AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002908.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002908.01.T01 MTR_1g052405 85.714 105 11 1 57 157 233 337 2.80e-59 187
MsG0180002908.01.T01 MTR_1g052380 72.897 107 22 3 58 157 100 206 5.54e-46 149
MsG0180002908.01.T01 MTR_3g085620 60.638 94 33 1 57 146 81 174 1.88e-34 119
MsG0180002908.01.T01 MTR_1g492730 46.875 96 45 2 58 147 209 304 6.55e-23 92.4
MsG0180002908.01.T01 MTR_4g014750 41.026 78 37 2 77 145 151 228 3.13e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002908.01.T01 AT3G57810 69.159 107 27 2 57 157 211 317 5.43e-46 152
MsG0180002908.01.T01 AT3G57810 69.159 107 27 2 57 157 211 317 5.43e-46 152
MsG0180002908.01.T01 AT3G57810 69.159 107 27 2 57 157 211 317 5.43e-46 152

Find 51 sgRNAs with CRISPR-Local

Find 637 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATTCTCTCCTTGAATTA+AGG 0.140121 1:-52781220 None:intergenic
TTGTTACATTGGAAAATAAA+AGG 0.248552 1:-52781191 None:intergenic
ATTCATATATTTCACGAATA+AGG 0.255352 1:+52780489 MsG0180002908.01.T01:CDS
CCATGGTACAGAACTCTAAT+TGG 0.261607 1:-52780970 None:intergenic
TAATTCTCTCCTTGAATTAA+GGG 0.349871 1:-52781219 None:intergenic
CTTTCTCTGTACTATTTCTC+AGG 0.365179 1:+52779612 MsG0180002908.01.T01:CDS
TACAGAGAAAGTTCAAGAAC+AGG 0.387782 1:-52779600 None:intergenic
TCCCTATGTTATTGTTTCCT+AGG 0.390202 1:+52781144 MsG0180002908.01.T01:three_prime_UTR
TGGTCATTATGATGCATTAG+AGG 0.391695 1:+52780996 MsG0180002908.01.T01:CDS
ATGTGAAGCAATGAACAATT+CGG 0.401281 1:-52780537 None:intergenic
GCTGATGAGTTTATTAAAGA+AGG 0.403876 1:+52779637 MsG0180002908.01.T01:CDS
AGAGTTCTGTACCATGGGTT+TGG 0.408095 1:+52780976 MsG0180002908.01.T01:CDS
TAAGGGGAAAATTGTTACAT+TGG 0.412459 1:-52781202 None:intergenic
TTGATATCAATAGCTGAGTA+TGG 0.415356 1:+52780925 MsG0180002908.01.T01:CDS
TCATACATGTATACAGTGAT+TGG 0.453163 1:-52780886 None:intergenic
GATATCAAGCCACCAGCCTT+CGG 0.457439 1:-52772110 None:intergenic
CTGATGAGTTTATTAAAGAA+GGG 0.458271 1:+52779638 MsG0180002908.01.T01:CDS
ATGATGTATTCCTCAGCTAA+AGG 0.463774 1:-52781267 None:intergenic
TGTGAAGCAATGAACAATTC+GGG 0.464400 1:-52780536 None:intergenic
CAATTAGAGTTCTGTACCAT+GGG 0.488021 1:+52780971 MsG0180002908.01.T01:CDS
GCTGAGTATGGCCAAGAATA+CGG 0.504310 1:+52780937 MsG0180002908.01.T01:CDS
AAGTATAGAGAATTCCGTTA+TGG 0.505129 1:+52781168 MsG0180002908.01.T01:three_prime_UTR
CACTGTATACATGTATGATC+GGG 0.508209 1:+52780891 MsG0180002908.01.T01:CDS
AATTCTCTCCTTGAATTAAG+GGG 0.510172 1:-52781218 None:intergenic
AAATGCTAGAGTCGTGACTT+AGG 0.524456 1:-52781036 None:intergenic
TCACTGTATACATGTATGAT+CGG 0.529463 1:+52780890 MsG0180002908.01.T01:CDS
TGGAAAATAAAAGGCCATAA+CGG 0.535136 1:-52781182 None:intergenic
GGAATTCTCTATACTTGCCT+AGG 0.540645 1:-52781161 None:intergenic
TGCCTAGGAAACAATAACAT+AGG 0.551063 1:-52781146 None:intergenic
GCCTAGGAAACAATAACATA+GGG 0.554009 1:-52781145 None:intergenic
ATCATACATGTATACAGCGA+TGG 0.555367 1:-52772087 None:intergenic
CCAATTAGAGTTCTGTACCA+TGG 0.557173 1:+52780970 MsG0180002908.01.T01:CDS
TACATGTATGATCGGGAAGC+TGG 0.561772 1:+52780898 MsG0180002908.01.T01:CDS
AATAAGGAAGCCTCATGTGT+GGG 0.572470 1:+52780505 MsG0180002908.01.T01:CDS
TGATGAGTATGTCAAAAGAA+AGG 0.572511 1:+52771540 MsG0180002908.01.T01:CDS
GGTTCGCCTCCCCACACATG+AGG 0.573463 1:-52780515 None:intergenic
TGTATTCCTCAGCTAAAGGC+CGG 0.576438 1:-52781263 None:intergenic
TCATACATGTATACAGCGAT+GGG 0.582510 1:-52772086 None:intergenic
TACATGTATGATCCGAAGGC+TGG 0.595413 1:+52772098 MsG0180002908.01.T01:CDS
TGTATACATGTATGATCCGA+AGG 0.607421 1:+52772094 MsG0180002908.01.T01:CDS
ATGTATGATCCGAAGGCTGG+TGG 0.615176 1:+52772101 MsG0180002908.01.T01:CDS
GAAAGGAACAGATGAAACAA+TGG 0.618723 1:+52771557 MsG0180002908.01.T01:CDS
ATGTATGATCGGGAAGCTGG+TGG 0.628891 1:+52780901 MsG0180002908.01.T01:CDS
GAATAAGGAAGCCTCATGTG+TGG 0.639078 1:+52780504 MsG0180002908.01.T01:CDS
ACAGAGAAAGTTCAAGAACA+GGG 0.639249 1:-52779599 None:intergenic
CATCATAATGACCAAACCCA+TGG 0.642715 1:-52780987 None:intergenic
AAAGAAGGGAGAAAACAGAA+TGG 0.645492 1:+52779652 MsG0180002908.01.T01:CDS
ACAAAGAATAATCAAGAACA+TGG 0.652492 1:-52771500 None:intergenic
AGGAAGCCTCATGTGTGGGG+AGG 0.655210 1:+52780509 MsG0180002908.01.T01:CDS
ATAAGGAAGCCTCATGTGTG+GGG 0.667700 1:+52780506 MsG0180002908.01.T01:CDS
GTATGGCCAAGAATACGGCA+AGG 0.698697 1:+52780942 MsG0180002908.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATTTATTTTAAA+CGG + Chr1:52777137-52777156 MsG0180002908.01.T01:intron 0.0%
!! TAATATGTTTATTATAGAAA+TGG + Chr1:52778278-52778297 MsG0180002908.01.T01:intron 10.0%
!!! AAAAAAAACATAAATCATTT+TGG - Chr1:52777122-52777141 None:intergenic 10.0%
!!! ATTTAATTTAATAAAAAACG+AGG - Chr1:52776929-52776948 None:intergenic 10.0%
!!! GAGATTATATATTTTAAAAA+TGG + Chr1:52774084-52774103 MsG0180002908.01.T01:intron 10.0%
!!! GTTTTTTTAATATAGAAAAA+TGG - Chr1:52777910-52777929 None:intergenic 10.0%
!!! TATTTTGTTGAATATAATTT+TGG + Chr1:52774243-52774262 MsG0180002908.01.T01:intron 10.0%
!!! TCACTAATTATATATTTTTT+GGG - Chr1:52777219-52777238 None:intergenic 10.0%
!!! TTCACTAATTATATATTTTT+TGG - Chr1:52777220-52777239 None:intergenic 10.0%
!!! TTTAATTTAATAAAAAACGA+GGG - Chr1:52776928-52776947 None:intergenic 10.0%
!!! TTTTATTTTACTTATAGAAT+TGG - Chr1:52776804-52776823 None:intergenic 10.0%
!!! TTTTTATTTATTCATATTGT+TGG + Chr1:52781099-52781118 MsG0180002908.01.T01:three_prime_UTR 10.0%
!! AAAATAAAAAAACATTCTTG+AGG + Chr1:52780185-52780204 MsG0180002908.01.T01:intron 15.0%
!! AAATAAAAAAGTTTGCATTT+AGG - Chr1:52774586-52774605 None:intergenic 15.0%
!! AAATTGGAAAATAGATTAAA+AGG - Chr1:52779746-52779765 None:intergenic 15.0%
!! AATCAAATTATTCACAAATA+AGG + Chr1:52771823-52771842 MsG0180002908.01.T01:intron 15.0%
!! ATATAATTAGTGAACTATTA+AGG + Chr1:52777226-52777245 MsG0180002908.01.T01:intron 15.0%
!! ATTGAAAGATTAATATGAAA+TGG - Chr1:52779533-52779552 None:intergenic 15.0%
!! CATTGTATAATTGTAAATAT+TGG - Chr1:52777040-52777059 None:intergenic 15.0%
!! TATATATACAACGAAAAAAA+AGG + Chr1:52775564-52775583 MsG0180002908.01.T01:intron 15.0%
!! TTGAAAGATTAATATGAAAT+GGG - Chr1:52779532-52779551 None:intergenic 15.0%
!! TTTAACATGCAAATAAAATA+AGG - Chr1:52779788-52779807 None:intergenic 15.0%
!!! AATTTTTATTTATTTGAAGG+AGG + Chr1:52774303-52774322 MsG0180002908.01.T01:intron 15.0%
!!! AGATTATTTGTTTTTTTTGA+AGG + Chr1:52776683-52776702 MsG0180002908.01.T01:intron 15.0%
!!! ATATAAAAAAACACCTTTTT+GGG - Chr1:52775541-52775560 None:intergenic 15.0%
!!! ATTTTCATCATTAAAGTAAA+TGG - Chr1:52771731-52771750 None:intergenic 15.0%
!!! ATTTTTATTTATTTGAAGGA+GGG + Chr1:52774304-52774323 MsG0180002908.01.T01:intron 15.0%
!!! GTCAATTTTTATTTATTTGA+AGG + Chr1:52774300-52774319 MsG0180002908.01.T01:intron 15.0%
!!! TATATAAAAAAACACCTTTT+TGG - Chr1:52775542-52775561 None:intergenic 15.0%
!!! TTTGATTTTATTTTTCTACT+AGG - Chr1:52773505-52773524 None:intergenic 15.0%
!!! TTTTAGCATCATAATAAAAA+TGG - Chr1:52774833-52774852 None:intergenic 15.0%
!!! TTTTATTTTCATAGAGAATA+AGG + Chr1:52774608-52774627 MsG0180002908.01.T01:intron 15.0%
!! AAAAGACCAAATTAAAAAAC+AGG - Chr1:52777081-52777100 None:intergenic 20.0%
!! AAAATAAAGTAAACAAGTGA+AGG + Chr1:52773805-52773824 MsG0180002908.01.T01:intron 20.0%
!! AAATTCTAACTACTTGAATT+GGG - Chr1:52776415-52776434 None:intergenic 20.0%
!! AAGTTATATTATATTGTGTG+AGG - Chr1:52776848-52776867 None:intergenic 20.0%
!! AATAAAGAGTTCTCTATAAT+GGG + Chr1:52772172-52772191 MsG0180002908.01.T01:intron 20.0%
!! AATATAGATGACAAGAAAAA+AGG - Chr1:52774016-52774035 None:intergenic 20.0%
!! ACATTTATAATGTCATGTAT+AGG + Chr1:52772535-52772554 MsG0180002908.01.T01:intron 20.0%
!! ACCAGAGTATATTTATTATA+TGG + Chr1:52775028-52775047 MsG0180002908.01.T01:intron 20.0%
!! ACCATATAATAAATATACTC+TGG - Chr1:52775032-52775051 None:intergenic 20.0%
!! ACTAACTTAAAATGACTATA+GGG - Chr1:52779857-52779876 None:intergenic 20.0%
!! AGAAAAATATATTGAGAATG+AGG + Chr1:52773253-52773272 MsG0180002908.01.T01:intron 20.0%
!! AGGTATAATATATATGCATT+TGG + Chr1:52780830-52780849 MsG0180002908.01.T01:intron 20.0%
!! ATATATATGGTATTTCAAAG+GGG + Chr1:52772370-52772389 MsG0180002908.01.T01:intron 20.0%
!! ATGCATATATATTATACCTT+AGG - Chr1:52780829-52780848 None:intergenic 20.0%
!! ATGTTTATTATAGAAATGGT+TGG + Chr1:52778282-52778301 MsG0180002908.01.T01:intron 20.0%
!! ATTCATATATTTCACGAATA+AGG + Chr1:52780489-52780508 MsG0180002908.01.T01:CDS 20.0%
!! ATTGACAATTACTTGTAATT+TGG - Chr1:52776006-52776025 None:intergenic 20.0%
!! ATTTACTATATCTTGACATT+AGG + Chr1:52773120-52773139 MsG0180002908.01.T01:intron 20.0%
!! GATATATATGGTATTTCAAA+GGG + Chr1:52772369-52772388 MsG0180002908.01.T01:intron 20.0%
!! TACTTAATAGTGTAAGTAAA+TGG + Chr1:52777803-52777822 MsG0180002908.01.T01:intron 20.0%
!! TGTCATTAATGTAATGTAAT+AGG - Chr1:52771615-52771634 None:intergenic 20.0%
!! TTCATTAGATATGTGTTAAA+TGG + Chr1:52777773-52777792 MsG0180002908.01.T01:intron 20.0%
!! TTGTTACATTGGAAAATAAA+AGG - Chr1:52781194-52781213 None:intergenic 20.0%
!! TTTAAATCTCTAGTTACAAT+TGG - Chr1:52780168-52780187 None:intergenic 20.0%
!! TTTACAACTATAAACAATGT+GGG + Chr1:52773886-52773905 MsG0180002908.01.T01:intron 20.0%
!! TTTACTATATCTTGACATTA+GGG + Chr1:52773121-52773140 MsG0180002908.01.T01:intron 20.0%
!! TTTATACTTGTCTGATTTAT+GGG + Chr1:52775364-52775383 MsG0180002908.01.T01:intron 20.0%
!!! AAAGATCCTGTTTTTTAATT+TGG + Chr1:52777072-52777091 MsG0180002908.01.T01:intron 20.0%
!!! AAGTGACATTTTAAGTATAA+GGG + Chr1:52775335-52775354 MsG0180002908.01.T01:intron 20.0%
!!! AGTATAAATTAAAGTGTTTC+TGG + Chr1:52773685-52773704 MsG0180002908.01.T01:intron 20.0%
!!! ATCATTCCTTTTGAAAATTA+AGG - Chr1:52772945-52772964 None:intergenic 20.0%
!!! CAATGTTTTAAAAATCAAAC+AGG + Chr1:52778951-52778970 MsG0180002908.01.T01:intron 20.0%
!!! CTTCTTGTTTATAAAACTTA+CGG + Chr1:52779207-52779226 MsG0180002908.01.T01:intron 20.0%
!!! CTTGTTTTGTATTTTGTTTA+GGG - Chr1:52774335-52774354 None:intergenic 20.0%
!!! GTTTCTTTGTTTACTATAAA+AGG + Chr1:52780388-52780407 MsG0180002908.01.T01:intron 20.0%
!!! TAAGTGACATTTTAAGTATA+AGG + Chr1:52775334-52775353 MsG0180002908.01.T01:intron 20.0%
!!! TAGTATTGAAAGTTATTGTT+TGG - Chr1:52772726-52772745 None:intergenic 20.0%
!!! TATTATATGGTTCAAGTTTT+GGG + Chr1:52775041-52775060 MsG0180002908.01.T01:intron 20.0%
!!! TATTCTTTGTTTTATTTGTC+AGG + Chr1:52771513-52771532 MsG0180002908.01.T01:CDS 20.0%
!!! TCAATCATTCAAATGTTTTT+GGG - Chr1:52771692-52771711 None:intergenic 20.0%
!!! TCACTTGTTTACTTTATTTT+TGG - Chr1:52773805-52773824 None:intergenic 20.0%
!!! TCACTTTATTTTCAACAATT+CGG + Chr1:52780785-52780804 MsG0180002908.01.T01:intron 20.0%
!!! TCTTGTTTTGTATTTTGTTT+AGG - Chr1:52774336-52774355 None:intergenic 20.0%
!!! TGATATTTGAACAACTATTT+TGG - Chr1:52776288-52776307 None:intergenic 20.0%
!!! TGTTGATAAATGTCAAATTT+AGG - Chr1:52775478-52775497 None:intergenic 20.0%
!!! TTATTATATGGTTCAAGTTT+TGG + Chr1:52775040-52775059 MsG0180002908.01.T01:intron 20.0%
!!! TTATTTTCTTCAAATTCTAG+AGG + Chr1:52776990-52777009 MsG0180002908.01.T01:intron 20.0%
!!! TTATTTTGAAAAACCTTTTG+AGG - Chr1:52775643-52775662 None:intergenic 20.0%
!!! TTGTTGTTTTCTATTTTTGT+TGG - Chr1:52776246-52776265 None:intergenic 20.0%
!!! TTTAGAACTATACTATACAA+GGG + Chr1:52778096-52778115 MsG0180002908.01.T01:intron 20.0%
!!! TTTCTATGTAGTTTTTTTCA+TGG - Chr1:52779430-52779449 None:intergenic 20.0%
!!! TTTTAGAACTATACTATACA+AGG + Chr1:52778095-52778114 MsG0180002908.01.T01:intron 20.0%
! AAAAATATGAAGTGGGTAAA+GGG - Chr1:52779967-52779986 None:intergenic 25.0%
! AAAACAGAATAATTGAAAGC+AGG + Chr1:52779455-52779474 MsG0180002908.01.T01:intron 25.0%
! AAACAGAATAATTGAAAGCA+GGG + Chr1:52779456-52779475 MsG0180002908.01.T01:intron 25.0%
! AAATGACTATAGGGAATATT+TGG - Chr1:52779848-52779867 None:intergenic 25.0%
! AATATGCATGCAATTACAAA+AGG - Chr1:52774187-52774206 None:intergenic 25.0%
! AATCAAAAGTGAAAATGATG+TGG - Chr1:52780259-52780278 None:intergenic 25.0%
! AATTCTCCAAAAATATGAAG+TGG - Chr1:52779975-52779994 None:intergenic 25.0%
! ACAAGTAATTGTCAATTATG+CGG + Chr1:52776010-52776029 MsG0180002908.01.T01:intron 25.0%
! ATAAATACTGTTGTTGTGAA+TGG + Chr1:52778384-52778403 MsG0180002908.01.T01:intron 25.0%
! ATTCTCCAAAAATATGAAGT+GGG - Chr1:52779974-52779993 None:intergenic 25.0%
! CAAAAACATTTGAATGATTG+AGG + Chr1:52771691-52771710 MsG0180002908.01.T01:intron 25.0%
! CAAATTCTAACTACTTGAAT+TGG - Chr1:52776416-52776435 None:intergenic 25.0%
! CAATAAAGAGTTCTCTATAA+TGG + Chr1:52772171-52772190 MsG0180002908.01.T01:intron 25.0%
! CACATTGTTTATAGTTGTAA+AGG - Chr1:52773887-52773906 None:intergenic 25.0%
! CATGCATATTTATTTGACAA+AGG + Chr1:52774197-52774216 MsG0180002908.01.T01:intron 25.0%
! CATTATAGAGAACTCTTTAT+TGG - Chr1:52772173-52772192 None:intergenic 25.0%
! CTGATGAGTTTATTAAAGAA+GGG + Chr1:52779638-52779657 MsG0180002908.01.T01:CDS 25.0%
! CTTTACAACTATAAACAATG+TGG + Chr1:52773885-52773904 MsG0180002908.01.T01:intron 25.0%
! CTTTATACTTGTCTGATTTA+TGG + Chr1:52775363-52775382 MsG0180002908.01.T01:intron 25.0%
! GAAATTGGTAAAAAAAGAAG+TGG - Chr1:52772762-52772781 None:intergenic 25.0%
! GACTAACTTAAAATGACTAT+AGG - Chr1:52779858-52779877 None:intergenic 25.0%
! GGAATTTGTGAAATATTACT+TGG - Chr1:52775818-52775837 None:intergenic 25.0%
! GGATATATATGGTATTTCAA+AGG + Chr1:52772368-52772387 MsG0180002908.01.T01:intron 25.0%
! GTCTATAAATGCTTTATGAA+GGG - Chr1:52771670-52771689 None:intergenic 25.0%
! GTTAACATAGATAATAACCT+AGG + Chr1:52779168-52779187 MsG0180002908.01.T01:intron 25.0%
! TAATTCTCTCCTTGAATTAA+GGG - Chr1:52781222-52781241 None:intergenic 25.0%
! TATACAAGAGTAAACTATTC+TGG + Chr1:52780298-52780317 MsG0180002908.01.T01:intron 25.0%
! TATAGAAAAATGGGAAAAAG+AGG - Chr1:52777900-52777919 None:intergenic 25.0%
! TATATATGGTATTTCAAAGG+GGG + Chr1:52772371-52772390 MsG0180002908.01.T01:intron 25.0%
! TCATTAAAGTAAATGGTGAT+TGG - Chr1:52771724-52771743 None:intergenic 25.0%
! TGAAAATAAGTAGATGTAAG+TGG - Chr1:52779892-52779911 None:intergenic 25.0%
! TGATGCATATTCATATTCAA+AGG + Chr1:52775672-52775691 MsG0180002908.01.T01:intron 25.0%
! TGTATTCTCACTATAAAAAC+CGG + Chr1:52781244-52781263 MsG0180002908.01.T01:three_prime_UTR 25.0%
! TGTTGTTACATGATGTATTT+GGG - Chr1:52774380-52774399 None:intergenic 25.0%
! TGTTTATAGTTGTAAAGGAA+AGG - Chr1:52773882-52773901 None:intergenic 25.0%
! TTAAATTAAATTGTAGCCAG+AGG + Chr1:52776938-52776957 MsG0180002908.01.T01:intron 25.0%
! TTAATTCTCTCCTTGAATTA+AGG - Chr1:52781223-52781242 None:intergenic 25.0%
! TTATACTTGTCTGATTTATG+GGG + Chr1:52775365-52775384 MsG0180002908.01.T01:intron 25.0%
! TTATCATGATATACATCTTC+AGG + Chr1:52771781-52771800 MsG0180002908.01.T01:intron 25.0%
! TTCAGAAATCGAAAAATTAG+AGG - Chr1:52774271-52774290 None:intergenic 25.0%
! TTGATATCAAAATCTGAGTA+TGG + Chr1:52772125-52772144 MsG0180002908.01.T01:intron 25.0%
! TTGATTGAACACAATTGAAA+GGG - Chr1:52776889-52776908 None:intergenic 25.0%
! TTTATTGAAGATTGACTAAC+AGG - Chr1:52778369-52778388 None:intergenic 25.0%
!! AATATACTCTGGTTTAAGTT+AGG - Chr1:52775021-52775040 None:intergenic 25.0%
!! ACATCTCCTTAATTTTCAAA+AGG + Chr1:52772936-52772955 MsG0180002908.01.T01:intron 25.0%
!! ATAAATCATTTTGGATGAAC+AGG - Chr1:52777113-52777132 None:intergenic 25.0%
!! CTCAATCATTCAAATGTTTT+TGG - Chr1:52771693-52771712 None:intergenic 25.0%
!! GGTAGATTAGATATTTTCTT+TGG - Chr1:52773619-52773638 None:intergenic 25.0%
!! TAGCCAAAACTTTTTATCTA+GGG + Chr1:52772903-52772922 MsG0180002908.01.T01:intron 25.0%
!! TATGCCTTTTAGATGTATAA+AGG + Chr1:52773299-52773318 MsG0180002908.01.T01:intron 25.0%
!! TGGAAAAACCTACTAATTTT+TGG - Chr1:52774965-52774984 None:intergenic 25.0%
!! TTAGCCAAAACTTTTTATCT+AGG + Chr1:52772902-52772921 MsG0180002908.01.T01:intron 25.0%
!! TTGTTGTTACATGATGTATT+TGG - Chr1:52774381-52774400 None:intergenic 25.0%
!! TTTATAGTTCTGTAGTATCT+CGG + Chr1:52778621-52778640 MsG0180002908.01.T01:intron 25.0%
!!! AAAACCTACTAATTTTTGGT+TGG - Chr1:52774961-52774980 None:intergenic 25.0%
!!! AAACATTGCTTTTAGCATAA+TGG - Chr1:52778939-52778958 None:intergenic 25.0%
!!! AAACCTACTAATTTTTGGTT+GGG - Chr1:52774960-52774979 None:intergenic 25.0%
!!! AAATTTACTTTTTGCTTGTG+AGG - Chr1:52775885-52775904 None:intergenic 25.0%
!!! AACATTGCTTTTAGCATAAT+GGG - Chr1:52778938-52778957 None:intergenic 25.0%
!!! ACAATTTTTTGCTAAGAACA+TGG + Chr1:52771756-52771775 MsG0180002908.01.T01:intron 25.0%
!!! CTTACATCTACTTATTTTCA+AGG + Chr1:52779892-52779911 MsG0180002908.01.T01:intron 25.0%
!!! GTAGAAACAAGTTTTAAGTT+AGG - Chr1:52775505-52775524 None:intergenic 25.0%
!!! TGAGCCAATGTTTTTAAAAT+CGG - Chr1:52779084-52779103 None:intergenic 25.0%
!!! TTTGGAAGCATTTTTTGTTT+AGG - Chr1:52778704-52778723 None:intergenic 25.0%
AAAATATGAAGTGGGTAAAG+GGG - Chr1:52779966-52779985 None:intergenic 30.0%
AAAATGCAATCTTATGGTCA+AGG + Chr1:52772575-52772594 MsG0180002908.01.T01:intron 30.0%
AAAGTTTGCATTTAGGTAAG+TGG - Chr1:52774579-52774598 None:intergenic 30.0%
AAATGCAATCTTATGGTCAA+GGG + Chr1:52772576-52772595 MsG0180002908.01.T01:intron 30.0%
AAATTCACCTTTCTTTATGC+AGG + Chr1:52780597-52780616 MsG0180002908.01.T01:intron 30.0%
AAATTCAGTTATGCGTCATT+AGG + Chr1:52777543-52777562 MsG0180002908.01.T01:intron 30.0%
AACTCAAATAAACCAGCATA+AGG - Chr1:52771944-52771963 None:intergenic 30.0%
AAGTATAGAGAATTCCGTTA+TGG + Chr1:52781168-52781187 MsG0180002908.01.T01:three_prime_UTR 30.0%
AATAAAATAAGGCCTTCTTC+TGG - Chr1:52779777-52779796 None:intergenic 30.0%
AATAAGTAGATGTAAGTGGT+TGG - Chr1:52779888-52779907 None:intergenic 30.0%
AATAATGTTCTCGAACTCTA+AGG - Chr1:52776047-52776066 None:intergenic 30.0%
AATGATATATGATAGTCCTG+TGG - Chr1:52773103-52773122 None:intergenic 30.0%
AATGTATGTCTAACTTGATC+AGG - Chr1:52775919-52775938 None:intergenic 30.0%
AATTATGCTCTTTACCCAAA+TGG - Chr1:52776660-52776679 None:intergenic 30.0%
AATTCTCTCCTTGAATTAAG+GGG - Chr1:52781221-52781240 None:intergenic 30.0%
ACAAACAAAGTTCTTAGTTG+AGG - Chr1:52775620-52775639 None:intergenic 30.0%
AGAAGATGAATAACCCATAA+CGG + Chr1:52774513-52774532 MsG0180002908.01.T01:intron 30.0%
AGAGAATAAGGAGAATACAA+AGG + Chr1:52774620-52774639 MsG0180002908.01.T01:intron 30.0%
AGTAGCTAGAAATTTCTTAG+AGG + Chr1:52776710-52776729 MsG0180002908.01.T01:intron 30.0%
ATAGTGTAAGTAAATGGTGA+AGG + Chr1:52777809-52777828 MsG0180002908.01.T01:intron 30.0%
ATATACTTCGAATCTGATTC+AGG + Chr1:52778319-52778338 MsG0180002908.01.T01:intron 30.0%
ATATATGGTATTTCAAAGGG+GGG + Chr1:52772372-52772391 MsG0180002908.01.T01:intron 30.0%
ATGTGAAGCAATGAACAATT+CGG - Chr1:52780540-52780559 None:intergenic 30.0%
ATTAGAGGTTCCTAAAAAGA+AGG + Chr1:52781011-52781030 MsG0180002908.01.T01:CDS 30.0%
ATTGAATATCTGTAGCATTC+TGG + Chr1:52779686-52779705 MsG0180002908.01.T01:intron 30.0%
CAAAAATATGAAGTGGGTAA+AGG - Chr1:52779968-52779987 None:intergenic 30.0%
CAAATATTCACAATCTTCCT+AGG + Chr1:52775760-52775779 MsG0180002908.01.T01:intron 30.0%
CAAGTAATTGTCAATTATGC+GGG + Chr1:52776011-52776030 MsG0180002908.01.T01:intron 30.0%
CATTCAGAGACAAATTATGT+TGG + Chr1:52778495-52778514 MsG0180002908.01.T01:intron 30.0%
CATTTCTTTGCAGTTTAGTT+CGG - Chr1:52780664-52780683 None:intergenic 30.0%
CTATAATCCAAAAAATGACC+AGG - Chr1:52778003-52778022 None:intergenic 30.0%
GAAAAATAAGGTTCTTGGTT+GGG - Chr1:52775135-52775154 None:intergenic 30.0%
GAGGATACTAGAAAATTGAT+TGG + Chr1:52773954-52773973 MsG0180002908.01.T01:intron 30.0%
GCAAATTATGGAATGAGAAT+AGG + Chr1:52778831-52778850 MsG0180002908.01.T01:intron 30.0%
GCTAAAACAATTGTGCAAAT+AGG + Chr1:52774846-52774865 MsG0180002908.01.T01:intron 30.0%
GCTGATGAGTTTATTAAAGA+AGG + Chr1:52779637-52779656 MsG0180002908.01.T01:CDS 30.0%
GGCATAAAACTCATATCATT+TGG - Chr1:52778150-52778169 None:intergenic 30.0%
GGCTAAAAATTATATGAACG+AGG + Chr1:52772015-52772034 MsG0180002908.01.T01:intron 30.0%
GGTCTATAAATGCTTTATGA+AGG - Chr1:52771671-52771690 None:intergenic 30.0%
GTCTATAATTGAAGGCAAAT+AGG + Chr1:52775299-52775318 MsG0180002908.01.T01:intron 30.0%
GTTCAAAGGTTGTATCAAAA+TGG - Chr1:52776155-52776174 None:intergenic 30.0%
GTTGATTGAACACAATTGAA+AGG - Chr1:52776890-52776909 None:intergenic 30.0%
GTTGTTACATGATGTATTTG+GGG - Chr1:52774379-52774398 None:intergenic 30.0%
GTTTACTCTTGTATAAGTAG+AGG - Chr1:52780293-52780312 None:intergenic 30.0%
TAACCCAACCAAAAATTAGT+AGG + Chr1:52774954-52774973 MsG0180002908.01.T01:intron 30.0%
TAAGAGAGAAAGTTGTTCAA+AGG - Chr1:52776169-52776188 None:intergenic 30.0%
TAAGGGGAAAATTGTTACAT+TGG - Chr1:52781205-52781224 None:intergenic 30.0%
TAGTGTAAGTAAATGGTGAA+GGG + Chr1:52777810-52777829 MsG0180002908.01.T01:intron 30.0%
TATTTGTAAGCATCAAGCAT+GGG + Chr1:52775949-52775968 MsG0180002908.01.T01:intron 30.0%
TCAAGAACGTCTATAATTGA+AGG + Chr1:52775291-52775310 MsG0180002908.01.T01:intron 30.0%
TCACTGTATACATGTATGAT+CGG + Chr1:52780890-52780909 MsG0180002908.01.T01:CDS 30.0%
TCATACATGTATACAGTGAT+TGG - Chr1:52780889-52780908 None:intergenic 30.0%
TCATGAACATGACTAGAATA+AGG + Chr1:52778174-52778193 MsG0180002908.01.T01:intron 30.0%
TCCAAAGTTAAGTCTAATGT+GGG + Chr1:52778718-52778737 MsG0180002908.01.T01:intron 30.0%
TGATGAGTATGTCAAAAGAA+AGG + Chr1:52771540-52771559 MsG0180002908.01.T01:CDS 30.0%
TGATTGAACACAATTGAAAG+GGG - Chr1:52776888-52776907 None:intergenic 30.0%
TGGAAAATAAAAGGCCATAA+CGG - Chr1:52781185-52781204 None:intergenic 30.0%
TGGGATTAACCTAGAAAATT+CGG + Chr1:52774437-52774456 MsG0180002908.01.T01:intron 30.0%
TTAGAGGTTCCTAAAAAGAA+GGG + Chr1:52781012-52781031 MsG0180002908.01.T01:CDS 30.0%
TTATACCTTAGGATTGTTCA+TGG - Chr1:52780818-52780837 None:intergenic 30.0%
TTATTTGTAAGCATCAAGCA+TGG + Chr1:52775948-52775967 MsG0180002908.01.T01:intron 30.0%
TTCAATTGTGTTCAATCAAC+AGG + Chr1:52776890-52776909 MsG0180002908.01.T01:intron 30.0%
TTCATGAAAAAGCTGTTGTT+TGG - Chr1:52780008-52780027 None:intergenic 30.0%
TTCCAAAGTTAAGTCTAATG+TGG + Chr1:52778717-52778736 MsG0180002908.01.T01:intron 30.0%
TTCGACATTTATATTCACTG+CGG + Chr1:52779494-52779513 MsG0180002908.01.T01:intron 30.0%
TTCTTTGCTCATCTTTCTTA+AGG + Chr1:52772690-52772709 MsG0180002908.01.T01:intron 30.0%
TTGATATCAATAGCTGAGTA+TGG + Chr1:52780925-52780944 MsG0180002908.01.T01:CDS 30.0%
TTGTCATCTACTAATGTCTT+AGG + Chr1:52774142-52774161 MsG0180002908.01.T01:intron 30.0%
TTTAATAAAAAACGAGGGAG+AGG - Chr1:52776923-52776942 None:intergenic 30.0%
! AACATCCTAATTTGTAACTC+TGG - Chr1:52774717-52774736 None:intergenic 30.0%
! ACAATTTTCCCCTTAATTCA+AGG + Chr1:52781210-52781229 MsG0180002908.01.T01:three_prime_UTR 30.0%
! AGATACACTTTTCTTTCTAC+TGG + Chr1:52772840-52772859 MsG0180002908.01.T01:intron 30.0%
! AGCCAAAACTTTTTATCTAG+GGG + Chr1:52772904-52772923 MsG0180002908.01.T01:intron 30.0%
! AGTGCATCAGCATATTTTAT+TGG - Chr1:52772800-52772819 None:intergenic 30.0%
! ATTTAGGTAAGTGGTGTTTT+GGG - Chr1:52774570-52774589 None:intergenic 30.0%
! CAAACAGTTTCTTTGAGTTT+AGG + Chr1:52780687-52780706 MsG0180002908.01.T01:intron 30.0%
! CATGTTTTCTACTTCTACTT+GGG - Chr1:52772995-52773014 None:intergenic 30.0%
! CTTTACCCACTTCATATTTT+TGG + Chr1:52779966-52779985 MsG0180002908.01.T01:intron 30.0%
! GATTTTCTTATGACATCTTC+AGG + Chr1:52780447-52780466 MsG0180002908.01.T01:intron 30.0%
! GCATTTTATGTCTTTGAACT+TGG + Chr1:52774763-52774782 MsG0180002908.01.T01:intron 30.0%
! GCTTATATTTAGAGCATGTT+TGG + Chr1:52772666-52772685 MsG0180002908.01.T01:intron 30.0%
! TACATCTTCAGGTTTATTGA+AGG + Chr1:52771792-52771811 MsG0180002908.01.T01:intron 30.0%
! TAGCATCTATTGTATTGATC+TGG + Chr1:52778020-52778039 MsG0180002908.01.T01:intron 30.0%
! TCATGAAAAAGCTGTTGTTT+GGG - Chr1:52780007-52780026 None:intergenic 30.0%
! TCTTCTGGAGAAAAACAAAT+TGG - Chr1:52779762-52779781 None:intergenic 30.0%
! TTGACCATAAGATTGCATTT+TGG - Chr1:52772576-52772595 None:intergenic 30.0%
!! AATGCTAAAAGTATCGAATG+CGG - Chr1:52771590-52771609 None:intergenic 30.0%
!! ATTCATTTGAGCTTTAGAAG+TGG + Chr1:52772347-52772366 MsG0180002908.01.T01:intron 30.0%
!! ATTTGTTTTTCTCCAGAAGA+AGG + Chr1:52779762-52779781 MsG0180002908.01.T01:intron 30.0%
!! CACATTTGGATGTTGATTTA+GGG + Chr1:52772044-52772063 MsG0180002908.01.T01:intron 30.0%
!! CAGTCCGATTTTAAAAACAT+TGG + Chr1:52779077-52779096 MsG0180002908.01.T01:intron 30.0%
!! GCATTTTGGTCATTTACTTT+GGG - Chr1:52776642-52776623 None:intergenic 30.0%
!! GCTTTAGAAGTGGATATATA+TGG + Chr1:52772357-52772376 MsG0180002908.01.T01:intron 30.0%
!! TATTTTAAACGGGTGCAATT+TGG + Chr1:52777148-52777167 MsG0180002908.01.T01:intron 30.0%
!!! AATTTTTGGTTGGGTTATGA+GGG - Chr1:52774951-52774970 None:intergenic 30.0%
!!! AGTATCCTCTTTTAAAGTGT+TGG - Chr1:52773943-52773962 None:intergenic 30.0%
!!! CATCAGTTGGCTTTATTTTT+GGG + Chr1:52778766-52778785 MsG0180002908.01.T01:intron 30.0%
!!! TAATTTTTGGTTGGGTTATG+AGG - Chr1:52774952-52774971 None:intergenic 30.0%
!!! TATTTTTGGACAAGTCTTGT+AGG - Chr1:52773791-52773810 None:intergenic 30.0%
!!! TTTTTAAAATCGGACTGAAC+CGG - Chr1:52779074-52779093 None:intergenic 30.0%
AAAGAAGGGAGAAAACAGAA+TGG + Chr1:52779652-52779671 MsG0180002908.01.T01:CDS 35.0%
AAAGTAAATGGTGATTGGCA+TGG - Chr1:52771719-52771738 None:intergenic 35.0%
AAATTCTACGATGGATGTAC+TGG + Chr1:52773175-52773194 MsG0180002908.01.T01:intron 35.0%
AACAATAAAGAACAACCCAG+AGG + Chr1:52774396-52774415 MsG0180002908.01.T01:intron 35.0%
AAGCACAAATCACAAGCTTA+GGG + Chr1:52773345-52773364 MsG0180002908.01.T01:intron 35.0%
AATGAGGATTCATGTTTGAG+TGG + Chr1:52773269-52773288 MsG0180002908.01.T01:intron 35.0%
ACAAACCATGAACAATCCTA+AGG + Chr1:52780810-52780829 MsG0180002908.01.T01:intron 35.0%
ACAGAGAAAGTTCAAGAACA+GGG - Chr1:52779602-52779621 None:intergenic 35.0%
ACATCACAATATGTCAGCTT+AGG + Chr1:52780339-52780358 MsG0180002908.01.T01:intron 35.0%
ACATGCCAGAGTTACAAATT+AGG + Chr1:52774709-52774728 MsG0180002908.01.T01:intron 35.0%
ACATGGGAAGAAAGTTTACA+CGG + Chr1:52778889-52778908 MsG0180002908.01.T01:intron 35.0%
ACCATCCTGTTCAACAATTA+TGG + Chr1:52778535-52778554 MsG0180002908.01.T01:intron 35.0%
ACGTCATATTACTGTGTACA+TGG - Chr1:52773477-52773496 None:intergenic 35.0%
AGGCTTGTATGTCTATAAGA+AGG + Chr1:52780359-52780378 MsG0180002908.01.T01:intron 35.0%
AGTAAGTATTTCTCTCTTCC+TGG + Chr1:52771902-52771921 MsG0180002908.01.T01:intron 35.0%
AGTAGAAGTAGAAAACATGG+CGG + Chr1:52772996-52773015 MsG0180002908.01.T01:intron 35.0%
ATACAAAACAAGAGCTCTAC+TGG + Chr1:52774343-52774362 MsG0180002908.01.T01:intron 35.0%
ATCATACATGTATACAGCGA+TGG - Chr1:52772090-52772109 None:intergenic 35.0%
ATCATGCTTCTCTAAGCAAA+GGG + Chr1:52778586-52778605 MsG0180002908.01.T01:intron 35.0%
ATCTTTCTTAAGGAGAAGCT+AGG + Chr1:52772700-52772719 MsG0180002908.01.T01:intron 35.0%
ATGATGTATTCCTCAGCTAA+AGG - Chr1:52781270-52781289 None:intergenic 35.0%
ATGCTTCACAAATTCTACGA+TGG + Chr1:52773166-52773185 MsG0180002908.01.T01:intron 35.0%
ATGTACAAGCATCACTTTGT+TGG + Chr1:52773738-52773757 MsG0180002908.01.T01:intron 35.0%
ATGTACACAGTAATATGACG+TGG + Chr1:52773476-52773495 MsG0180002908.01.T01:intron 35.0%
ATGTGAAGCAACGAACAATT+CGG - Chr1:52771875-52771894 None:intergenic 35.0%
ATGTGAAGGGAAGAAGATAA+TGG + Chr1:52777852-52777871 MsG0180002908.01.T01:intron 35.0%
ATTATGGGCCAAACAATAAG+AGG + Chr1:52778551-52778570 MsG0180002908.01.T01:intron 35.0%
ATTGTCAATTATGCGGGAAA+TGG + Chr1:52776017-52776036 MsG0180002908.01.T01:intron 35.0%
CAAATAAACCAGCATAAGGA+AGG - Chr1:52771940-52771959 None:intergenic 35.0%
CAAATGTTAAAGTCGCACAT+GGG + Chr1:52778873-52778892 MsG0180002908.01.T01:intron 35.0%
CAAATTCCAAGTCAATAGCA+TGG + Chr1:52775830-52775849 MsG0180002908.01.T01:intron 35.0%
CAATTAGAGTTCTGTACCAT+GGG + Chr1:52780971-52780990 MsG0180002908.01.T01:CDS 35.0%
CACTGTATACATGTATGATC+GGG + Chr1:52780891-52780910 MsG0180002908.01.T01:CDS 35.0%
CATAGAAAAGCGATGGAAAT+TGG - Chr1:52772777-52772796 None:intergenic 35.0%
CATTTATTACACTGTTGAGC+TGG - Chr1:52774990-52775009 None:intergenic 35.0%
CCAAGTAGAAGTAGAAAACA+TGG + Chr1:52772993-52773012 MsG0180002908.01.T01:intron 35.0%
CCACATACAAACTTATCTAC+TGG - Chr1:52778246-52778265 None:intergenic 35.0%
CCAGTAGATAAGTTTGTATG+TGG + Chr1:52778243-52778262 MsG0180002908.01.T01:intron 35.0%
CCATCCTGTTCAACAATTAT+GGG + Chr1:52778536-52778555 MsG0180002908.01.T01:intron 35.0%
CGAAAAATAAGGTTCTTGGT+TGG - Chr1:52775136-52775155 None:intergenic 35.0%
CGTCATATTACTGTGTACAT+GGG - Chr1:52773476-52773495 None:intergenic 35.0%
CTAACGACATCATATGGTAT+AGG - Chr1:52773422-52773441 None:intergenic 35.0%
CTACTTGAATTGGGTATGTA+TGG - Chr1:52776406-52776425 None:intergenic 35.0%
GAAAGGAACAGATGAAACAA+TGG + Chr1:52771557-52771576 MsG0180002908.01.T01:CDS 35.0%
GACACATAGAAGAACTTAGA+TGG + Chr1:52777655-52777674 MsG0180002908.01.T01:intron 35.0%
GACACCAAAATGCAATCTTA+TGG + Chr1:52772569-52772588 MsG0180002908.01.T01:intron 35.0%
GCAAATGCATATAAATGCCT+AGG - Chr1:52779188-52779207 None:intergenic 35.0%
GCCTAGGAAACAATAACATA+GGG - Chr1:52781148-52781167 None:intergenic 35.0%
GCCTCCTTTATACATCTAAA+AGG - Chr1:52773306-52773325 None:intergenic 35.0%
GGAAATGAGCAAATCCATTT+GGG + Chr1:52776643-52776662 MsG0180002908.01.T01:intron 35.0%
GGGATCTGTATTCAAACTAT+AGG - Chr1:52780720-52780739 None:intergenic 35.0%
GTAAATTACCTTCCTTATGC+TGG + Chr1:52771929-52771948 MsG0180002908.01.T01:intron 35.0%
GTACAATGTGGTGAAAAGAA+CGG + Chr1:52777502-52777521 MsG0180002908.01.T01:intron 35.0%
GTCATATTACTGTGTACATG+GGG - Chr1:52773475-52773494 None:intergenic 35.0%
TAAGACTAAGATGCATTCGA+AGG + Chr1:52777688-52777707 MsG0180002908.01.T01:intron 35.0%
TAAGCACAAATCACAAGCTT+AGG + Chr1:52773344-52773363 MsG0180002908.01.T01:intron 35.0%
TACAAAACAAGAGCTCTACT+GGG + Chr1:52774344-52774363 MsG0180002908.01.T01:intron 35.0%
TACAGAGAAAGTTCAAGAAC+AGG - Chr1:52779603-52779622 None:intergenic 35.0%
TAGAGTTTCCTAGAAGTAGA+AGG + Chr1:52772214-52772233 MsG0180002908.01.T01:intron 35.0%
TAGATGTATAAAGGAGGCTA+AGG + Chr1:52773308-52773327 MsG0180002908.01.T01:intron 35.0%
TCAAATGTTAAAGTCGCACA+TGG + Chr1:52778872-52778891 MsG0180002908.01.T01:intron 35.0%
TCAACCATGAAACCATGTTT+GGG - Chr1:52773375-52773394 None:intergenic 35.0%
TCATACATGTATACAGCGAT+GGG - Chr1:52772089-52772108 None:intergenic 35.0%
TCCCACATTAGACTTAACTT+TGG - Chr1:52778722-52778741 None:intergenic 35.0%
TCCCTATGTTATTGTTTCCT+AGG + Chr1:52781144-52781163 MsG0180002908.01.T01:three_prime_UTR 35.0%
TCTAGTCATGTTCATGATGT+GGG - Chr1:52778171-52778190 None:intergenic 35.0%
TGAGCGAAAAATAAGGTTCT+TGG - Chr1:52775140-52775159 None:intergenic 35.0%
TGCCTAGGAAACAATAACAT+AGG - Chr1:52781149-52781168 None:intergenic 35.0%
TGGAAATGAGCAAATCCATT+TGG + Chr1:52776642-52776661 MsG0180002908.01.T01:intron 35.0%
TGGATTGAGGTAAATGTGAA+GGG + Chr1:52777839-52777858 MsG0180002908.01.T01:intron 35.0%
TGGCATTAAGGTCATCAAAT+AGG + Chr1:52773227-52773246 MsG0180002908.01.T01:intron 35.0%
TGGTCATTATGATGCATTAG+AGG + Chr1:52780996-52781015 MsG0180002908.01.T01:CDS 35.0%
TGTATACATGTATGATCCGA+AGG + Chr1:52772094-52772113 MsG0180002908.01.T01:CDS 35.0%
TGTGAAGCAATGAACAATTC+GGG - Chr1:52780539-52780558 None:intergenic 35.0%
TTATTGGCATAGAAAAGCGA+TGG - Chr1:52772784-52772803 None:intergenic 35.0%
TTCAACCATGAAACCATGTT+TGG - Chr1:52773376-52773395 None:intergenic 35.0%
TTCTAGTCATGTTCATGATG+TGG - Chr1:52778172-52778191 None:intergenic 35.0%
TTCTTAGAGGAATAGTAGAG+AGG + Chr1:52776723-52776742 MsG0180002908.01.T01:intron 35.0%
TTGACAATCTAAGAACTTGC+TGG + Chr1:52775249-52775268 MsG0180002908.01.T01:intron 35.0%
TTTCCTAGAAGTAGAAGGAA+GGG + Chr1:52772219-52772238 MsG0180002908.01.T01:intron 35.0%
! AATAACCCATAACGGAATTC+GGG + Chr1:52774521-52774540 MsG0180002908.01.T01:intron 35.0%
! CAACACCAACACTTTAAAAG+AGG + Chr1:52773935-52773954 MsG0180002908.01.T01:intron 35.0%
! CATTTAGGTAAGTGGTGTTT+TGG - Chr1:52774571-52774590 None:intergenic 35.0%
! CCATGTTTTCTACTTCTACT+TGG - Chr1:52772996-52773015 None:intergenic 35.0%
! CTCCCCTAGATAAAAAGTTT+TGG - Chr1:52772909-52772928 None:intergenic 35.0%
! CTTTCTCTGTACTATTTCTC+AGG + Chr1:52779612-52779631 MsG0180002908.01.T01:CDS 35.0%
! GAACTTTGTTTGTCCTCAAA+AGG + Chr1:52775627-52775646 MsG0180002908.01.T01:intron 35.0%
! GAATAACCCATAACGGAATT+CGG + Chr1:52774520-52774539 MsG0180002908.01.T01:intron 35.0%
! GACATCTTCAGGTTTATTGA+AGG + Chr1:52780458-52780477 MsG0180002908.01.T01:intron 35.0%
! GCCTTTTAGATGTATAAAGG+AGG + Chr1:52773302-52773321 MsG0180002908.01.T01:intron 35.0%
! TACACGGACTATTCTGTAAT+TGG + Chr1:52778905-52778924 MsG0180002908.01.T01:intron 35.0%
! TGAGTTTGACCGAATTTTCT+AGG - Chr1:52774449-52774468 None:intergenic 35.0%
! TTTAGGTTCAGTTCAGGTTA+GGG - Chr1:52780740-52780759 None:intergenic 35.0%
! TTTGATGACCTTAATGCCAA+TGG - Chr1:52773226-52773245 None:intergenic 35.0%
!! AACACCTTTTTGGGAACTTT+CGG - Chr1:52775532-52775551 None:intergenic 35.0%
!! ATAAGCACCACTTTTAACCA+TGG - Chr1:52772652-52772671 None:intergenic 35.0%
!! ATTTGGATGTTGATTTAGGG+AGG + Chr1:52772047-52772066 MsG0180002908.01.T01:intron 35.0%
!! GACATTTTAAGTATAAGGGC+AGG + Chr1:52775339-52775358 MsG0180002908.01.T01:intron 35.0%
!! GCACATTTGGATGTTGATTT+AGG + Chr1:52772043-52772062 MsG0180002908.01.T01:intron 35.0%
!! GGCATTTTGGTCATTTACTT+TGG + Chr1:52776622-52776641 MsG0180002908.01.T01:intron 35.0%
!! GGCATTTTGGTCATTTACTT+TGG - Chr1:52776641-52776622 None:intergenic 35.0%
!! TGGGTTTCTAGTTATTAACG+TGG - Chr1:52777200-52777219 None:intergenic 35.0%
!!! AACCTTATTTTTCGCTCAAC+GGG + Chr1:52775142-52775161 MsG0180002908.01.T01:intron 35.0%
!!! CTCTTTTAAAGTGTTGGTGT+TGG - Chr1:52773937-52773956 None:intergenic 35.0%
!!! CTGCTATTTTGCTACATGTT+TGG + Chr1:52772398-52772417 MsG0180002908.01.T01:intron 35.0%
!!! GAACCTTATTTTTCGCTCAA+CGG + Chr1:52775141-52775160 MsG0180002908.01.T01:intron 35.0%
!!! GCATCAGTTGGCTTTATTTT+TGG + Chr1:52778765-52778784 MsG0180002908.01.T01:intron 35.0%
!!! TATGGTTCAAGTTTTGGGTT+TGG + Chr1:52775046-52775065 MsG0180002908.01.T01:intron 35.0%
!!! TTCTTGTTTTTGCCAACATG+AGG - Chr1:52773448-52773467 None:intergenic 35.0%
AAAACTGGAGGAAAGTGAAG+AGG - Chr1:52778466-52778485 None:intergenic 40.0%
AAAGTGAAGAGGAGATTCCT+CGG - Chr1:52778455-52778474 None:intergenic 40.0%
AAATGCTAGAGTCGTGACTT+AGG - Chr1:52781039-52781058 None:intergenic 40.0%
AAGAATGAGTATGAGGCTGT+TGG + Chr1:52778676-52778695 MsG0180002908.01.T01:intron 40.0%
AAGTTCTTAGTTGAGGTGAG+TGG - Chr1:52775613-52775632 None:intergenic 40.0%
AATAAGGAAGCCTCATGTGT+GGG + Chr1:52780505-52780524 MsG0180002908.01.T01:CDS 40.0%
AATGGGAAAAAGAGGACAGT+TGG - Chr1:52777892-52777911 None:intergenic 40.0%
AATGTCACCAAATGTGCCAT+TGG + Chr1:52773207-52773226 MsG0180002908.01.T01:intron 40.0%
ACAAAACAAGAGCTCTACTG+GGG + Chr1:52774345-52774364 MsG0180002908.01.T01:intron 40.0%
ACAATAAGAGGAGGTTACCT+TGG + Chr1:52778563-52778582 MsG0180002908.01.T01:intron 40.0%
ACATGGTTTCATGGTTGAAG+AGG + Chr1:52773377-52773396 MsG0180002908.01.T01:intron 40.0%
ACCACATTGTACATCTTGCA+GGG - Chr1:52777494-52777513 None:intergenic 40.0%
ACGACACAGAATGACTACAA+CGG - Chr1:52779571-52779590 None:intergenic 40.0%
ACTAAGATGCATTCGAAGGT+TGG + Chr1:52777692-52777711 MsG0180002908.01.T01:intron 40.0%
ACTCACCCAAAAATGCAAGT+TGG + Chr1:52774464-52774483 MsG0180002908.01.T01:intron 40.0%
AGAAGAACTTAGATGGCATC+TGG + Chr1:52777662-52777681 MsG0180002908.01.T01:intron 40.0%
AGAGCTAGCAGATGATTTAC+GGG + Chr1:52779331-52779350 MsG0180002908.01.T01:intron 40.0%
AGCGTGAGTTAACTAATGCT+GGG - Chr1:52776557-52776576 None:intergenic 40.0%
AGGTCACTAACGACATCATA+TGG - Chr1:52773428-52773447 None:intergenic 40.0%
AGTGTGAGCGTATTGAAGTT+TGG - Chr1:52773594-52773613 None:intergenic 40.0%
ATAAGGAAGCCTCATGTATG+TGG + Chr1:52771840-52771859 MsG0180002908.01.T01:intron 40.0%
ATCAACTCAGCTGCAATTGA+CGG - Chr1:52780132-52780151 None:intergenic 40.0%
ATGTGGAGTGAGAAAGTAGT+GGG - Chr1:52780242-52780261 None:intergenic 40.0%
ATTACACTGTTGAGCTGGTT+TGG - Chr1:52774985-52775004 None:intergenic 40.0%
CAAAACCCGAATTCCGTTAT+GGG - Chr1:52774529-52774548 None:intergenic 40.0%
CAATGCAGTCTCATTGAACT+AGG - Chr1:52779022-52779041 None:intergenic 40.0%
CACATTCATGCTTTGATCCT+AGG - Chr1:52775780-52775799 None:intergenic 40.0%
CAGTTCAGTTCTTGCAGTTT+AGG - Chr1:52780757-52780776 None:intergenic 40.0%
CATCATAATGACCAAACCCA+TGG - Chr1:52780990-52781009 None:intergenic 40.0%
CCAATTAGAGTTCTGTACCA+TGG + Chr1:52780970-52780989 MsG0180002908.01.T01:CDS 40.0%
CCATGGTACAGAACTCTAAT+TGG - Chr1:52780973-52780992 None:intergenic 40.0%
CCCATAATTGTTGAACAGGA+TGG - Chr1:52778539-52778558 None:intergenic 40.0%
CCTGATACCTGCATAAAGAA+AGG - Chr1:52780607-52780626 None:intergenic 40.0%
CCTTTCTTTATGCAGGTATC+AGG + Chr1:52780604-52780623 MsG0180002908.01.T01:intron 40.0%
CGTGTCAAAGAATGAGTATG+AGG + Chr1:52778669-52778688 MsG0180002908.01.T01:intron 40.0%
CTCACCCAAAAATGCAAGTT+GGG + Chr1:52774465-52774484 MsG0180002908.01.T01:intron 40.0%
CTCTTGTATAAGTAGAGGTG+TGG - Chr1:52780288-52780307 None:intergenic 40.0%
CTTAATGCCAATGGCACATT+TGG - Chr1:52773217-52773236 None:intergenic 40.0%
CTTGAATTGGGTATGTATGG+CGG - Chr1:52776403-52776422 None:intergenic 40.0%
GAATATTTGGACGCCAAGTA+GGG - Chr1:52779835-52779854 None:intergenic 40.0%
GAATTTGTGAATGACTCCTC+TGG - Chr1:52776957-52776976 None:intergenic 40.0%
GAGAGCTAGCAGATGATTTA+CGG + Chr1:52779330-52779349 MsG0180002908.01.T01:intron 40.0%
GATCATGCTTCTCTAAGCAA+AGG + Chr1:52778585-52778604 MsG0180002908.01.T01:intron 40.0%
GCAGAAACATATTCCCTACT+TGG + Chr1:52779819-52779838 MsG0180002908.01.T01:intron 40.0%
GGAAGGTAATTTACTTGTCC+AGG - Chr1:52771923-52771942 None:intergenic 40.0%
GGAATTCTCTATACTTGCCT+AGG - Chr1:52781164-52781183 None:intergenic 40.0%
GGTAACCTCCTCTTATTGTT+TGG - Chr1:52778562-52778581 None:intergenic 40.0%
GGTAACGATGATGTTCACAA+AGG + Chr1:52773142-52773161 MsG0180002908.01.T01:intron 40.0%
GGTTTGACACTAACTGATGT+GGG - Chr1:52780111-52780130 None:intergenic 40.0%
GTGTGAGCGTATTGAAGTTT+GGG - Chr1:52773593-52773612 None:intergenic 40.0%
GTTCGAACCATGGTTAAAAG+TGG + Chr1:52772642-52772661 MsG0180002908.01.T01:intron 40.0%
GTTCTGTAGTATCTCGGAAA+AGG + Chr1:52778627-52778646 MsG0180002908.01.T01:intron 40.0%
GTTTCCTAGAAGTAGAAGGA+AGG + Chr1:52772218-52772237 MsG0180002908.01.T01:intron 40.0%
TAAATGGTGAAGGGAAGATG+TGG + Chr1:52777819-52777838 MsG0180002908.01.T01:intron 40.0%
TAACCAACTGCTGTGAAAAC+TGG + Chr1:52778976-52778995 MsG0180002908.01.T01:intron 40.0%
TAAGGAAGCCTCATGTATGT+GGG + Chr1:52771841-52771860 MsG0180002908.01.T01:intron 40.0%
TAGCGTGAGTTAACTAATGC+TGG - Chr1:52776558-52776577 None:intergenic 40.0%
TAGTTGAGGTGAGTGGTATA+TGG - Chr1:52775606-52775625 None:intergenic 40.0%
TATTCTCAGCGTTCATGTGT+TGG + Chr1:52778043-52778062 MsG0180002908.01.T01:intron 40.0%
TCAACCGAAAGTTCCCAAAA+AGG + Chr1:52775525-52775544 MsG0180002908.01.T01:intron 40.0%
TCATGCTTCTCTAAGCAAAG+GGG + Chr1:52778587-52778606 MsG0180002908.01.T01:intron 40.0%
TCGCACAATGTTGTGAACTA+AGG + Chr1:52772620-52772639 MsG0180002908.01.T01:intron 40.0%
TCTAATGTGGGACGATAACT+TGG + Chr1:52778730-52778749 MsG0180002908.01.T01:intron 40.0%
TCTCAGAAGACTTATTGTGC+AGG + Chr1:52780860-52780879 MsG0180002908.01.T01:intron 40.0%
TCTGAGTATGGCCAAGAATA+CGG + Chr1:52772137-52772156 MsG0180002908.01.T01:intron 40.0%
TCTTTGCATTCCTTGTGCTT+GGG + Chr1:52772464-52772483 MsG0180002908.01.T01:intron 40.0%
TGAGGATTGTGTTAGGTGTA+TGG - Chr1:52775867-52775886 None:intergenic 40.0%
TGCAGGTATCAGGTATGTAT+AGG + Chr1:52780614-52780633 MsG0180002908.01.T01:intron 40.0%
TGCATGACTTAACTCACACA+GGG + Chr1:52776600-52776619 MsG0180002908.01.T01:intron 40.0%
TGGGAGTGAGCAATCTATTT+GGG - Chr1:52776454-52776473 None:intergenic 40.0%
TGTGAAGCAACGAACAATTC+GGG - Chr1:52771874-52771893 None:intergenic 40.0%
TGTGAGCGTATTGAAGTTTG+GGG - Chr1:52773592-52773611 None:intergenic 40.0%
TTAAGAGACGCTACGAAAAC+AGG + Chr1:52771994-52772013 MsG0180002908.01.T01:intron 40.0%
TTCAGTTATGCGTCATTAGG+TGG + Chr1:52777546-52777565 MsG0180002908.01.T01:intron 40.0%
TTCTTTGCATTCCTTGTGCT+TGG + Chr1:52772463-52772482 MsG0180002908.01.T01:intron 40.0%
TTGAATTGGGTATGTATGGC+GGG - Chr1:52776402-52776421 None:intergenic 40.0%
TTGACAACAAGTGAAGCTCA+AGG + Chr1:52776348-52776367 MsG0180002908.01.T01:intron 40.0%
TTGCTTGTGAGGATTGTGTT+AGG - Chr1:52775874-52775893 None:intergenic 40.0%
TTGGCCCATAATTGTTGAAC+AGG - Chr1:52778543-52778562 None:intergenic 40.0%
TTGGGAGTGAGCAATCTATT+TGG - Chr1:52776455-52776474 None:intergenic 40.0%
TTGGGGAATGTACAAGAGAA+CGG - Chr1:52773054-52773073 None:intergenic 40.0%
! AAAGCTGTTGTTTGGGAAGA+AGG - Chr1:52780000-52780019 None:intergenic 40.0%
! AAAGCTTGTTCCATCTTCCT+GGG - Chr1:52777378-52777397 None:intergenic 40.0%
! ACTTAGCCATGCTATTGACT+TGG - Chr1:52775839-52775858 None:intergenic 40.0%
! ATGGTTTGTGATCGAGAGAA+AGG + Chr1:52773025-52773044 MsG0180002908.01.T01:intron 40.0%
! CAAATGTGCCATTGGCATTA+AGG + Chr1:52773215-52773234 MsG0180002908.01.T01:intron 40.0%
! CCAAAAATGCAAGTTGGGTT+GGG + Chr1:52774470-52774489 MsG0180002908.01.T01:intron 40.0%
! CCAACCCAACTTGCATTTTT+GGG - Chr1:52774472-52774491 None:intergenic 40.0%
! CTTTCCTCCAGTTTTCAGAT+CGG + Chr1:52778471-52778490 MsG0180002908.01.T01:intron 40.0%
! GACAAGTCTTGTAGGTCTTA+AGG - Chr1:52773783-52773802 None:intergenic 40.0%
! GACTTAGGACCCTTCTTTTT+AGG - Chr1:52781024-52781043 None:intergenic 40.0%
! GATTTTCCTTGCCGTATTCT+TGG - Chr1:52772151-52772170 None:intergenic 40.0%
! GTGGATTGAGGTAAATGTGA+AGG + Chr1:52777838-52777857 MsG0180002908.01.T01:intron 40.0%
! GTTTAGGTTCAGTTCAGGTT+AGG - Chr1:52780741-52780760 None:intergenic 40.0%
! TAAAACTTACGGTACTGAGC+AGG + Chr1:52779218-52779237 MsG0180002908.01.T01:intron 40.0%
! TAAAGCTTGTTCCATCTTCC+TGG - Chr1:52777379-52777398 None:intergenic 40.0%
! TCTCTCTGAAAGCTTTCACT+GGG - Chr1:52779314-52779333 None:intergenic 40.0%
! TTGCAGTTTAGGTTCAGTTC+AGG - Chr1:52780746-52780765 None:intergenic 40.0%
! TTTCCTCCAGTTTTCAGATC+GGG + Chr1:52778472-52778491 MsG0180002908.01.T01:intron 40.0%
!! AAGAACTTGCTGGTTTGTCT+TGG + Chr1:52775259-52775278 MsG0180002908.01.T01:intron 40.0%
!! CATAACGGAATTCGGGTTTT+GGG + Chr1:52774528-52774547 MsG0180002908.01.T01:intron 40.0%
!! CTTGTGTTAGAGTGTTGTGA+GGG - Chr1:52773641-52773660 None:intergenic 40.0%
!! GAGCTTCACTTGTTGTCAAA+GGG - Chr1:52776347-52776366 None:intergenic 40.0%
!! TCTTGTGTTAGAGTGTTGTG+AGG - Chr1:52773642-52773661 None:intergenic 40.0%
!! TGAGCTTCACTTGTTGTCAA+AGG - Chr1:52776348-52776367 None:intergenic 40.0%
!! TGTCTTTGAACTTGGCTTGT+TGG + Chr1:52774771-52774790 MsG0180002908.01.T01:intron 40.0%
!! TTGTGTTAGAGTGTTGTGAG+GGG - Chr1:52773640-52773659 None:intergenic 40.0%
!! TTTTGGGTAAAACCAGACCT+AGG + Chr1:52774544-52774563 MsG0180002908.01.T01:intron 40.0%
!!! AGTTTTTTTCATGGCTGCCA+AGG - Chr1:52779421-52779440 None:intergenic 40.0%
!!! TTTTGAAGCGCAAGACAAGT+AGG - Chr1:52773836-52773855 None:intergenic 40.0%
AAAGGGGAAGCAGAGTTGTA+AGG - Chr1:52776872-52776891 None:intergenic 45.0%
AAAGGGGGACTATGGTAATC+CGG + Chr1:52777308-52777327 MsG0180002908.01.T01:intron 45.0%
AAGTGAAGAGGAGATTCCTC+GGG - Chr1:52778454-52778473 None:intergenic 45.0%
AATTGTTCCACCCAGGAAGA+TGG + Chr1:52777365-52777384 MsG0180002908.01.T01:intron 45.0%
ACACCCCTATAGAGGAGATT+GGG + Chr1:52775095-52775114 MsG0180002908.01.T01:intron 45.0%
ACTCCTACACTACATGAGAG+TGG - Chr1:52772323-52772342 None:intergenic 45.0%
ACTCGCTCATTGAACATGTC+AGG + Chr1:52775171-52775190 MsG0180002908.01.T01:intron 45.0%
AGAGTTCTGTACCATGGGTT+TGG + Chr1:52780976-52780995 MsG0180002908.01.T01:CDS 45.0%
AGTCATGCAGAGCTTTACAC+AGG - Chr1:52776589-52776608 None:intergenic 45.0%
AGTCATTCTGTGTCGTGTCT+AGG + Chr1:52779575-52779594 MsG0180002908.01.T01:intron 45.0%
AGTCCTGTGGTATGTAGCTA+GGG - Chr1:52773090-52773109 None:intergenic 45.0%
AGTGTAGAAACCCTCTTCCT+TGG + Chr1:52779401-52779420 MsG0180002908.01.T01:intron 45.0%
ATAAAGGAGGCTAAGGCCAA+GGG + Chr1:52773315-52773334 MsG0180002908.01.T01:intron 45.0%
ATAAGGAAGCCTCATGTGTG+GGG + Chr1:52780506-52780525 MsG0180002908.01.T01:CDS 45.0%
ATCGCCCAATCTCCTCTATA+GGG - Chr1:52775102-52775121 None:intergenic 45.0%
ATCTAACCGTTCCGTTTCCA+GGG + Chr1:52777284-52777303 MsG0180002908.01.T01:intron 45.0%
ATGGGCCAAACAATAAGAGG+AGG + Chr1:52778554-52778573 MsG0180002908.01.T01:intron 45.0%
ATGTTCAATGAGCGAGTAGG+AGG - Chr1:52775168-52775187 None:intergenic 45.0%
ATGTTTCGCTCAGTTGCTCA+CGG + Chr1:52779263-52779282 MsG0180002908.01.T01:intron 45.0%
CAATCTTATGGTCAAGGGCT+AGG + Chr1:52772581-52772600 MsG0180002908.01.T01:intron 45.0%
CACCACATTGTACATCTTGC+AGG - Chr1:52777495-52777514 None:intergenic 45.0%
CCAAAACCCGAATTCCGTTA+TGG - Chr1:52774530-52774549 None:intergenic 45.0%
CCACATTGTACATCTTGCAG+GGG - Chr1:52777493-52777512 None:intergenic 45.0%
CCATGAAACCATGTTTGGGT+AGG - Chr1:52773371-52773390 None:intergenic 45.0%
CCTACCCAAACATGGTTTCA+TGG + Chr1:52773368-52773387 MsG0180002908.01.T01:intron 45.0%
CGGTTTGACACTAACTGATG+TGG - Chr1:52780112-52780131 None:intergenic 45.0%
CTCACGATAAGCTGAAAAGC+TGG + Chr1:52777250-52777269 MsG0180002908.01.T01:intron 45.0%
CTCTTGTACATTCCCCAAGA+AGG + Chr1:52773056-52773075 MsG0180002908.01.T01:intron 45.0%
CTGCATGACTTAACTCACAC+AGG + Chr1:52776599-52776618 MsG0180002908.01.T01:intron 45.0%
CTTTGCATTCCTTGTGCTTG+GGG + Chr1:52772465-52772484 MsG0180002908.01.T01:intron 45.0%
GAACCCTTCCTTCTACTTCT+AGG - Chr1:52772225-52772244 None:intergenic 45.0%
GAACGAGGCTTATGCACATT+TGG + Chr1:52772030-52772049 MsG0180002908.01.T01:intron 45.0%
GAATAAGGAAGCCTCATGTG+TGG + Chr1:52780504-52780523 MsG0180002908.01.T01:CDS 45.0%
GACAAAGAATTGTTCCACCC+AGG + Chr1:52777358-52777377 MsG0180002908.01.T01:intron 45.0%
GACATGTTCAATGAGCGAGT+AGG - Chr1:52775171-52775190 None:intergenic 45.0%
GACTTACGTTTCCATTGCAC+TGG + Chr1:52778196-52778215 MsG0180002908.01.T01:intron 45.0%
GATGTGGAGTGAGAAAGTAG+TGG - Chr1:52780243-52780262 None:intergenic 45.0%
GCACATGCGGAAGCAAATTA+TGG + Chr1:52778819-52778838 MsG0180002908.01.T01:intron 45.0%
GCATGACTTAACTCACACAG+GGG + Chr1:52776601-52776620 MsG0180002908.01.T01:intron 45.0%
GCTGAGTATGGCCAAGAATA+CGG + Chr1:52780937-52780956 MsG0180002908.01.T01:CDS 45.0%
GGAAAAAGAGGACAGTTGGT+TGG - Chr1:52777888-52777907 None:intergenic 45.0%
GGAATATTTGGACGCCAAGT+AGG - Chr1:52779836-52779855 None:intergenic 45.0%
GGGTGGAACAATTCTTTGTC+AGG - Chr1:52777358-52777377 None:intergenic 45.0%
GTGAACTAAGGTTCGAACCA+TGG + Chr1:52772632-52772651 MsG0180002908.01.T01:intron 45.0%
GTTCATCTCCCACATACATG+AGG - Chr1:52771852-52771871 None:intergenic 45.0%
TAAAAACCGGCCTTTAGCTG+AGG + Chr1:52781257-52781276 MsG0180002908.01.T01:three_prime_UTR 45.0%
TAAAATCGGACTGAACCGGA+CGG - Chr1:52779070-52779089 None:intergenic 45.0%
TACACCCCTATAGAGGAGAT+TGG + Chr1:52775094-52775113 MsG0180002908.01.T01:intron 45.0%
TACATGTATGATCCGAAGGC+TGG + Chr1:52772098-52772117 MsG0180002908.01.T01:CDS 45.0%
TACATGTATGATCGGGAAGC+TGG + Chr1:52780898-52780917 MsG0180002908.01.T01:CDS 45.0%
TACTGGTGCTCAACAAGCTA+AGG + Chr1:52772857-52772876 MsG0180002908.01.T01:intron 45.0%
TAGAATCTACCCCAAGCACA+AGG - Chr1:52772477-52772496 None:intergenic 45.0%
TAGCCACTCTCATGTAGTGT+AGG + Chr1:52772317-52772336 MsG0180002908.01.T01:intron 45.0%
TAGGGCTGTTGTTCCTTCTT+GGG - Chr1:52773072-52773091 None:intergenic 45.0%
TAGTCCTGTGGTATGTAGCT+AGG - Chr1:52773091-52773110 None:intergenic 45.0%
TATAAAGGAGGCTAAGGCCA+AGG + Chr1:52773314-52773333 MsG0180002908.01.T01:intron 45.0%
TATCGCCCAATCTCCTCTAT+AGG - Chr1:52775103-52775122 None:intergenic 45.0%
TGAATGCCCGATCTGAAAAC+TGG - Chr1:52778481-52778500 None:intergenic 45.0%
TGTATTCCTCAGCTAAAGGC+CGG - Chr1:52781266-52781285 None:intergenic 45.0%
TGTCGTTAGTGACCTCATGT+TGG + Chr1:52773433-52773452 MsG0180002908.01.T01:intron 45.0%
TTGGGGTGGTTGAGGTTATT+GGG - Chr1:52773575-52773594 None:intergenic 45.0%
TTGGTCTGCACGTCAAGAAA+TGG + Chr1:52773757-52773776 MsG0180002908.01.T01:intron 45.0%
TTTGTGCTTATGACCTCCCT+TGG - Chr1:52773334-52773353 None:intergenic 45.0%
! AAAGTAGTGGGAGGAAGATG+AGG - Chr1:52780230-52780249 None:intergenic 45.0%
! AGCAGATGATTTACGGGCTA+AGG + Chr1:52779337-52779356 MsG0180002908.01.T01:intron 45.0%
! ATGTCAGGTTTTCGCTCAAC+AGG + Chr1:52775186-52775205 MsG0180002908.01.T01:intron 45.0%
! ATTGAAGTTTGGGGTGGTTG+AGG - Chr1:52773583-52773602 None:intergenic 45.0%
! CAACCAGTTTTCACAGCAGT+TGG - Chr1:52778982-52779001 None:intergenic 45.0%
! CCCAAAAATGCAAGTTGGGT+TGG + Chr1:52774469-52774488 MsG0180002908.01.T01:intron 45.0%
! CCCAACCCAACTTGCATTTT+TGG - Chr1:52774473-52774492 None:intergenic 45.0%
! CTCTCTCTGAAAGCTTTCAC+TGG - Chr1:52779315-52779334 None:intergenic 45.0%
! GAGAGTGCATTGCGTCAATT+TGG - Chr1:52774674-52774693 None:intergenic 45.0%
! GATGGATGTACTGGTGTGTA+TGG + Chr1:52773184-52773203 MsG0180002908.01.T01:intron 45.0%
! GCTTAGAGAAGCATGATCCA+AGG - Chr1:52778583-52778602 None:intergenic 45.0%
! GTCAGGTTGTAGTTACCTCA+CGG - Chr1:52777341-52777360 None:intergenic 45.0%
! GTCAGTTTTCCTAAGCGAGT+AGG - Chr1:52775215-52775234 None:intergenic 45.0%
! TGAAGGGAAGATGTGGATTG+AGG + Chr1:52777826-52777845 MsG0180002908.01.T01:intron 45.0%
! TTTGGGGTGGTTGAGGTTAT+TGG - Chr1:52773576-52773595 None:intergenic 45.0%
!! AAGTTCTGAACCTGCACATG+CGG + Chr1:52778806-52778825 MsG0180002908.01.T01:intron 45.0%
!! AGGGTTCTAAGTCAAGACTC+TGG + Chr1:52772238-52772257 MsG0180002908.01.T01:intron 45.0%
!! AGTTTTTCAGATGTCACGCC+TGG + Chr1:52777982-52778001 MsG0180002908.01.T01:intron 45.0%
!! CCATAACGGAATTCGGGTTT+TGG + Chr1:52774527-52774546 MsG0180002908.01.T01:intron 45.0%
!! TAATTTGCTTCCGCATGTGC+AGG - Chr1:52778819-52778838 None:intergenic 45.0%
!! TCCATTGCACTGGTTCTCTA+CGG + Chr1:52778206-52778225 MsG0180002908.01.T01:intron 45.0%
!! TTTAGGGAGGCTGATTTTGC+AGG + Chr1:52772060-52772079 MsG0180002908.01.T01:intron 45.0%
!!! TAACTCACACAGGGGCATTT+TGG + Chr1:52776609-52776628 MsG0180002908.01.T01:intron 45.0%
!!! TGTCACGCCTGGTCATTTTT+TGG + Chr1:52777993-52778012 MsG0180002908.01.T01:intron 45.0%
!!! ATATTTTATCAAAATATTAT+AGG + Chr1:52774116-52774135 MsG0180002908.01.T01:intron 5.0%
!!! TTTTTTAATTTATTTTAAAC+GGG + Chr1:52777138-52777157 MsG0180002908.01.T01:intron 5.0%
!!! TTTTTTTAATATAGAAAAAT+GGG - Chr1:52777909-52777928 None:intergenic 5.0%
AACAGGCTTCCTACTCGCTT+AGG + Chr1:52775203-52775222 MsG0180002908.01.T01:intron 50.0%
AACATGCATCTTCCATCCCC+AGG - Chr1:52779248-52779267 None:intergenic 50.0%
AGAACAACCCAGAGGAGTAG+CGG + Chr1:52774404-52774423 MsG0180002908.01.T01:intron 50.0%
AGAGGAGTAGCGGTGTACAT+GGG + Chr1:52774414-52774433 MsG0180002908.01.T01:intron 50.0%
AGGGCTGTTGTTCCTTCTTG+GGG - Chr1:52773071-52773090 None:intergenic 50.0%
ATGCCCGATCTGAAAACTGG+AGG - Chr1:52778478-52778497 None:intergenic 50.0%
ATGTACACCGCTACTCCTCT+GGG - Chr1:52774414-52774433 None:intergenic 50.0%
ATGTATGATCCGAAGGCTGG+TGG + Chr1:52772101-52772120 MsG0180002908.01.T01:CDS 50.0%
ATGTATGATCGGGAAGCTGG+TGG + Chr1:52780901-52780920 MsG0180002908.01.T01:CDS 50.0%
CAACCAACAAGTGAACCGTC+CGG + Chr1:52779052-52779071 MsG0180002908.01.T01:intron 50.0%
CATCTAACCGTTCCGTTTCC+AGG + Chr1:52777283-52777302 MsG0180002908.01.T01:intron 50.0%
CCCCTGCAAGATGTACAATG+TGG + Chr1:52777490-52777509 MsG0180002908.01.T01:intron 50.0%
CGTGAGTTAACTCATGCTGC+GGG - Chr1:52776513-52776532 None:intergenic 50.0%
CTAGGGCTGTTGTTCCTTCT+TGG - Chr1:52773073-52773092 None:intergenic 50.0%
CTGGAAACGGAACGGTTAGA+TGG - Chr1:52777285-52777304 None:intergenic 50.0%
GAAAACATGGCGGTCAGTCA+TGG + Chr1:52773006-52773025 MsG0180002908.01.T01:intron 50.0%
GAGCGTATTGAAGTTTGGGG+TGG - Chr1:52773589-52773608 None:intergenic 50.0%
GATATCAAGCCACCAGCCTT+CGG - Chr1:52772113-52772132 None:intergenic 50.0%
GCGTGAGTTAACTCATGCTG+CGG - Chr1:52776514-52776533 None:intergenic 50.0%
GGCCCGTTGAGCGAAAAATA+AGG - Chr1:52775147-52775166 None:intergenic 50.0%
GTACTGAGCAGGAATTCCTG+GGG + Chr1:52779229-52779248 MsG0180002908.01.T01:intron 50.0%
GTATGGCCAAGAATACGGCA+AGG + Chr1:52772142-52772161 MsG0180002908.01.T01:intron 50.0%
GTCAAGGGCTAGGTCTTGAA+TGG + Chr1:52772591-52772610 MsG0180002908.01.T01:intron 50.0%
GTTACCTCACGGTTGAACTC+CGG - Chr1:52777330-52777349 None:intergenic 50.0%
TAATCCGGAGTTCAACCGTG+AGG + Chr1:52777323-52777342 MsG0180002908.01.T01:intron 50.0%
TCATGCTGCGGGAGTTAACT+AGG - Chr1:52776502-52776521 None:intergenic 50.0%
TCCGTAGAGAACCAGTGCAA+TGG - Chr1:52778210-52778229 None:intergenic 50.0%
TCGCCCAATCTCCTCTATAG+GGG - Chr1:52775101-52775120 None:intergenic 50.0%
TCTAACCGTTCCGTTTCCAG+GGG + Chr1:52777285-52777304 MsG0180002908.01.T01:intron 50.0%
TGAAAGCTTTCACTGGGAGG+CGG - Chr1:52779308-52779327 None:intergenic 50.0%
TGAAGCGCAAGACAAGTAGG+CGG - Chr1:52773833-52773852 None:intergenic 50.0%
TGTTTCGCTCAGTTGCTCAC+GGG + Chr1:52779264-52779283 MsG0180002908.01.T01:intron 50.0%
TTCATGGCTGCCAAGGAAGA+GGG - Chr1:52779414-52779433 None:intergenic 50.0%
TTTCATGGCTGCCAAGGAAG+AGG - Chr1:52779415-52779434 None:intergenic 50.0%
! CTCTGAAAGCTTTCACTGGG+AGG - Chr1:52779311-52779330 None:intergenic 50.0%
! GGTACTGAGCAGGAATTCCT+GGG + Chr1:52779228-52779247 MsG0180002908.01.T01:intron 50.0%
! TCCTCTATAGGGGTGTACGT+GGG - Chr1:52775091-52775110 None:intergenic 50.0%
! TGGAGTGAGAAAGTAGTGGG+AGG - Chr1:52780239-52780258 None:intergenic 50.0%
!! GTAAGTGGTGTTTTGGGCCT+AGG - Chr1:52774564-52774583 None:intergenic 50.0%
ACCCACGTACACCCCTATAG+AGG + Chr1:52775087-52775106 MsG0180002908.01.T01:intron 55.0%
ACCCGACCCAGAAGAGTAGT+AGG + Chr1:52776376-52776395 MsG0180002908.01.T01:intron 55.0%
ATCTGCAGTCTTCAGACCCG+AGG + Chr1:52778435-52778454 MsG0180002908.01.T01:intron 55.0%
CAGAGGAGTAGCGGTGTACA+TGG + Chr1:52774413-52774432 MsG0180002908.01.T01:intron 55.0%
CAGCCCTAGCTACATACCAC+AGG + Chr1:52773084-52773103 MsG0180002908.01.T01:intron 55.0%
CATGTACACCGCTACTCCTC+TGG - Chr1:52774415-52774434 None:intergenic 55.0%
CCAACTGATGCACAACTGCG+TGG - Chr1:52778756-52778775 None:intergenic 55.0%
CCACGCAGTTGTGCATCAGT+TGG + Chr1:52778753-52778772 MsG0180002908.01.T01:intron 55.0%
CCTTTCCCCTGGAAACGGAA+CGG - Chr1:52777293-52777312 None:intergenic 55.0%
CGTTCCGTTTCCAGGGGAAA+GGG + Chr1:52777291-52777310 MsG0180002908.01.T01:intron 55.0%
GAACCGGACGGTTCACTTGT+TGG - Chr1:52779058-52779077 None:intergenic 55.0%
GAGTAGCGGTGTACATGGGT+GGG + Chr1:52774418-52774437 MsG0180002908.01.T01:intron 55.0%
GCCTACTACTCTTCTGGGTC+GGG - Chr1:52776380-52776399 None:intergenic 55.0%
GCTTAGGGCCTACCCAAACA+TGG + Chr1:52773360-52773379 MsG0180002908.01.T01:intron 55.0%
GCTTGTTCCATCTTCCTGGG+TGG - Chr1:52777375-52777394 None:intergenic 55.0%
GGCCTACTACTCTTCTGGGT+CGG - Chr1:52776381-52776400 None:intergenic 55.0%
GTTCCGTTTCCAGGGGAAAG+GGG + Chr1:52777292-52777311 MsG0180002908.01.T01:intron 55.0%
TGAGCAGGAATTCCTGGGGA+TGG + Chr1:52779233-52779252 MsG0180002908.01.T01:intron 55.0%
TTCCGTTTCCAGGGGAAAGG+GGG + Chr1:52777293-52777312 MsG0180002908.01.T01:intron 55.0%
! CGGTACTGAGCAGGAATTCC+TGG + Chr1:52779227-52779246 MsG0180002908.01.T01:intron 55.0%
! CTATAGGGGTGTACGTGGGT+GGG - Chr1:52775087-52775106 None:intergenic 55.0%
! CTCCTCTATAGGGGTGTACG+TGG - Chr1:52775092-52775111 None:intergenic 55.0%
! GGGTAAAGGGGTGCGTTTCA+TGG - Chr1:52779954-52779973 None:intergenic 55.0%
! GTTGCTCACGGGCTTGTTTG+AGG + Chr1:52779275-52779294 MsG0180002908.01.T01:intron 55.0%
! TCACGGGCTTGTTTGAGGTC+AGG + Chr1:52779280-52779299 MsG0180002908.01.T01:intron 55.0%
! TCTATAGGGGTGTACGTGGG+TGG - Chr1:52775088-52775107 None:intergenic 55.0%
!! TGGGTGGGTTGGGTTGGATT+TGG - Chr1:52775072-52775091 None:intergenic 55.0%
!! TGGTGTTTTGGGCCTAGGTC+TGG - Chr1:52774559-52774578 None:intergenic 55.0%
AAGGAGGCTAAGGCCAAGGG+AGG + Chr1:52773318-52773337 MsG0180002908.01.T01:intron 60.0%
ACCATAGTCCCCCTTTCCCC+TGG - Chr1:52777304-52777323 None:intergenic 60.0%
AGGAAGCCTCATGTGTGGGG+AGG + Chr1:52780509-52780528 MsG0180002908.01.T01:CDS 60.0%
CCGTTCCGTTTCCAGGGGAA+AGG + Chr1:52777290-52777309 MsG0180002908.01.T01:intron 60.0%
GGAGTAGCGGTGTACATGGG+TGG + Chr1:52774417-52774436 MsG0180002908.01.T01:intron 60.0%
GGCGGGCCTACTACTCTTCT+GGG - Chr1:52776385-52776404 None:intergenic 60.0%
GTCCCCCTTTCCCCTGGAAA+CGG - Chr1:52777298-52777317 None:intergenic 60.0%
TCCAGGGGAAAGGGGGACTA+TGG + Chr1:52777300-52777319 MsG0180002908.01.T01:intron 60.0%
! TGGCGGGCCTACTACTCTTC+TGG - Chr1:52776386-52776405 None:intergenic 60.0%
!! TGTACGTGGGTGGGTTGGGT+TGG - Chr1:52775078-52775097 None:intergenic 60.0%
GGTTCGCCTCCCCACACATG+AGG - Chr1:52780518-52780537 None:intergenic 65.0%
! AGGGGTGTACGTGGGTGGGT+TGG - Chr1:52775083-52775102 None:intergenic 65.0%
! GGGGTGTACGTGGGTGGGTT+GGG - Chr1:52775082-52775101 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 52771502 52781303 52771502 ID=MsG0180002908.01;Name=MsG0180002908.01
Chr1 mRNA 52771502 52781303 52771502 ID=MsG0180002908.01.T01;Parent=MsG0180002908.01;Name=MsG0180002908.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.25|0.2|1|0.75|0.6|5|250|157
Chr1 exon 52771502 52771578 52771502 ID=MsG0180002908.01.T01:exon:22100;Parent=MsG0180002908.01.T01
Chr1 exon 52772082 52772141 52772082 ID=MsG0180002908.01.T01:exon:22101;Parent=MsG0180002908.01.T01
Chr1 exon 52779597 52779673 52779597 ID=MsG0180002908.01.T01:exon:22102;Parent=MsG0180002908.01.T01
Chr1 exon 52780480 52780567 52780480 ID=MsG0180002908.01.T01:exon:22103;Parent=MsG0180002908.01.T01
Chr1 exon 52780882 52781303 52780882 ID=MsG0180002908.01.T01:exon:22104;Parent=MsG0180002908.01.T01
Chr1 CDS 52771502 52771578 52771502 ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1 CDS 52772082 52772141 52772082 ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1 CDS 52779597 52779673 52779597 ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1 CDS 52780480 52780567 52780480 ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1 CDS 52780882 52781053 52780882 ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1 three_prime_UTR 52781054 52781303 52781054 ID=MsG0180002908.01.T01:three_prime_utr;Parent=MsG0180002908.01.T01
Gene Sequence

>MsG0180002908.01.T01

ATGTTCTTGATTATTCTTTGTTTTATTTGTCAGGTTGCTGATGAGTATGTCAAAAGAAAGGAACAGATGAAACAATGGATGCCCATCGCTGTATACATGTATGATCCGAAGGCTGGTGGCTTGATATCAAAATCTGAGTCCCTGTTCTTGAACTTTCTCTGTACTATTTCTCAGGTTGCTGATGAGTTTATTAAAGAAGGGAGAAAACAGAATGGTGATTTTGATTCATATATTTCACGAATAAGGAAGCCTCATGTGTGGGGAGGCGAACCCGAATTGTTCATTGCTTCACATGTTTTGCAGATGCCAATCACTGTATACATGTATGATCGGGAAGCTGGTGGCTTGATATCAATAGCTGAGTATGGCCAAGAATACGGCAAGGAAAATCCAATTAGAGTTCTGTACCATGGGTTTGGTCATTATGATGCATTAGAGGTTCCTAAAAAGAAGGGTCCTAAGTCACGACTCTAG
Protein sequence

>MsG0180002908.01.T01

MFLIILCFICQVADEYVKRKEQMKQWMPIAVYMYDPKAGGLISKSESLFLNFLCTISQVADEFIKEGRKQNGDFDSYISRIRKPHVWGGEPELFIASHVLQMPITVYMYDREAGGLISIAEYGQEYGKENPIRVLYHGFGHYDALEVPKKKGPKSRL*