AlfalfaGEDB | MsG0480022459.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022459.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022459.01.T01	XP_013457073.1	92.925	523	35	2	1	523	1	521	0	995

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022459.01.T01	A0A068Q6L2	59.722	504	186	6	20	516	21	514	0	603

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022459.01.T01	A0A072UMT0	92.925	523	35	2	1	523	1	521	0.0	995

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0480022459.01	-0.819936	8.940356e-53	6.976373e-50
MsG0080047967.01	MsG0480022459.01	0.859481	4.016024e-63	1.062191e-59
MsG0080048059.01	MsG0480022459.01	0.883251	5.256010e-71	3.306816e-67
MsG0080048560.01	MsG0480022459.01	0.833995	3.871077e-56	4.533382e-53
MsG0080048633.01	MsG0480022459.01	-0.803263	3.789357e-49	1.895684e-46
MsG0080048652.01	MsG0480022459.01	-0.802285	6.031924e-49	2.943368e-46
MsG0080048690.01	MsG0480022459.01	0.812842	3.459161e-51	2.222749e-48
MsG0080048694.01	MsG0480022459.01	0.879314	1.378623e-69	7.440251e-66
MsG0080048695.01	MsG0480022459.01	0.879673	1.027984e-69	5.623384e-66
MsG0080048697.01	MsG0480022459.01	0.848385	6.340533e-60	1.161543e-56

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PPI

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Gene1	Gene2	Type
MsG0180001531.01	MsG0480022459.01	PPI
MsG0180001536.01	MsG0480022459.01	PPI
MsG0180001537.01	MsG0480022459.01	PPI
MsG0280010239.01	MsG0480022459.01	PPI
MsG0480022459.01	MsG0480022411.01	PPI
MsG0480022459.01	MsG0780038853.01	PPI
MsG0480022459.01	MsG0280007779.01	PPI
MsG0480022459.01	MsG0280007778.01	PPI
MsG0480022459.01	MsG0880046270.01	PPI
MsG0480022459.01	MsG0180001532.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022459.01.T01	MTR_4g089030	92.925	523	35	2	1	523	1	521	0.0	995
MsG0480022459.01.T01	MTR_4g089025	80.645	527	93	5	1	523	1	522	0.0	870
MsG0480022459.01.T01	MTR_4g089020	80.357	504	91	3	19	522	1	496	0.0	840
MsG0480022459.01.T01	MTR_4g089055	78.178	527	103	6	1	523	1	519	0.0	828
MsG0480022459.01.T01	MTR_4g104610	60.396	505	192	5	20	521	1	500	0.0	640
MsG0480022459.01.T01	MTR_0022s0290	59.922	514	198	7	13	519	5	517	0.0	629
MsG0480022459.01.T01	MTR_4g104550	60.986	487	181	5	36	521	17	495	0.0	619
MsG0480022459.01.T01	MTR_4g104540	61.187	438	162	3	83	520	1	430	0.0	563
MsG0480022459.01.T01	MTR_3g076530	48.111	503	244	5	21	519	14	503	6.22e-169	488
MsG0480022459.01.T01	MTR_4g104660	43.874	506	276	5	10	512	7	507	7.30e-151	442

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022459.01.T01	AT3G48270	51.471	476	215	4	43	517	26	486	0.0	528
MsG0480022459.01.T01	AT3G48280	50.202	494	228	5	27	519	12	488	0.0	522
MsG0480022459.01.T01	AT3G48290	51.042	480	217	5	40	517	25	488	1.82e-177	508
MsG0480022459.01.T01	AT3G48300	52.340	470	204	6	49	517	30	480	1.44e-176	506
MsG0480022459.01.T01	AT3G48300	52.340	470	204	6	49	517	32	482	1.55e-176	506
MsG0480022459.01.T01	AT3G48310	50.104	479	223	5	40	517	24	487	3.03e-176	506
MsG0480022459.01.T01	AT3G48290	48.419	506	217	6	40	517	25	514	1.51e-171	494
MsG0480022459.01.T01	AT3G48320	48.310	503	241	5	16	517	3	487	4.32e-168	485
MsG0480022459.01.T01	AT4G13310	48.312	474	233	4	47	517	31	495	7.19e-163	472
MsG0480022459.01.T01	AT5G24950	46.778	481	237	6	40	514	24	491	6.47e-158	459

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Find 111 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAGAAATGAAGAT+TGG	0.467092	4:-72777680	None:intergenic
AAAAGATACCGTGAAGGAAG+AGG	0.525851	4:+72778223	MsG0480022459.01.T01:CDS
AAAATAGTGAAGAAAAGCAT+AGG	0.523425	4:-72777656	None:intergenic
AAAGATACCGTGAAGGAAGA+GGG	0.613236	4:+72778224	MsG0480022459.01.T01:CDS
AAATAGTGAAGAAAAGCATA+GGG	0.572409	4:-72777655	None:intergenic
AAATCTTGGAGTGATCTGTG+AGG	0.718248	4:-72777806	None:intergenic
AACAGTTCAATAGATTTCAA+AGG	0.530471	4:+72779334	MsG0480022459.01.T01:CDS
AAGAATGATGGATCATATTA+AGG	0.275873	4:+72778111	MsG0480022459.01.T01:CDS
AAGAGAACTTGGCAGAAAGG+TGG	0.637502	4:-72777609	None:intergenic
AAGAGGGATGAAATTTCAGG+AGG	0.661171	4:+72778240	MsG0480022459.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGTAATAGTCAATGCTT+GGG	+	Chr4:72779249-72779268	MsG0480022459.01.T01:CDS	30.0%
ACCTTGTTCATCAATTTGAT+TGG	+	Chr4:72779449-72779468	MsG0480022459.01.T01:CDS	30.0%
ATATAGGAGACTATATACCT+TGG	+	Chr4:72778299-72778318	MsG0480022459.01.T01:CDS	30.0%
ATTTCATGTGAAAGAGAACT+TGG	-	Chr4:72777623-72777642	None:intergenic	30.0%
CATATTTGTGAGCTAAATCT+TGG	-	Chr4:72777823-72777842	None:intergenic	30.0%
GTACAGTATTATTATTTGGC+TGG	+	Chr4:72778589-72778608	MsG0480022459.01.T01:intron	30.0%
TAATGATATAGTATGTAGGG+TGG	+	Chr4:72778192-72778211	MsG0480022459.01.T01:CDS	30.0%
TCATGTAACTGAAGAAGATT+TGG	+	Chr4:72779099-72779118	MsG0480022459.01.T01:CDS	30.0%
TCCAATCAAATTGATGAACA+AGG	-	Chr4:72779453-72779472	None:intergenic	30.0%
TTTACTTTGTGGAATTACTG+AGG	+	Chr4:72778758-72778777	MsG0480022459.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	72777605	72779588	72777605	ID=MsG0480022459.01;Name=MsG0480022459.01
Chr4	mRNA	72777605	72779588	72777605	ID=MsG0480022459.01.T01;Parent=MsG0480022459.01;Name=MsG0480022459.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|2\|0\|523
Chr4	exon	72777605	72778558	72777605	ID=MsG0480022459.01.T01:exon:31294;Parent=MsG0480022459.01.T01
Chr4	exon	72778971	72779588	72778971	ID=MsG0480022459.01.T01:exon:31295;Parent=MsG0480022459.01.T01
Chr4	CDS	72777605	72778558	72777605	ID=MsG0480022459.01.T01:cds;Parent=MsG0480022459.01.T01
Chr4	CDS	72778971	72779588	72778971	ID=MsG0480022459.01.T01:cds;Parent=MsG0480022459.01.T01

Gene Sequence

>MsG0480022459.01.T01

ATGTCCACCTTTCTGCCAAGTTCTCTTTCACATGAAATCTTCTCTTCATTCCCTATGCTTTTCTTCACTATTTTACCAATCTTCATTTCTCTTCTTTTCATCATCAAATGGTATTCCAACAATTCTGCCACCCAAAAAAACTTACTTCCTTCACCTCCAAGATTTCCTCTACTTGGTAATCTTCATCAAATTGGTGTGTCCCCTCACAGATCACTCCAAGATTTAGCTCACAAATATGGCCCTCTAATGCTTCTTTATTTTGGGAAGGTTCCAGTTCTTGTGGTTTCCTCTGCTGATGCAGCAAGAAAAGTAATGAAAACTCATGACTTAGTCTTCTGTGATAGGCCACAACTTAAAATCTTTGATATCCTTTTATACAGTTCCAAAGATGTAGCAAGTTGTGCATATGGTGAGTATTGGAGACAAGTAAGGAGTCTCAGTGTGTTACACCTTCTAAGTAACAAAAGAGTTCGATCTTACCGACGTGTTAGAGAGGAAGAAACTTTAAGAATGATGGATCATATTAAGGAGGTTTCTTCTTCTGACTCGTCGCCCTTGAATTTAACCGAGTTGTGCTCTACAATTACTAATGATATAGTATGTAGGGTGGCTCTGGGAAAAAGATACCGTGAAGGAAGAGGGATGAAATTTCAGGAGGTGTTGTCGGAGTTTGAGGAGTTATTGGGTAGTTTATATATAGGAGACTATATACCTTGGCTTGATTGGTTGGGAAAAGTAAATGGTTTTTATAGCAGGGCAGAAAAAGTGGCCATACAATTGGATGAATTTTTTGAGGAAGTAATTGAGGAGCACATTAGTGGTGGTAGATCTAATGGAGATGTTGGTGCTGAAAGTGAAGAGCATAGTGATTTTGTGGATGTTTTGCTTTCGCTTCAAAAGACCAATGCTATGGGATTCCCAATTGATAGAACTTCAATCAAGGCTTTGATACTGGACATGTTTGCTGCAGGTACTGATACTACCTACACAGTTCTAGAATGGGCAATGACAGAACTTTTAAGAGACCAAACTGTGATGCATAAATTGCAAGATGAGGTGAGAACTGTGGTTGGTAAAAGAACTCATGTAACTGAAGAAGATTTGGTTAACATGAACTACTTGAAAGCTGTGATCAAAGAAACTCTTCGCCTCCATGCACCAGTTCCGTTGTTAGTCCCTCGAAAATCAATGGAAGATATCAAAATAAATGGCTATGACATTGCAGCTGGTACACAAGTAATAGTCAATGCTTGGGCTATTTCTAGAGATCCTTCAATTTGGGAAGAACCTCTAGAGTTTAAACCAGAAAGGTTTATGAACAGTTCAATAGATTTCAAAGGATTGGATTTTGAACTTATTCCATTTGGAGCAGGAAGGAGAGGTTGTCCTGGAGTGTTGTTTGCTGTTGCTGTGAATGAATTGGTGTTAGCAAACCTTGTTCATCAATTTGATTGGAAATTGCCTGATGGAGTTGCTGAGAAGGATTTGGACATGTCTGAAACTAATGGCCTTAGTTGCCATAGAAAATACCCTCTCCTTGCAGTAGCTACTAAATATGAGAAAAATGAATGA

Protein sequence

>MsG0480022459.01.T01

MSTFLPSSLSHEIFSSFPMLFFTILPIFISLLFIIKWYSNNSATQKNLLPSPPRFPLLGNLHQIGVSPHRSLQDLAHKYGPLMLLYFGKVPVLVVSSADAARKVMKTHDLVFCDRPQLKIFDILLYSSKDVASCAYGEYWRQVRSLSVLHLLSNKRVRSYRRVREEETLRMMDHIKEVSSSDSSPLNLTELCSTITNDIVCRVALGKRYREGRGMKFQEVLSEFEELLGSLYIGDYIPWLDWLGKVNGFYSRAEKVAIQLDEFFEEVIEEHISGGRSNGDVGAESEEHSDFVDVLLSLQKTNAMGFPIDRTSIKALILDMFAAGTDTTYTVLEWAMTELLRDQTVMHKLQDEVRTVVGKRTHVTEEDLVNMNYLKAVIKETLRLHAPVPLLVPRKSMEDIKINGYDIAAGTQVIVNAWAISRDPSIWEEPLEFKPERFMNSSIDFKGLDFELIPFGAGRRGCPGVLFAVAVNELVLANLVHQFDWKLPDGVAEKDLDMSETNGLSCHRKYPLLAVATKYEKNE*