0%
GTCGCCGAGCTGGGTAACGC+CGG + contig142end:51040-51059 MsG0080047910.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
contig142end gene 48415 52271 48415 ID=MsG0080047910.01;Name=MsG0080047910.01
contig142end mRNA 48415 52271 48415 ID=MsG0080047910.01.T01;Parent=MsG0080047910.01;Name=MsG0080047910.01.T01;_AED=0.48;_eAED=0.54;_QI=129|0.71|0.62|1|0.71|0.62|8|232|398
contig142end exon 51896 52271 51896 ID=MsG0080047910.01.T01:exon:20087;Parent=MsG0080047910.01.T01
contig142end exon 51739 51817 51739 ID=MsG0080047910.01.T01:exon:20086;Parent=MsG0080047910.01.T01
contig142end exon 51117 51226 51117 ID=MsG0080047910.01.T01:exon:20085;Parent=MsG0080047910.01.T01
contig142end exon 50392 50569 50392 ID=MsG0080047910.01.T01:exon:20084;Parent=MsG0080047910.01.T01
contig142end exon 49809 49885 49809 ID=MsG0080047910.01.T01:exon:20083;Parent=MsG0080047910.01.T01
contig142end exon 49587 49681 49587 ID=MsG0080047910.01.T01:exon:20082;Parent=MsG0080047910.01.T01
contig142end exon 49364 49470 49364 ID=MsG0080047910.01.T01:exon:20081;Parent=MsG0080047910.01.T01
contig142end exon 48415 48950 48415 ID=MsG0080047910.01.T01:exon:20080;Parent=MsG0080047910.01.T01
contig142end five_prime_UTR 48415 48543 48415 ID=MsG0080047910.01.T01:five_prime_utr;Parent=MsG0080047910.01.T01
contig142end CDS 48544 48950 48544 ID=MsG0080047910.01.T01:cds;Parent=MsG0080047910.01.T01
contig142end CDS 49364 49470 49364 ID=MsG0080047910.01.T01:cds;Parent=MsG0080047910.01.T01
contig142end CDS 49587 49681 49587 ID=MsG0080047910.01.T01:cds;Parent=MsG0080047910.01.T01
contig142end CDS 49809 49885 49809 ID=MsG0080047910.01.T01:cds;Parent=MsG0080047910.01.T01
contig142end CDS 50392 50569 50392 ID=MsG0080047910.01.T01:cds;Parent=MsG0080047910.01.T01
contig142end CDS 51117 51226 51117 ID=MsG0080047910.01.T01:cds;Parent=MsG0080047910.01.T01
contig142end CDS 51739 51817 51739 ID=MsG0080047910.01.T01:cds;Parent=MsG0080047910.01.T01
contig142end CDS 51896 52039 51896 ID=MsG0080047910.01.T01:cds;Parent=MsG0080047910.01.T01
contig142end three_prime_UTR 52040 52271 52040 ID=MsG0080047910.01.T01:three_prime_utr;Parent=MsG0080047910.01.T01
Gene Sequence

>MsG0080047910.01.T01

ATGTCATTATCTATGTCTACCACCACCAGTGGCCACTACTCTGCACTTTCATTGCCAACAAGAACAACCCAAATCAACTCCAAGCAAAACCCAACTCATTATTTTCCCATTACCAAGTTGATTTCTTCCAAAAACCACTCATTTTCCAATACACTTTTGCCAAAACCGTTCCTTTTTGTGGTTAAAGCTTCATCTGAAGTGGGTTCAGATTCATCCAAAGAAGAGAGTGAAAAGGGTGAAGGAGAAAAAGAGCCATATGAAGAGTATGAGGTAGAGATTGATCAACCTTATGGTATCAAATTTGTAAAAGGAAGAGATGGTGGAACTTACATTGATGCTATTGCACCTGGTGGATCAGCTGATAAGGCTGGTGTCTTCACTGTTGGTGATAAAGTACTTGCCACCAGTGCTGTTTTTGGGACTGAAATTTGGCCAGCTGCTGAATATGGAAGGACAATGTACACAATTCGCCAAAGAATTGGACCGTTACTCATGAGAATGCAGAAGAGATATGGAAAGATAGAAACTGGTGGTGATTTAACTGAAAAGGAGATCATTAGAGCTGAGAGGAACTCTGGTGTAGTCAGTAACAAATTGAGGGAAATTCAAATGCAAAACTACCTAAGGAAAAAAGAAGTGAAAGAGGGTCGGGAAAATGATTTGAGAGAAGGCTTATTACTATACAGGAATGCTAAATATGAGGAAGCACTAGAGAAATTTGAGTCTGTTCTGGGATCAAAGCCAGAACCTGATGAAGCAGCAGTCGCAAGCTATAACGTTGCTTGTTGTTACTCTAAGCTAAACCAGGTATATTTTTGTCCAATTTACAGATTATATGTGCTGCGCTTCACTACTTCAACATTGGTTGGGCTGGTGGCTGCACCATGCTGGCCTGCCCGTTCCAAGTTAAGAGCAGACCCGTGGGACTTGAGCGAAGGCATGAGTCCTGTGGGTCTTAGACAGGAGGGTATGGCTTATAAATTTATCAAACAGATTCAAGCTGCACTTTCGACACTTGAAGAAGCTCTGAATTCTGGTTTTGAAGACTTCAAGAGAATCAGAACTGATCCTGACCTTGCTAACTTAAGGGCATCCCCGGAATTCGATCCATTATTGAAAAGATTTGATGAATCATTTATCAATGAGAGCGCCATCAATGCCATCAAATCAATATTTGGAATATTTGATAAGAAATAA

Protein sequence

>MsG0080047910.01.T01

MSLSMSTTTSGHYSALSLPTRTTQINSKQNPTHYFPITKLISSKNHSFSNTLLPKPFLFVVKASSEVGSDSSKEESEKGEGEKEPYEEYEVEIDQPYGIKFVKGRDGGTYIDAIAPGGSADKAGVFTVGDKVLATSAVFGTEIWPAAEYGRTMYTIRQRIGPLLMRMQKRYGKIETGGDLTEKEIIRAERNSGVVSNKLREIQMQNYLRKKEVKEGRENDLREGLLLYRNAKYEEALEKFESVLGSKPEPDEAAVASYNVACCYSKLNQVYFCPIYRLYVLRFTTSTLVGLVAAPCWPARSKLRADPWDLSEGMSPVGLRQEGMAYKFIKQIQAALSTLEEALNSGFEDFKRIRTDPDLANLRASPEFDPLLKRFDESFINESAINAIKSIFGIFDKK*