AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001620.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001620.01.T01 MTR_1g040215 92.779 457 33 0 7 463 5 461 0.0 874
MsG0180001620.01.T01 MTR_1g040175 72.867 457 121 1 7 463 5 458 0.0 682
MsG0180001620.01.T01 MTR_1g040195 70.241 457 111 3 7 463 5 436 0.0 653
MsG0180001620.01.T01 MTR_1g040320 68.709 457 107 1 7 463 5 425 0.0 634
MsG0180001620.01.T01 MTR_1g040315 64.114 457 120 4 7 463 5 417 0.0 568
MsG0180001620.01.T01 MTR_7g114560 53.795 448 200 6 5 449 4 447 3.13e-172 492
MsG0180001620.01.T01 MTR_7g114550 52.679 448 205 6 5 449 4 447 9.60e-171 488
MsG0180001620.01.T01 MTR_5g076700 53.571 448 202 5 5 449 4 448 9.83e-171 488
MsG0180001620.01.T01 MTR_7g114470 53.007 449 204 5 5 449 5 450 1.13e-167 480
MsG0180001620.01.T01 MTR_7g114520 51.762 454 202 7 5 449 5 450 2.45e-167 479
MsG0180001620.01.T01 MTR_1g081660 54.422 441 196 5 7 445 14 451 1.81e-166 477
MsG0180001620.01.T01 MTR_7g114490 52.425 433 200 5 5 434 4 433 2.37e-160 463
MsG0180001620.01.T01 MTR_0042s0190 65.993 297 101 0 167 463 1 297 6.24e-146 419
MsG0180001620.01.T01 MTR_0042s0190 68.103 232 74 0 232 463 1 232 5.60e-115 337
MsG0180001620.01.T01 MTR_7g114510 48.366 306 150 6 148 449 7 308 5.87e-93 284
MsG0180001620.01.T01 MTR_0502s0010 53.306 242 107 3 102 340 1 239 5.86e-85 261
MsG0180001620.01.T01 MTR_3g035000 59.910 222 62 3 201 421 43 238 1.27e-80 252
MsG0180001620.01.T01 MTR_0042s0230 78.322 143 31 0 7 149 5 147 4.27e-76 235
MsG0180001620.01.T01 MTR_7g114420 42.308 286 132 5 167 449 1 256 1.40e-70 225
MsG0180001620.01.T01 MTR_8g096530 33.763 388 247 7 11 394 7 388 1.45e-70 231
MsG0180001620.01.T01 MTR_3g098980 31.075 428 278 9 11 434 14 428 1.88e-70 230
MsG0180001620.01.T01 MTR_7g027175 34.204 383 240 8 16 393 21 396 1.42e-69 228
MsG0180001620.01.T01 MTR_8g039950 82.400 125 22 0 6 130 4 128 1.47e-69 217
MsG0180001620.01.T01 MTR_7g114500 57.047 149 64 0 5 153 4 152 1.47e-59 192
MsG0180001620.01.T01 MTR_3g051790 57.931 145 61 0 5 149 7 151 2.15e-53 177
MsG0180001620.01.T01 MTR_3g112180 32.216 388 237 10 19 393 20 394 1.03e-50 179
MsG0180001620.01.T01 MTR_1g053315 30.867 392 251 11 19 393 26 414 9.04e-49 174
MsG0180001620.01.T01 MTR_4g055170 28.604 437 295 9 18 439 19 453 3.45e-48 172
MsG0180001620.01.T01 MTR_8g075610 28.471 425 260 10 19 422 2 403 5.43e-42 154
MsG0180001620.01.T01 MTR_7g084940 27.845 413 261 10 7 401 12 405 8.56e-42 154
MsG0180001620.01.T01 MTR_2g105330 26.077 418 282 12 19 422 11 415 9.34e-39 145
MsG0180001620.01.T01 MTR_4g007540 27.208 419 279 12 18 422 10 416 3.90e-38 144
MsG0180001620.01.T01 MTR_7g110610 28.465 404 213 14 7 397 1 341 4.27e-38 143
MsG0180001620.01.T01 MTR_3g071320 29.381 388 256 11 19 393 13 395 4.48e-38 144
MsG0180001620.01.T01 MTR_7g084910 28.406 433 263 13 10 427 16 416 5.68e-38 144
MsG0180001620.01.T01 MTR_2g064495 25.837 418 283 12 19 422 11 415 3.61e-37 141
MsG0180001620.01.T01 MTR_3g026950 26.247 461 280 14 15 436 6 445 3.54e-35 136
MsG0180001620.01.T01 MTR_6g053810 26.450 431 262 15 46 441 52 462 3.85e-34 134
MsG0180001620.01.T01 MTR_3g465930 29.830 352 221 10 5 339 6 348 1.96e-33 132
MsG0180001620.01.T01 MTR_3g465990 29.412 357 219 11 18 353 17 361 2.54e-33 131
MsG0180001620.01.T01 MTR_2g015430 30.601 366 240 10 32 389 25 384 1.13e-32 129
MsG0180001620.01.T01 MTR_3g465910 29.674 337 214 9 18 339 17 345 4.83e-32 129
MsG0180001620.01.T01 MTR_4g127650 27.700 426 256 15 19 407 18 428 7.73e-32 127
MsG0180001620.01.T01 MTR_7g086000 26.914 405 253 14 19 388 12 408 2.31e-31 125
MsG0180001620.01.T01 MTR_7g056087 27.376 442 281 15 19 438 12 435 4.04e-31 124
MsG0180001620.01.T01 MTR_3g049150 25.612 449 286 13 19 436 10 441 7.73e-31 124
MsG0180001620.01.T01 MTR_3g465880 26.964 471 274 17 18 441 17 464 1.81e-30 123
MsG0180001620.01.T01 MTR_3g465980 29.268 369 226 13 6 353 7 361 3.20e-30 122
MsG0180001620.01.T01 MTR_3g465950 30.056 356 215 13 5 339 6 348 2.54e-28 117
MsG0180001620.01.T01 MTR_7g085930 24.703 421 259 11 19 394 14 421 9.05e-28 115
MsG0180001620.01.T01 MTR_4g097090 25.682 440 275 15 18 422 16 438 1.31e-26 112
MsG0180001620.01.T01 MTR_5g084870 25.000 428 266 15 17 421 9 404 2.61e-26 111
MsG0180001620.01.T01 MTR_5g090810 27.295 403 227 15 63 429 63 435 4.07e-26 110
MsG0180001620.01.T01 MTR_5g090830 27.543 403 226 15 63 429 63 435 4.69e-26 110
MsG0180001620.01.T01 MTR_4g013050 24.083 436 241 16 21 415 14 400 7.19e-26 109
MsG0180001620.01.T01 MTR_7g085990 24.703 421 259 13 19 394 10 417 1.93e-25 108
MsG0180001620.01.T01 MTR_4g088765 63.158 76 26 1 7 80 5 80 1.08e-24 99.0
MsG0180001620.01.T01 MTR_5g090880 27.340 406 224 17 63 429 64 437 1.10e-24 106
MsG0180001620.01.T01 MTR_4g094842 25.616 406 252 15 25 401 28 412 2.56e-23 102
MsG0180001620.01.T01 MTR_8g041770 26.108 406 258 14 16 401 22 405 5.01e-23 101
MsG0180001620.01.T01 MTR_3g070170 24.703 421 260 14 55 434 55 459 1.21e-22 100
MsG0180001620.01.T01 MTR_3g450690 26.977 430 234 16 66 451 72 465 1.37e-22 100
MsG0180001620.01.T01 MTR_3g450710 26.402 428 236 16 66 448 65 458 1.42e-22 100
MsG0180001620.01.T01 MTR_8g079950 23.128 454 297 14 17 447 9 433 4.12e-22 99.0
MsG0180001620.01.T01 MTR_3g465870 29.333 300 183 10 5 285 6 295 4.13e-22 98.6
MsG0180001620.01.T01 MTR_5g084850 24.433 397 248 13 17 390 9 376 8.76e-22 97.8
MsG0180001620.01.T01 MTR_8g079970 24.747 396 255 12 17 390 9 383 3.54e-21 95.9
MsG0180001620.01.T01 MTR_0190s0020 25.253 396 232 13 25 389 30 392 3.58e-20 93.2
MsG0180001620.01.T01 MTR_4g094828 24.742 388 249 15 26 389 31 399 4.25e-20 92.8
MsG0180001620.01.T01 MTR_4g094838 23.267 404 255 12 25 405 29 400 5.27e-20 92.4
MsG0180001620.01.T01 MTR_3g086020 24.490 392 251 14 15 392 9 369 5.82e-20 92.0
MsG0180001620.01.T01 MTR_5g084900 22.961 331 210 12 66 390 9 300 4.19e-19 89.0
MsG0180001620.01.T01 MTR_5g026320 25.641 390 248 15 24 391 33 402 1.02e-17 85.9
MsG0180001620.01.T01 MTR_4g022800 25.290 431 273 16 25 432 25 429 1.11e-17 85.5
MsG0180001620.01.T01 MTR_3g101960 27.397 292 190 11 63 341 65 347 1.50e-17 85.1
MsG0180001620.01.T01 MTR_3g101900 25.137 366 230 14 63 401 63 411 2.18e-17 84.7
MsG0180001620.01.T01 MTR_7g026860 25.701 428 271 18 25 432 25 425 2.70e-17 84.3
MsG0180001620.01.T01 MTR_8g079710 25.173 433 269 17 25 432 30 432 5.09e-17 83.6
MsG0180001620.01.T01 MTR_3g101930 25.688 436 268 22 11 407 7 425 6.93e-17 83.2
MsG0180001620.01.T01 MTR_7g114417 61.818 55 20 1 88 141 26 80 3.58e-16 73.9
MsG0180001620.01.T01 MTR_8g079980 25.448 279 174 11 17 280 9 268 4.23e-15 77.4
MsG0180001620.01.T01 MTR_3g088420 24.103 390 242 17 25 389 25 385 1.42e-14 75.9
MsG0180001620.01.T01 MTR_3g102020 24.496 347 228 13 18 341 13 348 1.73e-14 75.9
MsG0180001620.01.T01 MTR_2g007880 26.038 265 161 12 19 272 25 265 3.09e-14 75.1
MsG0180001620.01.T01 MTR_4g022670 26.020 392 240 19 25 389 25 393 3.32e-14 74.7
MsG0180001620.01.T01 MTR_3g049140 31.410 156 88 5 253 392 48 200 1.91e-13 70.5
MsG0180001620.01.T01 MTR_4g022760 27.302 315 200 11 25 325 25 324 2.48e-13 72.0
MsG0180001620.01.T01 MTR_3g026310 24.250 400 244 18 25 389 25 400 3.32e-13 71.6
MsG0180001620.01.T01 MTR_6g016815 31.977 172 101 7 32 194 38 202 7.80e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001620.01.T01 AT5G17540 53.233 464 203 9 7 463 5 461 6.40e-162 466
MsG0180001620.01.T01 AT3G03480 50.794 441 206 8 7 442 15 449 1.64e-146 426
MsG0180001620.01.T01 AT5G41040 33.753 397 239 10 9 393 15 399 5.79e-73 237
MsG0180001620.01.T01 AT5G41040 33.753 397 239 10 9 393 31 415 6.54e-73 237
MsG0180001620.01.T01 AT5G63560 32.821 390 242 9 11 393 9 385 9.01e-66 218
MsG0180001620.01.T01 AT3G48720 30.250 400 261 9 3 394 1 390 1.77e-64 214
MsG0180001620.01.T01 AT1G27620 28.315 445 292 11 12 448 10 435 9.07e-51 178
MsG0180001620.01.T01 AT1G03390 31.566 396 243 13 18 393 24 411 1.55e-45 165
MsG0180001620.01.T01 AT3G62160 28.678 401 254 10 7 396 1 380 5.03e-42 154
MsG0180001620.01.T01 AT2G40230 31.552 393 235 14 19 392 13 390 4.88e-41 152
MsG0180001620.01.T01 AT1G65450 28.381 451 289 13 9 442 16 449 1.21e-40 151
MsG0180001620.01.T01 AT5G07080 29.710 414 242 15 5 389 10 403 1.84e-39 148
MsG0180001620.01.T01 AT1G28680 29.058 382 256 11 18 389 11 387 2.33e-39 148
MsG0180001620.01.T01 AT5G48930 27.563 439 283 14 19 438 11 433 5.01e-39 146
MsG0180001620.01.T01 AT2G19070 27.974 454 268 16 4 422 1 430 1.73e-37 142
MsG0180001620.01.T01 AT3G47170 25.738 474 295 15 9 442 10 466 4.28e-36 139
MsG0180001620.01.T01 AT1G28680 28.933 356 239 10 18 364 11 361 2.31e-35 135
MsG0180001620.01.T01 AT5G57840 26.202 416 268 12 9 399 1 402 3.57e-35 136
MsG0180001620.01.T01 AT2G25150 27.578 446 294 13 17 443 19 454 2.70e-34 134
MsG0180001620.01.T01 AT1G32910 29.716 387 220 16 64 427 63 420 6.81e-29 119
MsG0180001620.01.T01 AT2G23510 26.623 462 284 19 11 441 13 450 1.28e-28 117
MsG0180001620.01.T01 AT1G78990 27.949 390 228 13 64 433 65 421 2.62e-28 117
MsG0180001620.01.T01 AT1G31490 25.490 408 256 15 8 391 3 386 2.46e-27 114
MsG0180001620.01.T01 AT3G26040 24.439 401 252 15 17 392 9 383 6.46e-21 95.5
MsG0180001620.01.T01 AT1G24420 25.272 459 283 17 17 450 11 434 7.59e-21 95.1
MsG0180001620.01.T01 AT1G24420 25.272 459 283 17 17 450 11 434 7.59e-21 95.1
MsG0180001620.01.T01 AT4G31910 26.494 385 246 11 66 422 64 439 1.13e-20 94.7
MsG0180001620.01.T01 AT4G15390 23.060 451 304 14 4 434 1 428 1.69e-20 94.0
MsG0180001620.01.T01 AT4G15390 23.060 451 304 14 4 434 1 428 1.69e-20 94.0
MsG0180001620.01.T01 AT1G24430 23.348 454 278 15 9 434 3 414 3.25e-20 93.2
MsG0180001620.01.T01 AT1G65450 26.756 299 190 9 159 442 1 285 6.83e-20 90.1
MsG0180001620.01.T01 AT5G16410 27.424 361 203 15 64 392 89 422 3.61e-19 90.5
MsG0180001620.01.T01 AT5G23970 23.644 461 280 17 9 442 1 416 1.25e-18 88.2
MsG0180001620.01.T01 AT5G42830 27.401 354 220 14 17 352 23 357 5.36e-18 86.7
MsG0180001620.01.T01 AT5G07850 24.651 430 278 17 3 405 10 420 1.64e-17 85.1
MsG0180001620.01.T01 AT3G30280 23.399 406 267 16 8 390 3 387 3.45e-17 84.0
MsG0180001620.01.T01 AT5G07870 25.203 369 234 13 66 403 72 429 3.94e-17 84.0
MsG0180001620.01.T01 AT3G50280 24.816 407 249 19 25 401 28 407 1.68e-16 82.0
MsG0180001620.01.T01 AT5G07860 24.242 363 233 12 66 403 72 417 7.47e-16 80.1
MsG0180001620.01.T01 AT3G50270 25.556 360 235 13 66 401 62 412 1.61e-15 79.0
MsG0180001620.01.T01 AT5G47950 22.500 400 261 13 8 390 3 370 2.31e-15 78.2
MsG0180001620.01.T01 AT3G50300 25.000 360 235 15 66 401 59 407 1.46e-14 75.9
MsG0180001620.01.T01 AT3G23840 23.264 288 179 10 82 355 81 340 2.40e-11 65.9

Find 102 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCATTAGTTCATAATTA+TGG 0.174340 1:-24226879 None:intergenic
GGGTCTTTCCCTGCCATATT+TGG 0.199762 1:+24226707 None:intergenic
TTTGATGGTCTTACAAATTC+AGG 0.203685 1:+24226824 None:intergenic
GCATTCAATTGCGGATTTAA+TGG 0.207366 1:-24223501 MsG0180001620.01.T01:CDS
CACTCCATTGCTGCTTATTC+AGG 0.213055 1:-24226447 MsG0180001620.01.T01:intron
GTTCATCGCACTTTCTTCTT+TGG 0.231302 1:-24223845 MsG0180001620.01.T01:CDS
ACTTGATTTGGAAAATAAAA+TGG 0.232521 1:+24223275 None:intergenic
CAACACTAACCAGCCAATTA+AGG 0.244365 1:-24223210 MsG0180001620.01.T01:CDS
AACCTCTCCATGACTTGATT+TGG 0.258304 1:+24223263 None:intergenic
TTTAAATTCCTAAGTGCATT+AGG 0.276531 1:-24224022 MsG0180001620.01.T01:CDS
TCTCCTTTAGCATTTCTAAA+AGG 0.281731 1:+24223314 None:intergenic
TTTGATAGCGTAATCCTTCT+TGG 0.291601 1:+24226759 None:intergenic
TTACAACCATGATCCAAATA+TGG 0.304783 1:-24226720 MsG0180001620.01.T01:CDS
GGGTTTGAAAAGGTTGATTA+TGG 0.318509 1:-24223413 MsG0180001620.01.T01:CDS
ATCCATTTGCAGGTAGGTTA+AGG 0.320236 1:-24226637 MsG0180001620.01.T01:CDS
GCGATGAACCATGTTGTCTA+AGG 0.337861 1:+24223859 None:intergenic
GAGCTTCTTTATGATGTTCC+TGG 0.338760 1:-24226488 MsG0180001620.01.T01:CDS
GGAGAGGTTTGTTAAAGAAA+TGG 0.370240 1:-24223249 MsG0180001620.01.T01:CDS
TCCCTGCCATATTTGGATCA+TGG 0.380358 1:+24226714 None:intergenic
GATGTTACTCGTAAACAATT+TGG 0.403895 1:-24226545 MsG0180001620.01.T01:CDS
TCCATTTGCAGGTAGGTTAA+GGG 0.408126 1:-24226636 MsG0180001620.01.T01:CDS
CGAATTGCGGCTACCTCAAA+TGG 0.409443 1:+24223821 None:intergenic
GGAGCAGATGGTGATATTCC+TGG 0.411301 1:-24223356 MsG0180001620.01.T01:CDS
TGAAAAGGTTGATTATGGTT+GGG 0.414817 1:-24223408 MsG0180001620.01.T01:CDS
AGCTCACCTATGCAAGGAAA+TGG 0.416452 1:+24226506 None:intergenic
GAAAAGGTTGATTATGGTTG+GGG 0.423234 1:-24223407 MsG0180001620.01.T01:CDS
CAATTACCGAAAGGTTACTA+TGG 0.424722 1:-24223641 MsG0180001620.01.T01:CDS
TTTCTTCTTTGGTCCATTTG+AGG 0.425969 1:-24223834 MsG0180001620.01.T01:CDS
CTGATGAGTCGCTAATTGTA+TGG 0.429753 1:+24224050 None:intergenic
AGTAACCTTTCGGTAATTGT+AGG 0.436747 1:+24223645 None:intergenic
TCCCTTAACCTACCTGCAAA+TGG 0.437418 1:+24226635 None:intergenic
AGGTCGTAGTAGGAAACTTA+TGG 0.438383 1:-24226612 MsG0180001620.01.T01:CDS
CAATTGAATGCATGTACTCT+TGG 0.439437 1:+24223513 None:intergenic
GCATTACCATAGTAACCTTT+CGG 0.443158 1:+24223635 None:intergenic
TTGAAAAGGTTGATTATGGT+TGG 0.458751 1:-24223409 MsG0180001620.01.T01:CDS
GGTTAAGGGAAGGTCGTAGT+AGG 0.459740 1:-24226622 MsG0180001620.01.T01:CDS
AACACTAACCAGCCAATTAA+GGG 0.461460 1:-24223209 MsG0180001620.01.T01:CDS
AACCATGATCCAAATATGGC+AGG 0.480651 1:-24226716 MsG0180001620.01.T01:CDS
AGAAATGCTAAAGGAGAGGA+AGG 0.482916 1:-24223308 MsG0180001620.01.T01:CDS
TCCGCTATGGTAACAACCGC+TGG 0.484808 1:-24223602 MsG0180001620.01.T01:CDS
CACCACACTGGTAAGATTGA+AGG 0.490557 1:+24223974 None:intergenic
CATCCTCCATTTCCTTGCAT+AGG 0.494853 1:-24226512 MsG0180001620.01.T01:CDS
TTGATGGTCTTACAAATTCA+GGG 0.497631 1:+24226825 None:intergenic
GTGTGTTGTTGTAGTGGGTG+AGG 0.498441 1:+24223785 None:intergenic
CTAGCTGGTCCTCCATAGAC+AGG 0.501542 1:+24223380 None:intergenic
TGTCACATCAGAAACAAGAT+AGG 0.502575 1:+24223442 None:intergenic
TCACCATCTGCTCCTCTAGC+TGG 0.502594 1:+24223365 None:intergenic
CATACAATTAGCGACTCATC+AGG 0.502928 1:-24224049 MsG0180001620.01.T01:CDS
TGCTTCATTTGTGTAGTCGA+TGG 0.503308 1:-24223686 MsG0180001620.01.T01:CDS
AAGTTAGTGTGTTGTTGTAG+TGG 0.506667 1:+24223779 None:intergenic
CATGTTGTCTAAGGGAATGA+TGG 0.510614 1:+24223868 None:intergenic
ATATTTCTCCTAATGCACTT+AGG 0.531478 1:+24224014 None:intergenic
GCGGATTTAATGGTTATCAA+AGG 0.531961 1:-24223491 MsG0180001620.01.T01:CDS
TCAGATATTGATGACCAAGA+AGG 0.533244 1:-24226773 MsG0180001620.01.T01:CDS
GGACCAGCTAGAGGAGCAGA+TGG 0.534164 1:-24223368 MsG0180001620.01.T01:CDS
TGAAGGTTCGTTCATCCCAC+AGG 0.537261 1:+24223991 None:intergenic
ATGGTTGATTGTAATGATGA+AGG 0.540421 1:-24226593 MsG0180001620.01.T01:CDS
CAATGAAGAAACAATGATAC+CGG 0.542175 1:+24223175 None:intergenic
AAATTCAACACGTACGCCAA+TGG 0.551645 1:+24223563 None:intergenic
ACCATGATCCAAATATGGCA+GGG 0.552266 1:-24226715 MsG0180001620.01.T01:CDS
CTCTTCACTTTGAATACTAG+AGG 0.553999 1:+24226854 None:intergenic
TCTAGTATTCAAAGTGAAGA+GGG 0.555943 1:-24226852 MsG0180001620.01.T01:CDS
AATTGAATGCATGTACTCTT+GGG 0.555973 1:+24223514 None:intergenic
CATCATTCCCTTAGACAACA+TGG 0.559575 1:-24223867 MsG0180001620.01.T01:CDS
AGTTAGTGTGTTGTTGTAGT+GGG 0.563985 1:+24223780 None:intergenic
GACACGAGGTGGGTTTGAAA+AGG 0.568417 1:-24223423 MsG0180001620.01.T01:CDS
GGATGAGTACACGTAACTCT+TGG 0.568956 1:+24223923 None:intergenic
TGCTTTAGCAAACTCCGCTA+TGG 0.570131 1:-24223615 MsG0180001620.01.T01:CDS
CGATGAACCATGTTGTCTAA+GGG 0.570400 1:+24223860 None:intergenic
TATACCTGAATAAGCAGCAA+TGG 0.570438 1:+24226443 None:intergenic
TTTACTATCCATTTGCAGGT+AGG 0.573968 1:-24226643 MsG0180001620.01.T01:CDS
GTAGAGAGCTTCTAAATGCA+AGG 0.574645 1:-24223952 MsG0180001620.01.T01:CDS
TCTTCACTTTGAATACTAGA+GGG 0.576823 1:+24226855 None:intergenic
TGAGTACACGTAACTCTTGG+TGG 0.577839 1:+24223926 None:intergenic
TTCCAAATCAAGTCATGGAG+AGG 0.578241 1:-24223265 MsG0180001620.01.T01:CDS
GTTGTAGTGGGTGAGGTGGA+AGG 0.581666 1:+24223792 None:intergenic
TGTTGTTGTAGTGGGTGAGG+TGG 0.584864 1:+24223788 None:intergenic
CTCTAGTATTCAAAGTGAAG+AGG 0.595938 1:-24226853 MsG0180001620.01.T01:CDS
ATATGAAAGCTAGCAAGACC+AGG 0.605331 1:+24223338 None:intergenic
TAAAGAAGCTCACCTATGCA+AGG 0.609622 1:+24226500 None:intergenic
GTTTCTGATGTGACACGAGG+TGG 0.612172 1:-24223434 MsG0180001620.01.T01:CDS
TCACCTATGCAAGGAAATGG+AGG 0.621651 1:+24226509 None:intergenic
TGATGGTCTTACAAATTCAG+GGG 0.623986 1:+24226826 None:intergenic
TGGAAGGAGAGAACGAATTG+CGG 0.626511 1:+24223808 None:intergenic
TTTCTGATGTGACACGAGGT+GGG 0.633105 1:-24223433 MsG0180001620.01.T01:CDS
GTCTATGGAGGACCAGCTAG+AGG 0.634408 1:-24223377 MsG0180001620.01.T01:CDS
AAAAGGTTGATTATGGTTGG+GGG 0.639328 1:-24223406 MsG0180001620.01.T01:CDS
TGCTAAAGGAGAGGAAGGTG+TGG 0.641357 1:-24223303 MsG0180001620.01.T01:CDS
CAGGTAACGCGTCTCAAGTG+TGG 0.645211 1:-24224100 MsG0180001620.01.T01:CDS
GCATTAGGAGAAATATCCTG+TGG 0.648009 1:-24224007 MsG0180001620.01.T01:CDS
TTTGCAGGTAGGTTAAGGGA+AGG 0.651163 1:-24226632 MsG0180001620.01.T01:CDS
CTTCACTTTGAATACTAGAG+GGG 0.651323 1:+24226856 None:intergenic
CTTGTTTCTGATGTGACACG+AGG 0.651443 1:-24223437 MsG0180001620.01.T01:CDS
GTAACGCGTCTCAAGTGTGG+TGG 0.658588 1:-24224097 MsG0180001620.01.T01:CDS
CATTAGGAGAAATATCCTGT+GGG 0.660150 1:-24224006 MsG0180001620.01.T01:CDS
GTTAACCTACAATTACCGAA+AGG 0.661517 1:-24223650 MsG0180001620.01.T01:CDS
AGAGTACATGCATTCAATTG+CGG 0.662323 1:-24223510 MsG0180001620.01.T01:CDS
TCCAGCGGTTGTTACCATAG+CGG 0.667032 1:+24223601 None:intergenic
TTAAGCACTTCTGAAGAACC+AGG 0.667440 1:+24226470 None:intergenic
AGAAGCTCTCTACACCACAC+TGG 0.677743 1:+24223962 None:intergenic
CTAGTATTCAAAGTGAAGAG+GGG 0.696184 1:-24226851 MsG0180001620.01.T01:CDS
AACCTTCAATCTTACCAGTG+TGG 0.710213 1:-24223976 MsG0180001620.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAATTACAAAAAATAT+AGG + Chr1:24224668-24224687 None:intergenic 10.0%
!! AACTAATTACAAAAAATATA+GGG + Chr1:24224667-24224686 None:intergenic 10.0%
!! TAGTATTAATAAATATATCT+AGG - Chr1:24224130-24224149 MsG0180001620.01.T01:intron 10.0%
!!! TTAAACAAGTTTTATATTAT+CGG - Chr1:24225856-24225875 MsG0180001620.01.T01:intron 10.0%
!! AAAACTTATTAAAAATCCAT+TGG - Chr1:24226462-24226481 MsG0180001620.01.T01:CDS 15.0%
!! ACTTATCTAATGTTAAAAAA+TGG - Chr1:24224445-24224464 MsG0180001620.01.T01:intron 15.0%
!! AGTTACAAAATAATTCAAAT+TGG + Chr1:24225668-24225687 None:intergenic 15.0%
!! ATCTTTAACCTAAAAAATAT+GGG + Chr1:24225478-24225497 None:intergenic 15.0%
!! CTTAACATTATAAACTAAAA+CGG - Chr1:24224541-24224560 MsG0180001620.01.T01:intron 15.0%
!! GTTACAAAATAATTCAAATT+GGG + Chr1:24225667-24225686 None:intergenic 15.0%
!! TTAACTGGAAATATATATAT+GGG + Chr1:24225602-24225621 None:intergenic 15.0%
!! TTTAAAAAAAATTGAATCGT+GGG - Chr1:24223764-24223783 MsG0180001620.01.T01:CDS 15.0%
!! TTTAACTGGAAATATATATA+TGG + Chr1:24225603-24225622 None:intergenic 15.0%
!!! AAAAATATTTCGTCAATTTT+TGG + Chr1:24224590-24224609 None:intergenic 15.0%
!!! AAAGTAATTTTATTTCATGA+GGG + Chr1:24223249-24223268 None:intergenic 15.0%
!!! AAATTGACGAAATATTTTTT+AGG - Chr1:24224591-24224610 MsG0180001620.01.T01:intron 15.0%
!!! AATTGACGAAATATTTTTTA+GGG - Chr1:24224592-24224611 MsG0180001620.01.T01:intron 15.0%
!!! AGGTTTTATTTTTATTTTGT+AGG + Chr1:24225566-24225585 None:intergenic 15.0%
!!! ATGGATAGATATTTTTTTTA+AGG + Chr1:24224278-24224297 None:intergenic 15.0%
!!! TATTTTTTTTAAGAAAGAGA+TGG + Chr1:24224297-24224316 None:intergenic 15.0%
!!! TTTTAAAAAAAATTGAATCG+TGG - Chr1:24223763-24223782 MsG0180001620.01.T01:CDS 15.0%
!! ATAAAAGATGCATTATAGTA+TGG - Chr1:24225812-24225831 MsG0180001620.01.T01:intron 20.0%
!! CGAGAAAAAAAAATCATATT+TGG - Chr1:24224208-24224227 MsG0180001620.01.T01:intron 20.0%
!! GATCTTTAACCTAAAAAATA+TGG + Chr1:24225479-24225498 None:intergenic 20.0%
!! TAATAAATATATCTAGGTGA+TGG - Chr1:24224136-24224155 MsG0180001620.01.T01:intron 20.0%
!!! AAAAATGGTAAATTTTTGTG+CGG - Chr1:24224460-24224479 MsG0180001620.01.T01:intron 20.0%
!!! AAATCATATTTGGAATATCA+TGG - Chr1:24224218-24224237 MsG0180001620.01.T01:intron 20.0%
!!! AAGTAATTTTATTTCATGAG+GGG + Chr1:24223248-24223267 None:intergenic 20.0%
!!! AATATGATTTTTTTTTCTCG+AGG + Chr1:24224208-24224227 None:intergenic 20.0%
!!! AATGATTCTAGCTTATATAT+GGG + Chr1:24225298-24225317 None:intergenic 20.0%
!!! ACATCTTGTTGTAAATAATT+TGG + Chr1:24225323-24225342 None:intergenic 20.0%
!!! ACTTGATTTGGAAAATAAAA+TGG + Chr1:24226769-24226788 None:intergenic 20.0%
!!! ATATGATTTTTTTTTCTCGA+GGG + Chr1:24224207-24224226 None:intergenic 20.0%
!!! ATTGACGAAATATTTTTTAG+GGG - Chr1:24224593-24224612 MsG0180001620.01.T01:intron 20.0%
!!! ATTTTTAATAAGTTTTCCAG+CGG + Chr1:24226458-24226477 None:intergenic 20.0%
!!! CATGCAATATTTTCTTTTAA+AGG - Chr1:24224564-24224583 MsG0180001620.01.T01:intron 20.0%
!!! CTTTTCTAATAATATCAACA+GGG + Chr1:24223357-24223376 None:intergenic 20.0%
!!! GAAAGTAATTTTATTTCATG+AGG + Chr1:24223250-24223269 None:intergenic 20.0%
!!! TAATGATTCTAGCTTATATA+TGG + Chr1:24225299-24225318 None:intergenic 20.0%
!!! TGAATATGAGTTTTTTTAAC+TGG + Chr1:24225617-24225636 None:intergenic 20.0%
! AAAAACATACATCTTGAATC+TGG - Chr1:24225353-24225372 MsG0180001620.01.T01:intron 25.0%
! ATATGGGATGAGTTAAATAT+AGG + Chr1:24225586-24225605 None:intergenic 25.0%
! ATATTAATTGCGTGAATATG+TGG - Chr1:24223852-24223871 MsG0180001620.01.T01:CDS 25.0%
! ATTAAGGGTGATAAAAAATC+CGG - Chr1:24226847-24226866 MsG0180001620.01.T01:CDS 25.0%
! CAATGTACGAATTATTGAAT+AGG + Chr1:24223690-24223709 None:intergenic 25.0%
! CTTCTGTTAGTTAACTTTAA+AGG - Chr1:24224688-24224707 MsG0180001620.01.T01:intron 25.0%
! TAATCTTTGGATTGTTATCT+TGG - Chr1:24223940-24223959 MsG0180001620.01.T01:CDS 25.0%
! TATTGTCAATCAAATGTCAT+AGG + Chr1:24225020-24225039 None:intergenic 25.0%
! TTTAAATTCCTAAGTGCATT+AGG - Chr1:24226019-24226038 MsG0180001620.01.T01:intron 25.0%
! TTTAACCTAAAAAATATGGG+TGG + Chr1:24225475-24225494 None:intergenic 25.0%
!! GATTTTACTACATTAAAGTG+AGG + Chr1:24226580-24226599 None:intergenic 25.0%
!! GCTTTTCTAATAATATCAAC+AGG + Chr1:24223358-24223377 None:intergenic 25.0%
!! TTATTTTCCAAATCAAGTCA+TGG - Chr1:24226771-24226790 MsG0180001620.01.T01:CDS 25.0%
!!! AAACAATAGTTGGTAGTTAT+AGG - Chr1:24224159-24224178 MsG0180001620.01.T01:intron 25.0%
!!! AACAATAGTTGGTAGTTATA+GGG - Chr1:24224160-24224179 MsG0180001620.01.T01:intron 25.0%
!!! ATACCTTTTAGAAATGCTAA+AGG - Chr1:24226724-24226743 MsG0180001620.01.T01:CDS 25.0%
!!! GATTTTTTATCACCCTTAAT+TGG + Chr1:24226847-24226866 None:intergenic 25.0%
!!! TATGATTTTTTTTTCTCGAG+GGG + Chr1:24224206-24224225 None:intergenic 25.0%
!!! TCATATTACGACTTTTTCAA+AGG - Chr1:24224960-24224979 MsG0180001620.01.T01:intron 25.0%
AATATTTCATCGAGGATCAT+TGG + Chr1:24223837-24223856 None:intergenic 30.0%
AATTGAATGCATGTACTCTT+GGG + Chr1:24226530-24226549 None:intergenic 30.0%
ACGCAATTAATATTTCATCG+AGG + Chr1:24223845-24223864 None:intergenic 30.0%
ATATTTCTCCTAATGCACTT+AGG + Chr1:24226030-24226049 None:intergenic 30.0%
ATGACGAAAATAGAACTTAG+AGG + Chr1:24223978-24223997 None:intergenic 30.0%
ATGGTTGATTGTAATGATGA+AGG - Chr1:24223448-24223467 MsG0180001620.01.T01:CDS 30.0%
ATTACACGATAACAGATGAT+TGG + Chr1:24225769-24225788 None:intergenic 30.0%
ATTGAAGCTTCTAACAAGAA+AGG + Chr1:24225204-24225223 None:intergenic 30.0%
CAATGAAGAAACAATGATAC+CGG + Chr1:24226869-24226888 None:intergenic 30.0%
CATTCATAAGTGTTTGATTG+TGG - Chr1:24225641-24225660 MsG0180001620.01.T01:intron 30.0%
CTTTGTCCTAATAATTGCAT+CGG + Chr1:24225179-24225198 None:intergenic 30.0%
GATGTTACTCGTAAACAATT+TGG - Chr1:24223496-24223515 MsG0180001620.01.T01:CDS 30.0%
TAACTAACACCTAATGCTAA+TGG + Chr1:24225450-24225469 None:intergenic 30.0%
TCATACACCTTTATTGGATT+CGG + Chr1:24225405-24225424 None:intergenic 30.0%
TCTAGTATTCAAAGTGAAGA+GGG - Chr1:24223189-24223208 MsG0180001620.01.T01:CDS 30.0%
TCTCACACTATACATGTTAT+CGG - Chr1:24223631-24223650 MsG0180001620.01.T01:CDS 30.0%
TCTCCTTTAGCATTTCTAAA+AGG + Chr1:24226730-24226749 None:intergenic 30.0%
TCTTCACTTTGAATACTAGA+GGG + Chr1:24223189-24223208 None:intergenic 30.0%
TTACAACCATGATCCAAATA+TGG - Chr1:24223321-24223340 MsG0180001620.01.T01:CDS 30.0%
! AAATCATCTCTGCATTTTGT+TGG - Chr1:24226287-24226306 MsG0180001620.01.T01:intron 30.0%
! AGTTCAAAGACTTCTTTTTG+AGG - Chr1:24224817-24224836 MsG0180001620.01.T01:intron 30.0%
! GAAAAAGTACGTCAAAACAA+AGG - Chr1:24226148-24226167 MsG0180001620.01.T01:intron 30.0%
! TCAAGTTGTGGAATAATCTT+TGG - Chr1:24223927-24223946 MsG0180001620.01.T01:CDS 30.0%
! TGAAAAGGTTGATTATGGTT+GGG - Chr1:24226633-24226652 MsG0180001620.01.T01:CDS 30.0%
! TTGAAAAGGTTGATTATGGT+TGG - Chr1:24226632-24226651 MsG0180001620.01.T01:CDS 30.0%
! TTGATGGTCTTACAAATTCA+GGG + Chr1:24223219-24223238 None:intergenic 30.0%
! TTGGATTGTTATCTTGGTTT+TGG - Chr1:24223946-24223965 MsG0180001620.01.T01:CDS 30.0%
! TTTGATGGTCTTACAAATTC+AGG + Chr1:24223220-24223239 None:intergenic 30.0%
!! AATTTTATTTCATGAGGGGT+TGG + Chr1:24223244-24223263 None:intergenic 30.0%
!! CCAAAATGCTTTAAGATTTG+CGG + Chr1:24224043-24224062 None:intergenic 30.0%
!! TTTTAGAAATGCTAAAGGAG+AGG - Chr1:24226729-24226748 MsG0180001620.01.T01:CDS 30.0%
!!! AAGCATTTTGGTTCATGATA+TGG - Chr1:24224052-24224071 MsG0180001620.01.T01:CDS 30.0%
!!! TTACTCCACCCATATTTTTT+AGG - Chr1:24225467-24225486 MsG0180001620.01.T01:intron 30.0%
!!! TTGACGTACTTTTTCATACT+CGG + Chr1:24226143-24226162 None:intergenic 30.0%
AACACTAACCAGCCAATTAA+GGG - Chr1:24226832-24226851 MsG0180001620.01.T01:CDS 35.0%
AACCTTCAATAGTATGACTG+CGG + Chr1:24224389-24224408 None:intergenic 35.0%
AATGCTAATGGTTGAGAGAA+TGG + Chr1:24225438-24225457 None:intergenic 35.0%
AGAGTACATGCATTCAATTG+CGG - Chr1:24226531-24226550 MsG0180001620.01.T01:CDS 35.0%
AGTAACCTTTCGGTAATTGT+AGG + Chr1:24226399-24226418 None:intergenic 35.0%
AGTGCTTCATACACCTTTAT+TGG + Chr1:24225411-24225430 None:intergenic 35.0%
ATGTAACTATAACCATGTGC+AGG - Chr1:24225922-24225941 MsG0180001620.01.T01:intron 35.0%
CAATTACCGAAAGGTTACTA+TGG - Chr1:24226400-24226419 MsG0180001620.01.T01:intron 35.0%
CAATTGAATGCATGTACTCT+TGG + Chr1:24226531-24226550 None:intergenic 35.0%
CATTAGGAGAAATATCCTGT+GGG - Chr1:24226035-24226054 MsG0180001620.01.T01:intron 35.0%
CTAGTATTCAAAGTGAAGAG+GGG - Chr1:24223190-24223209 MsG0180001620.01.T01:CDS 35.0%
CTCTAGTATTCAAAGTGAAG+AGG - Chr1:24223188-24223207 MsG0180001620.01.T01:CDS 35.0%
CTCTTCACTTTGAATACTAG+AGG + Chr1:24223190-24223209 None:intergenic 35.0%
CTTCACTTTGAATACTAGAG+GGG + Chr1:24223188-24223207 None:intergenic 35.0%
GATTATTCCACAACTTGAGA+TGG + Chr1:24223925-24223944 None:intergenic 35.0%
GCATTACCATAGTAACCTTT+CGG + Chr1:24226409-24226428 None:intergenic 35.0%
GCATTCAATTGCGGATTTAA+TGG - Chr1:24226540-24226559 MsG0180001620.01.T01:CDS 35.0%
GCGGATTTAATGGTTATCAA+AGG - Chr1:24226550-24226569 MsG0180001620.01.T01:CDS 35.0%
GTTAACCTACAATTACCGAA+AGG - Chr1:24226391-24226410 MsG0180001620.01.T01:intron 35.0%
GTTAGAAGCTTCAATCTAGT+TGG - Chr1:24225209-24225228 MsG0180001620.01.T01:intron 35.0%
TATACCTGAATAAGCAGCAA+TGG + Chr1:24223601-24223620 None:intergenic 35.0%
TGTCACATCAGAAACAAGAT+AGG + Chr1:24226602-24226621 None:intergenic 35.0%
TTCTCTCAACCATTAGCATT+AGG - Chr1:24225438-24225457 MsG0180001620.01.T01:intron 35.0%
TTGAGGAAGACTCAATTTGT+TGG + Chr1:24225382-24225401 None:intergenic 35.0%
TTTACTATCCATTTGCAGGT+AGG - Chr1:24223398-24223417 MsG0180001620.01.T01:CDS 35.0%
TTTCTTCTTTGGTCCATTTG+AGG - Chr1:24226207-24226226 MsG0180001620.01.T01:intron 35.0%
! AAAAGGTTGATTATGGTTGG+GGG - Chr1:24226635-24226654 MsG0180001620.01.T01:CDS 35.0%
! AAGTTAGTGTGTTGTTGTAG+TGG + Chr1:24226265-24226284 None:intergenic 35.0%
! AGTTAGTGTGTTGTTGTAGT+GGG + Chr1:24226264-24226283 None:intergenic 35.0%
! GAAAAGGTTGATTATGGTTG+GGG - Chr1:24226634-24226653 MsG0180001620.01.T01:CDS 35.0%
! GGGTTTGAAAAGGTTGATTA+TGG - Chr1:24226628-24226647 MsG0180001620.01.T01:CDS 35.0%
! GTGTTTTACTATCCATTTGC+AGG - Chr1:24223394-24223413 MsG0180001620.01.T01:CDS 35.0%
! TATAGGGTGTCATCATAGTT+GGG - Chr1:24224176-24224195 MsG0180001620.01.T01:intron 35.0%
! TCAGATATTGATGACCAAGA+AGG - Chr1:24223268-24223287 MsG0180001620.01.T01:CDS 35.0%
! TGATGGTCTTACAAATTCAG+GGG + Chr1:24223218-24223237 None:intergenic 35.0%
! TTATAGGGTGTCATCATAGT+TGG - Chr1:24224175-24224194 MsG0180001620.01.T01:intron 35.0%
! TTTTATCACCCTTAATTGGC+TGG + Chr1:24226843-24226862 None:intergenic 35.0%
!! AGAGTGCTAAAAGCATCAAA+TGG + Chr1:24224247-24224266 None:intergenic 35.0%
!! CCGCAAATCTTAAAGCATTT+TGG - Chr1:24224040-24224059 MsG0180001620.01.T01:CDS 35.0%
!! CTAATAATTGCATCGGTTGT+GGG + Chr1:24225172-24225191 None:intergenic 35.0%
!! GACATCAACTCTAAAACTCA+AGG - Chr1:24224887-24224906 MsG0180001620.01.T01:intron 35.0%
!! GATTCTAGCTTATATATGGG+TGG + Chr1:24225295-24225314 None:intergenic 35.0%
!! GGAGAGGTTTGTTAAAGAAA+TGG - Chr1:24226792-24226811 MsG0180001620.01.T01:CDS 35.0%
!! TAGGTGATGGAAACAATAGT+TGG - Chr1:24224149-24224168 MsG0180001620.01.T01:intron 35.0%
!! TTTGATAGCGTAATCCTTCT+TGG + Chr1:24223285-24223304 None:intergenic 35.0%
!!! TGACGTACTTTTTCATACTC+GGG + Chr1:24226142-24226161 None:intergenic 35.0%
AAATTCAACACGTACGCCAA+TGG + Chr1:24226481-24226500 None:intergenic 40.0%
AACCATGATCCAAATATGGC+AGG - Chr1:24223325-24223344 MsG0180001620.01.T01:CDS 40.0%
AACCTCTCCATGACTTGATT+TGG + Chr1:24226781-24226800 None:intergenic 40.0%
AACCTTCAATCTTACCAGTG+TGG - Chr1:24226065-24226084 MsG0180001620.01.T01:intron 40.0%
AATTGCCGAAGCAAAATGGA+GGG + Chr1:24225117-24225136 None:intergenic 40.0%
ACCATGATCCAAATATGGCA+GGG - Chr1:24223326-24223345 MsG0180001620.01.T01:CDS 40.0%
AGAAATGCTAAAGGAGAGGA+AGG - Chr1:24226733-24226752 MsG0180001620.01.T01:CDS 40.0%
AGGTCGTAGTAGGAAACTTA+TGG - Chr1:24223429-24223448 MsG0180001620.01.T01:CDS 40.0%
ATATGAAAGCTAGCAAGACC+AGG + Chr1:24226706-24226725 None:intergenic 40.0%
ATCATCTGATCTCAGTCCAA+CGG + Chr1:24223717-24223736 None:intergenic 40.0%
ATCCATTTGCAGGTAGGTTA+AGG - Chr1:24223404-24223423 MsG0180001620.01.T01:CDS 40.0%
ATCCGCAGTCATACTATTGA+AGG - Chr1:24224384-24224403 MsG0180001620.01.T01:intron 40.0%
CAACACTAACCAGCCAATTA+AGG - Chr1:24226831-24226850 MsG0180001620.01.T01:CDS 40.0%
CACACTATACATGTTATCGG+AGG - Chr1:24223634-24223653 MsG0180001620.01.T01:CDS 40.0%
CATACAATTAGCGACTCATC+AGG - Chr1:24225992-24226011 MsG0180001620.01.T01:intron 40.0%
CATCATTCCCTTAGACAACA+TGG - Chr1:24226174-24226193 MsG0180001620.01.T01:intron 40.0%
CATGTTGTCTAAGGGAATGA+TGG + Chr1:24226176-24226195 None:intergenic 40.0%
CCACAACCGATGCAATTATT+AGG - Chr1:24225170-24225189 MsG0180001620.01.T01:intron 40.0%
CCACACATTATGACTGTTGA+CGG + Chr1:24225068-24225087 None:intergenic 40.0%
CGATGAACCATGTTGTCTAA+GGG + Chr1:24226184-24226203 None:intergenic 40.0%
CTGATGAGTCGCTAATTGTA+TGG + Chr1:24225994-24226013 None:intergenic 40.0%
GAGCTTCTTTATGATGTTCC+TGG - Chr1:24223553-24223572 MsG0180001620.01.T01:CDS 40.0%
GCATTAGGAGAAATATCCTG+TGG - Chr1:24226034-24226053 MsG0180001620.01.T01:intron 40.0%
GTAGAGAGCTTCTAAATGCA+AGG - Chr1:24226089-24226108 MsG0180001620.01.T01:intron 40.0%
GTTCATCGCACTTTCTTCTT+TGG - Chr1:24226196-24226215 MsG0180001620.01.T01:intron 40.0%
TAAAGAAGCTCACCTATGCA+AGG + Chr1:24223544-24223563 None:intergenic 40.0%
TCCATTTGCAGGTAGGTTAA+GGG - Chr1:24223405-24223424 MsG0180001620.01.T01:CDS 40.0%
TCCTCAACCGAATCCAATAA+AGG - Chr1:24225395-24225414 MsG0180001620.01.T01:intron 40.0%
TGCTTCATTTGTGTAGTCGA+TGG - Chr1:24226355-24226374 MsG0180001620.01.T01:intron 40.0%
TTCCAAATCAAGTCATGGAG+AGG - Chr1:24226776-24226795 MsG0180001620.01.T01:CDS 40.0%
! ACCTTTATTGGATTCGGTTG+AGG + Chr1:24225399-24225418 None:intergenic 40.0%
! ATTCGTACATTGATGACCGT+TGG - Chr1:24223698-24223717 MsG0180001620.01.T01:CDS 40.0%
! GATCTATCCATCTCAAGTTG+TGG - Chr1:24223915-24223934 MsG0180001620.01.T01:CDS 40.0%
! TCTAGCTTATATATGGGTGG+TGG + Chr1:24225292-24225311 None:intergenic 40.0%
! TTAAGCACTTCTGAAGAACC+AGG + Chr1:24223574-24223593 None:intergenic 40.0%
!! AGGAAGACTCAATTTGTTGG+TGG + Chr1:24225379-24225398 None:intergenic 40.0%
!! CCTAATAATTGCATCGGTTG+TGG + Chr1:24225173-24225192 None:intergenic 40.0%
!! TTTTTAGGGGACTAGAAGAG+AGG - Chr1:24224606-24224625 MsG0180001620.01.T01:intron 40.0%
AGCTCACCTATGCAAGGAAA+TGG + Chr1:24223538-24223557 None:intergenic 45.0%
CAATTGCCGAAGCAAAATGG+AGG + Chr1:24225118-24225137 None:intergenic 45.0%
CACCACACTGGTAAGATTGA+AGG + Chr1:24226070-24226089 None:intergenic 45.0%
CACGTGAAGTTCTTCACAAC+CGG - Chr1:24225254-24225273 MsG0180001620.01.T01:intron 45.0%
CATCCTCCATTTCCTTGCAT+AGG - Chr1:24223529-24223548 MsG0180001620.01.T01:CDS 45.0%
CCGTCAACAGTCATAATGTG+TGG - Chr1:24225065-24225084 MsG0180001620.01.T01:intron 45.0%
GAAGCAAAATGGAGGGCTTT+GGG + Chr1:24225110-24225129 None:intergenic 45.0%
GCGATGAACCATGTTGTCTA+AGG + Chr1:24226185-24226204 None:intergenic 45.0%
GGATGAGTACACGTAACTCT+TGG + Chr1:24226121-24226140 None:intergenic 45.0%
GGTTGTGAAGAACTTCACGT+GGG + Chr1:24225255-24225274 None:intergenic 45.0%
GTATGTGATGTTCATCGACG+TGG + Chr1:24224988-24225007 None:intergenic 45.0%
GTCCAATTGCCGAAGCAAAA+TGG + Chr1:24225121-24225140 None:intergenic 45.0%
GTTGTGAAGAACTTCACGTG+GGG + Chr1:24225254-24225273 None:intergenic 45.0%
TCACCTATGCAAGGAAATGG+AGG + Chr1:24223535-24223554 None:intergenic 45.0%
TCCCTGCCATATTTGGATCA+TGG + Chr1:24223330-24223349 None:intergenic 45.0%
TCCCTTAACCTACCTGCAAA+TGG + Chr1:24223409-24223428 None:intergenic 45.0%
TGAGTACACGTAACTCTTGG+TGG + Chr1:24226118-24226137 None:intergenic 45.0%
TGCTTTAGCAAACTCCGCTA+TGG - Chr1:24226426-24226445 MsG0180001620.01.T01:intron 45.0%
TGGAAGGAGAGAACGAATTG+CGG + Chr1:24226236-24226255 None:intergenic 45.0%
TTCTACTCACGAGTTAGCGA+GGG + Chr1:24224933-24224952 None:intergenic 45.0%
TTTCTACTCACGAGTTAGCG+AGG + Chr1:24224934-24224953 None:intergenic 45.0%
TTTCTGATGTGACACGAGGT+GGG - Chr1:24226608-24226627 MsG0180001620.01.T01:CDS 45.0%
TTTGCAGGTAGGTTAAGGGA+AGG - Chr1:24223409-24223428 MsG0180001620.01.T01:CDS 45.0%
! CAAAGCCCTCCATTTTGCTT+CGG - Chr1:24225109-24225128 MsG0180001620.01.T01:intron 45.0%
! CACTCCATTGCTGCTTATTC+AGG - Chr1:24223594-24223613 MsG0180001620.01.T01:CDS 45.0%
! CTCCATTTTGCTTCGGCAAT+TGG - Chr1:24225116-24225135 MsG0180001620.01.T01:intron 45.0%
! GCTTATATATGGGTGGTGGT+TGG + Chr1:24225288-24225307 None:intergenic 45.0%
!! CTTGTTTCTGATGTGACACG+AGG - Chr1:24226604-24226623 MsG0180001620.01.T01:CDS 45.0%
!!! TCATGAGGGGTTGGTTTTGA+TGG + Chr1:24223235-24223254 None:intergenic 45.0%
AGAAGCTCTCTACACCACAC+TGG + Chr1:24226082-24226101 None:intergenic 50.0%
CGAAGCAAAATGGAGGGCTT+TGG + Chr1:24225111-24225130 None:intergenic 50.0%
CGAATTGCGGCTACCTCAAA+TGG + Chr1:24226223-24226242 None:intergenic 50.0%
CGGTTGTGAAGAACTTCACG+TGG + Chr1:24225256-24225275 None:intergenic 50.0%
GGAGCAGATGGTGATATTCC+TGG - Chr1:24226685-24226704 MsG0180001620.01.T01:CDS 50.0%
GGGTCTTTCCCTGCCATATT+TGG + Chr1:24223337-24223356 None:intergenic 50.0%
GGTTAAGGGAAGGTCGTAGT+AGG - Chr1:24223419-24223438 MsG0180001620.01.T01:CDS 50.0%
GTGAAGTTCTTCACAACCGG+AGG - Chr1:24225257-24225276 MsG0180001620.01.T01:intron 50.0%
GTTTCTGATGTGACACGAGG+TGG - Chr1:24226607-24226626 MsG0180001620.01.T01:CDS 50.0%
TCCAGCGGTTGTTACCATAG+CGG + Chr1:24226443-24226462 None:intergenic 50.0%
TGAAGGTTCGTTCATCCCAC+AGG + Chr1:24226053-24226072 None:intergenic 50.0%
TGCTAAAGGAGAGGAAGGTG+TGG - Chr1:24226738-24226757 MsG0180001620.01.T01:CDS 50.0%
! GACACGAGGTGGGTTTGAAA+AGG - Chr1:24226618-24226637 MsG0180001620.01.T01:CDS 50.0%
!! GTGTGTTGTTGTAGTGGGTG+AGG + Chr1:24226259-24226278 None:intergenic 50.0%
!! TGGAGGGCTTTGGGTTTATG+AGG + Chr1:24225101-24225120 None:intergenic 50.0%
!! TGTTGTTGTAGTGGGTGAGG+TGG + Chr1:24226256-24226275 None:intergenic 50.0%
CAGGTAACGCGTCTCAAGTG+TGG - Chr1:24225941-24225960 MsG0180001620.01.T01:intron 55.0%
CTAGCTGGTCCTCCATAGAC+AGG + Chr1:24226664-24226683 None:intergenic 55.0%
GGTTGGGGGAAACCTGTCTA+TGG - Chr1:24226649-24226668 MsG0180001620.01.T01:CDS 55.0%
GTAACGCGTCTCAAGTGTGG+TGG - Chr1:24225944-24225963 MsG0180001620.01.T01:intron 55.0%
GTCTATGGAGGACCAGCTAG+AGG - Chr1:24226664-24226683 MsG0180001620.01.T01:CDS 55.0%
TCACCATCTGCTCCTCTAGC+TGG + Chr1:24226679-24226698 None:intergenic 55.0%
TCCGCTATGGTAACAACCGC+TGG - Chr1:24226439-24226458 MsG0180001620.01.T01:intron 55.0%
TGAGACGCGTTACCTGCACA+TGG + Chr1:24225937-24225956 None:intergenic 55.0%
TGGGGGAAACCTGTCTATGG+AGG - Chr1:24226652-24226671 MsG0180001620.01.T01:CDS 55.0%
!! GTTGTAGTGGGTGAGGTGGA+AGG + Chr1:24226252-24226271 None:intergenic 55.0%
GGACCAGCTAGAGGAGCAGA+TGG - Chr1:24226673-24226692 MsG0180001620.01.T01:CDS 60.0%
!! GTGGTGGTTGGAAGCACCTC+CGG + Chr1:24225276-24225295 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 24223172 24226891 24223172 ID=MsG0180001620.01;Name=MsG0180001620.01
Chr1 mRNA 24223172 24226891 24223172 ID=MsG0180001620.01.T01;Parent=MsG0180001620.01;Name=MsG0180001620.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|463
Chr1 exon 24226448 24226891 24226448 ID=MsG0180001620.01.T01:exon:40722;Parent=MsG0180001620.01.T01
Chr1 exon 24223172 24224119 24223172 ID=MsG0180001620.01.T01:exon:40721;Parent=MsG0180001620.01.T01
Chr1 CDS 24226448 24226891 24226448 ID=MsG0180001620.01.T01:cds;Parent=MsG0180001620.01.T01
Chr1 CDS 24223172 24224119 24223172 ID=MsG0180001620.01.T01:cds;Parent=MsG0180001620.01.T01
Gene Sequence

>MsG0180001620.01.T01

TTCATAATTATGGCCCCTCTAGTATTCAAAGTGAAGAGGGGTGCCCCTGAATTTGTAAGACCATCAAAACCAACCCCTCATGAAATAAAATTACTTTCAGATATTGATGACCAAGAAGGATTACGCTATCAAACTCGTTTGATACAATTTTACAACCATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTACTATCCATTTGCAGGTAGGTTAAGGGAAGGTCGTAGTAGGAAACTTATGGTTGATTGTAATGATGAAGGTGTTTTGTTTATTGAAGCTGATGCTGATGTTACTCGTAAACAATTTGGTGAAGATCTTCATCCTCCATTTCCTTGCATAGGTGAGCTTCTTTATGATGTTCCTGGTTCTTCAGAAGTGCTTAACACTCCATTGCTGCTTATTCAGGTAACGCGTCTCAAGTGTGGTGGTTTCATATTTGCTCTTCGTCTAAACCATACAATTAGCGACTCATCAGGTTTATTTAAATTCCTAAGTGCATTAGGAGAAATATCCTGTGGGATGAACGAACCTTCAATCTTACCAGTGTGGTGTAGAGAGCTTCTAAATGCAAGGAATCCACCAAGAGTTACGTGTACTCATCCCGAGTATGAAAAAGTACGTCAAAACAAAGGAACCATCATTCCCTTAGACAACATGGTTCATCGCACTTTCTTCTTTGGTCCATTTGAGGTAGCCGCAATTCGTTCTCTCCTTCCACCTCACCCACTACAACAACACACTAACTTTGAAATCATCTCTGCATTTTGTTGGCATTGTCGTACAATAGCATTACAACTAGATACTAACGAAGAAGTTTGCTTCATTTGTGTAGTCGATGGACGTAGTAAATCTGTTAACCTACAATTACCGAAAGGTTACTATGGTAATGCTTTAGCAAACTCCGCTATGGTAACAACCGCTGGAAAACTTATTAAAAATCCATTGGCGTACGTGTTGAATTTAGTTAAGAAAGCAAAAGCTAATGTCACCCAAGAGTACATGCATTCAATTGCGGATTTAATGGTTATCAAAGGTCGACCTCACTTTAATGTAGTAAAATCCTATCTTGTTTCTGATGTGACACGAGGTGGGTTTGAAAAGGTTGATTATGGTTGGGGGAAACCTGTCTATGGAGGACCAGCTAGAGGAGCAGATGGTGATATTCCTGGTCTTGCTAGCTTTCATATACCTTTTAGAAATGCTAAAGGAGAGGAAGGTGTGGTCATACCATTTTATTTTCCAAATCAAGTCATGGAGAGGTTTGTTAAAGAAATGGATAGTGTGCTTAAGAGCAACACTAACCAGCCAATTAAGGGTGATAAAAAATCCGGTATCATTGTTTCTTCATTGTAG
Protein sequence

>MsG0180001620.01.T01

FIIMAPLVFKVKRGAPEFVRPSKPTPHEIKLLSDIDDQEGLRYQTRLIQFYNHDPNMAGKDPVDIIRKALAKTLVFYYPFAGRLREGRSRKLMVDCNDEGVLFIEADADVTRKQFGEDLHPPFPCIGELLYDVPGSSEVLNTPLLLIQVTRLKCGGFIFALRLNHTISDSSGLFKFLSALGEISCGMNEPSILPVWCRELLNARNPPRVTCTHPEYEKVRQNKGTIIPLDNMVHRTFFFGPFEVAAIRSLLPPHPLQQHTNFEIISAFCWHCRTIALQLDTNEEVCFICVVDGRSKSVNLQLPKGYYGNALANSAMVTTAGKLIKNPLAYVLNLVKKAKANVTQEYMHSIADLMVIKGRPHFNVVKSYLVSDVTRGGFEKVDYGWGKPVYGGPARGADGDIPGLASFHIPFRNAKGEEGVVIPFYFPNQVMERFVKEMDSVLKSNTNQPIKGDKKSGIIVSSL*