AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001619.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001619.01.T01 MTR_1g040195 92.375 459 12 1 1 459 1 436 0.0 862
MsG0180001619.01.T01 MTR_1g040215 76.356 461 107 2 1 459 1 461 0.0 731
MsG0180001619.01.T01 MTR_1g040175 74.837 461 111 3 1 459 1 458 0.0 701
MsG0180001619.01.T01 MTR_1g040315 73.913 460 76 4 1 459 1 417 0.0 673
MsG0180001619.01.T01 MTR_1g040320 69.783 460 103 2 1 459 1 425 0.0 644
MsG0180001619.01.T01 MTR_5g076700 59.130 460 178 6 5 459 6 460 0.0 558
MsG0180001619.01.T01 MTR_7g114560 58.696 460 179 7 5 459 6 459 0.0 554
MsG0180001619.01.T01 MTR_7g114470 58.478 460 182 5 5 459 7 462 0.0 551
MsG0180001619.01.T01 MTR_7g114550 58.057 453 175 7 2 446 3 448 0.0 549
MsG0180001619.01.T01 MTR_7g114520 56.959 467 178 8 5 459 7 462 0.0 542
MsG0180001619.01.T01 MTR_1g081660 60.274 438 169 5 4 438 13 448 0.0 531
MsG0180001619.01.T01 MTR_7g114490 58.237 431 172 5 5 430 6 433 0.0 524
MsG0180001619.01.T01 MTR_0042s0190 69.697 297 88 2 165 459 1 297 6.52e-151 431
MsG0180001619.01.T01 MTR_7g114510 55.000 320 130 7 147 459 8 320 4.92e-117 346
MsG0180001619.01.T01 MTR_0042s0190 69.828 232 68 2 230 459 1 232 1.35e-114 336
MsG0180001619.01.T01 MTR_0502s0010 60.744 242 85 5 100 335 1 238 3.01e-98 295
MsG0180001619.01.T01 MTR_7g114420 52.000 300 107 7 165 459 1 268 1.73e-97 294
MsG0180001619.01.T01 MTR_3g035000 61.086 221 59 4 199 417 43 238 1.01e-81 255
MsG0180001619.01.T01 MTR_8g039950 91.473 129 11 0 1 129 1 129 7.65e-80 244
MsG0180001619.01.T01 MTR_8g096530 32.962 449 283 9 1 444 1 436 1.65e-78 251
MsG0180001619.01.T01 MTR_3g098980 33.178 428 267 9 9 430 14 428 3.97e-78 250
MsG0180001619.01.T01 MTR_0042s0230 76.190 147 35 0 1 147 1 147 8.61e-77 237
MsG0180001619.01.T01 MTR_7g027175 33.770 382 241 7 14 389 21 396 5.10e-73 237
MsG0180001619.01.T01 MTR_7g114500 57.333 150 64 0 2 151 3 152 1.79e-59 192
MsG0180001619.01.T01 MTR_1g053315 31.207 439 279 14 18 438 30 463 3.56e-57 196
MsG0180001619.01.T01 MTR_4g055170 28.918 453 297 9 3 435 6 453 2.29e-56 194
MsG0180001619.01.T01 MTR_3g112180 32.908 392 239 10 19 397 22 402 2.93e-54 188
MsG0180001619.01.T01 MTR_4g007540 31.481 432 264 16 16 430 10 426 3.00e-52 182
MsG0180001619.01.T01 MTR_3g051790 56.849 146 63 0 2 147 6 151 3.77e-52 174
MsG0180001619.01.T01 MTR_2g105330 29.508 427 276 11 17 430 11 425 1.53e-50 177
MsG0180001619.01.T01 MTR_3g071320 30.716 433 272 11 17 434 13 432 1.10e-49 175
MsG0180001619.01.T01 MTR_2g064495 29.274 427 277 11 17 430 11 425 3.57e-49 174
MsG0180001619.01.T01 MTR_8g075610 29.861 432 272 12 17 434 2 416 4.10e-49 173
MsG0180001619.01.T01 MTR_7g084940 28.440 436 291 10 5 430 12 436 2.34e-44 161
MsG0180001619.01.T01 MTR_7g110610 27.901 405 228 12 5 401 1 349 2.49e-43 157
MsG0180001619.01.T01 MTR_7g085930 28.421 475 264 18 9 432 6 455 5.09e-40 150
MsG0180001619.01.T01 MTR_7g084910 27.970 404 246 12 1 389 11 384 5.55e-40 149
MsG0180001619.01.T01 MTR_6g053810 28.851 409 255 13 56 437 63 462 5.69e-40 149
MsG0180001619.01.T01 MTR_2g015430 28.916 415 280 12 30 434 25 434 1.12e-39 148
MsG0180001619.01.T01 MTR_7g085990 27.505 469 276 17 9 432 2 451 3.57e-38 145
MsG0180001619.01.T01 MTR_4g127650 27.617 449 280 14 17 434 18 452 5.22e-38 144
MsG0180001619.01.T01 MTR_3g465990 27.692 455 282 16 16 437 17 457 3.65e-37 142
MsG0180001619.01.T01 MTR_4g097090 28.172 465 290 16 1 434 1 452 1.98e-36 140
MsG0180001619.01.T01 MTR_3g026950 26.277 411 263 10 13 390 6 409 3.13e-36 139
MsG0180001619.01.T01 MTR_3g465980 27.692 455 282 16 16 437 17 457 4.85e-36 139
MsG0180001619.01.T01 MTR_7g086000 27.069 447 268 18 17 422 12 441 1.55e-35 137
MsG0180001619.01.T01 MTR_3g465930 26.991 452 293 13 16 437 17 461 6.87e-35 135
MsG0180001619.01.T01 MTR_7g056087 26.351 444 277 14 17 432 12 433 5.36e-32 127
MsG0180001619.01.T01 MTR_3g465910 26.856 458 283 15 16 437 17 458 9.75e-32 127
MsG0180001619.01.T01 MTR_3g465880 28.571 455 285 16 16 437 17 464 5.33e-31 124
MsG0180001619.01.T01 MTR_4g013050 24.769 432 262 13 19 430 14 402 1.59e-29 119
MsG0180001619.01.T01 MTR_4g088765 66.250 80 25 1 1 78 1 80 3.52e-29 110
MsG0180001619.01.T01 MTR_3g049150 25.750 400 263 11 17 388 10 403 9.36e-29 118
MsG0180001619.01.T01 MTR_3g465950 27.273 341 220 8 16 336 17 349 4.55e-27 113
MsG0180001619.01.T01 MTR_3g101930 28.702 439 250 20 6 399 4 424 6.11e-27 113
MsG0180001619.01.T01 MTR_3g101960 29.467 319 200 12 23 327 30 337 5.18e-26 110
MsG0180001619.01.T01 MTR_4g094835 25.369 406 259 15 46 428 49 433 1.42e-25 108
MsG0180001619.01.T01 MTR_4g094842 26.106 452 278 18 8 428 9 435 3.50e-25 107
MsG0180001619.01.T01 MTR_3g101900 27.792 403 222 17 36 399 44 416 1.14e-24 106
MsG0180001619.01.T01 MTR_4g022800 26.376 436 260 20 23 428 25 429 1.63e-24 105
MsG0180001619.01.T01 MTR_5g090830 25.815 399 236 14 61 425 63 435 1.73e-24 106
MsG0180001619.01.T01 MTR_0190s0020 27.460 437 249 20 23 428 30 429 2.12e-24 105
MsG0180001619.01.T01 MTR_5g090810 25.245 408 227 14 61 425 63 435 2.57e-24 105
MsG0180001619.01.T01 MTR_4g094838 24.651 430 261 14 23 428 29 419 2.64e-24 105
MsG0180001619.01.T01 MTR_4g022290 25.628 398 244 13 23 395 31 401 2.87e-24 105
MsG0180001619.01.T01 MTR_3g102020 26.517 445 274 19 24 441 31 449 5.02e-24 104
MsG0180001619.01.T01 MTR_4g094828 25.467 428 275 16 24 428 31 437 8.89e-24 103
MsG0180001619.01.T01 MTR_7g026860 27.336 428 262 19 23 428 25 425 1.63e-23 102
MsG0180001619.01.T01 MTR_8g041770 25.114 438 274 16 14 428 22 428 2.17e-23 102
MsG0180001619.01.T01 MTR_5g090880 25.750 400 236 15 61 425 64 437 4.06e-23 102
MsG0180001619.01.T01 MTR_3g088420 27.378 431 267 18 23 435 25 427 6.57e-23 100
MsG0180001619.01.T01 MTR_3g101970 27.250 400 244 16 23 399 30 405 1.11e-22 100
MsG0180001619.01.T01 MTR_5g084870 23.469 392 257 14 15 386 9 377 1.46e-22 100
MsG0180001619.01.T01 MTR_4g094832 27.528 356 214 14 94 428 85 417 1.50e-22 100
MsG0180001619.01.T01 MTR_3g450690 24.752 404 221 14 64 423 72 436 2.93e-22 99.4
MsG0180001619.01.T01 MTR_8g079710 26.757 441 250 21 23 428 30 432 5.08e-22 98.6
MsG0180001619.01.T01 MTR_5g084850 24.173 393 252 14 15 386 9 376 5.17e-22 98.6
MsG0180001619.01.T01 MTR_3g102010 27.209 430 235 18 17 399 21 419 7.28e-22 98.2
MsG0180001619.01.T01 MTR_3g450710 25.935 401 223 15 64 423 65 432 7.63e-22 98.2
MsG0180001619.01.T01 MTR_4g022720 25.236 424 273 15 23 428 25 422 7.75e-22 97.8
MsG0180001619.01.T01 MTR_4g022670 25.116 430 272 18 23 428 25 428 1.35e-21 97.4
MsG0180001619.01.T01 MTR_3g465870 28.041 296 189 9 16 294 19 307 2.49e-21 96.3
MsG0180001619.01.T01 MTR_8g079950 22.993 461 297 15 15 448 9 438 5.80e-20 92.4
MsG0180001619.01.T01 MTR_4g022760 28.344 314 196 10 23 321 25 324 8.93e-20 91.3
MsG0180001619.01.T01 MTR_5g026320 25.815 399 250 16 24 395 35 414 8.32e-19 89.0
MsG0180001619.01.T01 MTR_8g079970 27.036 307 195 13 15 309 9 298 2.07e-18 87.8
MsG0180001619.01.T01 MTR_5g084900 21.818 330 213 11 64 386 9 300 5.83e-17 82.4
MsG0180001619.01.T01 MTR_8g079980 24.756 307 203 11 15 309 9 299 1.77e-16 81.6
MsG0180001619.01.T01 MTR_7g114417 61.538 52 19 1 89 139 29 80 1.45e-15 72.0
MsG0180001619.01.T01 MTR_8g467590 23.601 411 269 18 15 399 9 400 7.64e-15 76.6
MsG0180001619.01.T01 MTR_3g051820 48.958 96 43 4 365 459 1 91 6.92e-14 67.4
MsG0180001619.01.T01 MTR_3g102030 25.649 308 184 12 90 385 42 316 3.58e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001619.01.T01 AT5G17540 59.243 449 171 9 1 442 1 444 0.0 526
MsG0180001619.01.T01 AT3G03480 57.336 443 174 11 5 439 15 450 1.36e-169 484
MsG0180001619.01.T01 AT5G41040 32.273 440 276 10 4 434 12 438 5.19e-81 258
MsG0180001619.01.T01 AT5G41040 32.273 440 276 10 4 434 28 454 7.25e-81 258
MsG0180001619.01.T01 AT5G63560 33.183 443 270 11 1 435 1 425 3.94e-79 252
MsG0180001619.01.T01 AT3G48720 31.350 437 280 11 1 430 1 424 3.02e-74 239
MsG0180001619.01.T01 AT1G27620 29.754 447 283 12 10 444 10 437 2.67e-55 190
MsG0180001619.01.T01 AT3G62160 29.759 457 275 16 5 444 1 428 2.05e-53 185
MsG0180001619.01.T01 AT1G65450 29.605 456 285 13 1 438 12 449 8.22e-52 181
MsG0180001619.01.T01 AT2G40230 33.333 390 230 11 17 388 13 390 3.01e-51 179
MsG0180001619.01.T01 AT1G03390 29.698 431 281 14 19 434 32 455 3.26e-48 172
MsG0180001619.01.T01 AT2G19070 29.070 430 264 13 35 434 29 447 5.49e-48 171
MsG0180001619.01.T01 AT5G57840 27.727 440 276 11 17 432 11 432 3.64e-47 169
MsG0180001619.01.T01 AT1G28680 28.571 441 292 14 16 439 11 445 4.40e-47 169
MsG0180001619.01.T01 AT5G48930 29.452 438 271 14 17 434 11 430 6.92e-47 167
MsG0180001619.01.T01 AT1G28680 31.105 344 223 10 16 349 11 350 1.51e-43 158
MsG0180001619.01.T01 AT3G47170 27.105 487 278 17 3 438 6 466 4.62e-43 158
MsG0180001619.01.T01 AT5G07080 28.298 470 273 16 1 435 6 446 6.78e-41 152
MsG0180001619.01.T01 AT2G23510 28.112 466 286 17 1 437 5 450 2.69e-38 145
MsG0180001619.01.T01 AT2G25150 28.322 459 292 16 5 439 9 454 3.87e-37 142
MsG0180001619.01.T01 AT1G78990 27.569 399 251 12 62 439 65 446 4.94e-32 127
MsG0180001619.01.T01 AT1G31490 25.823 395 247 13 17 387 14 386 1.93e-29 120
MsG0180001619.01.T01 AT5G07860 27.069 447 271 15 15 435 24 441 4.12e-28 116
MsG0180001619.01.T01 AT1G65450 28.283 297 184 8 158 438 2 285 1.29e-27 112
MsG0180001619.01.T01 AT5G07870 27.093 454 262 17 15 428 24 448 3.26e-26 111
MsG0180001619.01.T01 AT5G42830 28.266 421 240 15 15 399 23 417 3.92e-26 110
MsG0180001619.01.T01 AT1G32910 26.173 405 256 15 62 439 63 451 2.68e-25 108
MsG0180001619.01.T01 AT5G07850 26.699 412 261 15 15 399 24 421 2.26e-24 105
MsG0180001619.01.T01 AT3G50270 26.877 413 234 15 23 397 30 412 5.72e-24 104
MsG0180001619.01.T01 AT4G31910 27.494 451 274 15 17 430 17 451 1.83e-23 103
MsG0180001619.01.T01 AT3G50280 26.633 398 251 17 23 397 28 407 3.54e-23 102
MsG0180001619.01.T01 AT5G67150 25.285 439 264 18 23 430 30 435 1.12e-22 100
MsG0180001619.01.T01 AT5G38130 25.628 398 253 14 23 397 48 425 1.20e-22 100
MsG0180001619.01.T01 AT1G24430 24.079 407 257 15 43 430 41 414 2.20e-22 99.8
MsG0180001619.01.T01 AT3G26040 23.232 396 261 14 15 388 9 383 5.43e-22 98.6
MsG0180001619.01.T01 AT5G23970 24.784 464 287 17 13 456 7 428 1.49e-21 97.1
MsG0180001619.01.T01 AT3G50300 26.316 361 227 13 64 397 59 407 4.22e-21 95.9
MsG0180001619.01.T01 AT1G24420 26.434 401 235 17 15 386 11 380 5.83e-21 95.5
MsG0180001619.01.T01 AT1G24420 26.434 401 235 17 15 386 11 380 5.83e-21 95.5
MsG0180001619.01.T01 AT5G16410 25.788 349 222 13 62 388 89 422 1.05e-19 92.0
MsG0180001619.01.T01 AT5G67160 27.182 401 245 17 58 435 50 426 3.02e-19 90.1
MsG0180001619.01.T01 AT5G47980 24.893 466 283 23 15 447 11 442 5.57e-18 86.3
MsG0180001619.01.T01 AT3G30280 24.222 450 283 18 6 427 3 422 2.76e-17 84.3
MsG0180001619.01.T01 AT3G50280 26.007 273 184 10 138 397 10 277 1.96e-15 77.4
MsG0180001619.01.T01 AT3G29635 23.077 390 263 14 67 431 70 447 2.03e-14 75.5
MsG0180001619.01.T01 AT5G23940 24.350 423 240 16 61 438 62 449 3.79e-14 74.7
MsG0180001619.01.T01 AT5G47950 23.182 440 283 18 6 427 3 405 6.74e-14 73.9
MsG0180001619.01.T01 AT3G50290 25.651 269 161 9 138 382 16 269 2.01e-13 70.9
MsG0180001619.01.T01 AT3G23840 28.643 199 117 7 80 269 81 263 2.68e-12 68.9

Find 122 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCATTGTTGGTGATTC+AGG 0.100165 1:-24200109 MsG0180001619.01.T01:intron
TTCAAACCAACATTAGTTTA+AGG 0.181902 1:+24197362 None:intergenic
AATTATACCTTTCCTCATTA+TGG 0.183641 1:-24200544 MsG0180001619.01.T01:exon
TGCGGTGAGGATTTCGAAAT+TGG 0.188633 1:+24197974 None:intergenic
GGGTCTTTCCCTGCCATATT+TGG 0.199762 1:+24200369 None:intergenic
GCATTCAGTTGCGGATTTAA+TGG 0.222413 1:-24197715 MsG0180001619.01.T01:CDS
TTTGAGGGTCTTACAAATTC+AGG 0.246276 1:+24200486 None:intergenic
GGATTTGGAGATGTTGAATT+TGG 0.267773 1:-24197627 MsG0180001619.01.T01:CDS
TTTGAAAACGTAACCCTTCT+TGG 0.271683 1:+24200421 None:intergenic
TTGAATTTCTTTGCTATGAT+TGG 0.304292 1:-24197344 MsG0180001619.01.T01:three_prime_UTR
CACCTAAGGCACTCATGAAT+TGG 0.305227 1:+24198228 None:intergenic
TGGGAGAAGAGCGCGAATTT+TGG 0.306912 1:+24198016 None:intergenic
GCGATGGGCCATGTCATCTA+AGG 0.318314 1:+24198067 None:intergenic
ATCCATTTGCAGGTAGGTTA+AGG 0.320236 1:-24200299 MsG0180001619.01.T01:CDS
TAAGGGAATAATTGTTCCTT+TGG 0.330029 1:+24198085 None:intergenic
GATGTTAGTTTGAAAGAATT+TGG 0.347283 1:-24200207 MsG0180001619.01.T01:CDS
GAAACAATGAAACTAGGTTT+TGG 0.349312 1:+24197396 None:intergenic
TTATAAGTATGATCCAAATA+TGG 0.357454 1:-24200382 MsG0180001619.01.T01:CDS
GATGTGACACGTGCTGGATT+TGG 0.363433 1:-24197642 MsG0180001619.01.T01:CDS
TGGAGATGTTGAATTTGGTT+GGG 0.375385 1:-24197622 MsG0180001619.01.T01:CDS
TACAACCGCCGGGAAACTAA+TGG 0.379563 1:-24197805 MsG0180001619.01.T01:CDS
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 1:-24197517 MsG0180001619.01.T01:CDS
TTGGAGATGTTGAATTTGGT+TGG 0.391534 1:-24197623 MsG0180001619.01.T01:CDS
AACATTAACGAACCTACTAT+TGG 0.395610 1:-24197423 MsG0180001619.01.T01:CDS
AATGAGCGACGCAGCAGGTT+TGG 0.400466 1:-24198252 MsG0180001619.01.T01:CDS
AAATCCTCACCGCATGCCTT+TGG 0.410833 1:-24197965 MsG0180001619.01.T01:CDS
ATAATTGTTCCTTTGGTGTC+GGG 0.411133 1:+24198092 None:intergenic
GCTATTTAACTCGGTTGATA+AGG 0.413333 1:+24197186 None:intergenic
CTGCTGCGTCGCTCATTGTA+TGG 0.414060 1:+24198258 None:intergenic
CGAACTTCTTCGTCAGTGTC+TGG 0.418327 1:+24197918 None:intergenic
AAACTAATGGAAAATCCGTT+AGG 0.419834 1:-24197792 MsG0180001619.01.T01:CDS
TCCATTTGCAGGTAGGTTAA+GGG 0.425790 1:-24200298 MsG0180001619.01.T01:CDS
AGGTCCTGATAGGAAACTTA+TGG 0.427794 1:-24200274 MsG0180001619.01.T01:CDS
TTGGTGGATCCCTTGCGTTT+AGG 0.429033 1:+24198150 None:intergenic
TGCGGATTTAATGGTTATCA+AGG 0.430701 1:-24197706 MsG0180001619.01.T01:CDS
AAGAACCAGGAACATCAAAA+AGG 0.431690 1:+24200145 None:intergenic
CCTTAGGTGAAATTTCTTGC+GGG 0.433387 1:-24198214 MsG0180001619.01.T01:CDS
GTCCAATTCATGAGTGCCTT+AGG 0.433988 1:-24198230 MsG0180001619.01.T01:CDS
TCCCTTAACCTACCTGCAAA+TGG 0.437418 1:+24200297 None:intergenic
CCGGCGGTTGTAACCGCGAC+GGG 0.439479 1:+24197816 None:intergenic
TCACTGTGAATGATAGAGAT+TGG 0.444139 1:+24200520 None:intergenic
TCAACCATAAGTTTCCTATC+AGG 0.448222 1:+24200270 None:intergenic
AGTGCTTAACTCTCCATTGT+TGG 0.450887 1:-24200118 MsG0180001619.01.T01:CDS
CCCGTCGCGGTTACAACCGC+CGG 0.452094 1:-24197816 MsG0180001619.01.T01:CDS
GAAAGGTATAATTGAAGAAA+GGG 0.453489 1:+24200554 None:intergenic
GCATTACCGTAGTAACCATT+TGG 0.454482 1:+24197849 None:intergenic
TACTTATAAAATTGTATCAC+TGG 0.463814 1:+24200396 None:intergenic
AAGGGTACTAAATTTGATAG+TGG 0.464191 1:+24200572 None:intergenic
CACTGTGAATGATAGAGATT+GGG 0.466767 1:+24200521 None:intergenic
TTGAGGGTCTTACAAATTCA+GGG 0.476311 1:+24200487 None:intergenic
GGAAAGGTATAATTGAAGAA+AGG 0.476453 1:+24200553 None:intergenic
GGTTAAGGGAAGGTCCTGAT+AGG 0.477447 1:-24200284 MsG0180001619.01.T01:CDS
CAATCTCACCGGTATGGCAT+AGG 0.484304 1:-24198178 MsG0180001619.01.T01:CDS
TGTAGACCTTAAACTAATGT+TGG 0.490789 1:-24197368 MsG0180001619.01.T01:exon
GGAGATGTTGAATTTGGTTG+GGG 0.493359 1:-24197621 MsG0180001619.01.T01:CDS
TTTAATCCACCGTTACCAAA+TGG 0.496653 1:-24197864 MsG0180001619.01.T01:CDS
GTGTCTGATGTGACACGTGC+TGG 0.497738 1:-24197648 MsG0180001619.01.T01:CDS
AAGTATGATCCAAATATGGC+AGG 0.501582 1:-24200378 MsG0180001619.01.T01:CDS
AGCTCATCCAAACAAGGAAA+AGG 0.503240 1:+24200168 None:intergenic
CGATGAGTGCATGTTACTCT+TGG 0.517477 1:+24198131 None:intergenic
AACTTCTCCATGGCTTGAGC+TGG 0.517646 1:+24197477 None:intergenic
AATAATTGTTCCTTTGGTGT+CGG 0.522248 1:+24198091 None:intergenic
TGCCATACCGGTGAGATTGA+AGG 0.523692 1:+24198182 None:intergenic
CGCTCATTGTATGGTTTAGA+CGG 0.527004 1:+24198267 None:intergenic
AACTAATGGAAAATCCGTTA+GGG 0.528322 1:-24197791 MsG0180001619.01.T01:CDS
GGAGGAGTTGGTGCTATACC+TGG 0.535378 1:-24197570 MsG0180001619.01.T01:CDS
CATGTATTCTTGAGTTACAT+CGG 0.537828 1:+24197737 None:intergenic
GCACCAACTCCTCCTTTAGC+TGG 0.539177 1:+24197579 None:intergenic
GTATATGGTGGACCAGCTAA+AGG 0.539427 1:-24197591 MsG0180001619.01.T01:CDS
GCCTTAGGTGAAATTTCTTG+CGG 0.540414 1:-24198215 MsG0180001619.01.T01:CDS
ATGGTTGATTGTAATGATGA+AGG 0.540421 1:-24200255 MsG0180001619.01.T01:CDS
CTCTTTGACGAACTTCTCCA+TGG 0.543009 1:+24197467 None:intergenic
AATCTCACCGGTATGGCATA+GGG 0.546127 1:-24198177 MsG0180001619.01.T01:CDS
TGAGTGCATGTTACTCTTGG+TGG 0.546616 1:+24198134 None:intergenic
CAGACATAGATGACCAAGAA+GGG 0.546800 1:-24200434 MsG0180001619.01.T01:CDS
AGGAGCTCCCTATGCCATAC+CGG 0.550924 1:+24198170 None:intergenic
TTGTTTACCAGCTCAAGCCA+TGG 0.552757 1:-24197484 MsG0180001619.01.T01:CDS
GGACCAGCTAAAGGAGGAGT+TGG 0.553044 1:-24197582 MsG0180001619.01.T01:CDS
CCGTCGCGGTTACAACCGCC+GGG 0.557301 1:-24197815 MsG0180001619.01.T01:CDS
ATAGAGATTGGGCCATAATG+AGG 0.559544 1:+24200532 None:intergenic
TTTATTATCCATTTGCAGGT+AGG 0.559740 1:-24200305 MsG0180001619.01.T01:CDS
ATTAACGAACCTACTATTGG+TGG 0.562257 1:-24197420 MsG0180001619.01.T01:CDS
AACCTTCAATCTCACCGGTA+TGG 0.568331 1:-24198184 MsG0180001619.01.T01:CDS
CCCGCAAGAAATTTCACCTA+AGG 0.570019 1:+24198214 None:intergenic
CTCTATCATTCACAGTGAAG+AGG 0.571132 1:-24200515 MsG0180001619.01.T01:CDS
AGTATGATCCAAATATGGCA+GGG 0.572294 1:-24200377 MsG0180001619.01.T01:CDS
AACTCTAGTGCATACCCTAA+CGG 0.573134 1:+24197777 None:intergenic
CCGTTACCAAATGGTTACTA+CGG 0.574521 1:-24197855 MsG0180001619.01.T01:CDS
AGAATACATGCATTCAGTTG+CGG 0.574989 1:-24197724 MsG0180001619.01.T01:CDS
AATTATTCCCTTAGATGACA+TGG 0.576689 1:-24198075 MsG0180001619.01.T01:CDS
ATAGGGAGCTCCTAAACGCA+AGG 0.581041 1:-24198160 MsG0180001619.01.T01:CDS
CCCGGCGGTTGTAACCGCGA+CGG 0.586843 1:+24197815 None:intergenic
AATACCTGAATCACCAACAA+TGG 0.589517 1:+24200105 None:intergenic
ACATTAGTTTAAGGTCTACA+AGG 0.590944 1:+24197371 None:intergenic
CATACAATGAGCGACGCAGC+AGG 0.597595 1:-24198257 MsG0180001619.01.T01:CDS
CGATGGGCCATGTCATCTAA+GGG 0.603002 1:+24198068 None:intergenic
AAGGAAGAAACAATGAAACT+AGG 0.603955 1:+24197390 None:intergenic
GCGGATTTAATGGTTATCAA+GGG 0.606067 1:-24197705 MsG0180001619.01.T01:CDS
ATCTGCATTGTCAATGCTCG+TGG 0.609350 1:-24197891 MsG0180001619.01.T01:CDS
CCGTAGTAACCATTTGGTAA+CGG 0.610295 1:+24197855 None:intergenic
ATATAAAAGCTAGCAACACC+AGG 0.611199 1:+24197552 None:intergenic
AAAAGGAGCTCATCCAAACA+AGG 0.614068 1:+24200162 None:intergenic
GAACGAACCTTCAATCTCAC+CGG 0.615082 1:-24198189 MsG0180001619.01.T01:CDS
TCAGACATAGATGACCAAGA+AGG 0.615146 1:-24200435 MsG0180001619.01.T01:CDS
CTTCTAACCACAGTAAAATG+TGG 0.618528 1:+24197678 None:intergenic
TGAGGGTCTTACAAATTCAG+GGG 0.622901 1:+24200488 None:intergenic
GATTGGGCCATAATGAGGAA+AGG 0.628876 1:+24200537 None:intergenic
CGATTGTACGACAACGCCAA+AGG 0.629387 1:+24197949 None:intergenic
GCTTGAGCTGGTAAACAAAG+TGG 0.635861 1:+24197489 None:intergenic
TCATCCAAACAAGGAAAAGG+AGG 0.636072 1:+24200171 None:intergenic
GAACAAGTTCCCGACACCAA+AGG 0.642952 1:-24198101 MsG0180001619.01.T01:CDS
TTTGCAGGTAGGTTAAGGGA+AGG 0.651163 1:-24200294 MsG0180001619.01.T01:CDS
TAGTAACCATTTGGTAACGG+TGG 0.653193 1:+24197858 None:intergenic
TAGGTAACACGTCTCAAGTG+TGG 0.654765 1:-24198308 MsG0180001619.01.T01:CDS
AACGCCAAAGGCATGCGGTG+AGG 0.656317 1:+24197961 None:intergenic
TAGGGAGCTCCTAAACGCAA+GGG 0.659865 1:-24198159 MsG0180001619.01.T01:CDS
TATGGTGGACCAGCTAAAGG+AGG 0.665823 1:-24197588 MsG0180001619.01.T01:CDS
TTAAGCACTTCTGAAGAACC+AGG 0.667440 1:+24200132 None:intergenic
GAGATGTTGAATTTGGTTGG+GGG 0.671180 1:-24197620 MsG0180001619.01.T01:CDS
GTTACAAGAAATAATCACGA+TGG 0.691729 1:-24197301 MsG0180001619.01.T01:three_prime_UTR
GTAACACGTCTCAAGTGTGG+TGG 0.692143 1:-24198305 MsG0180001619.01.T01:CDS
ACGACAACGCCAAAGGCATG+CGG 0.713965 1:+24197956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTAGGTTATTATTT+TGG + Chr1:24198497-24198516 None:intergenic 10.0%
!!! TAACCTAAAATAATTTTTTT+AGG - Chr1:24198503-24198522 MsG0180001619.01.T01:intron 10.0%
!!! TAGTTTTAAAAGTAATATTT+TGG + Chr1:24197934-24197953 None:intergenic 10.0%
!!! TATTTCTTTTGAAAAATTAA+CGG + Chr1:24197776-24197795 None:intergenic 10.0%
!!! TTTCCTAAAAAAATTATTTT+AGG + Chr1:24198509-24198528 None:intergenic 10.0%
!! AAATTATCCTTATTAACTAT+TGG + Chr1:24197958-24197977 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - Chr1:24197957-24197976 MsG0180001619.01.T01:CDS 15.0%
!! TATTTAATTGCATAAAAAAG+TGG - Chr1:24198611-24198630 MsG0180001619.01.T01:intron 15.0%
!!! ATTGTTTTTATAACAATTTG+TGG - Chr1:24199277-24199296 MsG0180001619.01.T01:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + Chr1:24197831-24197850 None:intergenic 15.0%
!! AAAAAAATTTAATTCAGCTG+AGG - Chr1:24198920-24198939 MsG0180001619.01.T01:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - Chr1:24197948-24197967 MsG0180001619.01.T01:CDS 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + Chr1:24197871-24197890 None:intergenic 20.0%
!! CTTACATGTAAATTTGTAAA+TGG - Chr1:24198652-24198671 MsG0180001619.01.T01:intron 20.0%
!! GAGTAGATAACTTTATATTA+TGG - Chr1:24198064-24198083 MsG0180001619.01.T01:CDS 20.0%
!! TACTTATAAAATTGTATCAC+TGG + Chr1:24197287-24197306 None:intergenic 20.0%
!! TAGACAAAATTTATACATCA+CGG - Chr1:24199209-24199228 MsG0180001619.01.T01:intron 20.0%
!! TATGTTTCATAAATTTACAG+TGG - Chr1:24197643-24197662 MsG0180001619.01.T01:CDS 20.0%
!! TTATAAGTATGATCCAAATA+TGG - Chr1:24197298-24197317 MsG0180001619.01.T01:three_prime_UTR 20.0%
!! TTATTCCTAGGATTTAAATA+TGG + Chr1:24198429-24198448 None:intergenic 20.0%
!! TTTAGGAAACACAAAATAAT+TGG - Chr1:24198520-24198539 MsG0180001619.01.T01:intron 20.0%
!!! AAATTTGATAGTGGTTATTA+TGG + Chr1:24197102-24197121 None:intergenic 20.0%
!!! ATTTTCCATATTTAAATCCT+AGG - Chr1:24198421-24198440 MsG0180001619.01.T01:intron 20.0%
!!! CTTTTCTAATAATATCAACA+GGG + Chr1:24197334-24197353 None:intergenic 20.0%
!!! TTATTCAACTAGTTAGATTT+TGG - Chr1:24198155-24198174 MsG0180001619.01.T01:CDS 20.0%
! AAATAGCCGTCTAAAAAAAT+TGG - Chr1:24200510-24200529 MsG0180001619.01.T01:CDS 25.0%
! AATATAGTACGAGTATATGT+TGG + Chr1:24197747-24197766 None:intergenic 25.0%
! AATTATACCTTTCCTCATTA+TGG - Chr1:24197136-24197155 MsG0180001619.01.T01:three_prime_UTR 25.0%
! ATACCTTTCAAAAATGCTAA+AGG - Chr1:24200149-24200168 MsG0180001619.01.T01:CDS 25.0%
! ATATAGTACAAGTGTATGTT+CGG + Chr1:24197700-24197719 None:intergenic 25.0%
! ATATAGTACGAGTATATGTT+GGG + Chr1:24197746-24197765 None:intergenic 25.0%
! CATATACTCGTACTATATTA+AGG - Chr1:24197748-24197767 MsG0180001619.01.T01:CDS 25.0%
! TTTCTATCGAAAAGAATCTT+AGG - Chr1:24198468-24198487 MsG0180001619.01.T01:intron 25.0%
!! CAAGCACAAATAATTGTTTT+TGG - Chr1:24198796-24198815 MsG0180001619.01.T01:intron 25.0%
!! GAAAGGTATAATTGAAGAAA+GGG + Chr1:24197129-24197148 None:intergenic 25.0%
!! GAAAGTAATTTTACTTCATG+AGG + Chr1:24197227-24197246 None:intergenic 25.0%
!! GATGTTAGTTTGAAAGAATT+TGG - Chr1:24197473-24197492 MsG0180001619.01.T01:CDS 25.0%
!! GCTTTTCTAATAATATCAAC+AGG + Chr1:24197335-24197354 None:intergenic 25.0%
!! GTTCACAAACAAAATTTTAC+AGG - Chr1:24198773-24198792 MsG0180001619.01.T01:intron 25.0%
!! TTCAAACCAACATTAGTTTA+AGG + Chr1:24200321-24200340 None:intergenic 25.0%
!! TTGAATTTCTTTGCTATGAT+TGG - Chr1:24200336-24200355 MsG0180001619.01.T01:CDS 25.0%
!! TTGATTGTAACAACACATTT+TGG + Chr1:24199067-24199086 None:intergenic 25.0%
!! TTTAAGATCAGATACGTATT+TGG + Chr1:24198953-24198972 None:intergenic 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - Chr1:24198038-24198057 MsG0180001619.01.T01:CDS 25.0%
!!! ACTTCACCAATTTTTTTAGA+CGG + Chr1:24200519-24200538 None:intergenic 25.0%
!!! GCACATATATTTTTTGTAAG+AGG - Chr1:24198674-24198693 MsG0180001619.01.T01:intron 25.0%
!!! TTTAAAATGAGTGTCGTTTT+AGG + Chr1:24198037-24198056 None:intergenic 25.0%
AAACTAATGGAAAATCCGTT+AGG - Chr1:24199888-24199907 MsG0180001619.01.T01:intron 30.0%
AACATTAACGAACCTACTAT+TGG - Chr1:24200257-24200276 MsG0180001619.01.T01:CDS 30.0%
AACTAATGGAAAATCCGTTA+GGG - Chr1:24199889-24199908 MsG0180001619.01.T01:intron 30.0%
AAGGAAGAAACAATGAAACT+AGG + Chr1:24200293-24200312 None:intergenic 30.0%
AATTATTCCCTTAGATGACA+TGG - Chr1:24199605-24199624 MsG0180001619.01.T01:intron 30.0%
AGATTTGTAAATGACACAAG+TGG - Chr1:24198710-24198729 MsG0180001619.01.T01:intron 30.0%
ATGGTTGATTGTAATGATGA+AGG - Chr1:24197425-24197444 MsG0180001619.01.T01:CDS 30.0%
CATGTATTCTTGAGTTACAT+CGG + Chr1:24199946-24199965 None:intergenic 30.0%
GTTACAAGAAATAATCACGA+TGG - Chr1:24200379-24200398 MsG0180001619.01.T01:CDS 30.0%
TAAGGGAATAATTGTTCCTT+TGG + Chr1:24199598-24199617 None:intergenic 30.0%
TGTAGACCTTAAACTAATGT+TGG - Chr1:24200312-24200331 MsG0180001619.01.T01:CDS 30.0%
TTTATTATCCATTTGCAGGT+AGG - Chr1:24197375-24197394 MsG0180001619.01.T01:exon 30.0%
TTTCAAAAATGCTAAAGGAG+AGG - Chr1:24200154-24200173 MsG0180001619.01.T01:CDS 30.0%
! AATAATTGTTCCTTTGGTGT+CGG + Chr1:24199592-24199611 None:intergenic 30.0%
! ACATTAGTTTAAGGTCTACA+AGG + Chr1:24200312-24200331 None:intergenic 30.0%
! CTAGTTAGATTTTGGACTAA+TGG - Chr1:24198163-24198182 MsG0180001619.01.T01:CDS 30.0%
! GAAACAATGAAACTAGGTTT+TGG + Chr1:24200287-24200306 None:intergenic 30.0%
! GGAAAGGTATAATTGAAGAA+AGG + Chr1:24197130-24197149 None:intergenic 30.0%
! TCTCCTTTAGCATTTTTGAA+AGG + Chr1:24200155-24200174 None:intergenic 30.0%
! TGTGCAGAGTATTAATTAGA+GGG + Chr1:24197905-24197924 None:intergenic 30.0%
! TTTTAGACGGCTATTTAACT+CGG + Chr1:24200506-24200525 None:intergenic 30.0%
!! AAGGGTACTAAATTTGATAG+TGG + Chr1:24197111-24197130 None:intergenic 30.0%
!! CTTGAATTTTGACCATTTGT+AGG - Chr1:24199353-24199372 MsG0180001619.01.T01:intron 30.0%
!! GTGTTTTATTATCCATTTGC+AGG - Chr1:24197371-24197390 MsG0180001619.01.T01:exon 30.0%
!!! CGAAATTGGATTGTTTTTGT+TGG + Chr1:24199695-24199714 None:intergenic 30.0%
AAAAATGCTAAAGGAGAGGA+AGG - Chr1:24200158-24200177 MsG0180001619.01.T01:CDS 35.0%
AAATGATTCAAGTGAGGTCA+AGG + Chr1:24198868-24198887 None:intergenic 35.0%
AAGAACCAGGAACATCAAAA+AGG + Chr1:24197538-24197557 None:intergenic 35.0%
AAGATCAGATACGTATTTGG+TGG + Chr1:24198950-24198969 None:intergenic 35.0%
AAGTATGATCCAAATATGGC+AGG - Chr1:24197302-24197321 MsG0180001619.01.T01:three_prime_UTR 35.0%
AATACCTGAATCACCAACAA+TGG + Chr1:24197578-24197597 None:intergenic 35.0%
AGAATACATGCATTCAGTTG+CGG - Chr1:24199956-24199975 MsG0180001619.01.T01:intron 35.0%
AGACACACACTAGAGTTAAA+AGG + Chr1:24199106-24199125 None:intergenic 35.0%
AGTATGATCCAAATATGGCA+GGG - Chr1:24197303-24197322 MsG0180001619.01.T01:three_prime_UTR 35.0%
ATATAAAAGCTAGCAACACC+AGG + Chr1:24200131-24200150 None:intergenic 35.0%
ATTAACGAACCTACTATTGG+TGG - Chr1:24200260-24200279 MsG0180001619.01.T01:CDS 35.0%
CACTGTGAATGATAGAGATT+GGG + Chr1:24197162-24197181 None:intergenic 35.0%
CTACACAAATGATTCAAGTG+AGG + Chr1:24198874-24198893 None:intergenic 35.0%
CTCACTTGAATCATTTGTGT+AGG - Chr1:24198872-24198891 MsG0180001619.01.T01:intron 35.0%
CTTCTAACCACAGTAAAATG+TGG + Chr1:24200005-24200024 None:intergenic 35.0%
GCGGATTTAATGGTTATCAA+GGG - Chr1:24199975-24199994 MsG0180001619.01.T01:intron 35.0%
GGATTTGGAGATGTTGAATT+TGG - Chr1:24200053-24200072 MsG0180001619.01.T01:intron 35.0%
TCAACCATAAGTTTCCTATC+AGG + Chr1:24197413-24197432 None:intergenic 35.0%
TCACTGTGAATGATAGAGAT+TGG + Chr1:24197163-24197182 None:intergenic 35.0%
TCGTAGAAACTAGAAAGAGT+GGG - Chr1:24199036-24199055 MsG0180001619.01.T01:intron 35.0%
TGCGGATTTAATGGTTATCA+AGG - Chr1:24199974-24199993 MsG0180001619.01.T01:intron 35.0%
TGGAGATGTTGAATTTGGTT+GGG - Chr1:24200058-24200077 MsG0180001619.01.T01:intron 35.0%
TTCGTAGAAACTAGAAAGAG+TGG - Chr1:24199035-24199054 MsG0180001619.01.T01:intron 35.0%
TTGAGGGTCTTACAAATTCA+GGG + Chr1:24197196-24197215 None:intergenic 35.0%
TTGGAGATGTTGAATTTGGT+TGG - Chr1:24200057-24200076 MsG0180001619.01.T01:intron 35.0%
TTTAATCCACCGTTACCAAA+TGG - Chr1:24199816-24199835 MsG0180001619.01.T01:intron 35.0%
TTTGAAAACGTAACCCTTCT+TGG + Chr1:24197262-24197281 None:intergenic 35.0%
TTTGAGGGTCTTACAAATTC+AGG + Chr1:24197197-24197216 None:intergenic 35.0%
TTTGTAAATGACACAAGTGG+AGG - Chr1:24198713-24198732 MsG0180001619.01.T01:intron 35.0%
! GCTATTTAACTCGGTTGATA+AGG + Chr1:24200497-24200516 None:intergenic 35.0%
! GTGTGCAGAGTATTAATTAG+AGG + Chr1:24197906-24197925 None:intergenic 35.0%
! TGCAAGACACTTTTATTCCT+AGG + Chr1:24198441-24198460 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + Chr1:24197805-24197824 None:intergenic 35.0%
!! ATAATTGTTCCTTTGGTGTC+GGG + Chr1:24199591-24199610 None:intergenic 35.0%
!!! ATTGTTTTTGTTGGTGAGGT+GGG + Chr1:24199686-24199705 None:intergenic 35.0%
!!! GACACTCATTTTAAAACGGA+GGG - Chr1:24198042-24198061 MsG0180001619.01.T01:CDS 35.0%
!!! TCATGAGGTGTTTGTTTTGA+GGG + Chr1:24197212-24197231 None:intergenic 35.0%
!!! TTCATGAGGTGTTTGTTTTG+AGG + Chr1:24197213-24197232 None:intergenic 35.0%
!!! TTGGATTGTTTTTGTTGGTG+AGG + Chr1:24199690-24199709 None:intergenic 35.0%
AAAAGGAGCTCATCCAAACA+AGG + Chr1:24197521-24197540 None:intergenic 40.0%
AACTCTAGTGCATACCCTAA+CGG + Chr1:24199906-24199925 None:intergenic 40.0%
ACCGAAGAAAAAAGAGCGAT+GGG + Chr1:24199631-24199650 None:intergenic 40.0%
AGAAACTAGAAAGAGTGGGT+GGG - Chr1:24199040-24199059 MsG0180001619.01.T01:intron 40.0%
AGCTCATCCAAACAAGGAAA+AGG + Chr1:24197515-24197534 None:intergenic 40.0%
AGGTCCTGATAGGAAACTTA+TGG - Chr1:24197406-24197425 MsG0180001619.01.T01:CDS 40.0%
AGTGCTTAACTCTCCATTGT+TGG - Chr1:24197562-24197581 MsG0180001619.01.T01:CDS 40.0%
ATAGAGATTGGGCCATAATG+AGG + Chr1:24197151-24197170 None:intergenic 40.0%
ATCCATTTGCAGGTAGGTTA+AGG - Chr1:24197381-24197400 MsG0180001619.01.T01:exon 40.0%
CAAGTGTATGTTCGGATTTG+CGG + Chr1:24197692-24197711 None:intergenic 40.0%
CAGACATAGATGACCAAGAA+GGG - Chr1:24197246-24197265 MsG0180001619.01.T01:three_prime_UTR 40.0%
CCGTAGTAACCATTTGGTAA+CGG + Chr1:24199828-24199847 None:intergenic 40.0%
CCGTTACCAAATGGTTACTA+CGG - Chr1:24199825-24199844 MsG0180001619.01.T01:intron 40.0%
CCTTAGGTGAAATTTCTTGC+GGG - Chr1:24199466-24199485 MsG0180001619.01.T01:intron 40.0%
CGCTCATTGTATGGTTTAGA+CGG + Chr1:24199416-24199435 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG - Chr1:24198299-24198318 MsG0180001619.01.T01:CDS 40.0%
CTCTATCATTCACAGTGAAG+AGG - Chr1:24197165-24197184 MsG0180001619.01.T01:three_prime_UTR 40.0%
GAGATGTTGAATTTGGTTGG+GGG - Chr1:24200060-24200079 MsG0180001619.01.T01:intron 40.0%
GCACTATTTGCCACAATTCA+AGG - Chr1:24198296-24198315 MsG0180001619.01.T01:CDS 40.0%
GCATTACCGTAGTAACCATT+TGG + Chr1:24199834-24199853 None:intergenic 40.0%
GCATTCAGTTGCGGATTTAA+TGG - Chr1:24199965-24199984 MsG0180001619.01.T01:intron 40.0%
GCCTTAGGTGAAATTTCTTG+CGG - Chr1:24199465-24199484 MsG0180001619.01.T01:intron 40.0%
GGAGATGTTGAATTTGGTTG+GGG - Chr1:24200059-24200078 MsG0180001619.01.T01:intron 40.0%
GGATCAAGCTATTACATGGT+TGG - Chr1:24199230-24199249 MsG0180001619.01.T01:intron 40.0%
GGCAAATAGTGCATTGTGAT+TGG + Chr1:24198288-24198307 None:intergenic 40.0%
TAGAAACTAGAAAGAGTGGG+TGG - Chr1:24199039-24199058 MsG0180001619.01.T01:intron 40.0%
TCACGGATCAAGCTATTACA+TGG - Chr1:24199226-24199245 MsG0180001619.01.T01:intron 40.0%
TCAGACATAGATGACCAAGA+AGG - Chr1:24197245-24197264 MsG0180001619.01.T01:three_prime_UTR 40.0%
TCATCCAAACAAGGAAAAGG+AGG + Chr1:24197512-24197531 None:intergenic 40.0%
TCCATTTGCAGGTAGGTTAA+GGG - Chr1:24197382-24197401 MsG0180001619.01.T01:exon 40.0%
TGAGACGTGTTACCTACAAA+TGG + Chr1:24199368-24199387 None:intergenic 40.0%
TGAGGGTCTTACAAATTCAG+GGG + Chr1:24197195-24197214 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - Chr1:24198322-24198341 MsG0180001619.01.T01:intron 40.0%
! TCAACCTCCTTTTCCTTGTT+TGG - Chr1:24197505-24197524 MsG0180001619.01.T01:CDS 40.0%
! TTAAGCACTTCTGAAGAACC+AGG + Chr1:24197551-24197570 None:intergenic 40.0%
!! ATTTTCCATTAGTTTCCCGG+CGG + Chr1:24199883-24199902 None:intergenic 40.0%
!! CGGATTTTCCATTAGTTTCC+CGG + Chr1:24199886-24199905 None:intergenic 40.0%
!! TAGTAACCATTTGGTAACGG+TGG + Chr1:24199825-24199844 None:intergenic 40.0%
!!! CGACACTCATTTTAAAACGG+AGG - Chr1:24198041-24198060 MsG0180001619.01.T01:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr1:24197801-24197820 None:intergenic 40.0%
!!! GATTGTTTTTGTTGGTGAGG+TGG + Chr1:24199687-24199706 None:intergenic 40.0%
AACCTTCAATCTCACCGGTA+TGG - Chr1:24199496-24199515 MsG0180001619.01.T01:intron 45.0%
AATCTCACCGGTATGGCATA+GGG - Chr1:24199503-24199522 MsG0180001619.01.T01:intron 45.0%
ATCTGCATTGTCAATGCTCG+TGG - Chr1:24199789-24199808 MsG0180001619.01.T01:intron 45.0%
CCCGCAAGAAATTTCACCTA+AGG + Chr1:24199469-24199488 None:intergenic 45.0%
CGAGTATATGTTGGGATGAG+TGG + Chr1:24197738-24197757 None:intergenic 45.0%
CGATGAGTGCATGTTACTCT+TGG + Chr1:24199552-24199571 None:intergenic 45.0%
CTCTTTGACGAACTTCTCCA+TGG + Chr1:24200216-24200235 None:intergenic 45.0%
GAACGAACCTTCAATCTCAC+CGG - Chr1:24199491-24199510 MsG0180001619.01.T01:intron 45.0%
GACCGAAGAAAAAAGAGCGA+TGG + Chr1:24199632-24199651 None:intergenic 45.0%
GATTGGGCCATAATGAGGAA+AGG + Chr1:24197146-24197165 None:intergenic 45.0%
GCTTGAGCTGGTAAACAAAG+TGG + Chr1:24200194-24200213 None:intergenic 45.0%
GTCCAATTCATGAGTGCCTT+AGG - Chr1:24199450-24199469 MsG0180001619.01.T01:intron 45.0%
TAGGTAACACGTCTCAAGTG+TGG - Chr1:24199372-24199391 MsG0180001619.01.T01:intron 45.0%
TCCCTTAACCTACCTGCAAA+TGG + Chr1:24197386-24197405 None:intergenic 45.0%
TGAGGTCAAGGTTGTCTTTG+AGG + Chr1:24198856-24198875 None:intergenic 45.0%
TGAGTGCATGTTACTCTTGG+TGG + Chr1:24199549-24199568 None:intergenic 45.0%
TGCGGTGAGGATTTCGAAAT+TGG + Chr1:24199709-24199728 None:intergenic 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG - Chr1:24200163-24200182 MsG0180001619.01.T01:CDS 45.0%
TTGTTTACCAGCTCAAGCCA+TGG - Chr1:24200196-24200215 MsG0180001619.01.T01:CDS 45.0%
TTTGCAGGTAGGTTAAGGGA+AGG - Chr1:24197386-24197405 MsG0180001619.01.T01:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - Chr1:24198316-24198335 MsG0180001619.01.T01:intron 45.0%
! CACCTAAGGCACTCATGAAT+TGG + Chr1:24199455-24199474 None:intergenic 45.0%
! GAGCTCCTTTTTGATGTTCC+TGG - Chr1:24197530-24197549 MsG0180001619.01.T01:CDS 45.0%
! GGGTAGACCACATTTTACTG+TGG - Chr1:24199995-24200014 MsG0180001619.01.T01:intron 45.0%
!! CTCTCCATTGTTGGTGATTC+AGG - Chr1:24197571-24197590 MsG0180001619.01.T01:CDS 45.0%
!! GTATATGGTGGACCAGCTAA+AGG - Chr1:24200089-24200108 MsG0180001619.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr1:24197802-24197821 None:intergenic 45.0%
!!! GCCCATCGCTCTTTTTTCTT+CGG - Chr1:24199627-24199646 MsG0180001619.01.T01:intron 45.0%
!!! GGTTTTGGACCACCAATAGT+AGG + Chr1:24200272-24200291 None:intergenic 45.0%
!!! TTTTTTCTTCGGTCCAACCG+AGG - Chr1:24199638-24199657 MsG0180001619.01.T01:intron 45.0%
!! ATAAATTAATTAGTTAAAAT+TGG + Chr1:24199304-24199323 None:intergenic 5.0%
AAATCCTCACCGCATGCCTT+TGG - Chr1:24199715-24199734 MsG0180001619.01.T01:intron 50.0%
AACTTCTCCATGGCTTGAGC+TGG + Chr1:24200206-24200225 None:intergenic 50.0%
AGCCACACCTCCTTGAATTG+TGG + Chr1:24198309-24198328 None:intergenic 50.0%
ATAGGGAGCTCCTAAACGCA+AGG - Chr1:24199520-24199539 MsG0180001619.01.T01:intron 50.0%
CAATCTCACCGGTATGGCAT+AGG - Chr1:24199502-24199521 MsG0180001619.01.T01:intron 50.0%
CGAACTTCTTCGTCAGTGTC+TGG + Chr1:24199765-24199784 None:intergenic 50.0%
CGATGGGCCATGTCATCTAA+GGG + Chr1:24199615-24199634 None:intergenic 50.0%
CGATTGTACGACAACGCCAA+AGG + Chr1:24199734-24199753 None:intergenic 50.0%
GAACAAGTTCCCGACACCAA+AGG - Chr1:24199579-24199598 MsG0180001619.01.T01:intron 50.0%
GATGTGACACGTGCTGGATT+TGG - Chr1:24200038-24200057 MsG0180001619.01.T01:intron 50.0%
GGGTCTTTCCCTGCCATATT+TGG + Chr1:24197314-24197333 None:intergenic 50.0%
GGTTAAGGGAAGGTCCTGAT+AGG - Chr1:24197396-24197415 MsG0180001619.01.T01:CDS 50.0%
GGTTGGGGGAAAGCTGTATA+TGG - Chr1:24200074-24200093 MsG0180001619.01.T01:intron 50.0%
GTAACACGTCTCAAGTGTGG+TGG - Chr1:24199375-24199394 MsG0180001619.01.T01:intron 50.0%
TACAACCGCCGGGAAACTAA+TGG - Chr1:24199875-24199894 MsG0180001619.01.T01:intron 50.0%
TAGGGAGCTCCTAAACGCAA+GGG - Chr1:24199521-24199540 MsG0180001619.01.T01:intron 50.0%
TGCCACAATTCAAGGAGGTG+TGG - Chr1:24198304-24198323 MsG0180001619.01.T01:CDS 50.0%
TGCCATACCGGTGAGATTGA+AGG + Chr1:24199501-24199520 None:intergenic 50.0%
TGGGGGAAAGCTGTATATGG+TGG - Chr1:24200077-24200096 MsG0180001619.01.T01:intron 50.0%
! TGCTTTTGCATTTCCCGTCG+CGG - Chr1:24199851-24199870 MsG0180001619.01.T01:intron 50.0%
! TTGGTGGATCCCTTGCGTTT+AGG + Chr1:24199533-24199552 None:intergenic 50.0%
!! TATGGTGGACCAGCTAAAGG+AGG - Chr1:24200092-24200111 MsG0180001619.01.T01:intron 50.0%
!! TGGGAGAAGAGCGCGAATTT+TGG + Chr1:24199667-24199686 None:intergenic 50.0%
!!! AGCGCGAATTTTGGCTACCT+CGG + Chr1:24199658-24199677 None:intergenic 50.0%
!!! CGAATTTTGGCTACCTCGGT+TGG + Chr1:24199654-24199673 None:intergenic 50.0%
AATGAGCGACGCAGCAGGTT+TGG - Chr1:24199428-24199447 MsG0180001619.01.T01:intron 55.0%
AGGAGCTCCCTATGCCATAC+CGG + Chr1:24199513-24199532 None:intergenic 55.0%
CATACAATGAGCGACGCAGC+AGG - Chr1:24199423-24199442 MsG0180001619.01.T01:intron 55.0%
CTGCTGCGTCGCTCATTGTA+TGG + Chr1:24199425-24199444 None:intergenic 55.0%
GCACCAACTCCTCCTTTAGC+TGG + Chr1:24200104-24200123 None:intergenic 55.0%
GCGATGGGCCATGTCATCTA+AGG + Chr1:24199616-24199635 None:intergenic 55.0%
GGACCAGCTAAAGGAGGAGT+TGG - Chr1:24200098-24200117 MsG0180001619.01.T01:intron 55.0%
GTGTCTGATGTGACACGTGC+TGG - Chr1:24200032-24200051 MsG0180001619.01.T01:intron 55.0%
! ACGACAACGCCAAAGGCATG+CGG + Chr1:24199727-24199746 None:intergenic 55.0%
!! GGAGGAGTTGGTGCTATACC+TGG - Chr1:24200110-24200129 MsG0180001619.01.T01:CDS 55.0%
! AACGCCAAAGGCATGCGGTG+AGG + Chr1:24199722-24199741 None:intergenic 60.0%
CCCGGCGGTTGTAACCGCGA+CGG + Chr1:24199868-24199887 None:intergenic 70.0%
CCCGTCGCGGTTACAACCGC+CGG - Chr1:24199864-24199883 MsG0180001619.01.T01:intron 70.0%
CCGGCGGTTGTAACCGCGAC+GGG + Chr1:24199867-24199886 None:intergenic 70.0%
CCGTCGCGGTTACAACCGCC+GGG - Chr1:24199865-24199884 MsG0180001619.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 24197101 24200601 24197101 ID=MsG0180001619.01;Name=MsG0180001619.01
Chr1 mRNA 24197101 24200601 24197101 ID=MsG0180001619.01.T01;Parent=MsG0180001619.01;Name=MsG0180001619.01.T01;_AED=0.50;_eAED=0.50;_QI=54|1|1|1|1|1|2|285|459
Chr1 exon 24197101 24198327 24197101 ID=MsG0180001619.01.T01:exon:40720;Parent=MsG0180001619.01.T01
Chr1 exon 24200110 24200601 24200110 ID=MsG0180001619.01.T01:exon:40719;Parent=MsG0180001619.01.T01
Chr1 five_prime_UTR 24200548 24200601 24200548 ID=MsG0180001619.01.T01:five_prime_utr;Parent=MsG0180001619.01.T01
Chr1 CDS 24200110 24200547 24200110 ID=MsG0180001619.01.T01:cds;Parent=MsG0180001619.01.T01
Chr1 CDS 24197386 24198327 24197386 ID=MsG0180001619.01.T01:cds;Parent=MsG0180001619.01.T01
Chr1 three_prime_UTR 24197101 24197385 24197101 ID=MsG0180001619.01.T01:three_prime_utr;Parent=MsG0180001619.01.T01
Gene Sequence

>MsG0180001619.01.T01

ATGGCCCAATCTCTATCATTCACAGTGAAGAGGCATGCCCCTGAATTTGTAAGACCCTCAAAACAAACACCTCATGAAGTAAAATTACTTTCAGACATAGATGACCAAGAAGGGTTACGTTTTCAAATTCCAGTGATACAATTTTATAAGTATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGGTTAAGGGAAGGTCCTGATAGGAAACTTATGGTTGATTGTAATGATGAAGGTGTTTTGTTCATTGAAGCTGATGCTGATGTTAGTTTGAAAGAATTTGGTGATGCTCTTCAACCTCCTTTTCCTTGTTTGGATGAGCTCCTTTTTGATGTTCCTGGTTCTTCAGAAGTGCTTAACTCTCCATTGTTGGTGATTCAGGTAACACGTCTCAAGTGTGGTGGTTTCATTTTTGCTCTCCGTCTAAACCATACAATGAGCGACGCAGCAGGTTTGGTCCAATTCATGAGTGCCTTAGGTGAAATTTCTTGCGGGATGAACGAACCTTCAATCTCACCGGTATGGCATAGGGAGCTCCTAAACGCAAGGGATCCACCAAGAGTAACATGCACTCATCGTGAATACGAACAAGTTCCCGACACCAAAGGAACAATTATTCCCTTAGATGACATGGCCCATCGCTCTTTTTTCTTCGGTCCAACCGAGGTAGCCAAAATTCGCGCTCTTCTCCCACCTCACCAACAAAAACAATCCAATTTCGAAATCCTCACCGCATGCCTTTGGCGTTGTCGTACAATCGCGTTACAACCAGACACTGACGAAGAAGTTCGCATAATCTGCATTGTCAATGCTCGTGGCAAGTTTAATCCACCGTTACCAAATGGTTACTACGGTAATGCTTTTGCATTTCCCGTCGCGGTTACAACCGCCGGGAAACTAATGGAAAATCCGTTAGGGTATGCACTAGAGTTAGTTAAAAAAGCAAAATCCGATGTAACTCAAGAATACATGCATTCAGTTGCGGATTTAATGGTTATCAAGGGTAGACCACATTTTACTGTGGTTAGAAGTTATCTTGTGTCTGATGTGACACGTGCTGGATTTGGAGATGTTGAATTTGGTTGGGGGAAAGCTGTATATGGTGGACCAGCTAAAGGAGGAGTTGGTGCTATACCTGGTGTTGCTAGCTTTTATATACCTTTCAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCACTTTGTTTACCAGCTCAAGCCATGGAGAAGTTCGTCAAAGAGTTAGATAGTGTGCTTAAGAACAACATTAACGAACCTACTATTGGTGGTCCAAAACCTAGTTTCATTGTTTCTTCCTTGTAG
Protein sequence

>MsG0180001619.01.T01

MAQSLSFTVKRHAPEFVRPSKQTPHEVKLLSDIDDQEGLRFQIPVIQFYKYDPNMAGKDPVDIIRKALAKTLVFYYPFAGRLREGPDRKLMVDCNDEGVLFIEADADVSLKEFGDALQPPFPCLDELLFDVPGSSEVLNSPLLVIQVTRLKCGGFIFALRLNHTMSDAAGLVQFMSALGEISCGMNEPSISPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPTEVAKIRALLPPHQQKQSNFEILTACLWRCRTIALQPDTDEEVRIICIVNARGKFNPPLPNGYYGNAFAFPVAVTTAGKLMENPLGYALELVKKAKSDVTQEYMHSVADLMVIKGRPHFTVVRSYLVSDVTRAGFGDVEFGWGKAVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPLCLPAQAMEKFVKELDSVLKNNINEPTIGGPKPSFIVSSL*