AlfalfaGEDB | MsG0180002908.01

M. sativa cultivar ZhongmuNo.1 / MsG0180002908.01

KEGG: -
GO: -
PFAM: PF02338

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002908.01.T01	GAU33385.1	84.762	105	12	1	57	157	233	337	1.74E-55	187

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002908.01.T01	Q8LBZ4	69.159	107	27	2	57	157	211	317	5.33E-45	152

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002908.01.T01	A0A072VIC0	85.714	105	11	1	57	157	233	337	1.10e-55	187
MsG0180002908.01.T01	A0A2Z6NBI9	84.762	105	12	1	57	157	233	337	8.33e-56	187

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001085.01	MsG0180002908.01	0.800854	1.185399e-48	5.578311e-46
MsG0180001270.01	MsG0180002908.01	0.810206	1.293423e-50	7.748814e-48
MsG0180002908.01	MsG0380015603.01	0.801407	9.137543e-49	4.360275e-46
MsG0180002908.01	MsG0380016192.01	0.802725	4.894810e-49	2.415453e-46
MsG0180002908.01	MsG0380017703.01	0.827522	1.493180e-54	1.444997e-51
MsG0180002908.01	MsG0380017785.01	0.831523	1.590693e-55	1.730598e-52
MsG0180002908.01	MsG0380018069.01	0.808011	3.819568e-50	2.159487e-47
MsG0180002908.01	MsG0480020408.01	0.803998	2.667928e-49	1.360175e-46
MsG0180002908.01	MsG0480020690.01	0.808017	3.808306e-50	2.153441e-47
MsG0180002908.01	MsG0480023314.01	0.812950	3.274745e-51	2.110350e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002908.01.T01	MTR_1g052405	85.714	105	11	1	57	157	233	337	2.80e-59	187
MsG0180002908.01.T01	MTR_1g052380	72.897	107	22	3	58	157	100	206	5.54e-46	149
MsG0180002908.01.T01	MTR_3g085620	60.638	94	33	1	57	146	81	174	1.88e-34	119
MsG0180002908.01.T01	MTR_1g492730	46.875	96	45	2	58	147	209	304	6.55e-23	92.4
MsG0180002908.01.T01	MTR_4g014750	41.026	78	37	2	77	145	151	228	3.13e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002908.01.T01	AT3G57810	69.159	107	27	2	57	157	211	317	5.43e-46	152
MsG0180002908.01.T01	AT3G57810	69.159	107	27	2	57	157	211	317	5.43e-46	152
MsG0180002908.01.T01	AT3G57810	69.159	107	27	2	57	157	211	317	5.43e-46	152

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Find 51 sgRNAs with CRISPR-Local

Find 637 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGGAGAAAACAGAA+TGG	0.645492	1:+52779652	MsG0180002908.01.T01:CDS
AAATGCTAGAGTCGTGACTT+AGG	0.524456	1:-52781036	None:intergenic
AAGTATAGAGAATTCCGTTA+TGG	0.505129	1:+52781168	MsG0180002908.01.T01:three_prime_UTR
AATAAGGAAGCCTCATGTGT+GGG	0.572470	1:+52780505	MsG0180002908.01.T01:CDS
AATTCTCTCCTTGAATTAAG+GGG	0.510172	1:-52781218	None:intergenic
ACAAAGAATAATCAAGAACA+TGG	0.652492	1:-52771500	None:intergenic
ACAGAGAAAGTTCAAGAACA+GGG	0.639249	1:-52779599	None:intergenic
AGAGTTCTGTACCATGGGTT+TGG	0.408095	1:+52780976	MsG0180002908.01.T01:CDS
AGGAAGCCTCATGTGTGGGG+AGG	0.655210	1:+52780509	MsG0180002908.01.T01:CDS
ATAAGGAAGCCTCATGTGTG+GGG	0.667700	1:+52780506	MsG0180002908.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATGAAGTGGGTAAAG+GGG	-	Chr1:52779966-52779985	None:intergenic	30.0%
AAAATGCAATCTTATGGTCA+AGG	+	Chr1:52772575-52772594	MsG0180002908.01.T01:intron	30.0%
AAAGTTTGCATTTAGGTAAG+TGG	-	Chr1:52774579-52774598	None:intergenic	30.0%
AAATGCAATCTTATGGTCAA+GGG	+	Chr1:52772576-52772595	MsG0180002908.01.T01:intron	30.0%
AAATTCACCTTTCTTTATGC+AGG	+	Chr1:52780597-52780616	MsG0180002908.01.T01:intron	30.0%
AAATTCAGTTATGCGTCATT+AGG	+	Chr1:52777543-52777562	MsG0180002908.01.T01:intron	30.0%
AACTCAAATAAACCAGCATA+AGG	-	Chr1:52771944-52771963	None:intergenic	30.0%
AAGTATAGAGAATTCCGTTA+TGG	+	Chr1:52781168-52781187	MsG0180002908.01.T01:three_prime_UTR	30.0%
AATAAAATAAGGCCTTCTTC+TGG	-	Chr1:52779777-52779796	None:intergenic	30.0%
AATAAGTAGATGTAAGTGGT+TGG	-	Chr1:52779888-52779907	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	52771502	52781303	52771502	ID=MsG0180002908.01;Name=MsG0180002908.01
Chr1	mRNA	52771502	52781303	52771502	ID=MsG0180002908.01.T01;Parent=MsG0180002908.01;Name=MsG0180002908.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|0.25\|0.2\|1\|0.75\|0.6\|5\|250\|157
Chr1	exon	52771502	52771578	52771502	ID=MsG0180002908.01.T01:exon:22100;Parent=MsG0180002908.01.T01
Chr1	exon	52772082	52772141	52772082	ID=MsG0180002908.01.T01:exon:22101;Parent=MsG0180002908.01.T01
Chr1	exon	52779597	52779673	52779597	ID=MsG0180002908.01.T01:exon:22102;Parent=MsG0180002908.01.T01
Chr1	exon	52780480	52780567	52780480	ID=MsG0180002908.01.T01:exon:22103;Parent=MsG0180002908.01.T01
Chr1	exon	52780882	52781303	52780882	ID=MsG0180002908.01.T01:exon:22104;Parent=MsG0180002908.01.T01
Chr1	CDS	52771502	52771578	52771502	ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1	CDS	52772082	52772141	52772082	ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1	CDS	52779597	52779673	52779597	ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1	CDS	52780480	52780567	52780480	ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1	CDS	52780882	52781053	52780882	ID=MsG0180002908.01.T01:cds;Parent=MsG0180002908.01.T01
Chr1	three_prime_UTR	52781054	52781303	52781054	ID=MsG0180002908.01.T01:three_prime_utr;Parent=MsG0180002908.01.T01

Gene Sequence

>MsG0180002908.01.T01

ATGTTCTTGATTATTCTTTGTTTTATTTGTCAGGTTGCTGATGAGTATGTCAAAAGAAAGGAACAGATGAAACAATGGATGCCCATCGCTGTATACATGTATGATCCGAAGGCTGGTGGCTTGATATCAAAATCTGAGTCCCTGTTCTTGAACTTTCTCTGTACTATTTCTCAGGTTGCTGATGAGTTTATTAAAGAAGGGAGAAAACAGAATGGTGATTTTGATTCATATATTTCACGAATAAGGAAGCCTCATGTGTGGGGAGGCGAACCCGAATTGTTCATTGCTTCACATGTTTTGCAGATGCCAATCACTGTATACATGTATGATCGGGAAGCTGGTGGCTTGATATCAATAGCTGAGTATGGCCAAGAATACGGCAAGGAAAATCCAATTAGAGTTCTGTACCATGGGTTTGGTCATTATGATGCATTAGAGGTTCCTAAAAAGAAGGGTCCTAAGTCACGACTCTAG

Protein sequence

>MsG0180002908.01.T01

MFLIILCFICQVADEYVKRKEQMKQWMPIAVYMYDPKAGGLISKSESLFLNFLCTISQVADEFIKEGRKQNGDFDSYISRIRKPHVWGGEPELFIASHVLQMPITVYMYDREAGGLISIAEYGQEYGKENPIRVLYHGFGHYDALEVPKKKGPKSRL*