AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001630.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001630.01.T01 MTR_1g040175 85.249 461 65 1 1 461 1 458 0.0 809
MsG0180001630.01.T01 MTR_1g040320 87.419 461 22 1 1 461 1 425 0.0 805
MsG0180001630.01.T01 MTR_1g040215 76.356 461 109 0 1 461 1 461 0.0 738
MsG0180001630.01.T01 MTR_1g040195 71.800 461 105 3 1 461 1 436 0.0 667
MsG0180001630.01.T01 MTR_1g040315 65.076 461 117 4 1 461 1 417 0.0 585
MsG0180001630.01.T01 MTR_7g114560 55.507 454 195 6 5 455 6 455 0.0 521
MsG0180001630.01.T01 MTR_7g114550 54.367 458 202 6 2 456 3 456 0.0 521
MsG0180001630.01.T01 MTR_7g114520 55.778 450 188 7 5 448 7 451 1.98e-180 513
MsG0180001630.01.T01 MTR_5g076700 55.066 454 196 6 5 454 6 455 1.33e-179 510
MsG0180001630.01.T01 MTR_7g114470 53.846 455 201 6 5 454 7 457 7.99e-175 498
MsG0180001630.01.T01 MTR_7g114490 54.398 432 189 5 5 432 6 433 8.32e-170 487
MsG0180001630.01.T01 MTR_1g081660 56.720 439 185 5 4 440 13 448 1.39e-169 484
MsG0180001630.01.T01 MTR_0042s0190 73.401 297 79 0 165 461 1 297 7.74e-162 459
MsG0180001630.01.T01 MTR_0042s0190 74.569 232 59 0 230 461 1 232 1.25e-123 359
MsG0180001630.01.T01 MTR_7g114510 51.466 307 139 6 147 448 8 309 1.10e-101 306
MsG0180001630.01.T01 MTR_0502s0010 57.438 242 95 4 100 337 1 238 1.23e-92 280
MsG0180001630.01.T01 MTR_3g035000 62.162 222 57 3 199 419 43 238 3.15e-85 264
MsG0180001630.01.T01 MTR_0042s0230 82.993 147 25 0 1 147 1 147 2.32e-82 251
MsG0180001630.01.T01 MTR_3g098980 32.867 429 269 10 9 432 14 428 3.43e-78 250
MsG0180001630.01.T01 MTR_7g114420 44.558 294 128 6 165 454 1 263 2.18e-77 243
MsG0180001630.01.T01 MTR_7g027175 33.097 423 265 10 13 430 20 429 3.08e-75 243
MsG0180001630.01.T01 MTR_8g096530 32.798 436 271 12 1 430 1 420 7.88e-75 242
MsG0180001630.01.T01 MTR_8g039950 79.688 128 26 0 1 128 1 128 2.21e-68 214
MsG0180001630.01.T01 MTR_7g114500 60.000 150 60 0 2 151 3 152 1.77e-62 200
MsG0180001630.01.T01 MTR_3g051790 61.074 149 58 0 2 150 6 154 1.40e-58 191
MsG0180001630.01.T01 MTR_3g112180 33.162 389 232 12 17 391 20 394 1.11e-54 189
MsG0180001630.01.T01 MTR_1g053315 30.023 443 286 12 17 440 26 463 1.69e-54 189
MsG0180001630.01.T01 MTR_4g055170 29.204 452 299 10 3 437 6 453 1.97e-54 189
MsG0180001630.01.T01 MTR_4g007540 30.516 426 270 12 9 420 3 416 1.20e-53 186
MsG0180001630.01.T01 MTR_8g075610 29.977 427 253 11 16 420 1 403 2.92e-52 182
MsG0180001630.01.T01 MTR_2g105330 28.864 440 287 12 9 436 3 428 1.01e-50 178
MsG0180001630.01.T01 MTR_2g064495 28.864 440 287 12 9 436 3 428 6.35e-50 176
MsG0180001630.01.T01 MTR_7g110610 30.529 416 220 13 5 411 1 356 2.27e-46 165
MsG0180001630.01.T01 MTR_3g071320 30.051 396 259 10 9 391 5 395 3.01e-46 166
MsG0180001630.01.T01 MTR_3g465990 29.362 470 283 17 3 439 4 457 3.89e-44 161
MsG0180001630.01.T01 MTR_7g084940 28.426 394 267 9 5 391 12 397 2.19e-43 159
MsG0180001630.01.T01 MTR_3g465930 28.017 464 293 14 7 439 8 461 3.00e-41 153
MsG0180001630.01.T01 MTR_3g465910 28.993 407 261 12 7 392 8 407 2.13e-40 152
MsG0180001630.01.T01 MTR_3g465980 29.130 460 285 16 9 439 10 457 2.44e-40 150
MsG0180001630.01.T01 MTR_7g085990 28.112 466 279 18 9 434 2 451 3.38e-40 150
MsG0180001630.01.T01 MTR_7g085930 28.066 424 257 15 9 392 6 421 3.39e-40 150
MsG0180001630.01.T01 MTR_7g086000 29.803 406 238 16 17 385 12 407 1.23e-39 149
MsG0180001630.01.T01 MTR_7g084910 27.708 397 246 11 8 391 16 384 2.04e-39 147
MsG0180001630.01.T01 MTR_6g053810 25.957 470 303 14 3 439 5 462 2.10e-39 148
MsG0180001630.01.T01 MTR_7g056087 28.315 445 271 16 16 434 11 433 2.86e-39 147
MsG0180001630.01.T01 MTR_2g015430 30.155 388 257 10 9 387 2 384 1.83e-38 145
MsG0180001630.01.T01 MTR_3g026950 26.961 408 258 10 17 392 10 409 4.15e-38 144
MsG0180001630.01.T01 MTR_4g127650 27.295 414 264 12 8 392 9 414 2.66e-37 142
MsG0180001630.01.T01 MTR_3g465950 29.016 386 252 11 7 378 8 385 1.02e-35 138
MsG0180001630.01.T01 MTR_3g465880 27.660 470 290 16 7 439 8 464 1.82e-34 134
MsG0180001630.01.T01 MTR_3g049150 26.980 404 255 12 17 390 10 403 1.99e-33 131
MsG0180001630.01.T01 MTR_4g097090 26.959 434 275 14 17 420 17 438 3.72e-33 130
MsG0180001630.01.T01 MTR_4g088765 78.082 73 16 0 1 73 1 73 5.24e-32 118
MsG0180001630.01.T01 MTR_4g013050 25.629 437 254 16 17 430 12 400 8.12e-31 123
MsG0180001630.01.T01 MTR_5g090830 26.683 401 232 14 61 427 63 435 2.25e-29 120
MsG0180001630.01.T01 MTR_5g090810 26.434 401 233 14 61 427 63 435 1.11e-28 118
MsG0180001630.01.T01 MTR_3g465870 29.452 292 189 9 5 283 8 295 6.78e-27 112
MsG0180001630.01.T01 MTR_5g090880 26.119 402 234 15 61 427 64 437 6.14e-26 110
MsG0180001630.01.T01 MTR_1g094790 26.411 443 257 20 15 419 9 420 2.40e-25 108
MsG0180001630.01.T01 MTR_5g084870 24.250 400 246 15 15 388 9 377 8.48e-25 106
MsG0180001630.01.T01 MTR_3g450710 26.316 437 235 18 64 454 65 460 9.42e-25 107
MsG0180001630.01.T01 MTR_3g450690 25.814 430 243 17 64 454 72 464 1.12e-23 103
MsG0180001630.01.T01 MTR_3g070170 26.573 429 242 16 53 432 55 459 1.47e-23 103
MsG0180001630.01.T01 MTR_8g467590 24.757 412 273 15 15 405 9 404 7.16e-23 101
MsG0180001630.01.T01 MTR_3g086020 24.433 397 241 15 15 390 11 369 5.49e-22 98.2
MsG0180001630.01.T01 MTR_4g094842 26.098 387 231 16 48 399 46 412 9.17e-21 94.7
MsG0180001630.01.T01 MTR_8g041770 25.753 365 237 14 49 395 49 397 1.27e-20 94.4
MsG0180001630.01.T01 MTR_8g467580 24.634 410 276 15 15 405 9 404 2.76e-20 93.6
MsG0180001630.01.T01 MTR_4g094828 24.257 404 271 13 51 432 49 439 2.87e-20 93.2
MsG0180001630.01.T01 MTR_8g079970 23.020 404 252 11 15 388 9 383 8.22e-20 92.0
MsG0180001630.01.T01 MTR_5g084850 22.277 404 248 13 15 388 9 376 1.85e-19 90.9
MsG0180001630.01.T01 MTR_8g079950 33.333 180 102 6 15 187 9 177 4.89e-19 89.7
MsG0180001630.01.T01 MTR_8g079710 25.833 360 221 15 57 387 52 394 4.49e-18 86.7
MsG0180001630.01.T01 MTR_3g101930 26.446 363 223 15 64 397 70 417 5.37e-18 86.7
MsG0180001630.01.T01 MTR_8g079980 26.523 279 171 10 15 278 9 268 6.45e-18 86.3
MsG0180001630.01.T01 MTR_5g084900 22.156 334 215 11 61 388 6 300 8.68e-18 85.1
MsG0180001630.01.T01 MTR_7g026860 26.108 406 259 18 48 432 42 427 2.71e-17 84.3
MsG0180001630.01.T01 MTR_4g094838 22.162 370 239 12 53 399 53 396 1.25e-16 82.0
MsG0180001630.01.T01 MTR_3g101900 24.578 415 254 18 61 445 63 448 1.85e-16 81.6
MsG0180001630.01.T01 MTR_7g114417 65.385 52 17 1 89 139 29 80 1.44e-15 72.0
MsG0180001630.01.T01 MTR_3g102010 25.326 383 235 17 54 402 55 420 1.68e-15 79.0
MsG0180001630.01.T01 MTR_4g022800 25.397 315 206 10 23 323 25 324 1.78e-15 78.6
MsG0180001630.01.T01 MTR_3g102020 24.533 375 230 15 61 402 66 420 1.06e-14 76.3
MsG0180001630.01.T01 MTR_4g022825 25.062 403 250 17 59 432 50 429 1.18e-14 76.3
MsG0180001630.01.T01 MTR_2g036780 23.785 391 238 11 72 437 74 429 7.55e-14 73.6
MsG0180001630.01.T01 MTR_3g051820 48.276 87 41 3 367 452 1 84 8.06e-14 67.4
MsG0180001630.01.T01 MTR_3g049140 32.000 150 83 5 257 390 54 200 2.42e-13 70.1
MsG0180001630.01.T01 MTR_4g022760 27.372 274 181 9 64 323 55 324 6.10e-13 70.5
MsG0180001630.01.T01 MTR_1g035890 24.268 239 150 6 79 303 82 303 3.89e-12 68.6
MsG0180001630.01.T01 MTR_4g007460 31.206 141 87 4 78 218 1 131 1.97e-11 62.4
MsG0180001630.01.T01 MTR_7g114960 22.713 317 223 7 45 351 44 348 4.06e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001630.01.T01 AT5G17540 54.390 467 201 8 1 461 1 461 3.60e-173 494
MsG0180001630.01.T01 AT3G03480 52.489 442 199 8 5 441 15 450 1.66e-153 444
MsG0180001630.01.T01 AT5G41040 34.644 407 243 11 7 404 31 423 2.44e-80 256
MsG0180001630.01.T01 AT5G41040 34.644 407 243 11 7 404 15 407 3.21e-80 256
MsG0180001630.01.T01 AT5G63560 32.952 437 267 12 1 430 1 418 2.99e-78 250
MsG0180001630.01.T01 AT3G48720 30.805 435 283 10 1 430 1 422 1.23e-76 246
MsG0180001630.01.T01 AT1G27620 29.933 451 287 12 10 450 10 441 2.27e-53 185
MsG0180001630.01.T01 AT5G48930 30.269 446 277 13 8 436 2 430 3.16e-53 185
MsG0180001630.01.T01 AT3G62160 33.500 400 236 12 5 394 1 380 8.43e-53 183
MsG0180001630.01.T01 AT1G03390 31.726 394 244 12 14 391 27 411 1.04e-48 173
MsG0180001630.01.T01 AT5G57840 28.571 413 260 11 8 397 2 402 5.09e-48 171
MsG0180001630.01.T01 AT1G28680 28.125 448 293 13 13 441 8 445 2.66e-46 167
MsG0180001630.01.T01 AT2G19070 29.756 410 252 13 12 392 7 409 1.12e-45 165
MsG0180001630.01.T01 AT2G40230 31.436 404 237 15 9 390 5 390 3.86e-44 160
MsG0180001630.01.T01 AT1G65450 29.011 455 281 16 7 440 16 449 2.47e-43 159
MsG0180001630.01.T01 AT1G28680 28.997 369 242 10 13 368 8 369 6.29e-42 153
MsG0180001630.01.T01 AT3G47170 27.215 474 296 14 3 440 6 466 3.24e-40 150
MsG0180001630.01.T01 AT5G07080 29.353 402 249 11 9 387 14 403 1.74e-39 148
MsG0180001630.01.T01 AT2G23510 28.480 467 285 16 1 439 5 450 1.39e-38 145
MsG0180001630.01.T01 AT2G25150 26.889 450 304 13 9 441 13 454 5.97e-38 144
MsG0180001630.01.T01 AT1G32910 28.148 405 250 13 62 441 63 451 2.87e-34 134
MsG0180001630.01.T01 AT1G78990 28.165 387 231 13 62 431 65 421 2.21e-33 131
MsG0180001630.01.T01 AT1G31490 28.418 373 224 13 38 389 36 386 4.17e-30 122
MsG0180001630.01.T01 AT4G31910 28.608 395 236 15 25 384 24 407 4.01e-26 110
MsG0180001630.01.T01 AT1G24420 27.000 400 236 15 15 388 11 380 3.40e-25 107
MsG0180001630.01.T01 AT1G24420 27.000 400 236 15 15 388 11 380 3.40e-25 107
MsG0180001630.01.T01 AT3G26040 24.874 398 254 14 15 390 9 383 3.74e-24 104
MsG0180001630.01.T01 AT5G16410 25.496 353 220 12 62 390 89 422 1.77e-22 100
MsG0180001630.01.T01 AT1G24430 25.979 281 174 8 43 315 41 295 3.92e-22 99.0
MsG0180001630.01.T01 AT5G23970 25.167 449 270 16 8 431 2 409 4.90e-22 98.6
MsG0180001630.01.T01 AT5G38130 26.119 402 248 15 23 399 48 425 8.17e-22 98.2
MsG0180001630.01.T01 AT5G07860 26.396 394 246 12 64 437 72 441 1.77e-21 97.1
MsG0180001630.01.T01 AT5G07850 27.123 365 228 15 64 402 70 422 9.53e-21 94.7
MsG0180001630.01.T01 AT3G50280 25.140 358 237 13 64 399 59 407 8.39e-20 92.0
MsG0180001630.01.T01 AT5G07870 26.870 361 240 10 64 402 72 430 1.01e-19 92.0
MsG0180001630.01.T01 AT3G50270 25.698 358 237 11 64 399 62 412 2.96e-19 90.5
MsG0180001630.01.T01 AT5G42830 25.822 426 247 14 21 402 18 418 6.93e-19 89.4
MsG0180001630.01.T01 AT5G67160 25.055 455 281 16 13 437 2 426 1.88e-18 87.8
MsG0180001630.01.T01 AT1G65450 25.497 302 188 12 158 440 2 285 4.90e-17 81.6
MsG0180001630.01.T01 AT3G30280 23.171 410 261 17 7 388 4 387 3.31e-16 80.9
MsG0180001630.01.T01 AT5G47950 24.920 313 194 12 7 309 4 285 6.56e-13 70.9
MsG0180001630.01.T01 AT3G23840 24.399 291 172 9 80 353 81 340 1.53e-12 69.7
MsG0180001630.01.T01 AT3G29670 23.919 347 231 15 64 387 66 402 5.09e-12 68.2
MsG0180001630.01.T01 AT1G65450 34.014 147 92 4 7 151 16 159 5.81e-12 64.3
MsG0180001630.01.T01 AT2G39980 28.082 146 103 2 53 197 51 195 3.12e-11 65.9

Find 104 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTCCATTTCCTTTCT+TGG 0.075005 1:-24332784 MsG0180001630.01.T01:CDS
TGCAGCAATGATTTCAAAAT+TGG 0.167630 1:+24330685 None:intergenic
GGGTCTTTCCTTGCCATATT+TGG 0.168682 1:+24332978 None:intergenic
TTTGATGGTGTTATCAATTC+AGG 0.170516 1:+24333095 None:intergenic
TCTCCTTTATCATTTGTAAA+AGG 0.217002 1:+24330236 None:intergenic
ACTAAGGGTGATCACAAATT+TGG 0.227915 1:-24330116 MsG0180001630.01.T01:CDS
GTTCCTTTGTTGACGGGTTC+TGG 0.244415 1:+24330812 None:intergenic
GATGTTACTCTTAAAGAATT+TGG 0.276060 1:-24332816 MsG0180001630.01.T01:CDS
TTATAACCATGATCCAAATA+TGG 0.294228 1:-24332991 MsG0180001630.01.T01:CDS
CACTTTGAATACTAGAGATT+TGG 0.294557 1:+24333130 None:intergenic
GGATTTAGAGATGTTGATTT+TGG 0.298021 1:-24330335 MsG0180001630.01.T01:CDS
TATAATCCCGCAGTAGTTAA+AGG 0.315636 1:+24330383 None:intergenic
GAGCTTCTTTATGATGTTCC+TGG 0.318598 1:-24332759 MsG0180001630.01.T01:CDS
ATCCATTTGCAGGTAGGTTA+AGG 0.320236 1:-24332908 MsG0180001630.01.T01:CDS
AAATCATTGCTGCATACTTT+TGG 0.324455 1:-24330676 MsG0180001630.01.T01:CDS
CAACTTCCAAATGGTTACTA+TGG 0.337065 1:-24330563 MsG0180001630.01.T01:CDS
GGAGGGGATGGTGCTCTTCC+TGG 0.355512 1:-24330278 MsG0180001630.01.T01:CDS
GTTCACCGCACTTTCTTCAT+TGG 0.359527 1:-24330767 MsG0180001630.01.T01:CDS
CCTGCAGTTGTAACCGCAAC+GGG 0.366367 1:+24330524 None:intergenic
CCCGTTGCGGTTACAACTGC+AGG 0.385362 1:-24330524 MsG0180001630.01.T01:CDS
CACTGAATGCATATACTCTT+TGG 0.396096 1:+24330436 None:intergenic
ACAAATGATAAAGGAGAGAA+AGG 0.408216 1:-24330230 MsG0180001630.01.T01:CDS
TCCTTGCCATATTTGGATCA+TGG 0.409662 1:+24332985 None:intergenic
AGCTCATCCAAGAAAGGAAA+TGG 0.411901 1:+24332777 None:intergenic
AATTTGTGATCACCCTTAGT+AGG 0.417980 1:+24330119 None:intergenic
GCGGTGAACCATGTCGTCTA+AGG 0.420378 1:+24330781 None:intergenic
TCCATTTGCAGGTAGGTTAA+GGG 0.425790 1:-24332907 MsG0180001630.01.T01:CDS
AGGTCCTAGTAGGAAACTTA+TGG 0.427564 1:-24332883 MsG0180001630.01.T01:CDS
TCCCTTAACCTACCTGCAAA+TGG 0.437418 1:+24332906 None:intergenic
AGTAACCATTTGGAAGTTGT+TGG 0.444242 1:+24330567 None:intergenic
CAACATTAACCAGCCTACTA+AGG 0.446515 1:-24330132 MsG0180001630.01.T01:CDS
AATTGGAGTATTGTTGCAAT+TGG 0.448429 1:+24330702 None:intergenic
GCGTTACCATAGTAACCATT+TGG 0.448893 1:+24330557 None:intergenic
CGTCCTCCTTTAACTACTGC+GGG 0.454902 1:-24330389 MsG0180001630.01.T01:CDS
CACTCCATTGCTACTTATCC+AGG 0.458160 1:-24332718 MsG0180001630.01.T01:intron
CTCCACACCGGTGAGATTGA+AGG 0.462106 1:+24330896 None:intergenic
AACATGGTTCCTTTGTTGAC+GGG 0.466891 1:+24330806 None:intergenic
GGAGAGGTTGGTTAAAGAGT+TGG 0.469038 1:-24330171 MsG0180001630.01.T01:CDS
TGTGATCACCCTTAGTAGGC+TGG 0.470105 1:+24330123 None:intergenic
CTTGCCAACGTAATGAATCT+TGG 0.470742 1:+24333030 None:intergenic
CTGATGCATCACTCAATGTA+TGG 0.482975 1:+24330972 None:intergenic
AAACTTATGGTTGATTGTAA+TGG 0.490791 1:-24332870 MsG0180001630.01.T01:CDS
GCACCATCCCCTCCTTTAGC+TGG 0.492161 1:+24330287 None:intergenic
TTGATGGTGTTATCAATTCA+GGG 0.493333 1:+24333096 None:intergenic
CGCTTTAGCATTTCCCGTTG+CGG 0.494082 1:-24330537 MsG0180001630.01.T01:CDS
GTGTCTGATGTTACACGTGC+TGG 0.496612 1:-24330356 MsG0180001630.01.T01:CDS
AAAACTTATTGAAAATCCAT+TGG 0.514939 1:-24330501 MsG0180001630.01.T01:CDS
TGAGTACATGTCACTCTTGG+TGG 0.517340 1:+24330848 None:intergenic
TATTGTTGCAATTGGTGAGT+TGG 0.518445 1:+24330710 None:intergenic
TGGTTATAAAATTGTATCAA+AGG 0.519033 1:+24333005 None:intergenic
GGTTAAGGGAAGGTCCTAGT+AGG 0.521835 1:-24332893 MsG0180001630.01.T01:CDS
GTTGACCAACAACTTCCAAA+TGG 0.522277 1:-24330572 MsG0180001630.01.T01:CDS
TGATAAAGGAGAGAAAGGTT+TGG 0.523809 1:-24330225 MsG0180001630.01.T01:CDS
AACTCAAGTCATGGAGAGGT+TGG 0.531928 1:-24330183 MsG0180001630.01.T01:CDS
TAAAGAAGCTCATCCAAGAA+AGG 0.532338 1:+24332771 None:intergenic
AACAGATTTGCTACGTGCAT+CGG 0.534097 1:+24330592 None:intergenic
AACCTCTCCATGACTTGAGT+TGG 0.536373 1:+24330185 None:intergenic
TCAACCATAAGTTTCCTACT+AGG 0.537063 1:+24332879 None:intergenic
CATGTTTCCCTTAGACGACA+TGG 0.537703 1:-24330789 MsG0180001630.01.T01:CDS
CCCGCGAGATATCTCTCCTA+AGG 0.540283 1:+24330928 None:intergenic
TCCTGCAGTTGTAACCGCAA+CGG 0.546523 1:+24330523 None:intergenic
CAATGAGTACATGTCACTCT+TGG 0.551648 1:+24330845 None:intergenic
AAACATGGTTCCTTTGTTGA+CGG 0.552807 1:+24330805 None:intergenic
GCAGAGAGCTTCTTAATGCA+AGG 0.554177 1:-24330874 MsG0180001630.01.T01:CDS
CTCTAGTATTCAAAGTGAAG+AGG 0.559433 1:-24333124 MsG0180001630.01.T01:CDS
TTTATTATCCATTTGCAGGT+AGG 0.559740 1:-24332914 MsG0180001630.01.T01:CDS
GTTTATGGAGGACCAGCTAA+AGG 0.560640 1:-24330299 MsG0180001630.01.T01:CDS
CGGTGAACCATGTCGTCTAA+GGG 0.561272 1:+24330782 None:intergenic
CATACATTGAGTGATGCATC+AGG 0.566369 1:-24330971 MsG0180001630.01.T01:CDS
CGAATTGCAGCAACCTCGGT+GGG 0.573531 1:+24330743 None:intergenic
AAATTCAATGCATACGCCAA+TGG 0.574953 1:+24330485 None:intergenic
TGCCAACTCAAGTCATGGAG+AGG 0.581695 1:-24330187 MsG0180001630.01.T01:CDS
ACAACTAGATTCTAACGAAG+AGG 0.582842 1:-24330633 MsG0180001630.01.T01:CDS
TCGTCCTCCTTTAACTACTG+CGG 0.583673 1:-24330390 MsG0180001630.01.T01:CDS
GAGTAAACCTTCAATCTCAC+CGG 0.590238 1:-24330903 MsG0180001630.01.T01:CDS
AACATTAACCAGCCTACTAA+GGG 0.592477 1:-24330131 MsG0180001630.01.T01:CDS
GGACCAGCTAAAGGAGGGGA+TGG 0.594000 1:-24330290 MsG0180001630.01.T01:CDS
AGAGCGAATTGCAGCAACCT+CGG 0.595184 1:+24330739 None:intergenic
CATGTCGTCTAAGGGAAACA+TGG 0.598974 1:+24330790 None:intergenic
ATGGAGGACCAGCTAAAGGA+GGG 0.603039 1:-24330295 MsG0180001630.01.T01:CDS
ACCATGATCCAAATATGGCA+AGG 0.603800 1:-24332986 MsG0180001630.01.T01:CDS
ATATGAAAGACAGCTTGACC+AGG 0.606019 1:+24330260 None:intergenic
TATACCTGGATAAGTAGCAA+TGG 0.608440 1:+24332714 None:intergenic
GTTGCAATTGGTGAGTTGGA+AGG 0.610618 1:+24330714 None:intergenic
CAGAGAGCTTCTTAATGCAA+GGG 0.614681 1:-24330873 MsG0180001630.01.T01:CDS
ATGGTTGATTGTAATGGTGA+AGG 0.618125 1:-24332864 MsG0180001630.01.T01:CDS
GCCTTAGGAGAGATATCTCG+CGG 0.618905 1:-24330929 MsG0180001630.01.T01:CDS
ATGACCAAGATTCATTACGT+TGG 0.619237 1:-24333034 MsG0180001630.01.T01:CDS
TATGGAGGACCAGCTAAAGG+AGG 0.622508 1:-24330296 MsG0180001630.01.T01:CDS
GATCCAGAACCCGTCAACAA+AGG 0.628800 1:-24330815 MsG0180001630.01.T01:CDS
CAGGTAACACGCTTCAAGTG+TGG 0.636908 1:-24331022 MsG0180001630.01.T01:CDS
CAAAGAGTATATGCATTCAG+TGG 0.642688 1:-24330435 MsG0180001630.01.T01:CDS
GTAACACGCTTCAAGTGTGG+TGG 0.643774 1:-24331019 MsG0180001630.01.T01:CDS
AACCTTCAATCTCACCGGTG+TGG 0.645966 1:-24330898 MsG0180001630.01.T01:CDS
TCATCCAAGAAAGGAAATGG+AGG 0.650133 1:+24332780 None:intergenic
TTTGCAGGTAGGTTAAGGGA+AGG 0.651163 1:-24332903 MsG0180001630.01.T01:CDS
AGAAGCTCTCTGCTCCACAC+CGG 0.659501 1:+24330884 None:intergenic
TTAATCACATCTGAAGAACC+AGG 0.665982 1:+24332741 None:intergenic
GCGAATTGCAGCAACCTCGG+TGG 0.672845 1:+24330742 None:intergenic
TGGGACCAATGAAGAAAGTG+CGG 0.689546 1:+24330762 None:intergenic
CCTTAGGAGAGATATCTCGC+GGG 0.690826 1:-24330928 MsG0180001630.01.T01:CDS
AATCCCGCAGTAGTTAAAGG+AGG 0.692126 1:+24330386 None:intergenic
TTTCTTCATTGGTCCCACCG+AGG 0.698432 1:-24330756 MsG0180001630.01.T01:CDS
TGGAGGACCAGCTAAAGGAG+GGG 0.700713 1:-24330294 MsG0180001630.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCCTAAAAAAAAAAAAAAA+AGG - Chr1:24331451-24331470 MsG0180001630.01.T01:intron 10.0%
!!! AACCTTTTTTTTTTTTTTTT+AGG + Chr1:24331456-24331475 None:intergenic 10.0%
!!! TAAATTATTTTAATAAGTGA+AGG + Chr1:24331954-24331973 None:intergenic 10.0%
!!! TATTTGAATCATTTTTTTTA+AGG + Chr1:24332016-24332035 None:intergenic 10.0%
!! AAAAATGATTCAAATATATG+TGG - Chr1:24332020-24332039 MsG0180001630.01.T01:intron 15.0%
!! TATTAAAATCAATTGATATG+CGG + Chr1:24332149-24332168 None:intergenic 15.0%
!!! AAAAAACCTTATTTTCTATA+TGG + Chr1:24331433-24331452 None:intergenic 15.0%
!!! AATAATTTAAACTTTTTGTG+AGG - Chr1:24331965-24331984 MsG0180001630.01.T01:intron 15.0%
!!! CAATTTATTTTATCTTTTCA+AGG - Chr1:24331690-24331709 MsG0180001630.01.T01:intron 15.0%
!!! CCAACATAAAATATTTTATT+AGG - Chr1:24331648-24331667 MsG0180001630.01.T01:intron 15.0%
!!! CCTAATAAAATATTTTATGT+TGG + Chr1:24331651-24331670 None:intergenic 15.0%
!! AAAACTTATTGAAAATCCAT+TGG - Chr1:24332727-24332746 MsG0180001630.01.T01:CDS 20.0%
!! AAGAAATAAATAACATTAGG+AGG + Chr1:24331092-24331111 None:intergenic 20.0%
!! AGAAATAAATAACATTAGGA+GGG + Chr1:24331091-24331110 None:intergenic 20.0%
!! ATACAAAATTATCCTCATTT+AGG + Chr1:24331037-24331056 None:intergenic 20.0%
!! TACAAAATTATCCTCATTTA+GGG + Chr1:24331036-24331055 None:intergenic 20.0%
!! TGGAAGAAATAAATAACATT+AGG + Chr1:24331095-24331114 None:intergenic 20.0%
!! TGGTTATAAAATTGTATCAA+AGG + Chr1:24330226-24330245 None:intergenic 20.0%
!! TGTTAAAAATGGTCATTAAT+TGG + Chr1:24332048-24332067 None:intergenic 20.0%
!!! ATCAAATTTTGAGATCATTT+TGG + Chr1:24331873-24331892 None:intergenic 20.0%
!!! ATCAAGAGTATTTAAAAGTT+TGG + Chr1:24331829-24331848 None:intergenic 20.0%
!!! ATGAAAATTACACATTTTAC+AGG + Chr1:24331563-24331582 None:intergenic 20.0%
!!! ATTCCTTTTACAAATGATAA+AGG - Chr1:24332989-24333008 MsG0180001630.01.T01:CDS 20.0%
!!! ATTTTAGTTTCTTGAGTTTT+CGG - Chr1:24331905-24331924 MsG0180001630.01.T01:intron 20.0%
!!! GATCTCAAAATTTGATTTTT+AGG - Chr1:24331877-24331896 MsG0180001630.01.T01:intron 20.0%
!!! TATTGAAGAAAAGTTTTGAA+GGG + Chr1:24331000-24331019 None:intergenic 20.0%
!!! TCTAGGTTTTAATATCTTTT+TGG + Chr1:24331772-24331791 None:intergenic 20.0%
!!! TGAAAATTACACATTTTACA+GGG + Chr1:24331562-24331581 None:intergenic 20.0%
!!! TTCAATTCATTTTAACTTCT+AGG + Chr1:24331789-24331808 None:intergenic 20.0%
! AAACTTATGGTTGATTGTAA+TGG - Chr1:24330358-24330377 MsG0180001630.01.T01:CDS 25.0%
! GAAATAAATAACATTAGGAG+GGG + Chr1:24331090-24331109 None:intergenic 25.0%
! GATGTTACTCTTAAAGAATT+TGG - Chr1:24330412-24330431 MsG0180001630.01.T01:CDS 25.0%
! GATTTATGTTCCACTATTAT+AGG + Chr1:24330859-24330878 None:intergenic 25.0%
! GCTTTGTGGAAAAATATAAA+GGG - Chr1:24330659-24330678 MsG0180001630.01.T01:CDS 25.0%
! TACATATTATCGGAGAAATT+TGG - Chr1:24330555-24330574 MsG0180001630.01.T01:CDS 25.0%
! TCTCCTTTATCATTTGTAAA+AGG + Chr1:24332995-24333014 None:intergenic 25.0%
! TTATAACCATGATCCAAATA+TGG - Chr1:24330237-24330256 MsG0180001630.01.T01:CDS 25.0%
! TTTAGGCCATATAGAAAATA+AGG - Chr1:24331424-24331443 MsG0180001630.01.T01:intron 25.0%
!! AAAATGAATTGAAGCCTTAT+CGG - Chr1:24331796-24331815 MsG0180001630.01.T01:intron 25.0%
!! AATCTATGTGGTGTTAAAAA+TGG + Chr1:24332059-24332078 None:intergenic 25.0%
!! AGCTTTGTGGAAAAATATAA+AGG - Chr1:24330658-24330677 MsG0180001630.01.T01:CDS 25.0%
!! CTTTTCACACTACATATTAT+CGG - Chr1:24330545-24330564 MsG0180001630.01.T01:CDS 25.0%
!!! GTATTGAAGAAAAGTTTTGA+AGG + Chr1:24331001-24331020 None:intergenic 25.0%
!!! GTCACATGTTCAATTTTTTA+AGG + Chr1:24330906-24330925 None:intergenic 25.0%
!!! TTTTAAGGAAGAGAAACAAT+TGG + Chr1:24330891-24330910 None:intergenic 25.0%
AACATAGCAATGTAACATCA+AGG + Chr1:24332093-24332112 None:intergenic 30.0%
ACAAATGATAAAGGAGAGAA+AGG - Chr1:24332998-24333017 MsG0180001630.01.T01:CDS 30.0%
CACTATTATAGGAAAACATG+GGG + Chr1:24330848-24330867 None:intergenic 30.0%
CACTTTGAATACTAGAGATT+TGG + Chr1:24330101-24330120 None:intergenic 30.0%
CCACTATTATAGGAAAACAT+GGG + Chr1:24330849-24330868 None:intergenic 30.0%
GAAAAGATCAATACTATACC+TGG + Chr1:24330531-24330550 None:intergenic 30.0%
GAGAAACAATTGGCTATTAT+AGG + Chr1:24330881-24330900 None:intergenic 30.0%
GTAGAAAGTTCAAATCTATG+TGG + Chr1:24332071-24332090 None:intergenic 30.0%
GTCAAAATTCAATGCAGATT+TGG + Chr1:24331277-24331296 None:intergenic 30.0%
GTCCTTTCAATACTTATGTA+AGG + Chr1:24331592-24331611 None:intergenic 30.0%
TCCACTATTATAGGAAAACA+TGG + Chr1:24330850-24330869 None:intergenic 30.0%
TGCAGCAATGATTTCAAAAT+TGG + Chr1:24332546-24332565 None:intergenic 30.0%
TTTATTATCCATTTGCAGGT+AGG - Chr1:24330314-24330333 MsG0180001630.01.T01:CDS 30.0%
! AAATCATTGCTGCATACTTT+TGG - Chr1:24332552-24332571 MsG0180001630.01.T01:intron 30.0%
! CTTTTCGAATAACATCAACA+GGG + Chr1:24330273-24330292 None:intergenic 30.0%
! GCAGATTTTATGGTTATCAA+GGG - Chr1:24332815-24332834 MsG0180001630.01.T01:CDS 30.0%
!! AATTGGAGTATTGTTGCAAT+TGG + Chr1:24332529-24332548 None:intergenic 30.0%
!! GTCCTTACATAAGTATTGAA+AGG - Chr1:24331587-24331606 MsG0180001630.01.T01:intron 30.0%
!! GTGTTTTATTATCCATTTGC+AGG - Chr1:24330310-24330329 MsG0180001630.01.T01:CDS 30.0%
!! TTGATGGTGTTATCAATTCA+GGG + Chr1:24330135-24330154 None:intergenic 30.0%
!! TTTGATGGTGTTATCAATTC+AGG + Chr1:24330136-24330155 None:intergenic 30.0%
!!! AGAGTTTTGGAAAAAAGGAA+AGG + Chr1:24331124-24331143 None:intergenic 30.0%
!!! GGATTTAGAGATGTTGATTT+TGG - Chr1:24332893-24332912 MsG0180001630.01.T01:CDS 30.0%
!!! TAGAGATGTTGATTTTGGTT+GGG - Chr1:24332898-24332917 MsG0180001630.01.T01:CDS 30.0%
!!! TTAGAGATGTTGATTTTGGT+TGG - Chr1:24332897-24332916 MsG0180001630.01.T01:CDS 30.0%
AAACATGGTTCCTTTGTTGA+CGG + Chr1:24332426-24332445 None:intergenic 35.0%
AAATTCAATGCATACGCCAA+TGG + Chr1:24332746-24332765 None:intergenic 35.0%
AACATTAACCAGCCTACTAA+GGG - Chr1:24333097-24333116 MsG0180001630.01.T01:CDS 35.0%
AATTTGTGATCACCCTTAGT+AGG + Chr1:24333112-24333131 None:intergenic 35.0%
ACAACTAGATTCTAACGAAG+AGG - Chr1:24332595-24332614 MsG0180001630.01.T01:intron 35.0%
ACATTTGTATCGAGATCACA+CGG - Chr1:24331187-24331206 MsG0180001630.01.T01:intron 35.0%
ACCAATAGAAACAATTCGCT+AGG + Chr1:24330807-24330826 None:intergenic 35.0%
ACTAAGGGTGATCACAAATT+TGG - Chr1:24333112-24333131 MsG0180001630.01.T01:CDS 35.0%
ACTTCTTAGTTCCCTAAATG+AGG - Chr1:24331022-24331041 MsG0180001630.01.T01:CDS 35.0%
AGTAACCATTTGGAAGTTGT+TGG + Chr1:24332664-24332683 None:intergenic 35.0%
ATAAATAACATTAGGAGGGG+AGG + Chr1:24331087-24331106 None:intergenic 35.0%
ATATGCGGTGATTAAACTTG+AGG + Chr1:24332134-24332153 None:intergenic 35.0%
ATGACCAAGATTCATTACGT+TGG - Chr1:24330194-24330213 MsG0180001630.01.T01:CDS 35.0%
ATGGTTGATTGTAATGGTGA+AGG - Chr1:24330364-24330383 MsG0180001630.01.T01:CDS 35.0%
CAACTTCCAAATGGTTACTA+TGG - Chr1:24332665-24332684 MsG0180001630.01.T01:intron 35.0%
CACTGAATGCATATACTCTT+TGG + Chr1:24332795-24332814 None:intergenic 35.0%
CTCTAGTATTCAAAGTGAAG+AGG - Chr1:24330104-24330123 MsG0180001630.01.T01:CDS 35.0%
TAAAGAAGCTCATCCAAGAA+AGG + Chr1:24330460-24330479 None:intergenic 35.0%
TAAATAACATTAGGAGGGGA+GGG + Chr1:24331086-24331105 None:intergenic 35.0%
TATAATCCCGCAGTAGTTAA+AGG + Chr1:24332848-24332867 None:intergenic 35.0%
TATACCTGGATAAGTAGCAA+TGG + Chr1:24330517-24330536 None:intergenic 35.0%
TATTGTTGCAATTGGTGAGT+TGG + Chr1:24332521-24332540 None:intergenic 35.0%
TCAACCATAAGTTTCCTACT+AGG + Chr1:24330352-24330371 None:intergenic 35.0%
TGATAAAGGAGAGAAAGGTT+TGG - Chr1:24333003-24333022 MsG0180001630.01.T01:CDS 35.0%
TTAATCACATCTGAAGAACC+AGG + Chr1:24330490-24330509 None:intergenic 35.0%
TTTCGTTGGATCGAAATCAA+AGG + Chr1:24331301-24331320 None:intergenic 35.0%
! AGTTTGGTAGTATTCCGATA+AGG + Chr1:24331813-24331832 None:intergenic 35.0%
! CAAAGAGTATATGCATTCAG+TGG - Chr1:24332793-24332812 MsG0180001630.01.T01:CDS 35.0%
! CCCATGTTTTCCTATAATAG+TGG - Chr1:24330846-24330865 MsG0180001630.01.T01:CDS 35.0%
! GCTTTTCGAATAACATCAAC+AGG + Chr1:24330274-24330293 None:intergenic 35.0%
! GGCAGATTTTATGGTTATCA+AGG - Chr1:24332814-24332833 MsG0180001630.01.T01:CDS 35.0%
!! ACTTGAGTTGGCAAAAAAAC+TGG + Chr1:24333034-24333053 None:intergenic 35.0%
!! AGCGAATTGTTTCTATTGGT+TGG - Chr1:24330807-24330826 MsG0180001630.01.T01:CDS 35.0%
!!! AGAGATGTTGATTTTGGTTG+GGG - Chr1:24332899-24332918 MsG0180001630.01.T01:CDS 35.0%
!!! AGTTTTGTTTCATGAGGTGT+GGG + Chr1:24330160-24330179 None:intergenic 35.0%
!!! CTTCAATTTTTGAGTGCCTT+AGG - Chr1:24332284-24332303 MsG0180001630.01.T01:intron 35.0%
!!! GAGAGTAGTTTTGTTTCATG+AGG + Chr1:24330166-24330185 None:intergenic 35.0%
!!! TAGTTTTGTTTCATGAGGTG+TGG + Chr1:24330161-24330180 None:intergenic 35.0%
!!! TTTTTTGCCAACTCAAGTCA+TGG - Chr1:24333036-24333055 MsG0180001630.01.T01:CDS 35.0%
AAACTCCCAAATAAAGCCCT+AGG + Chr1:24330619-24330638 None:intergenic 40.0%
AACATGGTTCCTTTGTTGAC+GGG + Chr1:24332425-24332444 None:intergenic 40.0%
AACTCCCAAATAAAGCCCTA+GGG + Chr1:24330618-24330637 None:intergenic 40.0%
AATTCATTTCTAACCCGTGC+AGG - Chr1:24332187-24332206 MsG0180001630.01.T01:intron 40.0%
ACAAATGTTCACCTACGCTT+TGG + Chr1:24331175-24331194 None:intergenic 40.0%
ACCATGATCCAAATATGGCA+AGG - Chr1:24330242-24330261 MsG0180001630.01.T01:CDS 40.0%
AGCTCATCCAAGAAAGGAAA+TGG + Chr1:24330454-24330473 None:intergenic 40.0%
AGGTCCTAGTAGGAAACTTA+TGG - Chr1:24330345-24330364 MsG0180001630.01.T01:CDS 40.0%
ATATGAAAGACAGCTTGACC+AGG + Chr1:24332971-24332990 None:intergenic 40.0%
ATCCATTTGCAGGTAGGTTA+AGG - Chr1:24330320-24330339 MsG0180001630.01.T01:CDS 40.0%
ATTTCGATCCAACGAAACGA+TGG - Chr1:24331304-24331323 MsG0180001630.01.T01:intron 40.0%
CAACATTAACCAGCCTACTA+AGG - Chr1:24333096-24333115 MsG0180001630.01.T01:CDS 40.0%
CAATGAGTACATGTCACTCT+TGG + Chr1:24332386-24332405 None:intergenic 40.0%
CAGAGAGCTTCTTAATGCAA+GGG - Chr1:24332355-24332374 MsG0180001630.01.T01:intron 40.0%
CATACATTGAGTGATGCATC+AGG - Chr1:24332257-24332276 MsG0180001630.01.T01:intron 40.0%
CTGATGCATCACTCAATGTA+TGG + Chr1:24332259-24332278 None:intergenic 40.0%
CTTGCCAACGTAATGAATCT+TGG + Chr1:24330201-24330220 None:intergenic 40.0%
GAAAAAAGGAAAGGAGCAAG+TGG + Chr1:24331115-24331134 None:intergenic 40.0%
GAGCTTCTTTATGATGTTCC+TGG - Chr1:24330469-24330488 MsG0180001630.01.T01:CDS 40.0%
GAGTAAACCTTCAATCTCAC+CGG - Chr1:24332325-24332344 MsG0180001630.01.T01:intron 40.0%
GCGTTACCATAGTAACCATT+TGG + Chr1:24332674-24332693 None:intergenic 40.0%
GTTGACCAACAACTTCCAAA+TGG - Chr1:24332656-24332675 MsG0180001630.01.T01:intron 40.0%
TCATCCAAGAAAGGAAATGG+AGG + Chr1:24330451-24330470 None:intergenic 40.0%
TCATCCTCCATTTCCTTTCT+TGG - Chr1:24330444-24330463 MsG0180001630.01.T01:CDS 40.0%
TCCATTTGCAGGTAGGTTAA+GGG - Chr1:24330321-24330340 MsG0180001630.01.T01:CDS 40.0%
TCCTTGCCATATTTGGATCA+TGG + Chr1:24330246-24330265 None:intergenic 40.0%
TTTCGATCCAACGAAACGAT+GGG - Chr1:24331305-24331324 MsG0180001630.01.T01:intron 40.0%
! CTTTATTTGGGAGTTTGGAG+AGG - Chr1:24330623-24330642 MsG0180001630.01.T01:CDS 40.0%
! GCATTCAGTGGCAGATTTTA+TGG - Chr1:24332805-24332824 MsG0180001630.01.T01:CDS 40.0%
!! AACAGATTTGCTACGTGCAT+CGG + Chr1:24332639-24332658 None:intergenic 40.0%
!! GCCTAGCGAATTGTTTCTAT+TGG - Chr1:24330803-24330822 MsG0180001630.01.T01:CDS 40.0%
!! TAGGGCTTTATTTGGGAGTT+TGG - Chr1:24330618-24330637 MsG0180001630.01.T01:CDS 40.0%
!!! AGGGGAGAGTTTTGGAAAAA+AGG + Chr1:24331129-24331148 None:intergenic 40.0%
!!! GAGATGTTGATTTTGGTTGG+GGG - Chr1:24332900-24332919 MsG0180001630.01.T01:CDS 40.0%
AACCTCTCCATGACTTGAGT+TGG + Chr1:24333046-24333065 None:intergenic 45.0%
AACTCAAGTCATGGAGAGGT+TGG - Chr1:24333045-24333064 MsG0180001630.01.T01:CDS 45.0%
AATCCCGCAGTAGTTAAAGG+AGG + Chr1:24332845-24332864 None:intergenic 45.0%
ATTTGGGAGTTTGGAGAGGA+GGG - Chr1:24330627-24330646 MsG0180001630.01.T01:CDS 45.0%
CAAACTTGCAACCAAAGCGT+AGG - Chr1:24331161-24331180 MsG0180001630.01.T01:intron 45.0%
CAATCAACCCATCGTTTCGT+TGG + Chr1:24331315-24331334 None:intergenic 45.0%
CATGTCGTCTAAGGGAAACA+TGG + Chr1:24332441-24332460 None:intergenic 45.0%
CATGTTTCCCTTAGACGACA+TGG - Chr1:24332439-24332458 MsG0180001630.01.T01:intron 45.0%
CTACGCTTTGGTTGCAAGTT+TGG + Chr1:24331163-24331182 None:intergenic 45.0%
CTTTGGTTGCAAGTTTGGAG+GGG + Chr1:24331158-24331177 None:intergenic 45.0%
GCAGAGAGCTTCTTAATGCA+AGG - Chr1:24332354-24332373 MsG0180001630.01.T01:intron 45.0%
GCTTTGGTTGCAAGTTTGGA+GGG + Chr1:24331159-24331178 None:intergenic 45.0%
GGGTCTTTCCTTGCCATATT+TGG + Chr1:24330253-24330272 None:intergenic 45.0%
GTTCACCGCACTTTCTTCAT+TGG - Chr1:24332461-24332480 MsG0180001630.01.T01:intron 45.0%
GTTTATGGAGGACCAGCTAA+AGG - Chr1:24332929-24332948 MsG0180001630.01.T01:CDS 45.0%
TATTTGGGAGTTTGGAGAGG+AGG - Chr1:24330626-24330645 MsG0180001630.01.T01:CDS 45.0%
TCCCTTAACCTACCTGCAAA+TGG + Chr1:24330325-24330344 None:intergenic 45.0%
TCGTCCTCCTTTAACTACTG+CGG - Chr1:24332838-24332857 MsG0180001630.01.T01:CDS 45.0%
TGAGTACATGTCACTCTTGG+TGG + Chr1:24332383-24332402 None:intergenic 45.0%
TGGGACCAATGAAGAAAGTG+CGG + Chr1:24332469-24332488 None:intergenic 45.0%
TTTGCAGGTAGGTTAAGGGA+AGG - Chr1:24330325-24330344 MsG0180001630.01.T01:CDS 45.0%
TTTGGTTGCAAGTTTGGAGG+GGG + Chr1:24331157-24331176 None:intergenic 45.0%
! CACTCCATTGCTACTTATCC+AGG - Chr1:24330510-24330529 MsG0180001630.01.T01:CDS 45.0%
! GGAGAGGTTGGTTAAAGAGT+TGG - Chr1:24333057-24333076 MsG0180001630.01.T01:CDS 45.0%
! GTTGCAATTGGTGAGTTGGA+AGG + Chr1:24332517-24332536 None:intergenic 45.0%
!! CTGTCCCTAGGGCTTTATTT+GGG - Chr1:24330611-24330630 MsG0180001630.01.T01:CDS 45.0%
!! TCATGAGGTGTGGGTTTTGA+TGG + Chr1:24330151-24330170 None:intergenic 45.0%
!!! AAATAAAATATATTTTTACA+AGG - Chr1:24331716-24331735 MsG0180001630.01.T01:intron 5.0%
!!! ATTTCATTTATATATTTTTT+TGG + Chr1:24331253-24331272 None:intergenic 5.0%
!!! TATTTTTAATATTAAGAATA+CGG - Chr1:24330757-24330776 MsG0180001630.01.T01:CDS 5.0%
!!! TATTTTTTTCATTTAATTTT+AGG - Chr1:24331407-24331426 MsG0180001630.01.T01:intron 5.0%
AACCTTCAATCTCACCGGTG+TGG - Chr1:24332330-24332349 MsG0180001630.01.T01:intron 50.0%
ACACTTTCACGCTGTCCCTA+GGG - Chr1:24330600-24330619 MsG0180001630.01.T01:CDS 50.0%
AGAGCGAATTGCAGCAACCT+CGG + Chr1:24332492-24332511 None:intergenic 50.0%
AGCGTTATTCACAGCGAAGC+AGG + Chr1:24330928-24330947 None:intergenic 50.0%
ATGGAGGACCAGCTAAAGGA+GGG - Chr1:24332933-24332952 MsG0180001630.01.T01:CDS 50.0%
CAGGTAACACGCTTCAAGTG+TGG - Chr1:24332206-24332225 MsG0180001630.01.T01:intron 50.0%
CCTTAGGAGAGATATCTCGC+GGG - Chr1:24332300-24332319 MsG0180001630.01.T01:intron 50.0%
CGCTTTAGCATTTCCCGTTG+CGG - Chr1:24332691-24332710 MsG0180001630.01.T01:intron 50.0%
CGCTTTGGTTGCAAGTTTGG+AGG + Chr1:24331160-24331179 None:intergenic 50.0%
CGGTGAACCATGTCGTCTAA+GGG + Chr1:24332449-24332468 None:intergenic 50.0%
CGTCCTCCTTTAACTACTGC+GGG - Chr1:24332839-24332858 MsG0180001630.01.T01:CDS 50.0%
CTTGAAGCGTGTTACCTGCA+CGG + Chr1:24332204-24332223 None:intergenic 50.0%
GATCCAGAACCCGTCAACAA+AGG - Chr1:24332413-24332432 MsG0180001630.01.T01:intron 50.0%
GCCTTAGGAGAGATATCTCG+CGG - Chr1:24332299-24332318 MsG0180001630.01.T01:intron 50.0%
GGTTAAGGGAAGGTCCTAGT+AGG - Chr1:24330335-24330354 MsG0180001630.01.T01:CDS 50.0%
GGTTGGGGGAAAGCTGTTTA+TGG - Chr1:24332914-24332933 MsG0180001630.01.T01:CDS 50.0%
GTAACACGCTTCAAGTGTGG+TGG - Chr1:24332209-24332228 MsG0180001630.01.T01:intron 50.0%
GTGTCTGATGTTACACGTGC+TGG - Chr1:24332872-24332891 MsG0180001630.01.T01:CDS 50.0%
TATGGAGGACCAGCTAAAGG+AGG - Chr1:24332932-24332951 MsG0180001630.01.T01:CDS 50.0%
TCCTGCAGTTGTAACCGCAA+CGG + Chr1:24332708-24332727 None:intergenic 50.0%
TGCCAACTCAAGTCATGGAG+AGG - Chr1:24333041-24333060 MsG0180001630.01.T01:CDS 50.0%
TGGGGGAAAGCTGTTTATGG+AGG - Chr1:24332917-24332936 MsG0180001630.01.T01:CDS 50.0%
TGTGATCACCCTTAGTAGGC+TGG + Chr1:24333108-24333127 None:intergenic 50.0%
TTGAAGCGTGTTACCTGCAC+GGG + Chr1:24332203-24332222 None:intergenic 50.0%
TTGCAAGTTTGGAGGGGGAA+GGG + Chr1:24331152-24331171 None:intergenic 50.0%
TTTCTTCATTGGTCCCACCG+AGG - Chr1:24332472-24332491 MsG0180001630.01.T01:intron 50.0%
TTTGGGAGTTTGGAGAGGAG+GGG - Chr1:24330628-24330647 MsG0180001630.01.T01:CDS 50.0%
!! GCTGTCCCTAGGGCTTTATT+TGG - Chr1:24330610-24330629 MsG0180001630.01.T01:CDS 50.0%
!! GTTCCTTTGTTGACGGGTTC+TGG + Chr1:24332419-24332438 None:intergenic 50.0%
AAGTTTGGAGGGGGAAGGGA+GGG + Chr1:24331148-24331167 None:intergenic 55.0%
AGAAGCTCTCTGCTCCACAC+CGG + Chr1:24332347-24332366 None:intergenic 55.0%
CAATTCGCTAGGCATTCGCG+AGG + Chr1:24330796-24330815 None:intergenic 55.0%
CACACTTTCACGCTGTCCCT+AGG - Chr1:24330599-24330618 MsG0180001630.01.T01:CDS 55.0%
CCCGCGAGATATCTCTCCTA+AGG + Chr1:24332303-24332322 None:intergenic 55.0%
CCTGCAGTTGTAACCGCAAC+GGG + Chr1:24332707-24332726 None:intergenic 55.0%
CGAATTGCAGCAACCTCGGT+GGG + Chr1:24332488-24332507 None:intergenic 55.0%
CTCCACACCGGTGAGATTGA+AGG + Chr1:24332335-24332354 None:intergenic 55.0%
GAGGGGAAGAGAGAGCTTTG+TGG - Chr1:24330645-24330664 MsG0180001630.01.T01:CDS 55.0%
GCGGTGAACCATGTCGTCTA+AGG + Chr1:24332450-24332469 None:intergenic 55.0%
GTTGCAAGTTTGGAGGGGGA+AGG + Chr1:24331153-24331172 None:intergenic 55.0%
TGGAGGACCAGCTAAAGGAG+GGG - Chr1:24332934-24332953 MsG0180001630.01.T01:CDS 55.0%
! TTAGGAGGGGAGGGCTTTAG+AGG + Chr1:24331077-24331096 None:intergenic 55.0%
!! TAGGAGGGGAGGGCTTTAGA+GGG + Chr1:24331076-24331095 None:intergenic 55.0%
AGTTTGGAGGGGGAAGGGAG+GGG + Chr1:24331147-24331166 None:intergenic 60.0%
CAAGTTTGGAGGGGGAAGGG+AGG + Chr1:24331149-24331168 None:intergenic 60.0%
CCCGTTGCGGTTACAACTGC+AGG - Chr1:24332704-24332723 MsG0180001630.01.T01:intron 60.0%
GCACCATCCCCTCCTTTAGC+TGG + Chr1:24332944-24332963 None:intergenic 60.0%
GCGAATTGCAGCAACCTCGG+TGG + Chr1:24332489-24332508 None:intergenic 60.0%
GGACCAGCTAAAGGAGGGGA+TGG - Chr1:24332938-24332957 MsG0180001630.01.T01:CDS 60.0%
! GGGAAGGGAGGGGAGAGTTT+TGG + Chr1:24331137-24331156 None:intergenic 60.0%
GGAGGGGATGGTGCTCTTCC+TGG - Chr1:24332950-24332969 MsG0180001630.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 24330094 24333156 24330094 ID=MsG0180001630.01;Name=MsG0180001630.01
Chr1 mRNA 24330094 24333156 24330094 ID=MsG0180001630.01.T01;Parent=MsG0180001630.01;Name=MsG0180001630.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|461
Chr1 exon 24332719 24333156 24332719 ID=MsG0180001630.01.T01:exon:40744;Parent=MsG0180001630.01.T01
Chr1 exon 24330094 24331041 24330094 ID=MsG0180001630.01.T01:exon:40743;Parent=MsG0180001630.01.T01
Chr1 CDS 24332719 24333156 24332719 ID=MsG0180001630.01.T01:cds;Parent=MsG0180001630.01.T01
Chr1 CDS 24330094 24331041 24330094 ID=MsG0180001630.01.T01:cds;Parent=MsG0180001630.01.T01
Gene Sequence

>MsG0180001630.01.T01

ATGGCCAAATCTCTAGTATTCAAAGTGAAGAGGCGTGACCCTGAATTGATAACACCATCAAAACCCACACCTCATGAAACAAAACTACTCTCAGACATTGATGACCAAGATTCATTACGTTGGCAAGTTCCTTTGATACAATTTTATAACCATGATCCAAATATGGCAAGGAAAGACCCTGTTGATGTTATTCGAAAAGCATTAGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGGTTAAGGGAAGGTCCTAGTAGGAAACTTATGGTTGATTGTAATGGTGAAGGTGTTTTGTTCATTGAAGCTGATGCTGATGTTACTCTTAAAGAATTTGGTGATGCTCTTCATCCTCCATTTCCTTTCTTGGATGAGCTTCTTTATGATGTTCCTGGTTCTTCAGATGTGATTAACACTCCATTGCTACTTATCCAGGTAACACGCTTCAAGTGTGGTGGTTTCATCTTTGCTCTTCGTATGAACCATACATTGAGTGATGCATCAGGTATGCTTCAATTTTTGAGTGCCTTAGGAGAGATATCTCGCGGGATGAGTAAACCTTCAATCTCACCGGTGTGGAGCAGAGAGCTTCTTAATGCAAGGGATCCACCAAGAGTGACATGTACTCATTGTGAATACGATCCAGAACCCGTCAACAAAGGAACCATGTTTCCCTTAGACGACATGGTTCACCGCACTTTCTTCATTGGTCCCACCGAGGTTGCTGCAATTCGCTCTCTCCTTCCAACTCACCAATTGCAACAATACTCCAATTTTGAAATCATTGCTGCATACTTTTGGCGTTGTCGTACAATAGCATTACAACTAGATTCTAACGAAGAGGTTCGCATAATCTGCATAGCCGATGCACGTAGCAAATCTGTTGACCAACAACTTCCAAATGGTTACTATGGTAACGCTTTAGCATTTCCCGTTGCGGTTACAACTGCAGGAAAACTTATTGAAAATCCATTGGCGTATGCATTGAATTTAGTTAAGAAAGCAAAAACTATTGTCACCAAAGAGTATATGCATTCAGTGGCAGATTTTATGGTTATCAAGGGTCGTCCTCCTTTAACTACTGCGGGATTATATTTAGTGTCTGATGTTACACGTGCTGGATTTAGAGATGTTGATTTTGGTTGGGGGAAAGCTGTTTATGGAGGACCAGCTAAAGGAGGGGATGGTGCTCTTCCTGGTCAAGCTGTCTTTCATATTCCTTTTACAAATGATAAAGGAGAGAAAGGTTTGGTTATACCAGTTTTTTTGCCAACTCAAGTCATGGAGAGGTTGGTTAAAGAGTTGGATAGTGTTCTTAAGAACAACATTAACCAGCCTACTAAGGGTGATCACAAATTTGGCTTCATTAAATCTTCGTTGTAG
Protein sequence

>MsG0180001630.01.T01

MAKSLVFKVKRRDPELITPSKPTPHETKLLSDIDDQDSLRWQVPLIQFYNHDPNMARKDPVDVIRKALAKTLVFYYPFAGRLREGPSRKLMVDCNGEGVLFIEADADVTLKEFGDALHPPFPFLDELLYDVPGSSDVINTPLLLIQVTRFKCGGFIFALRMNHTLSDASGMLQFLSALGEISRGMSKPSISPVWSRELLNARDPPRVTCTHCEYDPEPVNKGTMFPLDDMVHRTFFIGPTEVAAIRSLLPTHQLQQYSNFEIIAAYFWRCRTIALQLDSNEEVRIICIADARSKSVDQQLPNGYYGNALAFPVAVTTAGKLIENPLAYALNLVKKAKTIVTKEYMHSVADFMVIKGRPPLTTAGLYLVSDVTRAGFRDVDFGWGKAVYGGPAKGGDGALPGQAVFHIPFTNDKGEKGLVIPVFLPTQVMERLVKELDSVLKNNINQPTKGDHKFGFIKSSL*