AlfalfaGEDB | MsG0180001536.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001536.01

KEGG: K15402
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001536.01.T01	XP_013466880.1	77.612	536	114	2	1	536	20	549	0	824

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001536.01.T01	Q9FMY1	61.959	531	193	4	6	535	23	545	0	668

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001536.01.T01	A0A072VH53	77.612	536	114	2	1	536	20	549	0.0	824

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180001536.01	MsG0780038853.01	PPI
MsG0180001536.01	MsG0480022459.01	PPI
MsG0180001536.01	MsG0280010239.01	PPI
MsG0180001536.01	MsG0880046270.01	PPI
MsG0180001536.01	MsG0480022411.01	PPI
MsG0180004449.01	MsG0180001536.01	PPI
MsG0680033602.01	MsG0180001536.01	PPI
MsG0880041871.01	MsG0180001536.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001536.01.T01	MTR_1g037560	77.612	536	114	2	1	536	20	549	0.0	824
MsG0180001536.01.T01	MTR_1g037550	78.996	538	107	3	1	536	20	553	0.0	823
MsG0180001536.01.T01	MTR_4g075110	67.532	539	165	4	1	536	24	555	0.0	731
MsG0180001536.01.T01	MTR_7g406990	78.218	404	78	4	1	402	1	396	0.0	616
MsG0180001536.01.T01	MTR_7g406990	47.706	109	39	3	428	536	350	440	1.09e-16	83.2
MsG0180001536.01.T01	MTR_8g030590	42.330	515	276	10	24	530	9	510	2.89e-131	395
MsG0180001536.01.T01	MTR_7g033570	40.039	512	284	7	21	531	6	495	6.87e-129	387
MsG0180001536.01.T01	MTR_7g033580	40.039	512	284	6	21	531	6	495	2.50e-127	384
MsG0180001536.01.T01	MTR_8g098435	41.473	516	274	11	24	530	9	505	2.54e-126	382
MsG0180001536.01.T01	MTR_8g088470	38.507	509	291	6	24	531	5	492	1.36e-125	379

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001536.01.T01	AT5G23190	61.959	531	193	4	6	535	23	545	0.0	668
MsG0180001536.01.T01	AT5G08250	60.409	538	195	7	3	535	21	545	0.0	655
MsG0180001536.01.T01	AT5G08250	61.866	493	170	7	48	535	4	483	0.0	617
MsG0180001536.01.T01	AT1G24540	42.185	531	285	8	8	530	4	520	2.08e-145	431
MsG0180001536.01.T01	AT1G13140	40.691	521	284	10	21	531	20	525	5.08e-135	405
MsG0180001536.01.T01	AT3G26125	41.532	496	269	8	47	531	48	533	1.27e-133	401
MsG0180001536.01.T01	AT1G63710	42.940	517	268	14	24	530	8	507	5.04e-130	391
MsG0180001536.01.T01	AT4G00360	40.257	544	296	14	18	550	2	527	1.03e-127	387
MsG0180001536.01.T01	AT1G01600	41.006	517	284	10	24	530	8	513	2.35e-127	385
MsG0180001536.01.T01	AT1G13140	39.652	517	269	10	21	531	20	499	8.12e-127	383

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Find 91 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGCTTAGGAACAAT+AGG	0.317508	1:+22900900	None:intergenic
AAATATTACAAGAGATTTGC+AGG	0.337927	1:-22902181	MsG0180001536.01.T01:CDS
AAATGAAGTTGTAAACAACC+AGG	0.662400	1:+22902605	None:intergenic
AAATGCAGTGAATTTGTAGG+CGG	0.621756	1:+22901031	None:intergenic
AAATTCACTGCATTTAATGG+AGG	0.612469	1:-22901023	MsG0180001536.01.T01:CDS
AAATTCATCAGGGTATGCTA+AGG	0.608747	1:+22899122	None:intergenic
AAATTGAAATTAATAAACCA+TGG	0.658280	1:+22902971	None:intergenic
AACATCATGGCATAACCAAT+TGG	0.472322	1:-22903102	MsG0180001536.01.T01:CDS
AACCGTGTTTATGAGGCTTA+AGG	0.382585	1:-22902342	MsG0180001536.01.T01:CDS
AAGAAAGCTTAGGAACAATA+GGG	0.544624	1:+22900901	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGCTTAGGAACAAT+AGG	+	Chr1:22901455-22901474	None:intergenic	30.0%
AAAGAAGCAAATGTTAGTGT+TGG	-	Chr1:22902954-22902973	MsG0180001536.01.T01:CDS	30.0%
AAATGAAGTTGTAAACAACC+AGG	+	Chr1:22899750-22899769	None:intergenic	30.0%
AAATTCACTGCATTTAATGG+AGG	-	Chr1:22901329-22901348	MsG0180001536.01.T01:intron	30.0%
AAATTGAATTGAGAAGACAC+GGG	-	Chr1:22903015-22903034	MsG0180001536.01.T01:CDS	30.0%
AAGAAAGCTTAGGAACAATA+GGG	+	Chr1:22901454-22901473	None:intergenic	30.0%
AATCTATTCAATGGGAAGAA+TGG	-	Chr1:22901221-22901240	MsG0180001536.01.T01:intron	30.0%
AGATGATGATAAGCGAAAAT+CGG	-	Chr1:22899980-22899999	MsG0180001536.01.T01:intron	30.0%
ATCCCTGAAAAATAAGCTAT+AGG	+	Chr1:22902393-22902412	None:intergenic	30.0%
ATTACCTCTTTATGATCCAA+AGG	+	Chr1:22900329-22900348	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	22899129	22903245	22899129	ID=MsG0180001536.01;Name=MsG0180001536.01
Chr1	mRNA	22899129	22903245	22899129	ID=MsG0180001536.01.T01;Parent=MsG0180001536.01;Name=MsG0180001536.01.T01;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|0.75\|1\|1\|4\|0\|598
Chr1	exon	22902031	22903245	22902031	ID=MsG0180001536.01.T01:exon:72;Parent=MsG0180001536.01.T01
Chr1	exon	22901770	22901804	22901770	ID=MsG0180001536.01.T01:exon:71;Parent=MsG0180001536.01.T01
Chr1	exon	22900828	22901193	22900828	ID=MsG0180001536.01.T01:exon:70;Parent=MsG0180001536.01.T01
Chr1	exon	22899129	22899309	22899129	ID=MsG0180001536.01.T01:exon:69;Parent=MsG0180001536.01.T01
Chr1	CDS	22902031	22903245	22902031	ID=MsG0180001536.01.T01:cds;Parent=MsG0180001536.01.T01
Chr1	CDS	22901770	22901804	22901770	ID=MsG0180001536.01.T01:cds;Parent=MsG0180001536.01.T01
Chr1	CDS	22900828	22901193	22900828	ID=MsG0180001536.01.T01:cds;Parent=MsG0180001536.01.T01
Chr1	CDS	22899129	22899309	22899129	ID=MsG0180001536.01.T01:cds;Parent=MsG0180001536.01.T01

Gene Sequence

>MsG0180001536.01.T01

ATGGCTGCAGCCAAAGAAAACTTGTTTTCTCAAATCATCTTCCTCTTGAAAAATATTCAAATCACTGAGATTATTATTGCAGTCATTGTTTTCATATTAATCTATTCTTTAAGATCAAAAAAACATCATGGCATAACCAATTGGCCTATTCTTGGAATGCTACCTTCCTTAATCATAGGACTCAAAACCAACTTTTATGAATGGATCACCAATATGCTCAAACATCAAAATGGAACCTTTATTTTCAAAGGACCATGGTTTATTAATTTCAATTTCATCATAACCTCAAAACCTCAAAATATAGAACATCTTCTCAAAACAAAGTTAACTATTTACCCTAAAGGAAACTTCTTCAAAGACACACTTTTTGATTTACTTGGAGATGGTATTTTCAATGCTGATAATGAAACATGGCTGAAACAAAGGAAAATCGCGAGTATCGAGTTTCATTCAACAAAGTTTAGGAAATTAACAATTGAGTCATTGTTCGAGCTTGTGAATAATAGGCTCATACCTGTGTTAGAATCTTCTGTAAGAAAATCCGTTTCTATAGATCTTCAAGATATTTTGTTGAGACTCACTTTTGATAATGTTTGTATGATAGCTTTTGGTGTTGATCCTGGTTGTTTACAACTTCATTTACCTGAAATCCCTTTTGCTACAGCATTTGAGGATGCAACAGAAACTAGTGTAATCCGATTCCTTGCGTCGGGTTATGTATGGAAGGCTATGAGGTTTCTTAACTTAGGTATGGAAAGAAAGTTGAAGAAATCAATACAAAAAGTTGATGAATTTGCTGAGAATATTATTAGGGCAAGAAGAGAGGAAGTATCTTTGGAAAATGAAGAAGAAGATGATGATAAGCGAAAATCGGATTTGTTAACCGTGTTTATGAGGCTTAAGGATGAGAATGAAAAGTCTTATTCAGATAAGTTCTTGAGGGATATATGTGTAAATTTCATATTAGCTGGGAGAGACACTTCTTCAGTTGGTTTAAGCTGGTTTTTCTGGTTGCTTGATCAGAATCATGAAGTGGAGGAGAAAATATTACAAGAGATTTGCAGGGTTTTGAGTGAGAGGGAGGATATTAATAAGGAAGTGTTCAATGATTGTTTGAGATTCAAGCCTGAGGAGATTAAGAAGATGGATTATTTGCATGCTGCTCTTTCAGAAGCTCTTAGATTATATCCTTCTGTTCCTTTGGATCATAAAGAGAACTATTTTACAATGTCTAAATGTGAATTTCATCGATGGAACAAAACTACAAAAAGGAACAAAAGTGATATATGCAATCTATTCAATGGGAAGAATGGAAAGCATATGGGGAAAGATTGCTTGGAGTTCAAGCCAGAAAGATGGTTAACTAAAGATGGTCATTTCATGAGCGAATCCGCCTACAAATTCACTGCATTTAATGGAGGACCAAGGTTGTGTTTAGGCAAAGATTTTGCATACTATCAAATGAAATATGTTGCAGCTAGCATCATATTTTGTTACCATGTTAAGGTTGTTGAGAATCACCCTATTGTTCCTAAGCTTTCTTTGACATTTTACATGAAACATGGATTGAAAGTTACCCTTCATAGACGTAGTGATGTAGAAATTCATAATTTGAAGTTGCGTGATTATGTAAAGAAGGAAACAAATGAATGGTCGTTGAGTATTCTTAAAGAAGTTCACAACCACATGATGGAGAAAAAGTTAGAAGATCACCTTCTTGAGTGTCGATTAATTAAGAAAGACAAGAAGGTTGTTGATGATCTGACAAAGAGTTTGGTGCACCTTAGCATACCCTGA

Protein sequence

>MsG0180001536.01.T01

MAAAKENLFSQIIFLLKNIQITEIIIAVIVFILIYSLRSKKHHGITNWPILGMLPSLIIGLKTNFYEWITNMLKHQNGTFIFKGPWFINFNFIITSKPQNIEHLLKTKLTIYPKGNFFKDTLFDLLGDGIFNADNETWLKQRKIASIEFHSTKFRKLTIESLFELVNNRLIPVLESSVRKSVSIDLQDILLRLTFDNVCMIAFGVDPGCLQLHLPEIPFATAFEDATETSVIRFLASGYVWKAMRFLNLGMERKLKKSIQKVDEFAENIIRARREEVSLENEEEDDDKRKSDLLTVFMRLKDENEKSYSDKFLRDICVNFILAGRDTSSVGLSWFFWLLDQNHEVEEKILQEICRVLSEREDINKEVFNDCLRFKPEEIKKMDYLHAALSEALRLYPSVPLDHKENYFTMSKCEFHRWNKTTKRNKSDICNLFNGKNGKHMGKDCLEFKPERWLTKDGHFMSESAYKFTAFNGGPRLCLGKDFAYYQMKYVAASIIFCYHVKVVENHPIVPKLSLTFYMKHGLKVTLHRRSDVEIHNLKLRDYVKKETNEWSLSILKEVHNHMMEKKLEDHLLECRLIKKDKKVVDDLTKSLVHLSIP*