AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001633.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001633.01.T01 MTR_1g040195 83.442 459 53 1 1 459 1 436 0.0 788
MsG0180001633.01.T01 MTR_1g040215 74.620 461 115 2 1 459 1 461 0.0 715
MsG0180001633.01.T01 MTR_1g040175 73.753 461 116 3 1 459 1 458 0.0 699
MsG0180001633.01.T01 MTR_1g040320 70.000 460 102 2 1 459 1 425 0.0 649
MsG0180001633.01.T01 MTR_1g040315 70.652 460 91 4 1 459 1 417 0.0 645
MsG0180001633.01.T01 MTR_7g114550 58.597 442 175 5 2 438 3 441 0.0 545
MsG0180001633.01.T01 MTR_7g114560 58.462 455 180 6 5 454 6 456 0.0 545
MsG0180001633.01.T01 MTR_5g076700 57.930 454 185 4 5 454 6 457 0.0 544
MsG0180001633.01.T01 MTR_7g114470 57.802 455 185 4 5 454 7 459 0.0 538
MsG0180001633.01.T01 MTR_1g081660 60.046 438 170 5 4 438 13 448 0.0 531
MsG0180001633.01.T01 MTR_7g114520 56.926 462 178 7 5 454 7 459 0.0 530
MsG0180001633.01.T01 MTR_7g114490 59.397 431 167 5 5 430 6 433 0.0 530
MsG0180001633.01.T01 MTR_0042s0190 67.340 297 95 2 165 459 1 297 2.12e-143 412
MsG0180001633.01.T01 MTR_7g114510 52.188 320 133 6 146 454 7 317 2.82e-108 323
MsG0180001633.01.T01 MTR_0042s0190 67.241 232 74 2 230 459 1 232 5.67e-108 319
MsG0180001633.01.T01 MTR_0502s0010 58.264 242 91 5 100 335 1 238 1.35e-95 288
MsG0180001633.01.T01 MTR_7g114420 46.939 294 123 6 165 454 1 265 1.11e-84 261
MsG0180001633.01.T01 MTR_0042s0230 80.952 147 28 0 1 147 1 147 1.28e-82 251
MsG0180001633.01.T01 MTR_8g039950 89.922 129 13 0 1 129 1 129 2.51e-79 242
MsG0180001633.01.T01 MTR_3g098980 32.944 428 268 8 9 430 14 428 1.01e-78 251
MsG0180001633.01.T01 MTR_3g035000 54.132 242 79 5 195 429 39 255 1.06e-76 242
MsG0180001633.01.T01 MTR_8g096530 34.509 397 246 7 1 391 1 389 7.69e-76 244
MsG0180001633.01.T01 MTR_7g027175 34.367 387 240 7 12 391 19 398 3.12e-72 234
MsG0180001633.01.T01 MTR_7g114500 61.333 150 58 0 2 151 3 152 2.90e-63 202
MsG0180001633.01.T01 MTR_3g112180 33.760 391 235 10 17 394 20 399 7.27e-57 195
MsG0180001633.01.T01 MTR_3g051790 60.274 146 58 0 2 147 6 151 4.06e-56 184
MsG0180001633.01.T01 MTR_1g053315 31.151 443 279 15 17 438 26 463 2.55e-55 191
MsG0180001633.01.T01 MTR_4g055170 29.412 442 287 10 16 437 19 455 3.37e-54 188
MsG0180001633.01.T01 MTR_3g071320 30.115 435 273 12 17 433 13 434 2.27e-50 177
MsG0180001633.01.T01 MTR_4g007540 29.464 448 272 16 5 430 1 426 6.96e-48 170
MsG0180001633.01.T01 MTR_2g105330 28.539 445 279 13 5 430 1 425 1.02e-46 167
MsG0180001633.01.T01 MTR_8g075610 30.303 429 274 14 17 434 2 416 2.95e-46 166
MsG0180001633.01.T01 MTR_2g064495 28.315 445 280 13 5 430 1 425 1.47e-45 164
MsG0180001633.01.T01 MTR_7g110610 27.517 447 246 14 5 438 1 382 7.23e-44 159
MsG0180001633.01.T01 MTR_2g015430 29.880 415 276 10 30 434 25 434 2.60e-41 153
MsG0180001633.01.T01 MTR_7g085930 28.842 475 262 17 9 432 6 455 1.01e-40 152
MsG0180001633.01.T01 MTR_7g084940 27.273 385 257 9 17 389 24 397 2.43e-40 150
MsG0180001633.01.T01 MTR_7g085990 28.406 433 242 13 9 390 2 417 1.25e-37 143
MsG0180001633.01.T01 MTR_6g053810 29.167 408 253 15 57 437 64 462 9.34e-37 140
MsG0180001633.01.T01 MTR_7g084910 26.733 404 251 12 1 389 11 384 9.68e-37 140
MsG0180001633.01.T01 MTR_4g127650 27.212 452 278 16 17 434 18 452 1.92e-36 140
MsG0180001633.01.T01 MTR_3g026950 25.728 412 264 11 13 390 6 409 6.29e-36 138
MsG0180001633.01.T01 MTR_3g465930 26.991 452 293 15 16 437 17 461 6.47e-35 135
MsG0180001633.01.T01 MTR_3g465990 26.974 456 284 16 16 437 17 457 2.05e-34 134
MsG0180001633.01.T01 MTR_4g097090 27.152 453 280 16 16 434 16 452 2.08e-34 134
MsG0180001633.01.T01 MTR_3g465980 26.609 466 273 16 16 437 17 457 2.12e-32 128
MsG0180001633.01.T01 MTR_7g086000 27.000 400 239 17 61 422 57 441 2.59e-32 128
MsG0180001633.01.T01 MTR_3g465910 26.477 457 292 15 16 440 17 461 2.81e-32 129
MsG0180001633.01.T01 MTR_4g013050 25.227 440 264 14 12 430 7 402 4.04e-32 127
MsG0180001633.01.T01 MTR_7g056087 26.244 442 280 15 17 432 12 433 8.05e-31 124
MsG0180001633.01.T01 MTR_4g088765 73.973 73 19 0 1 73 1 73 2.75e-30 114
MsG0180001633.01.T01 MTR_3g465880 27.632 456 288 17 16 437 17 464 2.87e-29 120
MsG0180001633.01.T01 MTR_3g049150 24.818 411 273 12 6 388 1 403 1.23e-26 112
MsG0180001633.01.T01 MTR_3g465950 26.901 342 220 9 16 336 17 349 1.60e-25 108
MsG0180001633.01.T01 MTR_5g090830 25.000 460 272 17 7 425 8 435 5.98e-25 107
MsG0180001633.01.T01 MTR_5g090810 24.783 460 273 17 7 425 8 435 4.38e-24 104
MsG0180001633.01.T01 MTR_3g086020 23.853 436 288 16 13 437 9 411 5.10e-24 103
MsG0180001633.01.T01 MTR_5g084870 21.670 443 297 15 15 437 9 421 9.97e-24 103
MsG0180001633.01.T01 MTR_3g450690 25.467 428 238 14 64 448 72 461 1.45e-23 103
MsG0180001633.01.T01 MTR_5g090880 24.750 400 240 14 61 425 64 437 1.76e-23 103
MsG0180001633.01.T01 MTR_3g101960 28.840 319 202 12 23 327 30 337 2.50e-23 102
MsG0180001633.01.T01 MTR_3g101930 28.771 358 209 15 9 334 7 350 3.75e-23 102
MsG0180001633.01.T01 MTR_3g450710 26.065 399 225 15 64 423 65 432 5.67e-23 101
MsG0180001633.01.T01 MTR_4g094835 24.821 419 245 18 46 428 49 433 1.43e-21 97.1
MsG0180001633.01.T01 MTR_4g022290 24.752 404 252 13 23 401 31 407 2.01e-21 96.7
MsG0180001633.01.T01 MTR_0190s0020 26.651 439 250 19 23 428 30 429 2.17e-21 96.7
MsG0180001633.01.T01 MTR_5g084850 22.308 390 263 13 15 386 9 376 2.63e-21 96.3
MsG0180001633.01.T01 MTR_4g094838 23.864 440 272 15 23 438 29 429 3.83e-21 95.9
MsG0180001633.01.T01 MTR_4g022800 26.147 436 261 20 23 428 25 429 4.07e-21 95.9
MsG0180001633.01.T01 MTR_3g102020 27.168 346 198 14 16 327 13 338 5.68e-21 95.5
MsG0180001633.01.T01 MTR_8g041770 24.138 435 282 14 14 428 22 428 6.67e-21 95.1
MsG0180001633.01.T01 MTR_3g101900 24.773 440 252 18 9 399 7 416 9.23e-21 94.7
MsG0180001633.01.T01 MTR_4g094842 24.449 454 289 19 5 428 6 435 9.99e-21 94.7
MsG0180001633.01.T01 MTR_8g079950 21.368 468 318 13 15 459 9 449 2.15e-20 93.6
MsG0180001633.01.T01 MTR_4g094832 25.745 369 224 14 94 438 85 427 2.92e-20 93.2
MsG0180001633.01.T01 MTR_3g101970 28.025 314 198 12 23 327 30 324 5.19e-20 92.4
MsG0180001633.01.T01 MTR_8g079970 22.051 390 271 12 15 386 9 383 5.45e-20 92.4
MsG0180001633.01.T01 MTR_3g088420 24.832 447 258 19 23 435 25 427 1.49e-19 90.9
MsG0180001633.01.T01 MTR_7g026860 25.701 428 269 17 23 428 25 425 1.53e-19 90.9
MsG0180001633.01.T01 MTR_3g102010 25.542 415 243 15 24 399 32 419 1.54e-19 91.3
MsG0180001633.01.T01 MTR_5g026320 25.815 399 254 13 22 395 33 414 4.16e-19 89.7
MsG0180001633.01.T01 MTR_3g465870 28.169 284 180 10 16 282 19 295 5.66e-19 89.4
MsG0180001633.01.T01 MTR_4g022720 24.533 428 271 16 23 428 25 422 8.85e-19 88.6
MsG0180001633.01.T01 MTR_4g022670 25.747 435 263 19 23 428 25 428 1.08e-18 88.6
MsG0180001633.01.T01 MTR_1g094790 22.249 418 281 13 12 401 6 407 8.64e-18 85.9
MsG0180001633.01.T01 MTR_4g022825 25.450 444 252 20 23 428 25 427 7.50e-17 82.8
MsG0180001633.01.T01 MTR_8g467590 23.308 399 259 20 15 386 9 387 2.20e-16 81.6
MsG0180001633.01.T01 MTR_5g084900 21.798 367 232 13 61 417 6 327 3.39e-16 80.1
MsG0180001633.01.T01 MTR_7g114417 56.364 55 23 1 89 142 29 83 2.05e-13 65.9
MsG0180001633.01.T01 MTR_7g114417 65.000 40 14 0 2 41 3 42 9.81e-11 58.5
MsG0180001633.01.T01 MTR_3g051820 49.333 75 36 2 365 438 1 74 1.97e-12 63.5
MsG0180001633.01.T01 MTR_3g049140 27.742 155 94 4 250 388 48 200 6.07e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001633.01.T01 AT5G17540 57.725 466 185 9 1 459 1 461 0.0 519
MsG0180001633.01.T01 AT3G03480 57.366 448 174 12 5 444 15 453 5.43e-168 481
MsG0180001633.01.T01 AT5G63560 33.634 443 268 11 1 435 1 425 6.02e-78 249
MsG0180001633.01.T01 AT5G41040 32.110 436 272 10 9 434 33 454 2.37e-76 246
MsG0180001633.01.T01 AT5G41040 32.110 436 272 10 9 434 17 438 3.02e-76 245
MsG0180001633.01.T01 AT3G48720 31.193 436 282 10 1 430 1 424 6.58e-74 239
MsG0180001633.01.T01 AT3G62160 31.905 420 253 12 5 411 1 400 5.13e-55 189
MsG0180001633.01.T01 AT1G27620 28.995 438 282 11 10 435 10 430 1.34e-54 189
MsG0180001633.01.T01 AT2G40230 33.333 387 234 11 17 388 13 390 2.58e-50 177
MsG0180001633.01.T01 AT1G28680 28.924 446 296 13 16 445 11 451 6.48e-48 171
MsG0180001633.01.T01 AT2G19070 28.506 435 260 12 35 434 29 447 2.37e-47 169
MsG0180001633.01.T01 AT1G65450 28.125 448 286 13 1 430 12 441 4.08e-45 163
MsG0180001633.01.T01 AT1G03390 30.317 442 285 13 7 434 23 455 6.23e-45 163
MsG0180001633.01.T01 AT5G48930 28.736 435 278 12 17 434 11 430 1.06e-44 162
MsG0180001633.01.T01 AT3G47170 28.243 478 276 19 7 438 10 466 6.28e-44 160
MsG0180001633.01.T01 AT5G57840 27.376 442 275 11 17 432 11 432 7.41e-44 160
MsG0180001633.01.T01 AT5G07080 29.185 466 266 16 7 437 12 448 1.84e-43 159
MsG0180001633.01.T01 AT1G28680 31.686 344 221 10 16 349 11 350 3.52e-43 157
MsG0180001633.01.T01 AT2G25150 29.596 446 283 17 15 439 19 454 5.82e-37 141
MsG0180001633.01.T01 AT2G23510 27.897 466 287 17 1 437 5 450 7.13e-36 138
MsG0180001633.01.T01 AT1G78990 27.735 393 245 13 62 433 65 439 8.55e-32 127
MsG0180001633.01.T01 AT1G31490 25.428 409 253 14 6 387 3 386 1.18e-29 120
MsG0180001633.01.T01 AT1G32910 26.425 386 232 15 62 423 63 420 8.27e-26 110
MsG0180001633.01.T01 AT5G07860 25.054 459 288 14 4 435 12 441 6.33e-25 107
MsG0180001633.01.T01 AT3G50270 26.667 420 237 17 23 401 30 419 2.43e-24 105
MsG0180001633.01.T01 AT3G26040 23.618 398 257 15 15 388 9 383 9.58e-24 103
MsG0180001633.01.T01 AT4G15390 24.183 459 285 17 3 430 2 428 1.42e-23 103
MsG0180001633.01.T01 AT4G15390 24.183 459 285 17 3 430 2 428 1.42e-23 103
MsG0180001633.01.T01 AT1G65450 26.599 297 189 8 158 438 2 285 7.58e-23 98.6
MsG0180001633.01.T01 AT5G07870 26.277 411 257 15 64 446 72 464 8.59e-23 100
MsG0180001633.01.T01 AT5G07850 27.335 439 247 19 4 399 12 421 1.26e-22 100
MsG0180001633.01.T01 AT4G31910 26.829 410 267 13 48 430 48 451 2.21e-22 99.8
MsG0180001633.01.T01 AT5G42830 26.366 421 248 14 15 399 23 417 4.69e-22 98.6
MsG0180001633.01.T01 AT5G38130 25.313 399 251 14 23 396 48 424 5.29e-22 98.6
MsG0180001633.01.T01 AT3G50280 26.515 396 250 16 23 395 28 405 7.87e-22 98.2
MsG0180001633.01.T01 AT1G24430 24.569 464 276 19 12 445 8 427 9.98e-22 97.8
MsG0180001633.01.T01 AT1G24420 26.933 401 233 18 15 386 11 380 3.53e-21 95.9
MsG0180001633.01.T01 AT1G24420 26.933 401 233 18 15 386 11 380 3.53e-21 95.9
MsG0180001633.01.T01 AT5G16410 26.074 349 221 13 62 388 89 422 5.08e-21 95.9
MsG0180001633.01.T01 AT3G50300 26.966 356 221 15 64 392 59 402 3.86e-20 93.2
MsG0180001633.01.T01 AT5G23970 25.670 448 273 19 13 438 7 416 7.76e-19 89.0
MsG0180001633.01.T01 AT5G67160 25.428 409 242 15 58 435 50 426 1.38e-18 88.2
MsG0180001633.01.T01 AT5G47950 23.767 446 267 18 9 427 6 405 5.10e-15 77.4
MsG0180001633.01.T01 AT5G23940 23.581 458 254 20 41 438 28 449 4.37e-14 74.7
MsG0180001633.01.T01 AT3G50280 24.907 269 184 10 136 391 8 271 3.16e-13 70.9
MsG0180001633.01.T01 AT3G50290 25.000 224 134 8 138 342 16 224 9.51e-12 65.9
MsG0180001633.01.T01 AT3G23840 26.872 227 137 10 80 296 81 288 8.65e-11 64.3

Find 96 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGTGATGATTTCGAATT+TGG 0.114001 1:+24339787 None:intergenic
GGGTCTTTCCCTTCCATATT+TGG 0.169165 1:+24342317 None:intergenic
ATCCATTTGCAGGTAGATTA+AGG 0.198110 1:-24342247 MsG0180001633.01.T01:CDS
TTTGATGGTCTTACAAATTC+AGG 0.203685 1:+24342434 None:intergenic
GAATTAATGATAGCATATTT+TGG 0.210015 1:+24339209 None:intergenic
GTATTCAGTTGCGGATTTAA+TGG 0.220815 1:-24339528 MsG0180001633.01.T01:CDS
TTTGAAAACGTAACCCTTCT+TGG 0.271683 1:+24342369 None:intergenic
CGAACTTCCTCGTCCGTATC+TGG 0.272136 1:+24339731 None:intergenic
GGACTTAGAGATGTTGATTT+TGG 0.272907 1:-24339440 MsG0180001633.01.T01:CDS
CACCCAAGGCACTCATGAAT+TGG 0.305268 1:+24340041 None:intergenic
CATTTCATCTAAGGGTATAA+TGG 0.312537 1:+24339889 None:intergenic
TTATAAATATGATCCAAATA+TGG 0.321793 1:-24342330 MsG0180001633.01.T01:CDS
TTGGATCATCTTTAGTAGAT+TGG 0.332279 1:+24339228 None:intergenic
AAACTAATTGAAAATCCATT+AGG 0.336479 1:-24339605 MsG0180001633.01.T01:CDS
GATGTTAGTTTGAAAGAATT+TGG 0.347283 1:-24342155 MsG0180001633.01.T01:CDS
GCGTTTCCATAGTAACCTTT+TGG 0.359409 1:+24339662 None:intergenic
CCTGCAGTTGTAATTGCAAC+AGG 0.365928 1:+24339629 None:intergenic
AACTCAAGTGCATACCCTAA+TGG 0.368393 1:+24339590 None:intergenic
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 1:-24339330 MsG0180001633.01.T01:CDS
AACTAATTGAAAATCCATTA+GGG 0.389241 1:-24339604 MsG0180001633.01.T01:CDS
CCGTTGCCAAAAGGTTACTA+TGG 0.390644 1:-24339668 MsG0180001633.01.T01:CDS
CGAATTTGGATTGTTGTTGT+AGG 0.393458 1:+24339801 None:intergenic
TCACTGTGAATAAAAGAGAT+TGG 0.393886 1:+24342468 None:intergenic
CATTATACCCTTAGATGAAA+TGG 0.396592 1:-24339888 MsG0180001633.01.T01:CDS
GCGGTGGACCATTTCATCTA+AGG 0.404967 1:+24339880 None:intergenic
GTCCAATTCATGAGTGCCTT+GGG 0.406998 1:-24340043 MsG0180001633.01.T01:CDS
TCCATTTGCAGGTAGATTAA+GGG 0.408450 1:-24342246 MsG0180001633.01.T01:CDS
CCTTGGGTGAAATTTCTTGC+GGG 0.426188 1:-24340027 MsG0180001633.01.T01:CDS
TGCGGATTTAATGGTTATCA+AGG 0.430701 1:-24339519 MsG0180001633.01.T01:CDS
AAATCATCACTGCATGCCTT+TGG 0.430886 1:-24339778 MsG0180001633.01.T01:CDS
GATGAGCGATGCGATGGGTT+TGG 0.433400 1:-24340065 MsG0180001633.01.T01:CDS
AGGTCCTGCTAGGAAACTTA+TGG 0.433584 1:-24342222 MsG0180001633.01.T01:CDS
CCTGTTGCAATTACAACTGC+AGG 0.441218 1:-24339629 MsG0180001633.01.T01:CDS
TATTTATAAAATTGTATCAC+TGG 0.450663 1:+24342344 None:intergenic
CACTCCAATCCTTCTTATCC+AGG 0.451699 1:-24342057 MsG0180001633.01.T01:intron
TCCCTTAATCTACCTGCAAA+TGG 0.452547 1:+24342245 None:intergenic
GGTCCAATTCATGAGTGCCT+TGG 0.454709 1:-24340044 MsG0180001633.01.T01:CDS
CACTGTGAATAAAAGAGATT+GGG 0.457495 1:+24342469 None:intergenic
CCATACGATGAGCGATGCGA+TGG 0.473629 1:-24340071 MsG0180001633.01.T01:CDS
AATAATATACCTGGATAAGA+AGG 0.480629 1:+24342048 None:intergenic
CCATCGCATCGCTCATCGTA+TGG 0.492481 1:+24340071 None:intergenic
TTGATGGTCTTACAAATTCA+GGG 0.497631 1:+24342435 None:intergenic
AAACTTATGGTGGATTGCAC+TGG 0.500723 1:-24342209 MsG0180001633.01.T01:CDS
AACTCGTCCAAACAAGGAAA+AGG 0.509960 1:+24342116 None:intergenic
CGATGAGTGCATGTTACTCT+TGG 0.517477 1:+24339944 None:intergenic
TATACCTGGATAAGAAGGAT+TGG 0.520763 1:+24342053 None:intergenic
TTGTTTGCCAACTCAAGCCA+TGG 0.521796 1:-24339297 MsG0180001633.01.T01:CDS
GTATATGGAGGACCAGCTAC+AGG 0.522562 1:-24339404 MsG0180001633.01.T01:CDS
GCCTTGGGTGAAATTTCTTG+CGG 0.522636 1:-24340028 MsG0180001633.01.T01:CDS
TGCCATACCGGTGAGATTGA+AGG 0.523692 1:+24339995 None:intergenic
GAGCAAGTTCCTGACACAAA+AGG 0.530837 1:-24339914 MsG0180001633.01.T01:CDS
ACACCAACTCCTCCTGTAGC+TGG 0.532688 1:+24339392 None:intergenic
CTGGTTGTAATGCGATTGTA+CGG 0.537038 1:+24339750 None:intergenic
AAATATGATCCAAATATGGA+AGG 0.544870 1:-24342326 MsG0180001633.01.T01:CDS
GTGTCTGATGTTACACATGC+TGG 0.545058 1:-24339461 MsG0180001633.01.T01:CDS
CGGTGGACCATTTCATCTAA+GGG 0.545372 1:+24339881 None:intergenic
TGAGTGCATGTTACTCTTGG+TGG 0.546616 1:+24339947 None:intergenic
AACCTCTCCATGGCTTGAGT+TGG 0.550792 1:+24339290 None:intergenic
AATATGATCCAAATATGGAA+GGG 0.552554 1:-24342325 MsG0180001633.01.T01:CDS
ATAGAGAGCTTCTAAACGCA+AGG 0.554177 1:-24339973 MsG0180001633.01.T01:CDS
CAGATATAGATGACCAAGAA+GGG 0.559168 1:-24342382 MsG0180001633.01.T01:CDS
AACCTTCAATCTCACCGGTA+TGG 0.559901 1:-24339997 MsG0180001633.01.T01:CDS
CTCTTTAACGAACCTCTCCA+TGG 0.560979 1:+24339280 None:intergenic
CGATTGTACGGCAACGCCAA+AGG 0.564878 1:+24339762 None:intergenic
TCAGATATAGATGACCAAGA+AGG 0.565827 1:-24342383 MsG0180001633.01.T01:CDS
AGAATACATGTATTCAGTTG+CGG 0.568895 1:-24339537 MsG0180001633.01.T01:CDS
GGACCAGCTACAGGAGGAGT+TGG 0.569672 1:-24339395 MsG0180001633.01.T01:CDS
TCCACCATAAGTTTCCTAGC+AGG 0.571714 1:+24342218 None:intergenic
CGAAGTGCAGATAACTCGGT+TGG 0.572288 1:+24339842 None:intergenic
AGAACGAAGTGCAGATAACT+CGG 0.585268 1:+24339838 None:intergenic
AATCGCATTACAACCAGATA+CGG 0.585517 1:-24339744 MsG0180001633.01.T01:CDS
GCGGATTTAATGGTTATCAA+GGG 0.587368 1:-24339518 MsG0180001633.01.T01:CDS
AGAAGCTCTCTATGCCATAC+CGG 0.587394 1:+24339983 None:intergenic
GAATGAACCTTCAATCTCAC+CGG 0.587572 1:-24340002 MsG0180001633.01.T01:CDS
GATTAAGGGAAGGTCCTGCT+AGG 0.590882 1:-24342232 MsG0180001633.01.T01:CDS
TGCCAACTCAAGCCATGGAG+AGG 0.591210 1:-24339292 MsG0180001633.01.T01:CDS
AAAAGAAACTCGTCCAAACA+AGG 0.593076 1:+24342110 None:intergenic
ATATAAAAGCTAGCAACACC+AGG 0.611199 1:+24339365 None:intergenic
CATACGATGAGCGATGCGAT+GGG 0.611919 1:-24340070 MsG0180001633.01.T01:CDS
CCCGCAAGAAATTTCACCCA+AGG 0.612458 1:+24340027 None:intergenic
TGATGGTCTTACAAATTCAG+GGG 0.623986 1:+24342436 None:intergenic
GGAGGAGTTGGTGTTACACC+TGG 0.626042 1:-24339383 MsG0180001633.01.T01:CDS
GCTTGAGTTGGCAAACAAAG+TGG 0.628285 1:+24339302 None:intergenic
TCCTGCTAGGAAACTTATGG+TGG 0.635781 1:-24342219 MsG0180001633.01.T01:CDS
TCGTCCAAACAAGGAAAAGG+AGG 0.640474 1:+24342119 None:intergenic
ATTCTCACCACGGTAAAATG+TGG 0.643343 1:+24339491 None:intergenic
ATGGTGGATTGCACTGGAGA+AGG 0.645652 1:-24342203 MsG0180001633.01.T01:CDS
GATTGTTGTTGTAGGTGACG+TGG 0.649549 1:+24339809 None:intergenic
TAGAGAGCTTCTAAACGCAA+GGG 0.655440 1:-24339972 MsG0180001633.01.T01:CDS
TTTGCAGGTAGATTAAGGGA+AGG 0.667024 1:-24342242 MsG0180001633.01.T01:CDS
TATGGAGGACCAGCTACAGG+AGG 0.683939 1:-24339401 MsG0180001633.01.T01:CDS
ATTACAACCAGATACGGACG+AGG 0.685001 1:-24339738 MsG0180001633.01.T01:CDS
TTAATCACATCTGAATAACC+AGG 0.690578 1:+24342080 None:intergenic
GTAACACGTCTCAAGTGTGG+TGG 0.692143 1:-24340118 MsG0180001633.01.T01:CDS
CAGGTAACACGTCTCAAGTG+TGG 0.695040 1:-24340121 MsG0180001633.01.T01:CDS
CACTAAGTACATTCTCACCA+CGG 0.698784 1:+24339481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAAATTAATATT+CGG + Chr1:24340174-24340193 None:intergenic 0.0%
!! ACTAGTTATTTAATTAAAAA+AGG - Chr1:24339872-24339891 MsG0180001633.01.T01:CDS 10.0%
!! ATCAAAATAAAATTATGATT+AGG - Chr1:24341134-24341153 MsG0180001633.01.T01:intron 10.0%
!! TATATAATATATGTAAAGTT+CGG + Chr1:24339724-24339743 None:intergenic 10.0%
!!! CAAAATTGAATTTTAAATTA+AGG - Chr1:24340905-24340924 MsG0180001633.01.T01:intron 10.0%
!! AAAACTCAAAATACAAAATA+TGG + Chr1:24340559-24340578 None:intergenic 15.0%
!! ATATAATATATGTAAAGTTC+GGG + Chr1:24339723-24339742 None:intergenic 15.0%
!! TAGTTATTCAAATTTATTAC+TGG - Chr1:24340016-24340035 MsG0180001633.01.T01:CDS 15.0%
!! TATATATATATAGAAACAAG+TGG - Chr1:24340869-24340888 MsG0180001633.01.T01:intron 15.0%
!! TATTTATAAAATTGTATCAC+TGG + Chr1:24339304-24339323 None:intergenic 15.0%
!! TTATAAATATGATCCAAATA+TGG - Chr1:24339315-24339334 MsG0180001633.01.T01:CDS 15.0%
!! TTGAATATAATTACTTCAAA+TGG + Chr1:24340717-24340736 None:intergenic 15.0%
!!! AAGATTTGAGTTAATTAATT+AGG + Chr1:24341064-24341083 None:intergenic 15.0%
!!! TAAGTTTGCTTATATTTTAT+TGG + Chr1:24339828-24339847 None:intergenic 15.0%
!!! TTAAAATTTAAGATACGATA+CGG + Chr1:24340623-24340642 None:intergenic 15.0%
!! AAACTAATTGAAAATCCATT+AGG - Chr1:24342040-24342059 MsG0180001633.01.T01:intron 20.0%
!! AAACTCAAAAGCAAAAAAAA+TGG + Chr1:24340532-24340551 None:intergenic 20.0%
!! AACTAATTGAAAATCCATTA+GGG - Chr1:24342041-24342060 MsG0180001633.01.T01:intron 20.0%
!! AATCACAAGTGTTTAATTAT+GGG - Chr1:24341092-24341111 MsG0180001633.01.T01:intron 20.0%
!! ATGATTAGGAAAATACTAAA+TGG - Chr1:24341148-24341167 MsG0180001633.01.T01:intron 20.0%
!! GAAAATATCAATAATATACC+TGG + Chr1:24339609-24339628 None:intergenic 20.0%
!! TATAAATGGATAGCATTTAA+AGG - Chr1:24339972-24339991 MsG0180001633.01.T01:CDS 20.0%
!! TATAATATATGTAAAGTTCG+GGG + Chr1:24339722-24339741 None:intergenic 20.0%
!! TTCTTGTAAAAGAATAAATC+AGG + Chr1:24341261-24341280 None:intergenic 20.0%
!!! AGTCTTTGATTTTCTTTTTA+TGG - Chr1:24341402-24341421 MsG0180001633.01.T01:intron 20.0%
!!! ATATTTTCATGATGTATCAA+AGG - Chr1:24339621-24339640 MsG0180001633.01.T01:CDS 20.0%
!!! GAATTAATGATAGCATATTT+TGG + Chr1:24342439-24342458 None:intergenic 20.0%
!!! GTCTTTGATTTTCTTTTTAT+GGG - Chr1:24341403-24341422 MsG0180001633.01.T01:intron 20.0%
!!! TAATTATATTCAAAGTGTCT+TGG - Chr1:24340724-24340743 MsG0180001633.01.T01:intron 20.0%
!!! TGCTTATATTTTATTGGAAA+GGG + Chr1:24339822-24339841 None:intergenic 20.0%
!!! TTGCTTATATTTTATTGGAA+AGG + Chr1:24339823-24339842 None:intergenic 20.0%
! AAATATGATCCAAATATGGA+AGG - Chr1:24339319-24339338 MsG0180001633.01.T01:CDS 25.0%
! AATAATATACCTGGATAAGA+AGG + Chr1:24339600-24339619 None:intergenic 25.0%
! AATATGATCCAAATATGGAA+GGG - Chr1:24339320-24339339 MsG0180001633.01.T01:CDS 25.0%
! ACAGACATAGAAAAACAATA+AGG + Chr1:24340492-24340511 None:intergenic 25.0%
! ATACCTTTCAAAAATGCTAA+AGG - Chr1:24342301-24342320 MsG0180001633.01.T01:CDS 25.0%
! ATCACAAGTGTTTAATTATG+GGG - Chr1:24341093-24341112 MsG0180001633.01.T01:intron 25.0%
! CAATCACAAGTGTTTAATTA+TGG - Chr1:24341091-24341110 MsG0180001633.01.T01:intron 25.0%
! CCAAATATAATAGAAACATC+AGG + Chr1:24340272-24340291 None:intergenic 25.0%
! TATCAAACAAGACAAAACAT+CGG + Chr1:24341330-24341349 None:intergenic 25.0%
! TCGAATAGAATTGCTATAAA+TGG - Chr1:24339958-24339977 MsG0180001633.01.T01:CDS 25.0%
! TCGATATTCAAACATTAACT+CGG + Chr1:24339942-24339961 None:intergenic 25.0%
! TGTAAGAGATGTGATATATA+TGG + Chr1:24341483-24341502 None:intergenic 25.0%
!! CAGATGTATTTGAAAAGTAT+CGG + Chr1:24340206-24340225 None:intergenic 25.0%
!! CCTGATGTTTCTATTATATT+TGG - Chr1:24340269-24340288 MsG0180001633.01.T01:intron 25.0%
!! CTTTTCTAATAACATCAACA+GGG + Chr1:24339351-24339370 None:intergenic 25.0%
!! GATACTTTTCAAATACATCT+GGG - Chr1:24340205-24340224 MsG0180001633.01.T01:intron 25.0%
!! GATGTTAGTTTGAAAGAATT+TGG - Chr1:24339490-24339509 MsG0180001633.01.T01:CDS 25.0%
!! GCAAAACAAACATTCTTTTA+AGG + Chr1:24342473-24342492 None:intergenic 25.0%
!!! AATTTTATTTCATGAGGTGT+TGG + Chr1:24339238-24339257 None:intergenic 25.0%
!!! ATTGTTTTTCTATGTCTGTT+TGG - Chr1:24340493-24340512 MsG0180001633.01.T01:intron 25.0%
!!! CTATTGTTTTATTGTGTGAA+GGG - Chr1:24340451-24340470 MsG0180001633.01.T01:intron 25.0%
!!! GAGAGTAATTTTATTTCATG+AGG + Chr1:24339244-24339263 None:intergenic 25.0%
!!! TCAATCATTTTGAAGTATCT+AGG + Chr1:24340082-24340101 None:intergenic 25.0%
ACCAACAATCCAATACTTAA+TGG - Chr1:24341349-24341368 MsG0180001633.01.T01:intron 30.0%
AGAATACATGTATTCAGTTG+CGG - Chr1:24342108-24342127 MsG0180001633.01.T01:CDS 30.0%
ATACTTTCCTGATACGTATT+GGG + Chr1:24340151-24340170 None:intergenic 30.0%
ATCATATATCTAGGCTTCAT+AGG - Chr1:24340689-24340708 MsG0180001633.01.T01:intron 30.0%
ATTGAATTGTAACTATGTGC+AGG - Chr1:24341505-24341524 MsG0180001633.01.T01:intron 30.0%
CAACAATCCAATACTTAATG+GGG - Chr1:24341351-24341370 MsG0180001633.01.T01:intron 30.0%
CACTGTGAATAAAAGAGATT+GGG + Chr1:24339179-24339198 None:intergenic 30.0%
CATTATACCCTTAGATGAAA+TGG - Chr1:24341757-24341776 MsG0180001633.01.T01:intron 30.0%
CCAACAATCCAATACTTAAT+GGG - Chr1:24341350-24341369 MsG0180001633.01.T01:intron 30.0%
CCTAGATATATGATACGATA+AGG + Chr1:24340683-24340702 None:intergenic 30.0%
CCTTATCGTATCATATATCT+AGG - Chr1:24340680-24340699 MsG0180001633.01.T01:intron 30.0%
GAAACTTGCATGTTGTTAAA+GGG - Chr1:24341425-24341444 MsG0180001633.01.T01:intron 30.0%
GATACGATAAGGATATGATA+TGG + Chr1:24340672-24340691 None:intergenic 30.0%
TCACTGTGAATAAAAGAGAT+TGG + Chr1:24339180-24339199 None:intergenic 30.0%
TGGTCACCACAAAAAAAAAT+CGG + Chr1:24339690-24339709 None:intergenic 30.0%
TTAATCACATCTGAATAACC+AGG + Chr1:24339568-24339587 None:intergenic 30.0%
TTGGATCATCTTTAGTAGAT+TGG + Chr1:24342420-24342439 None:intergenic 30.0%
TTTCAAAAATGCTAAAGGAG+AGG - Chr1:24342306-24342325 MsG0180001633.01.T01:CDS 30.0%
! CATTTCATCTAAGGGTATAA+TGG + Chr1:24341759-24341778 None:intergenic 30.0%
! CGATACTTTTCAAATACATC+TGG - Chr1:24340204-24340223 MsG0180001633.01.T01:intron 30.0%
! CTTTTAACCCCATTAAGTAT+TGG + Chr1:24341361-24341380 None:intergenic 30.0%
! GCTTTTCTAATAACATCAAC+AGG + Chr1:24339352-24339371 None:intergenic 30.0%
! TCTCCTTTAGCATTTTTGAA+AGG + Chr1:24342307-24342326 None:intergenic 30.0%
! TTGATGGTCTTACAAATTCA+GGG + Chr1:24339213-24339232 None:intergenic 30.0%
! TTTGATGGTCTTACAAATTC+AGG + Chr1:24339214-24339233 None:intergenic 30.0%
!! GCTATTGTTTTATTGTGTGA+AGG - Chr1:24340450-24340469 MsG0180001633.01.T01:intron 30.0%
!! GTGTTTTATTATCCATTTGC+AGG - Chr1:24339388-24339407 MsG0180001633.01.T01:CDS 30.0%
!!! ATAGCACCGATTTTTTTTTG+TGG - Chr1:24339681-24339700 MsG0180001633.01.T01:CDS 30.0%
!!! TAGAGATGTTGATTTTGGTT+GGG - Chr1:24342210-24342229 MsG0180001633.01.T01:CDS 30.0%
!!! TTAGAGATGTTGATTTTGGT+TGG - Chr1:24342209-24342228 MsG0180001633.01.T01:CDS 30.0%
AAAAATGCTAAAGGAGAGGA+AGG - Chr1:24342310-24342329 MsG0180001633.01.T01:CDS 35.0%
AAAAGAAACTCGTCCAAACA+AGG + Chr1:24339538-24339557 None:intergenic 35.0%
AACGAAGCAATGTTATAGCA+TGG + Chr1:24340777-24340796 None:intergenic 35.0%
AATCGCATTACAACCAGATA+CGG - Chr1:24341901-24341920 MsG0180001633.01.T01:intron 35.0%
AGTGTCTTGGACACTAAATA+TGG - Chr1:24340737-24340756 MsG0180001633.01.T01:intron 35.0%
ATATAAAAGCTAGCAACACC+AGG + Chr1:24342283-24342302 None:intergenic 35.0%
ATCCATTTGCAGGTAGATTA+AGG - Chr1:24339398-24339417 MsG0180001633.01.T01:CDS 35.0%
CAGATATAGATGACCAAGAA+GGG - Chr1:24339263-24339282 MsG0180001633.01.T01:CDS 35.0%
GATACTTTCCTGATACGTAT+TGG + Chr1:24340152-24340171 None:intergenic 35.0%
GCGGATTTAATGGTTATCAA+GGG - Chr1:24342127-24342146 MsG0180001633.01.T01:CDS 35.0%
GGAAACTTGCATGTTGTTAA+AGG - Chr1:24341424-24341443 MsG0180001633.01.T01:intron 35.0%
GTATTCAGTTGCGGATTTAA+TGG - Chr1:24342117-24342136 MsG0180001633.01.T01:CDS 35.0%
TATACCTGGATAAGAAGGAT+TGG + Chr1:24339595-24339614 None:intergenic 35.0%
TCAGATATAGATGACCAAGA+AGG - Chr1:24339262-24339281 MsG0180001633.01.T01:CDS 35.0%
TCCATTTGCAGGTAGATTAA+GGG - Chr1:24339399-24339418 MsG0180001633.01.T01:CDS 35.0%
TGCAGTGATGATTTCGAATT+TGG + Chr1:24341861-24341880 None:intergenic 35.0%
TGCGGATTTAATGGTTATCA+AGG - Chr1:24342126-24342145 MsG0180001633.01.T01:CDS 35.0%
TTAAAAAAGGTTCAGTCCAG+TGG - Chr1:24339885-24339904 MsG0180001633.01.T01:CDS 35.0%
TTTCTATGTCTGTTTGGTCT+AGG - Chr1:24340499-24340518 MsG0180001633.01.T01:intron 35.0%
TTTGAAAACGTAACCCTTCT+TGG + Chr1:24339279-24339298 None:intergenic 35.0%
! ATAATGGTTCCTTTTGTGTC+AGG + Chr1:24341743-24341762 None:intergenic 35.0%
! CAAATACATCTGGGATACAA+GGG - Chr1:24340214-24340233 MsG0180001633.01.T01:intron 35.0%
! CGAATTTGGATTGTTGTTGT+AGG + Chr1:24341847-24341866 None:intergenic 35.0%
! TCAAATACATCTGGGATACA+AGG - Chr1:24340213-24340232 MsG0180001633.01.T01:intron 35.0%
! TGATGGTCTTACAAATTCAG+GGG + Chr1:24339212-24339231 None:intergenic 35.0%
!! CCCATTAAGTATTGGATTGT+TGG + Chr1:24341353-24341372 None:intergenic 35.0%
!!! AGAGATGTTGATTTTGGTTG+GGG - Chr1:24342211-24342230 MsG0180001633.01.T01:CDS 35.0%
!!! GGACTTAGAGATGTTGATTT+TGG - Chr1:24342205-24342224 MsG0180001633.01.T01:CDS 35.0%
!!! TTTTTTGTGGTGACCAGAAT+TGG - Chr1:24339694-24339713 MsG0180001633.01.T01:CDS 35.0%
AAATCATCACTGCATGCCTT+TGG - Chr1:24341867-24341886 MsG0180001633.01.T01:intron 40.0%
AACTCAAGTGCATACCCTAA+TGG + Chr1:24342058-24342077 None:intergenic 40.0%
AACTCGTCCAAACAAGGAAA+AGG + Chr1:24339532-24339551 None:intergenic 40.0%
AAGACAAAACATCGGAGAAG+TGG + Chr1:24341322-24341341 None:intergenic 40.0%
ACACAGAGACACAAAACAGA+CGG + Chr1:24340415-24340434 None:intergenic 40.0%
AGAACGAAGTGCAGATAACT+CGG + Chr1:24341810-24341829 None:intergenic 40.0%
ATAGAGAGCTTCTAAACGCA+AGG - Chr1:24341672-24341691 MsG0180001633.01.T01:intron 40.0%
ATCTAGGCTTCATCAGAGAA+TGG + Chr1:24340066-24340085 None:intergenic 40.0%
ATTCTCACCACGGTAAAATG+TGG + Chr1:24342157-24342176 None:intergenic 40.0%
CACTAAGTACATTCTCACCA+CGG + Chr1:24342167-24342186 None:intergenic 40.0%
CTGGTTGTAATGCGATTGTA+CGG + Chr1:24341898-24341917 None:intergenic 40.0%
GAATGAACCTTCAATCTCAC+CGG - Chr1:24341643-24341662 MsG0180001633.01.T01:intron 40.0%
GATACTTCCCAATACGTATC+AGG - Chr1:24340141-24340160 MsG0180001633.01.T01:intron 40.0%
GATGTTGAGTCTAGTGAAAG+AGG + Chr1:24340817-24340836 None:intergenic 40.0%
TAAACTCTAACCTCATCCAC+TGG + Chr1:24339904-24339923 None:intergenic 40.0%
TAGAGAGCTTCTAAACGCAA+GGG - Chr1:24341673-24341692 MsG0180001633.01.T01:intron 40.0%
TCCCTTAATCTACCTGCAAA+TGG + Chr1:24339403-24339422 None:intergenic 40.0%
TTGGACCGAAGAAAAAAGAG+CGG + Chr1:24341787-24341806 None:intergenic 40.0%
TTTGCAGGTAGATTAAGGGA+AGG - Chr1:24339403-24339422 MsG0180001633.01.T01:CDS 40.0%
! ATAGTAACCTTTTGGCAACG+GGG + Chr1:24341978-24341997 None:intergenic 40.0%
! CATAGTAACCTTTTGGCAAC+GGG + Chr1:24341979-24341998 None:intergenic 40.0%
! CCATAGTAACCTTTTGGCAA+CGG + Chr1:24341980-24341999 None:intergenic 40.0%
! GAGTTTCTTTTCGATGTTCC+TGG - Chr1:24339547-24339566 MsG0180001633.01.T01:CDS 40.0%
! GCGTTTCCATAGTAACCTTT+TGG + Chr1:24341986-24342005 None:intergenic 40.0%
! GTATCGGTATAGGATACACA+GGG + Chr1:24340115-24340134 None:intergenic 40.0%
! TATCGAGCATGTATCGGTAT+AGG + Chr1:24340125-24340144 None:intergenic 40.0%
! TCAACCTCCTTTTCCTTGTT+TGG - Chr1:24339522-24339541 MsG0180001633.01.T01:CDS 40.0%
! TGTATCGGTATAGGATACAC+AGG + Chr1:24340116-24340135 None:intergenic 40.0%
!! AAACTTATGGTGGATTGCAC+TGG - Chr1:24339436-24339455 MsG0180001633.01.T01:CDS 40.0%
!!! GAGATGTTGATTTTGGTTGG+GGG - Chr1:24342212-24342231 MsG0180001633.01.T01:CDS 40.0%
!!! TCATGAGGTGTTGGTTTTGA+TGG + Chr1:24339229-24339248 None:intergenic 40.0%
AAAGTTCGGGGTTCCAATTC+TGG + Chr1:24339710-24339729 None:intergenic 45.0%
AACCTTCAATCTCACCGGTA+TGG - Chr1:24341648-24341667 MsG0180001633.01.T01:intron 45.0%
AGAAGCTCTCTATGCCATAC+CGG + Chr1:24341665-24341684 None:intergenic 45.0%
AGGTCCTGCTAGGAAACTTA+TGG - Chr1:24339423-24339442 MsG0180001633.01.T01:CDS 45.0%
ATTACAACCAGATACGGACG+AGG - Chr1:24341907-24341926 MsG0180001633.01.T01:intron 45.0%
CACTCCAATCCTTCTTATCC+AGG - Chr1:24339588-24339607 MsG0180001633.01.T01:CDS 45.0%
CCGTTGCCAAAAGGTTACTA+TGG - Chr1:24341977-24341996 MsG0180001633.01.T01:intron 45.0%
CCTGCAGTTGTAATTGCAAC+AGG + Chr1:24342019-24342038 None:intergenic 45.0%
CCTGTTGCAATTACAACTGC+AGG - Chr1:24342016-24342035 MsG0180001633.01.T01:intron 45.0%
CCTTGGGTGAAATTTCTTGC+GGG - Chr1:24341618-24341637 MsG0180001633.01.T01:intron 45.0%
CGATGAGTGCATGTTACTCT+TGG + Chr1:24341704-24341723 None:intergenic 45.0%
CGGTGGACCATTTCATCTAA+GGG + Chr1:24341767-24341786 None:intergenic 45.0%
CTCTTTAACGAACCTCTCCA+TGG + Chr1:24342368-24342387 None:intergenic 45.0%
GAGCAAGTTCCTGACACAAA+AGG - Chr1:24341731-24341750 MsG0180001633.01.T01:intron 45.0%
GCCTTGGGTGAAATTTCTTG+CGG - Chr1:24341617-24341636 MsG0180001633.01.T01:intron 45.0%
GGGTCTTTCCCTTCCATATT+TGG + Chr1:24339331-24339350 None:intergenic 45.0%
GTCCAATTCATGAGTGCCTT+GGG - Chr1:24341602-24341621 MsG0180001633.01.T01:intron 45.0%
GTGTCTGATGTTACACATGC+TGG - Chr1:24342184-24342203 MsG0180001633.01.T01:CDS 45.0%
TCCACCATAAGTTTCCTAGC+AGG + Chr1:24339430-24339449 None:intergenic 45.0%
TCCTGCTAGGAAACTTATGG+TGG - Chr1:24339426-24339445 MsG0180001633.01.T01:CDS 45.0%
TCGTCCAAACAAGGAAAAGG+AGG + Chr1:24339529-24339548 None:intergenic 45.0%
TGAGTGCATGTTACTCTTGG+TGG + Chr1:24341701-24341720 None:intergenic 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG - Chr1:24342315-24342334 MsG0180001633.01.T01:CDS 45.0%
TTGTTTGCCAACTCAAGCCA+TGG - Chr1:24342348-24342367 MsG0180001633.01.T01:CDS 45.0%
! GATTGTTGTTGTAGGTGACG+TGG + Chr1:24341839-24341858 None:intergenic 45.0%
! TAGTAACCTTTTGGCAACGG+GGG + Chr1:24341977-24341996 None:intergenic 45.0%
! TCTGGGATACAAGGGATATG+CGG - Chr1:24340222-24340241 MsG0180001633.01.T01:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + Chr1:24339751-24339770 None:intergenic 45.0%
!! GCTTGAGTTGGCAAACAAAG+TGG + Chr1:24342346-24342365 None:intergenic 45.0%
!! GGGAAGTATCGAGCATGTAT+CGG + Chr1:24340131-24340150 None:intergenic 45.0%
!!! GTCCACCGCTCTTTTTTCTT+CGG - Chr1:24341779-24341798 MsG0180001633.01.T01:intron 45.0%
!! TTTGATAAATTAATTAAAAT+TGG + Chr1:24341120-24341139 None:intergenic 5.0%
!!! AACTATTTTATTTTATTTTT+TGG + Chr1:24340001-24340020 None:intergenic 5.0%
AACCTCTCCATGGCTTGAGT+TGG + Chr1:24342358-24342377 None:intergenic 50.0%
AAGGTTCAGTCCAGTGGATG+AGG - Chr1:24339891-24339910 MsG0180001633.01.T01:CDS 50.0%
ATCAGGTAGCCCGCACATAT+CGG + Chr1:24340255-24340274 None:intergenic 50.0%
CAGAGACACAAAACAGACGG+CGG + Chr1:24340412-24340431 None:intergenic 50.0%
CAGGTAACACGTCTCAAGTG+TGG - Chr1:24341524-24341543 MsG0180001633.01.T01:intron 50.0%
CATACGATGAGCGATGCGAT+GGG - Chr1:24341575-24341594 MsG0180001633.01.T01:intron 50.0%
CCCGCAAGAAATTTCACCCA+AGG + Chr1:24341621-24341640 None:intergenic 50.0%
CGAAGTGCAGATAACTCGGT+TGG + Chr1:24341806-24341825 None:intergenic 50.0%
CGGTGGAAAACCGATATGTG+CGG - Chr1:24340242-24340261 MsG0180001633.01.T01:intron 50.0%
GACCGAAGAAAAAAGAGCGG+TGG + Chr1:24341784-24341803 None:intergenic 50.0%
GATTAAGGGAAGGTCCTGCT+AGG - Chr1:24339413-24339432 MsG0180001633.01.T01:CDS 50.0%
GCGGTGGACCATTTCATCTA+AGG + Chr1:24341768-24341787 None:intergenic 50.0%
GGTCCAATTCATGAGTGCCT+TGG - Chr1:24341601-24341620 MsG0180001633.01.T01:intron 50.0%
GGTGGAAAACCGATATGTGC+GGG - Chr1:24340243-24340262 MsG0180001633.01.T01:intron 50.0%
GGTTGGGGGAAAGCTGTATA+TGG - Chr1:24342226-24342245 MsG0180001633.01.T01:CDS 50.0%
GTAACACGTCTCAAGTGTGG+TGG - Chr1:24341527-24341546 MsG0180001633.01.T01:intron 50.0%
GTATATGGAGGACCAGCTAC+AGG - Chr1:24342241-24342260 MsG0180001633.01.T01:CDS 50.0%
TCTCGTGAGCTTAGCTCAGT+TGG + Chr1:24339756-24339775 None:intergenic 50.0%
TGCCATACCGGTGAGATTGA+AGG + Chr1:24341653-24341672 None:intergenic 50.0%
TGGGGGAAAGCTGTATATGG+AGG - Chr1:24342229-24342248 MsG0180001633.01.T01:CDS 50.0%
TTCAATCCCCCGTTGCCAAA+AGG - Chr1:24341968-24341987 MsG0180001633.01.T01:intron 50.0%
! CACCCAAGGCACTCATGAAT+TGG + Chr1:24341607-24341626 None:intergenic 50.0%
!! ATGGTGGATTGCACTGGAGA+AGG - Chr1:24339442-24339461 MsG0180001633.01.T01:CDS 50.0%
!! TGGCATCGATACGCAGATAC+AGG + Chr1:24340652-24340671 None:intergenic 50.0%
ACACCAACTCCTCCTGTAGC+TGG + Chr1:24342256-24342275 None:intergenic 55.0%
CCATACGATGAGCGATGCGA+TGG - Chr1:24341574-24341593 MsG0180001633.01.T01:intron 55.0%
CCATCGCATCGCTCATCGTA+TGG + Chr1:24341577-24341596 None:intergenic 55.0%
CGAACTTCCTCGTCCGTATC+TGG + Chr1:24341917-24341936 None:intergenic 55.0%
CGATTGTACGGCAACGCCAA+AGG + Chr1:24341886-24341905 None:intergenic 55.0%
GGGATACAAGGGATATGCGG+TGG - Chr1:24340225-24340244 MsG0180001633.01.T01:intron 55.0%
TATGGAGGACCAGCTACAGG+AGG - Chr1:24342244-24342263 MsG0180001633.01.T01:CDS 55.0%
TGCCAACTCAAGCCATGGAG+AGG - Chr1:24342353-24342372 MsG0180001633.01.T01:CDS 55.0%
! GATGAGCGATGCGATGGGTT+TGG - Chr1:24341580-24341599 MsG0180001633.01.T01:intron 55.0%
! GGGTCGACCACATTTTACCG+TGG - Chr1:24342147-24342166 MsG0180001633.01.T01:CDS 55.0%
!! GGAGGAGTTGGTGTTACACC+TGG - Chr1:24342262-24342281 MsG0180001633.01.T01:CDS 55.0%
GGACCAGCTACAGGAGGAGT+TGG - Chr1:24342250-24342269 MsG0180001633.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 24339172 24342495 24339172 ID=MsG0180001633.01;Name=MsG0180001633.01
Chr1 mRNA 24339172 24342495 24339172 ID=MsG0180001633.01.T01;Parent=MsG0180001633.01;Name=MsG0180001633.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.5|1|1|1|2|27|459
Chr1 exon 24339172 24340140 24339172 ID=MsG0180001633.01.T01:exon:40747;Parent=MsG0180001633.01.T01
Chr1 exon 24342058 24342495 24342058 ID=MsG0180001633.01.T01:exon:40746;Parent=MsG0180001633.01.T01
Chr1 CDS 24342058 24342495 24342058 ID=MsG0180001633.01.T01:cds;Parent=MsG0180001633.01.T01
Chr1 CDS 24339199 24340140 24339199 ID=MsG0180001633.01.T01:cds;Parent=MsG0180001633.01.T01
Chr1 three_prime_UTR 24339172 24339198 24339172 ID=MsG0180001633.01.T01:three_prime_utr;Parent=MsG0180001633.01.T01
Gene Sequence

>MsG0180001633.01.T01

ATGGCCCAATCTCTTTTATTCACAGTGAAGAGAAGTGCCCCTGAATTTGTAAGACCATCAAAACCAACACCTCATGAAATAAAATTACTCTCAGATATAGATGACCAAGAAGGGTTACGTTTTCAAATTCCAGTGATACAATTTTATAAATATGATCCAAATATGGAAGGGAAAGACCCTGTTGATGTTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGATTAAGGGAAGGTCCTGCTAGGAAACTTATGGTGGATTGCACTGGAGAAGGTGTTTTGTTCATTGAAGCTGATGCTGATGTTAGTTTGAAAGAATTTGGTGACGCTCTTCAACCTCCTTTTCCTTGTTTGGACGAGTTTCTTTTCGATGTTCCTGGTTATTCAGATGTGATTAACACTCCAATCCTTCTTATCCAGGTAACACGTCTCAAGTGTGGTGGTTTCATATTTGCTCTTCGTCTAAACCATACGATGAGCGATGCGATGGGTTTGGTCCAATTCATGAGTGCCTTGGGTGAAATTTCTTGCGGGATGAATGAACCTTCAATCTCACCGGTATGGCATAGAGAGCTTCTAAACGCAAGGGATCCACCAAGAGTAACATGCACTCATCGTGAATACGAGCAAGTTCCTGACACAAAAGGAACCATTATACCCTTAGATGAAATGGTCCACCGCTCTTTTTTCTTCGGTCCAACCGAGTTATCTGCACTTCGTTCTCTATTTCCACGTCACCTACAACAACAATCCAAATTCGAAATCATCACTGCATGCCTTTGGCGTTGCCGTACAATCGCATTACAACCAGATACGGACGAGGAAGTTCGCATAATTTGCTTATACAATGCACGTCGCAAGTTCAATCCCCCGTTGCCAAAAGGTTACTATGGAAACGCTTTTGCGTTTCCTGTTGCAATTACAACTGCAGGAAAACTAATTGAAAATCCATTAGGGTATGCACTTGAGTTAGTTAAAAAAGCTAAATCAGATGTCGCTCAAGAATACATGTATTCAGTTGCGGATTTAATGGTTATCAAGGGTCGACCACATTTTACCGTGGTGAGAATGTACTTAGTGTCTGATGTTACACATGCTGGACTTAGAGATGTTGATTTTGGTTGGGGGAAAGCTGTATATGGAGGACCAGCTACAGGAGGAGTTGGTGTTACACCTGGTGTTGCTAGCTTTTATATACCTTTCAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCACTTTGTTTGCCAACTCAAGCCATGGAGAGGTTCGTTAAAGAGTTAGATAGTTTGCTTAAGAGAAACATTAGCCAATCTACTAAAGATGATCCAAAATATGCTATCATTAATTCTTCGTTGTAG
Protein sequence

>MsG0180001633.01.T01

MAQSLLFTVKRSAPEFVRPSKPTPHEIKLLSDIDDQEGLRFQIPVIQFYKYDPNMEGKDPVDVIRKALAKTLVFYYPFAGRLREGPARKLMVDCTGEGVLFIEADADVSLKEFGDALQPPFPCLDEFLFDVPGYSDVINTPILLIQVTRLKCGGFIFALRLNHTMSDAMGLVQFMSALGEISCGMNEPSISPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDEMVHRSFFFGPTELSALRSLFPRHLQQQSKFEIITACLWRCRTIALQPDTDEEVRIICLYNARRKFNPPLPKGYYGNAFAFPVAITTAGKLIENPLGYALELVKKAKSDVAQEYMYSVADLMVIKGRPHFTVVRMYLVSDVTHAGLRDVDFGWGKAVYGGPATGGVGVTPGVASFYIPFKNAKGEEGLVIPLCLPTQAMERFVKELDSLLKRNISQSTKDDPKYAIINSSL*